[1] "ofn"          "-oTGBMLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBMLGG-TP/19775190/GBMLGG-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBMLGG-TP/20223852/transformed.cor.cli.txt"

nPatients in clinical file=1108, in cluster file=796, common to both=790
[1] 174 790
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
           411            379 
  IDH1 MUTATED IDH1 WILD-TYPE 
           411            379 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           326            464 
  TP53 MUTATED TP53 WILD-TYPE 
           326            464 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
           210            580 
  ATRX MUTATED ATRX WILD-TYPE 
           210            580 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
          109           681 
  CIC MUTATED CIC WILD-TYPE 
          109           681 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           62           728 
  NF1 MUTATED NF1 WILD-TYPE 
           62           728 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              54              736 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              54              736 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              748 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              748 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            770 
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            770 
[1] "FUBP1 MUTATION ANALYSIS"
[1] 3
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             743 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             743 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           29           761 
  RB1 MUTATED RB1 WILD-TYPE 
           29           761 
[1] "TCF12 MUTATION ANALYSIS"
[1] 3
  TCF12 MUTATED TCF12 WILD-TYPE 
             18             772 
  TCF12 MUTATED TCF12 WILD-TYPE 
             18             772 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              70              720 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              70              720 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
             11             779 
  STK19 MUTATED STK19 WILD-TYPE 
             11             779 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
           109            681 
  PTEN MUTATED PTEN WILD-TYPE 
           109            681 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              22              768 
  ARID1A MUTATED ARID1A WILD-TYPE 
              22              768 
[1] "SLC26A3 MUTATION ANALYSIS"
[1] 3
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
               10               780 
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
               10               780 
[1] "NIPBL MUTATION ANALYSIS"
[1] 3
  NIPBL MUTATED NIPBL WILD-TYPE 
             20             770 
  NIPBL MUTATED NIPBL WILD-TYPE 
             20             770 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             12             778 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             12             778 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              779 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              779 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              782 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              782 
[1] "CREBZF MUTATION ANALYSIS"
[1] 3
  CREBZF MUTATED CREBZF WILD-TYPE 
               9              781 
  CREBZF MUTATED CREBZF WILD-TYPE 
               9              781 
[1] "PLCG1 MUTATION ANALYSIS"
[1] 3
  PLCG1 MUTATED PLCG1 WILD-TYPE 
             11             779 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
             11             779 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             16             774 
  STAG2 MUTATED STAG2 WILD-TYPE 
             16             774 
[1] "SEMG1 MUTATION ANALYSIS"
[1] 3
  SEMG1 MUTATED SEMG1 WILD-TYPE 
             11             779 
  SEMG1 MUTATED SEMG1 WILD-TYPE 
             11             779 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               6              784 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               6              784 
[1] "MUC17 MUTATION ANALYSIS"
[1] 3
  MUC17 MUTATED MUC17 WILD-TYPE 
             48             742 
  MUC17 MUTATED MUC17 WILD-TYPE 
             48             742 
[1] "PDGFRA MUTATION ANALYSIS"
[1] 3
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              21              769 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              21              769 
[1] "NUP210L MUTATION ANALYSIS"
[1] 3
  NUP210L MUTATED NUP210L WILD-TYPE 
               11               779 
  NUP210L MUTATED NUP210L WILD-TYPE 
               11               779 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            10            780 
  IRS4 MUTATED IRS4 WILD-TYPE 
            10            780 
[1] "NKD2 MUTATION ANALYSIS"
[1] 3
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            786 
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            786 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
             3            787 
  MED9 MUTATED MED9 WILD-TYPE 
             3            787 
[1] "HTRA2 MUTATION ANALYSIS"
[1] 3
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             785 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             785 
[1] "BCOR MUTATION ANALYSIS"
[1] 3
  BCOR MUTATED BCOR WILD-TYPE 
            22            768 
  BCOR MUTATED BCOR WILD-TYPE 
            22            768 
[1] "REN MUTATION ANALYSIS"
[1] 3
  REN MUTATED REN WILD-TYPE 
            7           783 
  REN MUTATED REN WILD-TYPE 
            7           783 
[1] "RBPJ MUTATION ANALYSIS"
[1] 3
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            783 
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            783 
[1] "DDX5 MUTATION ANALYSIS"
[1] 3
  DDX5 MUTATED DDX5 WILD-TYPE 
             8            782 
  DDX5 MUTATED DDX5 WILD-TYPE 
             8            782 
[1] "PTPN11 MUTATION ANALYSIS"
[1] 3
  PTPN11 MUTATED PTPN11 WILD-TYPE 
              11              779 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
              11              779 
[1] "KDR MUTATION ANALYSIS"
[1] 3
  KDR MUTATED KDR WILD-TYPE 
           13           777 
  KDR MUTATED KDR WILD-TYPE 
           13           777 
[1] "RPL5 MUTATION ANALYSIS"
[1] 3
  RPL5 MUTATED RPL5 WILD-TYPE 
            10            780 
  RPL5 MUTATED RPL5 WILD-TYPE 
            10            780 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             5            785 
  NRAS MUTATED NRAS WILD-TYPE 
             5            785 
[1] "TPX2 MUTATION ANALYSIS"
[1] 3
  TPX2 MUTATED TPX2 WILD-TYPE 
             7            783 
  TPX2 MUTATED TPX2 WILD-TYPE 
             7            783 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             6            784 
  EMG1 MUTATED EMG1 WILD-TYPE 
             6            784 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            11            779 
  BRAF MUTATED BRAF WILD-TYPE 
            11            779 
[1] "MX2 MUTATION ANALYSIS"
[1] 3
  MX2 MUTATED MX2 WILD-TYPE 
            9           781 
  MX2 MUTATED MX2 WILD-TYPE 
            9           781 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              23              767 
  FAM47C MUTATED FAM47C WILD-TYPE 
              23              767 
[1] "TRERF1 MUTATION ANALYSIS"
[1] 3
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               7              783 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               7              783 
[1] "MYST4 MUTATION ANALYSIS"
[1] 3
  MYST4 MUTATED MYST4 WILD-TYPE 
             12             778 
  MYST4 MUTATED MYST4 WILD-TYPE 
             12             778 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             4            786 
  SRPX MUTATED SRPX WILD-TYPE 
             4            786 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             13             777 
  SETD2 MUTATED SETD2 WILD-TYPE 
             13             777 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              11              779 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              11              779 
[1] "SLC6A3 MUTATION ANALYSIS"
[1] 3
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
              12              778 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
              12              778 
[1] "DSP MUTATION ANALYSIS"
[1] 3
  DSP MUTATED DSP WILD-TYPE 
           19           771 
  DSP MUTATED DSP WILD-TYPE 
           19           771 
[1] "ZNF292 MUTATION ANALYSIS"
[1] 3
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              17              773 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              17              773 
[1] "KTELC1 MUTATION ANALYSIS"
[1] 3
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              785 
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              785 
[1] "TLR6 MUTATION ANALYSIS"
[1] 3
  TLR6 MUTATED TLR6 WILD-TYPE 
             8            782 
  TLR6 MUTATED TLR6 WILD-TYPE 
             8            782 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
           108            682 
  EGFR MUTATED EGFR WILD-TYPE 
           108            682 
[1] "ACADS MUTATION ANALYSIS"
[1] 3
  ACADS MUTATED ACADS WILD-TYPE 
              5             785 
  ACADS MUTATED ACADS WILD-TYPE 
              5             785 
[1] "TMEM216 MUTATION ANALYSIS"
[1] 3
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               787 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               787 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             13             777 
  ARID2 MUTATED ARID2 WILD-TYPE 
             13             777 
[1] "FAM83D MUTATION ANALYSIS"
[1] 3
  FAM83D MUTATED FAM83D WILD-TYPE 
               5              785 
  FAM83D MUTATED FAM83D WILD-TYPE 
               5              785 
[1] "NEU2 MUTATION ANALYSIS"
[1] 3
  NEU2 MUTATED NEU2 WILD-TYPE 
             8            782 
  NEU2 MUTATED NEU2 WILD-TYPE 
             8            782 
[1] "LUM MUTATION ANALYSIS"
[1] 3
  LUM MUTATED LUM WILD-TYPE 
            7           783 
  LUM MUTATED LUM WILD-TYPE 
            7           783 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
            6           784 
  WRN MUTATED WRN WILD-TYPE 
            6           784 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                787 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                787 
[1] "ZNF512B MUTATION ANALYSIS"
[1] 3
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               785 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               785 
[1] "PRCP MUTATION ANALYSIS"
[1] 3
  PRCP MUTATED PRCP WILD-TYPE 
             5            785 
  PRCP MUTATED PRCP WILD-TYPE 
             5            785 
[1] "ATF7IP2 MUTATION ANALYSIS"
[1] 3
  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
                8               782 
  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
                8               782 
[1] "DNMT3A MUTATION ANALYSIS"
[1] 3
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              780 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              780 
[1] "PROKR2 MUTATION ANALYSIS"
[1] 3
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               9              781 
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               9              781 
[1] "C10ORF76 MUTATION ANALYSIS"
[1] 3
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
                 4                786 
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
                 4                786 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              22              768 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              22              768 
[1] "KRT15 MUTATION ANALYSIS"
[1] 3
  KRT15 MUTATED KRT15 WILD-TYPE 
              8             782 
  KRT15 MUTATED KRT15 WILD-TYPE 
              8             782 
[1] "G6PC MUTATION ANALYSIS"
[1] 3
  G6PC MUTATED G6PC WILD-TYPE 
             7            783 
  G6PC MUTATED G6PC WILD-TYPE 
             7            783 
[1] "SERPING1 MUTATION ANALYSIS"
[1] 3
  SERPING1 MUTATED SERPING1 WILD-TYPE 
                 4                786 
  SERPING1 MUTATED SERPING1 WILD-TYPE 
                 4                786 
[1] "ZDHHC4 MUTATION ANALYSIS"
[1] 3
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
               3              787 
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
               3              787 
[1] "CPEB4 MUTATION ANALYSIS"
[1] 3
  CPEB4 MUTATED CPEB4 WILD-TYPE 
              7             783 
  CPEB4 MUTATED CPEB4 WILD-TYPE 
              7             783 
[1] "EEF1A1 MUTATION ANALYSIS"
[1] 3
  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
               8              782 
  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
               8              782 
[1] "PDHA1 MUTATION ANALYSIS"
[1] 3
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              6             784 
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              6             784 
[1] "FAM123C MUTATION ANALYSIS"
[1] 3
  FAM123C MUTATED FAM123C WILD-TYPE 
               11               779 
  FAM123C MUTATED FAM123C WILD-TYPE 
               11               779 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
             4            786 
  KRAS MUTATED KRAS WILD-TYPE 
             4            786 
[1] "OAS2 MUTATION ANALYSIS"
[1] 3
  OAS2 MUTATED OAS2 WILD-TYPE 
             4            786 
  OAS2 MUTATED OAS2 WILD-TYPE 
             4            786 
[1] "MAP3K1 MUTATION ANALYSIS"
[1] 3
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
               9              781 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
               9              781 
[1] "TRPV6 MUTATION ANALYSIS"
[1] 3
  TRPV6 MUTATED TRPV6 WILD-TYPE 
             13             777 
  TRPV6 MUTATED TRPV6 WILD-TYPE 
             13             777 
[1] "MAP3K12 MUTATION ANALYSIS"
[1] 3
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
                6               784 
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
                6               784 
[1] "TLR7 MUTATION ANALYSIS"
[1] 3
  TLR7 MUTATED TLR7 WILD-TYPE 
            10            780 
  TLR7 MUTATED TLR7 WILD-TYPE 
            10            780 
[1] "TREML2 MUTATION ANALYSIS"
[1] 3
  TREML2 MUTATED TREML2 WILD-TYPE 
               6              784 
  TREML2 MUTATED TREML2 WILD-TYPE 
               6              784 
[1] "MACC1 MUTATION ANALYSIS"
[1] 3
  MACC1 MUTATED MACC1 WILD-TYPE 
              8             782 
  MACC1 MUTATED MACC1 WILD-TYPE 
              8             782 
[1] "AOX1 MUTATION ANALYSIS"
[1] 3
  AOX1 MUTATED AOX1 WILD-TYPE 
             8            782 
  AOX1 MUTATED AOX1 WILD-TYPE 
             8            782 
[1] "HEATR3 MUTATION ANALYSIS"
[1] 3
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               4              786 
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               4              786 
[1] "KRT13 MUTATION ANALYSIS"
[1] 3
  KRT13 MUTATED KRT13 WILD-TYPE 
              6             784 
  KRT13 MUTATED KRT13 WILD-TYPE 
              6             784 
[1] "CNOT1 MUTATION ANALYSIS"
[1] 3
  CNOT1 MUTATED CNOT1 WILD-TYPE 
              8             782 
  CNOT1 MUTATED CNOT1 WILD-TYPE 
              8             782 
[1] "ESR2 MUTATION ANALYSIS"
[1] 3
  ESR2 MUTATED ESR2 WILD-TYPE 
             6            784 
  ESR2 MUTATED ESR2 WILD-TYPE 
             6            784 
[1] "GRHL3 MUTATION ANALYSIS"
[1] 3
  GRHL3 MUTATED GRHL3 WILD-TYPE 
              8             782 
  GRHL3 MUTATED GRHL3 WILD-TYPE 
              8             782 
[1] "RASGRF2 MUTATION ANALYSIS"
[1] 3
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
                6               784 
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
                6               784 
[1] "PAK1 MUTATION ANALYSIS"
[1] 3
  PAK1 MUTATED PAK1 WILD-TYPE 
             3            787 
  PAK1 MUTATED PAK1 WILD-TYPE 
             3            787 
[1] "SLC35A2 MUTATION ANALYSIS"
[1] 3
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
                3               787 
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
                3               787 
[1] "LGALS13 MUTATION ANALYSIS"
[1] 3
  LGALS13 MUTATED LGALS13 WILD-TYPE 
                4               786 
  LGALS13 MUTATED LGALS13 WILD-TYPE 
                4               786 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               6              784 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               6              784 
[1] "DOCK5 MUTATION ANALYSIS"
[1] 3
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             20             770 
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             20             770 
[1] "TYRP1 MUTATION ANALYSIS"
[1] 3
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              6             784 
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              6             784 
[1] "CD99L2 MUTATION ANALYSIS"
[1] 3
  CD99L2 MUTATED CD99L2 WILD-TYPE 
               5              785 
  CD99L2 MUTATED CD99L2 WILD-TYPE 
               5              785 
[1] "MORN5 MUTATION ANALYSIS"
[1] 3
  MORN5 MUTATED MORN5 WILD-TYPE 
              3             787 
  MORN5 MUTATED MORN5 WILD-TYPE 
              3             787 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               27               763 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               27               763 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               6              784 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               6              784 
[1] "CD44 MUTATION ANALYSIS"
[1] 3
  CD44 MUTATED CD44 WILD-TYPE 
             6            784 
  CD44 MUTATED CD44 WILD-TYPE 
             6            784 
[1] "OR52M1 MUTATION ANALYSIS"
[1] 3
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               8              782 
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               8              782 
[1] "ROBO3 MUTATION ANALYSIS"
[1] 3
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             785 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             785 
[1] "MYO5A MUTATION ANALYSIS"
[1] 3
  MYO5A MUTATED MYO5A WILD-TYPE 
              5             785 
  MYO5A MUTATED MYO5A WILD-TYPE 
              5             785 
[1] "KRT3 MUTATION ANALYSIS"
[1] 3
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            786 
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            786 
[1] "GEFT MUTATION ANALYSIS"
[1] 3
  GEFT MUTATED GEFT WILD-TYPE 
             4            786 
  GEFT MUTATED GEFT WILD-TYPE 
             4            786 
[1] "POM121 MUTATION ANALYSIS"
[1] 3
  POM121 MUTATED POM121 WILD-TYPE 
               6              784 
  POM121 MUTATED POM121 WILD-TYPE 
               6              784 
[1] "CMA1 MUTATION ANALYSIS"
[1] 3
  CMA1 MUTATED CMA1 WILD-TYPE 
             3            787 
  CMA1 MUTATED CMA1 WILD-TYPE 
             3            787 
[1] "QKI MUTATION ANALYSIS"
[1] 3
  QKI MUTATED QKI WILD-TYPE 
            6           784 
  QKI MUTATED QKI WILD-TYPE 
            6           784 
[1] "TMPRSS6 MUTATION ANALYSIS"
[1] 3
  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
                9               781 
  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
                9               781 
[1] "PLXNA3 MUTATION ANALYSIS"
[1] 3
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
              10              780 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
              10              780 
[1] "EPS8L1 MUTATION ANALYSIS"
[1] 3
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
               4              786 
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
               4              786 
[1] "PRG4 MUTATION ANALYSIS"
[1] 3
  PRG4 MUTATED PRG4 WILD-TYPE 
            10            780 
  PRG4 MUTATED PRG4 WILD-TYPE 
            10            780 
[1] "RFX4 MUTATION ANALYSIS"
[1] 3
  RFX4 MUTATED RFX4 WILD-TYPE 
             6            784 
  RFX4 MUTATED RFX4 WILD-TYPE 
             6            784 
[1] "MYT1 MUTATION ANALYSIS"
[1] 3
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            784 
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            784 
[1] "GFRA4 MUTATION ANALYSIS"
[1] 3
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              3             787 
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              3             787 
[1] "PASD1 MUTATION ANALYSIS"
[1] 3
  PASD1 MUTATED PASD1 WILD-TYPE 
              8             782 
  PASD1 MUTATED PASD1 WILD-TYPE 
              8             782 
[1] "TNFRSF9 MUTATION ANALYSIS"
[1] 3
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                4               786 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                4               786 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
             5            785 
  EGR1 MUTATED EGR1 WILD-TYPE 
             5            785 
[1] "FAM126B MUTATION ANALYSIS"
[1] 3
  FAM126B MUTATED FAM126B WILD-TYPE 
                8               782 
  FAM126B MUTATED FAM126B WILD-TYPE 
                8               782 
[1] "SON MUTATION ANALYSIS"
[1] 3
  SON MUTATED SON WILD-TYPE 
            9           781 
  SON MUTATED SON WILD-TYPE 
            9           781 
[1] "AMPD1 MUTATION ANALYSIS"
[1] 3
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              7             783 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              7             783 
[1] "TNFSF9 MUTATION ANALYSIS"
[1] 3
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               5              785 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               5              785 
[1] "MYH11 MUTATION ANALYSIS"
[1] 3
  MYH11 MUTATED MYH11 WILD-TYPE 
             14             776 
  MYH11 MUTATED MYH11 WILD-TYPE 
             14             776 
[1] "FMR1 MUTATION ANALYSIS"
[1] 3
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            785 
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            785 
[1] "SOX13 MUTATION ANALYSIS"
[1] 3
  SOX13 MUTATED SOX13 WILD-TYPE 
              5             785 
  SOX13 MUTATED SOX13 WILD-TYPE 
              5             785 
[1] "ANKRD36 MUTATION ANALYSIS"
[1] 3
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               783 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               783 
[1] "KLKB1 MUTATION ANALYSIS"
[1] 3
  KLKB1 MUTATED KLKB1 WILD-TYPE 
              7             783 
  KLKB1 MUTATED KLKB1 WILD-TYPE 
              7             783 
[1] "ST3GAL6 MUTATION ANALYSIS"
[1] 3
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
                5               785 
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
                5               785 
[1] "HTT MUTATION ANALYSIS"
[1] 3
  HTT MUTATED HTT WILD-TYPE 
            5           785 
  HTT MUTATED HTT WILD-TYPE 
            5           785 
[1] "AK7 MUTATION ANALYSIS"
[1] 3
  AK7 MUTATED AK7 WILD-TYPE 
            8           782 
  AK7 MUTATED AK7 WILD-TYPE 
            8           782 
[1] "ZZZ3 MUTATION ANALYSIS"
[1] 3
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
             4            786 
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
             4            786 
[1] "CDA MUTATION ANALYSIS"
[1] 3
  CDA MUTATED CDA WILD-TYPE 
            3           787 
  CDA MUTATED CDA WILD-TYPE 
            3           787 
[1] "NPTX1 MUTATION ANALYSIS"
[1] 3
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              5             785 
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              5             785 
[1] "C10ORF46 MUTATION ANALYSIS"
[1] 3
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
                 3                787 
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
                 3                787 
[1] "CHGB MUTATION ANALYSIS"
[1] 3
  CHGB MUTATED CHGB WILD-TYPE 
             8            782 
  CHGB MUTATED CHGB WILD-TYPE 
             8            782 
[1] "MTMR12 MUTATION ANALYSIS"
[1] 3
  MTMR12 MUTATED MTMR12 WILD-TYPE 
               4              786 
  MTMR12 MUTATED MTMR12 WILD-TYPE 
               4              786 
[1] "CD1D MUTATION ANALYSIS"
[1] 3
  CD1D MUTATED CD1D WILD-TYPE 
             4            786 
  CD1D MUTATED CD1D WILD-TYPE 
             4            786 
[1] "GABRA6 MUTATION ANALYSIS"
[1] 3
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              15              775 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              15              775 
[1] "SLC2A3 MUTATION ANALYSIS"
[1] 3
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
               5              785 
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
               5              785 
[1] "WDR90 MUTATION ANALYSIS"
[1] 3
  WDR90 MUTATED WDR90 WILD-TYPE 
              8             782 
  WDR90 MUTATED WDR90 WILD-TYPE 
              8             782 
[1] "REXO1 MUTATION ANALYSIS"
[1] 3
  REXO1 MUTATED REXO1 WILD-TYPE 
              8             782 
  REXO1 MUTATED REXO1 WILD-TYPE 
              8             782 
[1] "TTC30B MUTATION ANALYSIS"
[1] 3
  TTC30B MUTATED TTC30B WILD-TYPE 
               7              783 
  TTC30B MUTATED TTC30B WILD-TYPE 
               7              783 
[1] "ZMYM2 MUTATION ANALYSIS"
[1] 3
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             783 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             783 
[1] "NKPD1 MUTATION ANALYSIS"
[1] 3
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              3             787 
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              3             787 
[1] "ALPK3 MUTATION ANALYSIS"
[1] 3
  ALPK3 MUTATED ALPK3 WILD-TYPE 
              4             786 
  ALPK3 MUTATED ALPK3 WILD-TYPE 
              4             786 
[1] "INF2 MUTATION ANALYSIS"
[1] 3
  INF2 MUTATED INF2 WILD-TYPE 
             4            786 
  INF2 MUTATED INF2 WILD-TYPE 
             4            786 
[1] "SGOL2 MUTATION ANALYSIS"
[1] 3
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              8             782 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              8             782 
[1] "GPR132 MUTATION ANALYSIS"
[1] 3
  GPR132 MUTATED GPR132 WILD-TYPE 
               6              784 
  GPR132 MUTATED GPR132 WILD-TYPE 
               6              784 
[1] "TP63 MUTATION ANALYSIS"
[1] 3
  TP63 MUTATED TP63 WILD-TYPE 
             9            781 
  TP63 MUTATED TP63 WILD-TYPE 
             9            781 
[1] "ZNF334 MUTATION ANALYSIS"
[1] 3
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               4              786 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               4              786 
[1] "RGS3 MUTATION ANALYSIS"
[1] 3
  RGS3 MUTATED RGS3 WILD-TYPE 
             8            782 
  RGS3 MUTATED RGS3 WILD-TYPE 
             8            782 
[1] "NKX2-2 MUTATION ANALYSIS"
[1] 3
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               6              784 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               6              784 
[1] "SEZ6L2 MUTATION ANALYSIS"
[1] 3
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
               7              783 
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
               7              783 
[1] "MYH8 MUTATION ANALYSIS"
[1] 3
  MYH8 MUTATED MYH8 WILD-TYPE 
            20            770 
  MYH8 MUTATED MYH8 WILD-TYPE 
            20            770 
[1] "CYP11A1 MUTATION ANALYSIS"
[1] 3
  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
                7               783 
  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
                7               783 
[1] "TJAP1 MUTATION ANALYSIS"
[1] 3
  TJAP1 MUTATED TJAP1 WILD-TYPE 
              3             787 
  TJAP1 MUTATED TJAP1 WILD-TYPE 
              3             787 
[1] "PRKCD MUTATION ANALYSIS"
[1] 3
  PRKCD MUTATED PRKCD WILD-TYPE 
              3             787 
  PRKCD MUTATED PRKCD WILD-TYPE 
              3             787 
[1] "FLNB MUTATION ANALYSIS"
[1] 3
  FLNB MUTATED FLNB WILD-TYPE 
            10            780 
  FLNB MUTATED FLNB WILD-TYPE 
            10            780 
[1] "PAN3 MUTATION ANALYSIS"
[1] 3
  PAN3 MUTATED PAN3 WILD-TYPE 
             7            783 
  PAN3 MUTATED PAN3 WILD-TYPE 
             7            783 
[1] "CHD8 MUTATION ANALYSIS"
[1] 3
  CHD8 MUTATED CHD8 WILD-TYPE 
            10            780 
  CHD8 MUTATED CHD8 WILD-TYPE 
            10            780 
[1] "TTYH3 MUTATION ANALYSIS"
[1] 3
  TTYH3 MUTATED TTYH3 WILD-TYPE 
              4             786 
  TTYH3 MUTATED TTYH3 WILD-TYPE 
              4             786 
[1] "SLFN11 MUTATION ANALYSIS"
[1] 3
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               5              785 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               5              785 
[1] "CIB1 MUTATION ANALYSIS"
[1] 3
  CIB1 MUTATED CIB1 WILD-TYPE 
             5            785 
  CIB1 MUTATED CIB1 WILD-TYPE 
             5            785 
[1] "GLYAT MUTATION ANALYSIS"
[1] 3
  GLYAT MUTATED GLYAT WILD-TYPE 
              5             785 
  GLYAT MUTATED GLYAT WILD-TYPE 
              5             785 
[1] "IGFN1 MUTATION ANALYSIS"
[1] 3
  IGFN1 MUTATED IGFN1 WILD-TYPE 
              9             781 
  IGFN1 MUTATED IGFN1 WILD-TYPE 
              9             781 
[1] "LRRC55 MUTATION ANALYSIS"
[1] 3
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               9              781 
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               9              781 
[1] "WDR63 MUTATION ANALYSIS"
[1] 3
  WDR63 MUTATED WDR63 WILD-TYPE 
              9             781 
  WDR63 MUTATED WDR63 WILD-TYPE 
              9             781 
[1] "KIF26B MUTATION ANALYSIS"
[1] 3
  KIF26B MUTATED KIF26B WILD-TYPE 
               6              784 
  KIF26B MUTATED KIF26B WILD-TYPE 
               6              784 
[1] "AGXT2L1 MUTATION ANALYSIS"
[1] 3
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                4               786 
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                4               786 
[1] "data2feature, selection=ALL"
 [1] "YEARS_TO_BIRTH"                      
 [2] "VITAL_STATUS"                        
 [3] "DAYS_TO_DEATH"                       
 [4] "DAYS_TO_LAST_FOLLOWUP"               
 [5] "TUMOR_TISSUE_SITE"                   
 [6] "GENDER"                              
 [7] "DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS"
 [8] "DAYS_TO_LAST_KNOWN_ALIVE"            
 [9] "RADIATION_THERAPY"                   
[10] "KARNOFSKY_PERFORMANCE_SCORE"         
[11] "HISTOLOGICAL_TYPE"                   
[12] "RACE"                                
[13] "ETHNICITY"                           

Input Data has 13 rows and 790 columns.

[1] "Last Follow UP"
Variable 1:'YEARS_TO_BIRTH':	nDistinctValues=73,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITAL_STATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYS_TO_DEATH':	nDistinctValues=294,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 4:'DAYS_TO_LAST_FOLLOWUP':	nDistinctValues=539,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('FOLLOWUP', vnms) to deal with survival parameters seperately"
Variable 5:'TUMOR_TISSUE_SITE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 8:'DAYS_TO_LAST_KNOWN_ALIVE':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 9:'RADIATION_THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'KARNOFSKY_PERFORMANCE_SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL_TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RACE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 790 columns, 1 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "* non-survival variables: "
[1] "YEARS_TO_BIRTH"              "TUMOR_TISSUE_SITE"          
[3] "GENDER"                      "RADIATION_THERAPY"          
[5] "KARNOFSKY_PERFORMANCE_SCORE" "HISTOLOGICAL_TYPE"          
[7] "RACE"                        "ETHNICITY"                  
YEARS_TO_BIRTH, nv=73, binary=FALSE, numeric=TRUE
TUMOR_TISSUE_SITE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
RADIATION_THERAPY, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY_PERFORMANCE_SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL_TYPE, nv=6, binary=FALSE, numeric=FALSE
RACE, nv=4, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = IDH1 MUTATION ANALYSIS
D1V1, survival
                sevent
clus2              0   1
  IDH1 MUTATED   336  72
  IDH1 WILD-TYPE 117 262
  IDH1 MUTATED IDH1 WILD-TYPE 
           408            379 
  IDH1 MUTATED IDH1 WILD-TYPE 
            72            262 
$`IDH1 MUTATED`
TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-2570 TCGA-06-5417 TCGA-06-6389 
       15.32        22.72        33.67        31.50         5.10         7.79 
TCGA-06-6701 TCGA-14-1456 TCGA-14-4157 TCGA-15-1444 TCGA-19-2629 TCGA-26-1442 
        4.96        40.96         3.42        50.53        24.23        31.33 
TCGA-27-2521 TCGA-32-4208 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       10.39        21.14         4.70        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6665 
       64.64        40.18         0.10         9.96        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
       46.95         7.56        49.94         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P 
       39.78        37.45        33.57        31.63        24.20        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DH-5142 
       18.51        12.10        11.24        17.88        30.74        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5851 
       17.19        23.21        17.46        13.71        18.61        17.46 
TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       13.38         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 
       52.11        22.42        49.02        75.16        46.06         1.22 
TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 
       87.45        94.52       114.08         7.96         2.40        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7015 TCGA-DU-7018 
      156.23       154.36        14.99       105.21        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       26.30        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
       60.30        23.31        41.98        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU 
       15.48        14.17        33.27        29.85        31.69        26.17 
TCGA-DU-A5TW TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       24.99        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TC TCGA-DU-A7TG 
       17.16        21.30        17.98       139.04        37.38        44.42 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK 
       95.57       130.78        29.13        93.21         3.65        12.43 
TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       75.02        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       47.77        52.21        36.82        14.93        42.54        41.33 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8182 
       15.35        17.88        40.08        22.55        20.61        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        20.09        14.96        32.61        38.27 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        28.54        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 TCGA-HT-7471 
       18.64        27.52         0.10         6.67        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 
        0.03        16.54         3.75        17.42        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       14.27         0.16        16.24         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       31.69        14.96         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       14.53        19.23        50.63        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 
        0.13         3.68         5.33        35.47        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8105 TCGA-HT-8106 
        1.64         9.40        63.55        37.87         6.25         0.10 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A4DV 
        2.50         5.56         0.23        34.19        28.27        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.13        20.22         0.10         2.70        16.93         1.81 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74K 
       16.83        21.40         6.38        17.52        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV 
       20.81        20.71        19.00        42.77        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        6.71         7.99         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A731 TCGA-P5-A733 
        0.76        10.42        13.25        11.64         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CU 
        4.41        15.16         2.53        12.62        14.04        14.83 
TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       13.61         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
       16.73         1.91        16.50        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 
       18.77        41.10        28.14        36.82        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD 
       32.61        35.15        98.24        95.93       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN 
      135.22        85.55        38.56        84.99        31.10        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY 
       18.61        18.64        14.07        36.13         7.92        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       18.54        27.16       169.84        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       31.59        20.48        48.33        49.32        34.78        65.39 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        30.44        28.08        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       33.24        25.38        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       43.04        13.51         0.10        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       37.05        16.01        23.21        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

$`IDH1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2485 
        4.73         2.83        14.73         2.50        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 
       20.32         2.70         6.15        20.38         6.94        12.95 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       25.35        26.70        11.90         0.20        10.29         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
       10.82        10.65         5.85        11.41        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        4.47         3.22        88.14        69.90        73.84        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
       16.64         4.37         0.43        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.15         4.57         5.23         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 
        2.89        28.93         0.79         1.38        58.78        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-15-0742 TCGA-16-0846 
        7.63         7.17        17.49         0.39        13.78         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        7.53         0.16         4.08         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5133 
       14.07        16.80        14.96        13.87         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6669 
        7.69        21.01         6.38        17.69        23.84        49.12 
TCGA-DB-A4XG TCGA-DB-A64O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-A7UR 
       72.95        25.48        16.18        19.96        31.82        54.25 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6399 
       18.02        14.56         6.74         8.45       211.17        65.75 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 
        7.04        11.64       133.74        19.89        16.83        11.47 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7309 TCGA-DU-8158 
        6.54         8.84        10.36         7.96         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8165 TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A76K 
       23.74        14.60        19.13        24.43        33.96        11.41 
TCGA-DU-A76L TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TJ TCGA-E1-5318 
       26.76        84.33        51.52         7.50         0.56        78.21 
TCGA-E1-A7YD TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YQ 
       14.30        19.46        16.18        21.30        23.90        51.88 
TCGA-E1-A7Z2 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-8181 
       13.08        25.48        18.77        18.44        20.09        28.34 
TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-7469 
       22.52        10.72        18.38        10.78         5.72        11.54 
TCGA-HT-7476 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7691 TCGA-HT-7854 TCGA-HT-7856 
        6.54         0.76        44.68         0.10        39.48        39.09 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8015 TCGA-HT-8019 
        0.23         0.49         3.72        16.24         0.10        33.01 
TCGA-HT-8104 TCGA-HT-8107 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 
       12.23         0.46        13.78        29.59        13.74        15.72 
TCGA-HT-A4DS TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A617 TCGA-HT-A61C 
        0.23         0.07        27.35         5.33        16.14        17.65 
TCGA-HT-A74H TCGA-HW-7491 TCGA-HW-A5KK TCGA-KT-A7W1 TCGA-P5-A5EY TCGA-P5-A5F6 
        2.43        68.32        12.76        14.40         2.37         1.28 
TCGA-P5-A72U TCGA-P5-A730 TCGA-QH-A65X TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CX 
        0.23        10.95        15.85        19.33        14.53        12.23 
TCGA-QH-A6XC TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6UA TCGA-S9-A6WM TCGA-S9-A7IX 
        5.03        35.38        24.39         5.85        19.86        26.93 
TCGA-S9-A7QY TCGA-S9-A7R2 TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A84B TCGA-TM-A84C 
       28.37        10.39        18.71        54.77        24.92        16.18 
TCGA-TM-A84J TCGA-TM-A84R TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-VM-A8C9 TCGA-VM-A8CD 
       24.16        18.61        31.20        30.05        43.20         7.89 
TCGA-VW-A8FI 
        8.05 

  IDH1 MUTATED IDH1 WILD-TYPE 
          0.03           0.07 
  IDH1 MUTATED IDH1 WILD-TYPE 
        182.33         211.17 
  IDH1 MUTATED IDH1 WILD-TYPE 
         23.21          12.46 
[1] "0.0 - 182.3 (23.2)" "0.1 - 211.2 (12.5)"
[1] "hr=" "8.2"
D1V2, continuous
D1V3, binary
                cls
clus               0   1
  IDH1 MUTATED    14 397
  IDH1 WILD-TYPE 264 115
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED     14  397
  IDH1 WILD-TYPE  264  115
                        clus
vv                       IDH1 MUTATED IDH1 WILD-TYPE
  BRAIN                            14            264
  CENTRAL NERVOUS SYSTEM          397            115
[1] 2 2
[1] FALSE
D1V4, binary
                cls
clus               0   1
  IDH1 MUTATED   181 230
  IDH1 WILD-TYPE 148 231
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED    181  230
  IDH1 WILD-TYPE  148  231
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  FEMALE          181            148
  MALE            230            231
[1] 2 2
[1] FALSE
D1V5, binary
                cls
clus               0   1
  IDH1 MUTATED   157 230
  IDH1 WILD-TYPE  75 278
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED    157  230
  IDH1 WILD-TYPE   75  278
     clus
vv    IDH1 MUTATED IDH1 WILD-TYPE
  NO           157             75
  YES          230            278
[1] 2 2
[1] FALSE
D1V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  IDH1 MUTATED           134                             1              109
  IDH1 WILD-TYPE          58                             8               21
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  IDH1 MUTATED                 154                   0
  IDH1 WILD-TYPE                36                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  IDH1 MUTATED                                13
  IDH1 WILD-TYPE                             252
D1V7, multiclass
                                 clus
vv                                IDH1 MUTATED IDH1 WILD-TYPE
  ASTROCYTOMA                              134             58
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                         109             21
  OLIGODENDROGLIOMA                        154             36
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           13            252
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  IDH1 MUTATED                                  0     8
  IDH1 WILD-TYPE                                1     5
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  IDH1 MUTATED                          13   382
  IDH1 WILD-TYPE                        25   340
D1V8, multiclass
                                  clus
vv                                 IDH1 MUTATED IDH1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       8              5
  BLACK OR AFRICAN AMERICAN                  13             25
  WHITE                                     382            340
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V9, binary
                cls
clus               0   1
  IDH1 MUTATED    25 358
  IDH1 WILD-TYPE  10 308
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED     25  358
  IDH1 WILD-TYPE   10  308
                        clus
vv                       IDH1 MUTATED IDH1 WILD-TYPE
  HISPANIC OR LATINO               25             10
  NOT HISPANIC OR LATINO          358            308
[1] 2 2
[1] FALSE

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, survival
                sevent
clus2              0   1
  TP53 MUTATED   217 108
  TP53 WILD-TYPE 236 226
  TP53 MUTATED TP53 WILD-TYPE 
           325            462 
  TP53 MUTATED TP53 WILD-TYPE 
           108            226 
$`TP53 MUTATED`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2483 TCGA-02-2485 TCGA-06-0128 
        4.73         2.83         2.50        15.32        15.45        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 TCGA-06-0195 
       33.67        12.95        69.90        44.58        15.42         7.40 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0743 TCGA-06-0744 
       13.64        13.32        48.69        12.62        26.40        46.88 
TCGA-06-0875 TCGA-06-0876 TCGA-06-2558 TCGA-06-2559 TCGA-06-2563 TCGA-06-2567 
       43.46        46.19        12.49         4.93        30.64         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5417 TCGA-06-5858 TCGA-06-6389 
        0.43        31.50        11.74         5.10         6.15         7.79 
TCGA-06-6694 TCGA-06-6698 TCGA-06-6701 TCGA-12-0618 TCGA-12-0619 TCGA-14-0740 
        7.36         4.77         4.96        12.99        34.92        11.97 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1456 TCGA-14-1825 TCGA-14-4157 
        1.35         5.39        28.93        40.96         7.63         3.42 
TCGA-15-1444 TCGA-16-0846 TCGA-19-1390 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 
       50.53         3.91        25.38         7.53         4.08        24.23 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5136 TCGA-27-1830 TCGA-27-1835 TCGA-27-1836 
       31.33        14.86        18.97         5.06        21.30        30.05 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-28-1753 TCGA-28-2509 TCGA-28-5207 
       11.51        18.08        10.39         1.22         4.77        11.28 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-32-1970 TCGA-32-2491 TCGA-32-2634 
       11.01        13.64        22.68        15.39        12.23        22.78 
TCGA-32-4208 TCGA-32-4210 TCGA-41-2575 TCGA-41-5651 TCGA-74-6573 TCGA-76-4925 
       21.14         3.72         9.53        15.12         3.45         4.80 
TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 
        3.65         2.53         2.70        20.98        34.45        18.64 
TCGA-76-6664 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5396 
       36.20         4.70        43.89        18.15        40.18         9.96 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5270 TCGA-DB-5273 
       17.95        12.43        46.95         7.56       122.73        81.96 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB 
       47.93        50.86        36.56        78.28        46.42        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X 
       46.72        39.78        37.45        33.57        27.45        18.51 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 
       11.24        17.88        30.74        19.96        63.88        46.06 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       42.05        27.81        17.19        17.46        13.71        18.61 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 
       17.46        13.38         6.81        18.94        17.49       211.17 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 
       49.02        75.16        65.75        87.45        94.52       114.08 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 
        2.40        62.96       156.23        14.99       105.21         8.84 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       90.77        26.30        18.94        44.02        62.01        25.91 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
       23.31        41.98         2.76        20.68        19.13        16.96 
TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       15.48        33.27        29.85        24.43        26.17        24.99 
TCGA-DU-A6S7 TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC TCGA-E1-5302 
       20.98        17.16       139.04        84.33        37.38        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YD 
       67.46        41.13        79.99        57.93       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YU 
       29.13        93.21         3.65        12.43        16.18         0.76 
TCGA-E1-A7YW TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 
       36.82        73.48       145.05        32.35         0.20        25.48 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-8182 
       36.82        14.93        42.54        41.33        17.88        13.68 
TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       14.24        14.96        32.61        38.27        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A711 TCGA-FN-7833 
       14.76        21.53        22.26        28.54        48.69        27.52 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       11.54        40.11         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 
        6.54        24.26         6.38        40.34       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 
        4.01         5.03        29.85        23.18       122.47        17.29 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7686 TCGA-HT-7688 
       45.99        56.09        57.60         0.16        42.74        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7873 
       14.96         0.10        17.52        19.23        50.63        23.61 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 
        3.68         5.33        11.28        31.43        63.55        37.87 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
        6.25         0.10         2.50         0.23        34.19        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A618 
       15.72         0.23         0.13         0.10         2.70        16.83 
TCGA-HT-A61B TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-8319 
       17.52        10.52         0.10        41.49        45.60        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-P5-A5EV 
       40.01        42.54        20.81        20.71        19.00         0.23 
TCGA-P5-A5EW TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72W 
        6.71         2.30         5.88         7.63         0.76        10.42 
TCGA-P5-A72X TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A780 TCGA-QH-A65S 
       13.25        13.61         9.60         7.56         2.37         2.53 
TCGA-QH-A6CW TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 
       13.61         9.17        10.29         1.91        16.50        12.99 
TCGA-RY-A83Z TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TZ 
        9.90        19.59        62.17        87.12        18.77        36.82 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6WG TCGA-S9-A6WO TCGA-S9-A6WQ 
       35.15        98.24        95.93        85.55        18.61        14.07 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R3 
       19.99        20.02        15.06        18.54        27.16        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7CA 
       30.05        98.63        31.59        20.48        48.33        34.78 
TCGA-TM-A7CF TCGA-TM-A84F TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       65.39        59.05        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RJ 
       24.79        25.38        23.80        21.37        15.98        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW 
       44.09        36.69        33.73        25.87        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8CF TCGA-VV-A86M TCGA-VW-A8FI TCGA-WH-A86K 
       31.36        43.04        20.02        16.01         8.05        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

$`TP53 WILD-TYPE`
TCGA-02-0047 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       14.73        12.92        20.32         2.70         6.15        20.38 
TCGA-06-0126 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
        6.94        25.35        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.20         2.33        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0192 
        3.29         4.47         3.22        88.14        73.84        38.96 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0240 
        7.63         0.53        15.02        24.16         0.72        20.42 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0877 TCGA-06-0878 
        7.86         2.70         2.70         0.92         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-5410 
        1.08        17.65        12.56         5.95        16.64         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        3.75         4.57         5.23         5.39         1.48       120.56 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-08-0386 TCGA-12-0615 
        8.32        12.85         1.55         4.77        18.02        15.35 
TCGA-12-0616 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       14.73        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0862 
        0.95        23.05         2.24        11.24        13.78         2.89 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 
        0.79         1.38        58.78        17.85         7.17        17.49 
TCGA-14-3476 TCGA-15-0742 TCGA-16-0861 TCGA-16-1045 TCGA-19-1790 TCGA-19-2619 
        0.39        13.78         4.31        29.03         5.06         9.67 
TCGA-19-2620 TCGA-19-2624 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.87         0.16         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       16.80        14.96        13.87         9.40         5.49         8.88 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         7.92         2.33        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1837 TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       40.54        14.04        24.76        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-2499 TCGA-28-2502 TCGA-28-2513 
       14.40        15.78         2.53         3.12         0.66         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26        14.93        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 TCGA-32-1979 
       23.44         5.16        10.49         5.42         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        1.18         4.67        12.69        16.93        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 
       15.95         8.84        25.18        20.32        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 
       10.85        19.23         0.85        13.35         8.94         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 TCGA-74-6577 
        4.44        11.84         0.20        12.46        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 
       14.33         7.50         4.54        17.59         3.09         9.17 
TCGA-76-4932 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
       47.93        36.85        16.70         3.29        11.38        17.06 
TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-81-5910 TCGA-81-5911 
        8.35         4.83         5.03        23.90         1.61        17.72 
TCGA-87-5896 TCGA-CS-4941 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5395 
       26.30         7.69        10.62        64.64         0.10        21.01 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
        6.38        17.69        23.84        49.94        49.12         6.61 
TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG 
       75.25        72.92        91.13        44.52        18.84        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DB-A75P TCGA-DH-5141 
       27.81        29.23        14.40        12.10        16.18        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5847 
        8.02        30.21        17.19        54.25        23.21        18.02 
TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 
       14.56         6.74         8.45       182.33        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       22.42        46.06         1.22         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7012 
       19.89        16.83         7.96        11.47       154.36         6.54 
TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7302 TCGA-DU-8158 
       30.67        10.36         7.96        94.32        60.30         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A5TS TCGA-DU-A5TY 
       23.74        14.60        21.40        14.17        31.69        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       25.55        21.57        95.11        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TB TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       21.30        17.98        51.52         7.50        44.42         0.56 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YN 
      134.27        78.21        95.57        19.46        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YV TCGA-E1-A7YY TCGA-E1-A7Z2 
       75.02        51.88        15.32        32.45       146.14        13.08 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6688 TCGA-FG-6692 
       39.48         0.23        47.77        52.21        18.77        18.44 
TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       15.35        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A60K 
       16.01        20.09        22.52        10.72        18.38        17.82 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87N 
       15.02        16.44        10.78        36.66        20.45        18.64 
TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 
        5.72         0.10         6.67         0.13        75.19        95.93 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 
        4.57         3.16        22.06         0.23        14.27        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7691 TCGA-HT-7692 
        0.76        44.68         6.05         0.10         0.10         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7860 
        6.90        14.53        39.48        39.09         0.23         0.49 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-8010 
       37.15         0.33         0.13        35.47         3.72         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8107 
       16.24         9.40         0.10        33.01        12.23         0.46 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-A4DV TCGA-HT-A5R7 
        5.56        13.78        29.59        13.74        26.04        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.07        27.35         5.33        16.93         1.81        16.14 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L 
       21.40         6.38        17.65         2.43        15.35        11.05 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8322 TCGA-HW-A5KJ 
       56.58        13.45        68.32        35.44         6.18        10.55 
TCGA-HW-A5KK TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EX TCGA-P5-A5EY 
       12.76        42.77        14.40        14.40         7.99         2.37 
TCGA-P5-A5F0 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        4.11         1.28         0.23        11.64        10.95         9.01 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V 
       12.23        19.20         3.45         4.41        15.16        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX 
       15.85        14.04        19.33        14.83        14.53        12.23 
TCGA-QH-A6CY TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XC TCGA-QH-A86X 
        2.20        14.53        16.34        16.73         5.03        11.08 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       28.08         2.07        30.67        41.10        28.14        35.38 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UA TCGA-S9-A6UB 
       24.39        25.81        29.85        32.61         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       75.25       135.22        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       26.47        18.64        36.13         7.92        26.93        23.51 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 
        8.19         2.04        20.68        28.37       169.84        10.39 
TCGA-S9-A89V TCGA-TM-A7C3 TCGA-TM-A7C5 TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G 
       18.71        54.77        49.32        24.92        16.18        40.64 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RO 
       33.24        18.61        14.93        19.69         2.04        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       30.05        26.14        33.93        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 TCGA-VW-A7QS TCGA-W9-A837 
        7.89        39.16        23.47        37.05        23.21        51.06 

  TP53 MUTATED TP53 WILD-TYPE 
          0.03           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
        211.17         182.33 
  TP53 MUTATED TP53 WILD-TYPE 
         20.81          14.58 
[1] "0.0 - 211.2 (20.8)" "0.1 - 182.3 (14.6)"
[1] "hr=" "2"  
D2V2, continuous
D2V3, binary
                cls
clus               0   1
  TP53 MUTATED    79 247
  TP53 WILD-TYPE 199 265
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     79  247
  TP53 WILD-TYPE  199  265
                        clus
vv                       TP53 MUTATED TP53 WILD-TYPE
  BRAIN                            79            199
  CENTRAL NERVOUS SYSTEM          247            265
[1] 2 2
[1] FALSE
D2V4, binary
                cls
clus               0   1
  TP53 MUTATED   135 191
  TP53 WILD-TYPE 194 270
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED    135  191
  TP53 WILD-TYPE  194  270
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE          135            194
  MALE            191            270
[1] 2 2
[1] FALSE
D2V5, binary
                cls
clus               0   1
  TP53 MUTATED    79 229
  TP53 WILD-TYPE 153 279
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     79  229
  TP53 WILD-TYPE  153  279
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO            79            153
  YES          229            279
[1] 2 2
[1] FALSE
D2V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TP53 MUTATED           129                             1               74
  TP53 WILD-TYPE          63                             8               56
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TP53 MUTATED                  44                   0
  TP53 WILD-TYPE               146                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TP53 MUTATED                                78
  TP53 WILD-TYPE                             187
D2V7, multiclass
                                 clus
vv                                TP53 MUTATED TP53 WILD-TYPE
  ASTROCYTOMA                              129             63
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                          74             56
  OLIGODENDROGLIOMA                         44            146
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           78            187
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TP53 MUTATED                                  0     3
  TP53 WILD-TYPE                                1    10
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TP53 MUTATED                          13   306
  TP53 WILD-TYPE                        25   416
D2V8, multiclass
                                  clus
vv                                 TP53 MUTATED TP53 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       3             10
  BLACK OR AFRICAN AMERICAN                  13             25
  WHITE                                     306            416
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V9, binary
                cls
clus               0   1
  TP53 MUTATED    18 276
  TP53 WILD-TYPE  17 390
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     18  276
  TP53 WILD-TYPE   17  390
                        clus
vv                       TP53 MUTATED TP53 WILD-TYPE
  HISPANIC OR LATINO               18             17
  NOT HISPANIC OR LATINO          276            390
[1] 2 2
[1] FALSE

Clustering(3) Variable = ATRX MUTATION ANALYSIS
D3V1, survival
                sevent
clus2              0   1
  ATRX MUTATED   158  51
  ATRX WILD-TYPE 295 283
  ATRX MUTATED ATRX WILD-TYPE 
           209            578 
  ATRX MUTATED ATRX WILD-TYPE 
            51            283 
$`ATRX MUTATED`
TCGA-02-2483 TCGA-06-0129 TCGA-06-0213 TCGA-06-2570 TCGA-06-5417 TCGA-06-5858 
       15.32        33.67         0.53        31.50         5.10         6.15 
TCGA-06-6388 TCGA-06-6391 TCGA-06-6701 TCGA-14-1456 TCGA-14-4157 TCGA-15-1444 
        5.23         1.48         4.96        40.96         3.42        50.53 
TCGA-19-2629 TCGA-27-2521 TCGA-32-4208 TCGA-74-6575 TCGA-CS-4938 TCGA-CS-4942 
       24.23        10.39        21.14        20.91         4.70        43.89 
TCGA-CS-4943 TCGA-CS-6666 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
       18.15        46.95       122.73        81.96        47.93        72.92 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       36.56        78.28        30.21        46.72        39.78        37.45 
TCGA-DB-A64S TCGA-DB-A75M TCGA-DB-A75O TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A66B 
       27.45        17.88        30.74        63.88         8.02        42.05 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UV TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 
       27.81        17.19        18.61        17.46        13.38         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
       18.94        17.49       211.17        49.02        75.16        65.75 
TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7011 
       87.45        94.52       114.08        62.96       156.23       105.21 
TCGA-DU-7015 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       90.77        18.94        25.91        23.31        41.98         2.76 
TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       20.68        16.96        15.48        33.27        29.85        31.69 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S7 TCGA-DU-A76O TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.17        24.99        20.98        17.16       139.04        84.33 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 
       50.14        67.46        41.13        79.99        57.93       130.78 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK TCGA-E1-A7YV TCGA-E1-A7YW 
       29.13        93.21         3.65        12.43        32.45        36.82 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5965 
       73.48       145.05        32.35         0.20        25.48        36.82 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-8182 
       14.93        42.54        41.33        17.88        22.55        13.68 
TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       14.24        14.96        32.61        38.27        18.71        23.70 
TCGA-FG-A70Y TCGA-FG-A711 TCGA-FG-A713 TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7470 
       28.54        48.69        20.45        27.52        11.54        40.11 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7603 TCGA-HT-7604 
        6.38       106.95       172.77         4.01        23.18       122.47 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 
       56.09        57.60         0.16        42.74        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 
        0.10        17.52        19.23         0.23        50.63        23.61 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 
        3.68         5.33        11.28        31.43        63.55        37.87 
TCGA-HT-8108 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RB 
        2.50        34.19        28.27         0.13        20.22         0.10 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A74J TCGA-HT-A74O TCGA-HW-7489 
        2.70         1.81        16.83        10.52         0.10        41.49 
TCGA-HW-7490 TCGA-HW-8319 TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-P5-A5EV 
       45.60        39.75        20.81        20.71        19.00         0.23 
TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A733 
        6.71         5.88         7.63        10.42        13.25        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-QH-A65S TCGA-QH-A6CW TCGA-QH-A6X3 TCGA-QH-A6X8 
        9.60         7.56         2.53        13.61        10.29        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A870 TCGA-RY-A83Z TCGA-S9-A6TS TCGA-S9-A6TV 
        1.91        16.50        12.99         9.90        62.17        18.77 
TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG 
       25.81        35.15        98.24        95.93         5.85        85.55 
TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IZ TCGA-S9-A7QW TCGA-S9-A7QX 
       18.61        14.07         7.92        19.99        15.06        18.54 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A84I 
       98.63        31.59        18.71        48.33        34.78        28.08 
TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84T TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       40.83        25.38        23.80        15.98        40.41        44.09 
TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CF TCGA-VM-A8CH 
       25.87        61.41        26.99        43.04        20.02        23.47 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85D TCGA-WY-A85E 
       43.96        43.40        45.80        37.71        20.81 

$`ATRX WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2485 
        4.73         2.83        14.73         2.50        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       12.95        25.35        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.20         2.33        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0214 
       44.58        15.42        38.96         7.40         7.63        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
       16.64         4.37         0.43        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        4.57         7.79         5.39       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-08-0386 TCGA-12-0615 
       12.85         4.77         1.55         4.77        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        0.79         1.38        58.78        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
       17.49         0.39        13.78         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        18.08        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       25.18        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4941 TCGA-CS-4944 
       36.20         1.61        17.72        26.30         7.69        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6667 TCGA-CS-6668 
       17.69        23.84        17.95        12.43         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5274 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       49.12         6.61        75.25        50.86        91.13        44.52 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       46.42        18.84        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V 
       25.48        30.12         5.98        31.40        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75P TCGA-DH-5140 
       14.40        18.51        12.10        11.24        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-A669 TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
       31.82        46.06        30.21        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5852 TCGA-DU-5854 
       17.46        13.71        18.02        14.56         6.74         8.45 
TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 
      182.33        15.16        52.11        22.42        46.06         1.22 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6410 
        7.04        11.64       133.74        19.89        16.83         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 
        2.40        11.47       154.36        14.99         6.54         8.84 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 
       30.67        26.30        10.36         7.96        94.32        44.02 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8164 
       62.01        60.30         5.10        23.74        14.60        21.40 
TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TT TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       19.13        14.17        24.43        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76R TCGA-DU-A7T6 
       95.11        22.29        11.41        26.76        21.30        17.98 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5311 
       51.52        37.38         7.50        44.42         0.56       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YJ TCGA-E1-A7YL TCGA-E1-A7YM 
       78.21        95.57        14.30        19.46        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YY 
       23.90        75.02        51.88        15.32         0.76       146.14 
TCGA-E1-A7Z2 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6688 
       13.08        39.48         0.23        47.77        52.21        18.77 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       18.44        15.35        40.08        20.61        20.09        28.34 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A60J 
       16.01        20.09        22.52        10.72        18.38        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Z 
       17.82        21.53        15.02        16.44        22.26        10.78 
TCGA-FG-A710 TCGA-FG-A87N TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7471 
       36.66        18.64         5.72         0.10         6.67         0.13 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7605 
       40.34        75.19        95.93         5.03        29.85         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-7620 
       17.29         3.16        22.06        45.99         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7691 
       16.24         0.76        44.68         6.05         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7860 
        2.96         6.90        14.53        39.48        39.09         0.49 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-8010 
       37.15         0.33         0.13        35.47         3.72         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8015 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       16.24         9.40         0.10        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.10         0.46         5.56        13.78         0.23        29.59 
TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R9 TCGA-HT-A5RA 
       13.74        15.72         0.23        26.04         0.07        27.35 
TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        5.33        16.93        16.14        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74K TCGA-HT-A74L TCGA-HW-7486 TCGA-HW-7487 
       17.65         2.43        15.35        11.05        56.58        13.45 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       68.32        35.44        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EX TCGA-P5-A5EY 
       12.76        42.77        14.40        14.40         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72Z 
        2.30         4.11         0.76         1.28         0.23        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
       10.95         9.01        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
        4.41        15.16        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       14.83        14.53        12.23         2.20         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.34         5.03        11.08        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       59.38        30.87         5.46        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       30.67        87.12        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       24.39        29.85        32.61       123.65        75.25       135.22 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP 
       38.56        84.99        31.10        19.86        26.47        18.64 
TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       36.13        26.93        23.51        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       20.68        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84B 
       30.05        20.48        54.77        49.32        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84J TCGA-TM-A84M 
       16.18        59.05        40.64        30.44        24.16        24.79 
TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI 
       33.24        18.61        14.93        21.37        19.69         2.04 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU 
       36.69        33.73        31.20        30.05        26.14        33.93 
TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       31.36        43.20        13.51         0.10         7.89        39.16 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A859 TCGA-WY-A85C 
       39.88        46.88 

  ATRX MUTATED ATRX WILD-TYPE 
          0.03           0.07 
  ATRX MUTATED ATRX WILD-TYPE 
        211.17         182.33 
  ATRX MUTATED ATRX WILD-TYPE 
         24.23          14.93 
[1] "0.0 - 211.2 (24.2)" "0.1 - 182.3 (14.9)"
[1] "hr=" "3.1"
D3V2, continuous
D3V3, binary
                cls
clus               0   1
  ATRX MUTATED    16 194
  ATRX WILD-TYPE 262 318
[1] "tbl2"
                cls
clus             [,1] [,2]
  ATRX MUTATED     16  194
  ATRX WILD-TYPE  262  318
                        clus
vv                       ATRX MUTATED ATRX WILD-TYPE
  BRAIN                            16            262
  CENTRAL NERVOUS SYSTEM          194            318
[1] 2 2
[1] FALSE
D3V4, binary
                cls
clus               0   1
  ATRX MUTATED    92 118
  ATRX WILD-TYPE 237 343
[1] "tbl2"
                cls
clus             [,1] [,2]
  ATRX MUTATED     92  118
  ATRX WILD-TYPE  237  343
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  FEMALE           92            237
  MALE            118            343
[1] 2 2
[1] FALSE
D3V5, binary
                cls
clus               0   1
  ATRX MUTATED    60 138
  ATRX WILD-TYPE 172 370
[1] "tbl2"
                cls
clus             [,1] [,2]
  ATRX MUTATED     60  138
  ATRX WILD-TYPE  172  370
     clus
vv    ATRX MUTATED ATRX WILD-TYPE
  NO            60            172
  YES          138            370
[1] 2 2
[1] FALSE
D3V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ATRX MUTATED            96                             1               64
  ATRX WILD-TYPE          96                             8               66
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ATRX MUTATED                  34                   0
  ATRX WILD-TYPE               156                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  ATRX MUTATED                                15
  ATRX WILD-TYPE                             250
D3V7, multiclass
                                 clus
vv                                ATRX MUTATED ATRX WILD-TYPE
  ASTROCYTOMA                               96             96
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                          64             66
  OLIGODENDROGLIOMA                         34            156
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           15            250
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ATRX MUTATED                                  0     3
  ATRX WILD-TYPE                                1    10
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  ATRX MUTATED                           9   197
  ATRX WILD-TYPE                        29   525
D3V8, multiclass
                                  clus
vv                                 ATRX MUTATED ATRX WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       3             10
  BLACK OR AFRICAN AMERICAN                   9             29
  WHITE                                     197            525
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V9, binary
                cls
clus               0   1
  ATRX MUTATED    12 183
  ATRX WILD-TYPE  23 483
[1] "tbl2"
                cls
clus             [,1] [,2]
  ATRX MUTATED     12  183
  ATRX WILD-TYPE   23  483
                        clus
vv                       ATRX MUTATED ATRX WILD-TYPE
  HISPANIC OR LATINO               12             23
  NOT HISPANIC OR LATINO          183            483
[1] 2 2
[1] FALSE

Clustering(4) Variable = CIC MUTATION ANALYSIS
D4V1, survival
               sevent
clus2             0   1
  CIC MUTATED    96  12
  CIC WILD-TYPE 357 322
  CIC MUTATED CIC WILD-TYPE 
          108           679 
  CIC MUTATED CIC WILD-TYPE 
           12           322 
$`CIC MUTATED`
TCGA-27-2521 TCGA-CS-5394 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 TCGA-DB-5278 
       10.39         0.10        49.94         6.61        75.25        91.13 
TCGA-DB-A4XA TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U 
       18.84        24.20        30.12         5.98        31.40        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A75K TCGA-DH-5141 TCGA-DH-5144 TCGA-DH-A66F 
       29.23        14.40        12.10        31.82         8.02        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DU-5870 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6400 
       54.25        23.21       182.33       211.17        52.11         1.22 
TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7302 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 
       30.67        94.32        60.30        14.17        25.55        21.57 
TCGA-DU-A6S8 TCGA-DU-A7T6 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-A7YO 
       22.29        17.98       134.27        78.21        95.57        75.02 
TCGA-E1-A7YY TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7638 
      146.14        39.48        47.77        52.21        15.35        22.55 
TCGA-FG-7641 TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A710 TCGA-FG-A713 TCGA-HT-7468 
       20.61        17.82        15.02        36.66        20.45         6.67 
TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7602 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7677 
        0.13        75.19        29.85        22.06         0.23        16.24 
TCGA-HT-7681 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-8012 
       44.68         6.90        14.53         0.33         0.13         9.40 
TCGA-HT-8105 TCGA-HT-A4DV TCGA-HT-A5R9 TCGA-HT-A619 TCGA-HW-7487 TCGA-HW-7491 
        6.25        26.04         0.07        21.40        13.45        68.32 
TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5F0 TCGA-P5-A72Z TCGA-P5-A77W TCGA-P5-A77X 
       42.77        14.40         4.11        11.64        19.20         3.45 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       12.62        15.85        14.04         2.20         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.34        16.73        11.08        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-S9-A6TW TCGA-S9-A6U2 TCGA-S9-A6U5 
       59.38        30.87         5.46        41.10        29.85        32.61 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A7IY TCGA-S9-A7J1 
      123.65        75.25       135.22        38.56        23.51         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QZ TCGA-TM-A7C5 TCGA-TM-A84M TCGA-TM-A84O 
        2.04        20.68        27.16        49.32        24.79        33.24 
TCGA-TQ-A7RI TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-VM-A8CB TCGA-VM-A8CE 
        2.04        31.20        26.14        33.93         0.10        39.16 

$`CIC WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        18.08        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       64.64        40.18        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 
       23.84        17.95        12.43        46.95         7.56        49.12 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5279 
      122.73        81.96        47.93        72.92        50.86        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        78.28        46.42        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64S 
       37.45        33.57        72.95        31.63        25.48        27.45 
TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G 
       63.88        46.06        30.21        42.05        27.81        17.19 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         8.45         6.81        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       15.16        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 
       90.77        26.30        10.36         7.96        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       62.01        25.91        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       15.48        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A76K TCGA-DU-A76L 
       24.99        33.96        95.11        20.98        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       17.16        21.30       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       79.99        57.93       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7Z2 
       51.88        15.32         0.76        32.45        36.82        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
       73.48       145.05        32.35         0.23         0.20        25.48 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       17.88        40.08        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L 
       10.72        18.38        18.71        23.70        14.76        21.53 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A87N 
       16.44        22.26        28.54        10.78        48.69        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 
        5.72        27.52         0.10        11.54        40.11         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 
       23.18       122.47         4.57        17.29         3.16        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 
       56.09        57.60        14.27         0.16         0.76         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        2.96        17.52        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7879 TCGA-HT-7880 
       50.63         0.49        23.61        37.15         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A5R5 
       34.19        13.74        28.27        15.72         0.23         0.13 
TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
       20.22        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
        1.81        16.14        16.83         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       41.49        45.60        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       13.25        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A6CS 
       12.23         2.37         4.41        15.16         2.53        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-QH-A6X9 
       14.83        14.53        13.61        12.23        10.29         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       16.50         5.03        12.99         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX 
       19.59        30.67        62.17        87.12        18.77        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U6 TCGA-S9-A6U8 
       35.38        36.82        24.39        25.81        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       95.93         5.85        85.55        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
       26.93        19.99        20.02        15.06        18.54        28.37 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF 
       18.71        20.48        54.77        48.33        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.16        40.83        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       21.37        19.69        15.98        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       33.73        30.05        25.87        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CD TCGA-VM-A8CF TCGA-VM-A8CH 
       43.04        43.20        13.51         7.89        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  CIC MUTATED CIC WILD-TYPE 
         0.07          0.03 
  CIC MUTATED CIC WILD-TYPE 
       211.17        172.77 
  CIC MUTATED CIC WILD-TYPE 
        22.88         16.14 
[1] "0.1 - 211.2 (22.9)" "0.0 - 172.8 (16.1)"
[1] "hr=" "6.2"
D4V2, continuous
D4V3, binary
               cls
clus              0   1
  CIC MUTATED     1 108
  CIC WILD-TYPE 277 404
[1] "tbl2"
               cls
clus            [,1] [,2]
  CIC MUTATED      1  108
  CIC WILD-TYPE  277  404
                        clus
vv                       CIC MUTATED CIC WILD-TYPE
  BRAIN                            1           277
  CENTRAL NERVOUS SYSTEM         108           404
[1] 2 2
[1] FALSE
D4V4, binary
               cls
clus              0   1
  CIC MUTATED    53  56
  CIC WILD-TYPE 276 405
[1] "tbl2"
               cls
clus            [,1] [,2]
  CIC MUTATED     53   56
  CIC WILD-TYPE  276  405
        clus
vv       CIC MUTATED CIC WILD-TYPE
  FEMALE          53           276
  MALE            56           405
[1] 2 2
[1] FALSE
D4V5, binary
               cls
clus              0   1
  CIC MUTATED    60  42
  CIC WILD-TYPE 172 466
[1] "tbl2"
               cls
clus            [,1] [,2]
  CIC MUTATED     60   42
  CIC WILD-TYPE  172  466
     clus
vv    CIC MUTATED CIC WILD-TYPE
  NO           60           172
  YES          42           466
[1] 2 2
[1] FALSE
D4V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CIC MUTATED             3                             0               23
  CIC WILD-TYPE         189                             9              107
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CIC MUTATED                  82                   0
  CIC WILD-TYPE               108                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  CIC MUTATED                                 1
  CIC WILD-TYPE                             264
D4V7, multiclass
                                 clus
vv                                CIC MUTATED CIC WILD-TYPE
  ASTROCYTOMA                               3           189
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                         23           107
  OLIGODENDROGLIOMA                        82           108
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           1           264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CIC MUTATED                                  0     2
  CIC WILD-TYPE                                1    11
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  CIC MUTATED                           3   101
  CIC WILD-TYPE                        35   621
D4V8, multiclass
                                  clus
vv                                 CIC MUTATED CIC WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      2            11
  BLACK OR AFRICAN AMERICAN                  3            35
  WHITE                                    101           621
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V9, binary
               cls
clus              0   1
  CIC MUTATED     8  96
  CIC WILD-TYPE  27 570
[1] "tbl2"
               cls
clus            [,1] [,2]
  CIC MUTATED      8   96
  CIC WILD-TYPE   27  570
                        clus
vv                       CIC MUTATED CIC WILD-TYPE
  HISPANIC OR LATINO               8            27
  NOT HISPANIC OR LATINO          96           570
[1] 2 2
[1] FALSE

Clustering(5) Variable = NF1 MUTATION ANALYSIS
D5V1, survival
               sevent
clus2             0   1
  NF1 MUTATED    23  39
  NF1 WILD-TYPE 430 295
  NF1 MUTATED NF1 WILD-TYPE 
           62           725 
  NF1 MUTATED NF1 WILD-TYPE 
           39           295 
$`NF1 MUTATED`
TCGA-02-0033 TCGA-06-0119 TCGA-06-0124 TCGA-06-0184 TCGA-06-0192 TCGA-06-0214 
        2.83         2.70        20.38        69.90        38.96        15.02 
TCGA-06-2562 TCGA-06-2569 TCGA-06-5410 TCGA-06-5412 TCGA-06-6698 TCGA-14-0789 
       12.56         0.43         3.55         4.54         4.77        11.24 
TCGA-14-0871 TCGA-14-1043 TCGA-19-2620 TCGA-19-5953 TCGA-26-5133 TCGA-28-2502 
       28.93         0.79         4.87         4.73        14.86         0.66 
TCGA-28-5208 TCGA-28-6450 TCGA-32-1980 TCGA-32-1986 TCGA-32-2494 TCGA-41-3392 
       17.88         5.42         1.18        12.69        20.78         0.99 
TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 TCGA-76-6657 TCGA-76-6663 TCGA-CS-5397 
        0.20        12.46        20.91         5.03        18.64         6.38 
TCGA-DB-A4XG TCGA-DB-A64O TCGA-DB-A75K TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-6392 
       72.95        25.48        12.10        19.96        18.02       211.17 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6402 TCGA-DU-7006 TCGA-DU-7299 TCGA-DU-A76L 
       22.42        46.06         7.04        11.47        44.02        26.76 
TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-A87N TCGA-HT-7608 TCGA-HT-7857 TCGA-HT-7860 
       25.48        18.77        18.64        22.06         0.23         0.49 
TCGA-HT-7880 TCGA-HT-8010 TCGA-HT-8564 TCGA-HT-A4DS TCGA-QH-A6CS TCGA-QH-A6CX 
        5.33         1.64        15.72         0.23        19.33        12.23 
TCGA-S9-A6UA TCGA-S9-A6WP TCGA-S9-A7IX TCGA-S9-A89V TCGA-TM-A84C TCGA-TQ-A7RI 
        5.85        18.64        26.93        18.71        16.18         2.04 
TCGA-TQ-A7RP TCGA-VM-A8CD 
       30.05         7.89 

$`NF1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       20.32         6.15         6.94        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       25.35        26.70        11.90         0.20        10.29         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
       10.82        10.65         5.85        11.41        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 
        4.47         3.22        88.14        73.84        44.58        15.42 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.40         7.63         0.53        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
       30.64         5.95        16.64         4.37        31.50        11.74 
TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        8.35         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        1.48       120.56         7.36         8.32        12.85         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 
       11.97         0.95        23.05         2.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
        5.39         2.89         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        9.67         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 
        4.50         6.64        17.19         8.02        18.90        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
        9.40         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.53         1.22         3.12         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        11.28         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 
       11.01        13.64         5.16        22.68        10.49        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 
        0.10        19.50         4.67        16.93        12.23        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
       13.35         8.94         9.53         4.44        11.84        15.12 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        3.45         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6664 
        8.35        20.98         4.83        23.90        34.45        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        9.96        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P 
       39.78        37.45        33.57        31.63        24.20        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 
       18.51        11.24        17.88        30.74        16.18        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.61        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 
       49.02        75.16        65.75         1.22        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        2.40        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       11.41        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
        0.20        47.77        52.21        36.82        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       48.69        20.45         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 
       23.18       122.47         4.57        17.29         3.16        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 
       14.53        39.48        19.23        39.09        50.63        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.33         0.13         3.68        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       11.28        31.43        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       13.74        28.27        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV 
        2.53        12.62        15.85        14.04        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       13.61         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
       95.93       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ 
       84.99        31.10        19.86        26.47        18.61        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
       36.13         7.92        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       24.92        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        21.37        19.69        15.98        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       36.69        33.73        31.20        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        0.10        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  NF1 MUTATED NF1 WILD-TYPE 
         0.20          0.03 
  NF1 MUTATED NF1 WILD-TYPE 
       211.17        182.33 
  NF1 MUTATED NF1 WILD-TYPE 
       12.625        17.060 
[1] "0.2 - 211.2 (12.6)" "0.0 - 182.3 (17.1)"
[1] "hr=" "2.1"
D5V2, continuous
D5V3, binary
               cls
clus              0   1
  NF1 MUTATED    29  33
  NF1 WILD-TYPE 249 479
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     29   33
  NF1 WILD-TYPE  249  479
                        clus
vv                       NF1 MUTATED NF1 WILD-TYPE
  BRAIN                           29           249
  CENTRAL NERVOUS SYSTEM          33           479
[1] 2 2
[1] FALSE
D5V4, binary
               cls
clus              0   1
  NF1 MUTATED    24  38
  NF1 WILD-TYPE 305 423
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     24   38
  NF1 WILD-TYPE  305  423
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  FEMALE          24           305
  MALE            38           423
[1] 2 2
[1] FALSE
D5V5, binary
               cls
clus              0   1
  NF1 MUTATED    16  42
  NF1 WILD-TYPE 216 466
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     16   42
  NF1 WILD-TYPE  216  466
     clus
vv    NF1 MUTATED NF1 WILD-TYPE
  NO           16           216
  YES          42           466
[1] 2 2
[1] FALSE
D5V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NF1 MUTATED            20                             1                7
  NF1 WILD-TYPE         172                             8              123
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NF1 MUTATED                   6                   0
  NF1 WILD-TYPE               184                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  NF1 MUTATED                                28
  NF1 WILD-TYPE                             237
D5V7, multiclass
                                 clus
vv                                NF1 MUTATED NF1 WILD-TYPE
  ASTROCYTOMA                              20           172
  GLIOBLASTOMA MULTIFORME (GBM)             1             8
  OLIGOASTROCYTOMA                          7           123
  OLIGODENDROGLIOMA                         6           184
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          28           237
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NF1 MUTATED                                  0     1
  NF1 WILD-TYPE                                1    12
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  NF1 MUTATED                           4    56
  NF1 WILD-TYPE                        34   666
D5V8, multiclass
                                  clus
vv                                 NF1 MUTATED NF1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      1            12
  BLACK OR AFRICAN AMERICAN                  4            34
  WHITE                                     56           666
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V9, binary
               cls
clus              0   1
  NF1 MUTATED     4  49
  NF1 WILD-TYPE  31 617
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED      4   49
  NF1 WILD-TYPE   31  617
                        clus
vv                       NF1 MUTATED NF1 WILD-TYPE
  HISPANIC OR LATINO               4            31
  NOT HISPANIC OR LATINO          49           617
[1] 2 2
[1] FALSE

Clustering(6) Variable = PIK3R1 MUTATION ANALYSIS
D6V1, survival
                  sevent
clus2                0   1
  PIK3R1 MUTATED    23  30
  PIK3R1 WILD-TYPE 430 304
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              53              734 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              30              304 
$`PIK3R1 MUTATED`
TCGA-02-0003 TCGA-06-0128 TCGA-06-0129 TCGA-06-0750 TCGA-06-0877 TCGA-06-2562 
        4.73        22.72        33.67         0.92         5.65        12.56 
TCGA-06-6388 TCGA-06-6695 TCGA-12-0688 TCGA-14-0790 TCGA-14-0862 TCGA-14-1456 
        5.23         8.32        26.66        13.78         2.89        40.96 
TCGA-15-1444 TCGA-19-2629 TCGA-19-5947 TCGA-19-5951 TCGA-19-5955 TCGA-19-5958 
       50.53        24.23         6.64         8.02         1.78        14.07 
TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-32-1991 TCGA-32-2634 TCGA-41-3915 
        1.58         2.33         7.30        16.93        22.78        11.84 
TCGA-74-6573 TCGA-74-6575 TCGA-76-4927 TCGA-76-4929 TCGA-76-6280 TCGA-76-6656 
        3.45        20.91        17.59         3.65        11.38         4.83 
TCGA-76-6657 TCGA-76-6662 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5394 TCGA-CS-6188 
        5.03        34.45        43.89        10.62         0.10        23.84 
TCGA-DB-5279 TCGA-DU-5870 TCGA-DU-6392 TCGA-DU-6394 TCGA-DU-7300 TCGA-DU-A7TB 
       44.52       182.33       211.17        22.42        62.01        51.52 
TCGA-DU-A7TJ TCGA-E1-A7YE TCGA-E1-A7YS TCGA-FG-5962 TCGA-FG-8188 TCGA-HT-7481 
        0.56        29.13        15.32        47.77        14.96        95.93 
TCGA-HT-7694 TCGA-HT-A74K TCGA-KT-A74X TCGA-QH-A6X8 TCGA-S9-A7IY 
        6.90        15.35        14.40        16.73        23.51 

$`PIK3R1 WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        2.83        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 
       20.32         2.70         6.15        20.38         6.94        12.95 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       25.35        26.70        11.90         0.20        10.29         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
       10.82        10.65         5.85        11.41        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        4.47         3.22        88.14        69.90        73.84        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       26.76        13.61        15.32         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       17.65        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        4.57         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0692 TCGA-12-0821 
       15.35        14.73        12.99        34.92         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
       11.24         1.35         5.39        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       58.78        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.42        13.78         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.00         4.50        17.19        18.90         4.73        12.10 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 
        5.49         8.88        18.97         7.92         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        0.66         4.77         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
       19.50         1.18         4.67        12.69        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.02        15.95         8.84        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
       15.12        12.46         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       23.90        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5395 
        4.70         7.69        18.15        64.64        40.18        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        9.96         6.38        17.69        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5280 
       75.25        47.93        72.92        50.86        91.13        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 
       17.46         6.74        13.38         8.45         6.81        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        52.11        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 
        7.96        94.32        18.94        44.02        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 
       84.33        37.38         7.50        44.42        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
      130.78        14.30        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU 
       16.18        21.30        23.90        75.02        51.88         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        39.48         0.23         0.20        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 
       28.34        13.68        14.24        16.01        20.09        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7482 TCGA-HT-7483 
       24.26         6.38        40.34        75.19       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        0.10         2.96        17.52        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74L 
        6.38        17.52        17.65         2.43        10.52        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A7W1 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.34         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       26.93        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            0.10             0.03 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
          211.17           172.77 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           14.96            17.01 
[1] "0.1 - 211.2 (15.0)" "0.0 - 172.8 (17.0)"
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED    32  22
  PIK3R1 WILD-TYPE 246 490
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED     32   22
  PIK3R1 WILD-TYPE  246  490
                        clus
vv                       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  BRAIN                              32              246
  CENTRAL NERVOUS SYSTEM             22              490
[1] 2 2
[1] FALSE
D6V4, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED    16  38
  PIK3R1 WILD-TYPE 313 423
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED     16   38
  PIK3R1 WILD-TYPE  313  423
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  FEMALE             16              313
  MALE               38              423
[1] 2 2
[1] FALSE
D6V5, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED    11  39
  PIK3R1 WILD-TYPE 221 469
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED     11   39
  PIK3R1 WILD-TYPE  221  469
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  NO              11              221
  YES             39              469
[1] 2 2
[1] FALSE
D6V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PIK3R1 MUTATED             8                             1                3
  PIK3R1 WILD-TYPE         184                             8              127
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PIK3R1 MUTATED                  11                   0
  PIK3R1 WILD-TYPE               179                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PIK3R1 MUTATED                                31
  PIK3R1 WILD-TYPE                             234
D6V7, multiclass
                                 clus
vv                                PIK3R1 MUTATED PIK3R1 WILD-TYPE
  ASTROCYTOMA                                  8              184
  GLIOBLASTOMA MULTIFORME (GBM)                1                8
  OLIGOASTROCYTOMA                             3              127
  OLIGODENDROGLIOMA                           11              179
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM             31              234
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PIK3R1 MUTATED                                  0     2
  PIK3R1 WILD-TYPE                                1    11
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PIK3R1 MUTATED                           5    44
  PIK3R1 WILD-TYPE                        33   678
D6V8, multiclass
                                  clus
vv                                 PIK3R1 MUTATED PIK3R1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         2               11
  BLACK OR AFRICAN AMERICAN                     5               33
  WHITE                                        44              678
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V9, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED     0  44
  PIK3R1 WILD-TYPE  35 622
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      0   44
  PIK3R1 WILD-TYPE   35  622
                        clus
vv                       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO             44              622
[1] 2 2
[1] FALSE

Clustering(7) Variable = NOTCH1 MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2                0   1
  NOTCH1 MUTATED    34   7
  NOTCH1 WILD-TYPE 419 327
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              41              746 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
               7              327 
$`NOTCH1 MUTATED`
TCGA-CS-5390 TCGA-CS-6668 TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A75K TCGA-DH-5144 
       64.64        49.94        72.95        24.20        12.10         8.02 
TCGA-DH-A66B TCGA-DU-6392 TCGA-DU-6394 TCGA-DU-6400 TCGA-DU-7018 TCGA-DU-7300 
       42.05       211.17        22.42         1.22        30.67        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-8168 TCGA-DU-A5TR TCGA-DU-A6S3 TCGA-E1-5311 
       25.91        60.30        14.17        29.85        21.57       134.27 
TCGA-FG-5962 TCGA-FG-7638 TCGA-FG-8186 TCGA-FG-A710 TCGA-HT-7470 TCGA-HT-7481 
       47.77        22.55        16.01        36.66        40.11        95.93 
TCGA-HT-7875 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-A616 TCGA-HW-8322 TCGA-HW-A5KJ 
        0.33         9.40         6.25         1.81         6.18        10.55 
TCGA-IK-8125 TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-QH-A6CW TCGA-QH-A6X3 TCGA-R8-A6ML 
       42.77         4.11         7.63        13.61        10.29        94.03 
TCGA-S9-A6U5 TCGA-TM-A7CF TCGA-TM-A84G TCGA-VV-A829 TCGA-VW-A7QS 
       32.61        65.39        40.64        37.05        23.21 

$`NOTCH1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       10.62        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       33.57        31.63        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75L 
       27.45        27.81        29.23        14.40        18.51        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       46.06        30.21        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6395 TCGA-DU-6396 
       18.94        17.49        15.16        52.11        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.75        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        6.54         8.84        90.77        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       94.32        18.94        44.02        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       16.96        15.48        33.27        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       24.99        33.96        25.55        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5318 
       50.14        67.46        41.13        79.99        57.93        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
        0.20        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8187 
       20.61        20.09        28.34        13.68        14.24        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        28.54        10.78        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7482 TCGA-HT-7483 
       24.26         6.38        40.34        75.19       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
       37.15         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8015 
       11.28        31.43         1.64        16.24        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       37.87        33.01        12.23         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       40.01        42.54        12.76        20.81        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        2.30         5.88         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 
       14.83        14.53        12.23         2.20         9.17        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       24.39        25.81        29.85        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H 
       49.32        34.78        24.92        16.18        59.05        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A8FI TCGA-W9-A837 
       39.16        20.02        23.47        16.01         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
            0.33             0.03 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
          211.17           182.33 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
          25.910           16.585 
[1] "0.3 - 211.2 (25.9)" "0.0 - 182.3 (16.6)"
[1] "hr=" "3.7"
D7V2, continuous
D7V3, binary
                  cls
clus                 0   1
  NOTCH1 MUTATED     0  42
  NOTCH1 WILD-TYPE 278 470
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NOTCH1 MUTATED      0   42
  NOTCH1 WILD-TYPE  278  470
                        clus
vv                       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM             42              470
[1] 2 2
[1] FALSE
D7V4, binary
                  cls
clus                 0   1
  NOTCH1 MUTATED    20  22
  NOTCH1 WILD-TYPE 309 439
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NOTCH1 MUTATED     20   22
  NOTCH1 WILD-TYPE  309  439
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  FEMALE             20              309
  MALE               22              439
[1] 2 2
[1] FALSE
D7V5, binary
                  cls
clus                 0   1
  NOTCH1 MUTATED    18  21
  NOTCH1 WILD-TYPE 214 487
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NOTCH1 MUTATED     18   21
  NOTCH1 WILD-TYPE  214  487
     clus
vv    NOTCH1 MUTATED NOTCH1 WILD-TYPE
  NO              18              214
  YES             21              487
[1] 2 2
[1] FALSE
D7V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NOTCH1 MUTATED             6                             0                7
  NOTCH1 WILD-TYPE         186                             9              123
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NOTCH1 MUTATED                  29                   0
  NOTCH1 WILD-TYPE               161                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  NOTCH1 MUTATED                                 0
  NOTCH1 WILD-TYPE                             265
D7V7, multiclass
                                 clus
vv                                NOTCH1 MUTATED NOTCH1 WILD-TYPE
  ASTROCYTOMA                                  6              186
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             7              123
  OLIGODENDROGLIOMA                           29              161
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NOTCH1 MUTATED                                  0     1
  NOTCH1 WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  NOTCH1 MUTATED                           0    41
  NOTCH1 WILD-TYPE                        38   681
D7V8, multiclass
                                  clus
vv                                 NOTCH1 MUTATED NOTCH1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        41              681
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V9, binary
                  cls
clus                 0   1
  NOTCH1 MUTATED     2  38
  NOTCH1 WILD-TYPE  33 628
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NOTCH1 MUTATED      2   38
  NOTCH1 WILD-TYPE   33  628
                        clus
vv                       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  HISPANIC OR LATINO                  2               33
  NOT HISPANIC OR LATINO             38              628
[1] 2 2
[1] FALSE

Clustering(8) Variable = IDH2 MUTATION ANALYSIS
D8V1, survival
                sevent
clus2              0   1
  IDH2 MUTATED    19   1
  IDH2 WILD-TYPE 434 333
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            767 
  IDH2 MUTATED IDH2 WILD-TYPE 
             1            333 
$`IDH2 MUTATED`
TCGA-DB-A4XG TCGA-DH-5141 TCGA-DH-A7UR TCGA-DU-5849 TCGA-DU-7309 TCGA-DU-A7TA 
       72.95        31.82        54.25        14.56         2.76        84.33 
TCGA-E1-5318 TCGA-FG-8189 TCGA-HT-7476 TCGA-HT-7681 TCGA-HT-7856 TCGA-HT-8113 
       78.21        22.52         6.54        44.68        39.09        29.59 
TCGA-HT-A5R9 TCGA-HW-7491 TCGA-P5-A730 TCGA-QH-A65X TCGA-S9-A6TY TCGA-S9-A7QY 
        0.07        68.32        10.95        15.85        35.38        28.37 
TCGA-TM-A84R TCGA-TQ-A7RO 
       18.61        31.20 

$`IDH2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       39.78        37.45        33.57        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       16.18        19.96        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT 
       42.05        27.81        17.19        17.19        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       13.71        18.61        18.02        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       60.30        23.31        41.98         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 
       67.46        41.13        79.99        57.93       134.27        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       16.01        20.09        14.96        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
       16.24         0.76         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       14.53        39.48        19.23         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
        0.23        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13        20.22        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       10.42        13.25        11.64         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
       15.16         2.53        12.62        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       15.06        18.54        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       24.79        33.24        25.38        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       33.73        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  IDH2 MUTATED IDH2 WILD-TYPE 
          0.07           0.03 
  IDH2 MUTATED IDH2 WILD-TYPE 
         84.33         211.17 
  IDH2 MUTATED IDH2 WILD-TYPE 
        30.395         16.640 
[1] "0.1 - 84.3 (30.4)"  "0.0 - 211.2 (16.6)"
[1] "hr=" "12" 
D8V2, continuous
D8V3, binary
                cls
clus               0   1
  IDH2 MUTATED     0  20
  IDH2 WILD-TYPE 278 492
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      0   20
  IDH2 WILD-TYPE  278  492
                        clus
vv                       IDH2 MUTATED IDH2 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM           20            492
[1] 2 2
[1] FALSE
D8V4, binary
                cls
clus               0   1
  IDH2 MUTATED     9  11
  IDH2 WILD-TYPE 320 450
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      9   11
  IDH2 WILD-TYPE  320  450
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  FEMALE            9            320
  MALE             11            450
[1] 2 2
[1] FALSE
D8V5, binary
                cls
clus               0   1
  IDH2 MUTATED     9  10
  IDH2 WILD-TYPE 223 498
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      9   10
  IDH2 WILD-TYPE  223  498
     clus
vv    IDH2 MUTATED IDH2 WILD-TYPE
  NO             9            223
  YES           10            498
[1] 2 2
[1] FALSE
D8V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  IDH2 MUTATED             1                             0                5
  IDH2 WILD-TYPE         191                             9              125
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  IDH2 MUTATED                  14                   0
  IDH2 WILD-TYPE               176                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  IDH2 MUTATED                                 0
  IDH2 WILD-TYPE                             265
D8V7, multiclass
                                 clus
vv                                IDH2 MUTATED IDH2 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           5            125
  OLIGODENDROGLIOMA                         14            176
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  IDH2 MUTATED                                  0     0
  IDH2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  IDH2 MUTATED                           2    18
  IDH2 WILD-TYPE                        36   704
D8V8, multiclass
                                  clus
vv                                 IDH2 MUTATED IDH2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   2             36
  WHITE                                      18            704
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V9, binary
                cls
clus               0   1
  IDH2 MUTATED     3  16
  IDH2 WILD-TYPE  32 650
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      3   16
  IDH2 WILD-TYPE   32  650
                        clus
vv                       IDH2 MUTATED IDH2 WILD-TYPE
  HISPANIC OR LATINO                3             32
  NOT HISPANIC OR LATINO           16            650
[1] 2 2
[1] FALSE

Clustering(9) Variable = FUBP1 MUTATION ANALYSIS
D9V1, survival
                 sevent
clus2               0   1
  FUBP1 MUTATED    41   6
  FUBP1 WILD-TYPE 412 328
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             740 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
              6             328 
$`FUBP1 MUTATED`
TCGA-CS-5390 TCGA-CS-5394 TCGA-DB-5274 TCGA-DB-A64L TCGA-DB-A64Q TCGA-DB-A64V 
       64.64         0.10        75.25        24.20         5.98        29.23 
TCGA-DB-A75K TCGA-DH-5144 TCGA-DH-A7UR TCGA-DU-6392 TCGA-DU-6394 TCGA-DU-6397 
       12.10         8.02        54.25       211.17        22.42        46.06 
TCGA-DU-7300 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-E1-5319 
       62.01        21.40        14.17        25.55        21.57        95.57 
TCGA-E1-A7YO TCGA-EZ-7264 TCGA-FG-A710 TCGA-HT-7467 TCGA-HT-7471 TCGA-HT-7481 
       75.02        39.48        36.66         0.10         0.13        95.93 
TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7694 TCGA-HT-8105 
       22.06         0.23        14.27        16.24         6.90         6.25 
TCGA-HT-A615 TCGA-HW-7487 TCGA-P5-A77X TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A86X 
       16.93        13.45         3.45         9.17        14.53        11.08 
TCGA-RY-A83Y TCGA-RY-A847 TCGA-S9-A6TX TCGA-S9-A6WP TCGA-S9-A7IY TCGA-S9-A7J1 
        5.46        30.67        28.14        18.64        23.51         8.19 
TCGA-S9-A7J3 TCGA-S9-A7QZ TCGA-TM-A84G TCGA-TM-A84M TCGA-VM-A8CB 
       20.68        27.16        40.64        24.79         0.10 

$`FUBP1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       10.62        40.18        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 
       49.12         6.61       122.73        81.96        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64R TCGA-DB-A64S 
       72.95        31.63        25.48        30.12        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       27.81        14.40        18.51        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-A669 
       16.18        19.96        31.82        63.88        46.06        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT 
       42.05        27.81        17.19        17.19        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6400 
       15.16        52.11        49.02        75.16        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       18.94        44.02        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 
        2.76         5.10        23.74        14.60        20.68        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       16.96        15.48        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       26.17        24.99        33.96        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       78.21       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YQ 
       19.46        12.43        16.18        21.30        23.90        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
       73.48       145.05        32.35         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 
       15.02        16.44        22.26        28.54        10.78        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-7469 
       20.45        18.64         5.72        27.52         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7482 TCGA-HT-7483 
       24.26         6.38        40.34        75.19       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7676 
       17.29         3.16        45.99        56.09        57.60         0.16 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7695 
       14.96         0.10         0.10         2.96        17.52        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        5.33         2.70         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
       11.05         0.10        56.58        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A780 TCGA-P5-A781 
        9.60         7.56        12.23        19.20         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 
       14.83        14.53        13.61        12.23         2.20        10.29 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 
       16.34        16.73         1.91        16.50         5.03        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Z 
       88.83        94.03        32.65        59.38        30.87         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
       28.08         2.07        19.59        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       41.10        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       19.86        26.47        18.61        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J2 TCGA-S9-A7QW TCGA-S9-A7QX 
       26.93        19.99        20.02         2.04        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       28.37       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84H 
       34.78        65.39        24.92        16.18        59.05        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       28.08        24.16        40.83        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.04        43.20        13.51         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  FUBP1 MUTATED FUBP1 WILD-TYPE 
           0.10            0.03 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
         211.17          182.33 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
          21.40           16.67 
[1] "0.1 - 211.2 (21.4)" "0.0 - 182.3 (16.7)"
[1] "hr=" "4.1"
D9V2, continuous
D9V3, binary
                 cls
clus                0   1
  FUBP1 MUTATED     0  47
  FUBP1 WILD-TYPE 278 465
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FUBP1 MUTATED      0   47
  FUBP1 WILD-TYPE  278  465
                        clus
vv                       FUBP1 MUTATED FUBP1 WILD-TYPE
  BRAIN                              0             278
  CENTRAL NERVOUS SYSTEM            47             465
[1] 2 2
[1] FALSE
D9V4, binary
                 cls
clus                0   1
  FUBP1 MUTATED    19  28
  FUBP1 WILD-TYPE 310 433
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FUBP1 MUTATED     19   28
  FUBP1 WILD-TYPE  310  433
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  FEMALE            19             310
  MALE              28             433
[1] 2 2
[1] FALSE
D9V5, binary
                 cls
clus                0   1
  FUBP1 MUTATED    22  20
  FUBP1 WILD-TYPE 210 488
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FUBP1 MUTATED     22   20
  FUBP1 WILD-TYPE  210  488
     clus
vv    FUBP1 MUTATED FUBP1 WILD-TYPE
  NO             22             210
  YES            20             488
[1] 2 2
[1] FALSE
D9V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FUBP1 MUTATED             2                             0                9
  FUBP1 WILD-TYPE         190                             9              121
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FUBP1 MUTATED                  36                   0
  FUBP1 WILD-TYPE               154                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  FUBP1 MUTATED                                 0
  FUBP1 WILD-TYPE                             265
D9V7, multiclass
                                 clus
vv                                FUBP1 MUTATED FUBP1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            9             121
  OLIGODENDROGLIOMA                          36             154
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             0             265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FUBP1 MUTATED                                  0     0
  FUBP1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  FUBP1 MUTATED                           2    43
  FUBP1 WILD-TYPE                        36   679
D9V8, multiclass
                                  clus
vv                                 FUBP1 MUTATED FUBP1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    2              36
  WHITE                                       43             679
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V9, binary
                 cls
clus                0   1
  FUBP1 MUTATED     0  43
  FUBP1 WILD-TYPE  35 623
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FUBP1 MUTATED      0   43
  FUBP1 WILD-TYPE   35  623
                        clus
vv                       FUBP1 MUTATED FUBP1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            43             623
[1] 2 2
[1] FALSE

Clustering(10) Variable = RB1 MUTATION ANALYSIS
D10V1, survival
               sevent
clus2             0   1
  RB1 MUTATED    10  19
  RB1 WILD-TYPE 443 315
  RB1 MUTATED RB1 WILD-TYPE 
           29           758 
  RB1 MUTATED RB1 WILD-TYPE 
           19           315 
$`RB1 MUTATED`
TCGA-02-0033 TCGA-06-0130 TCGA-06-0140 TCGA-06-0184 TCGA-06-0188 TCGA-06-0195 
        2.83        12.95         0.20        69.90        44.58         7.40 
TCGA-06-0213 TCGA-06-0939 TCGA-06-5858 TCGA-06-6698 TCGA-19-2623 TCGA-19-2625 
        0.53        26.76         6.15         4.77         7.53         4.08 
TCGA-26-5132 TCGA-27-2524 TCGA-32-1970 TCGA-32-2491 TCGA-32-2632 TCGA-32-2634 
        9.40         7.59        15.39        12.23         8.84        22.78 
TCGA-32-4213 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-81-5911 TCGA-DH-A669 
       19.86        20.98        34.45        18.64        17.72        30.21 
TCGA-DU-5847 TCGA-DU-6392 TCGA-DU-7290 TCGA-E1-A7YM TCGA-FG-6688 
       18.02       211.17        10.36        21.30        18.77 

$`RB1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 
       33.67        25.35        26.70        11.90        10.29         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
       10.82        10.65         5.85        11.41        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 
        4.47         3.22        88.14        73.84        15.42        38.96 
TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        7.63        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-1804 TCGA-06-1806 
        7.17        40.41        16.57        20.78        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        5.10         2.73         3.75         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        0.16        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
       16.80        14.96        13.87        31.33        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 
       13.64         5.16        22.68        10.49         5.42         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
       15.02        15.95        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06         8.35         4.83         5.03        23.90 
TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
       36.20         1.61        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       46.06         8.02        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 
       54.25        23.21        17.46        13.71        18.61        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       26.30         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       36.82        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  RB1 MUTATED RB1 WILD-TYPE 
         0.20          0.03 
  RB1 MUTATED RB1 WILD-TYPE 
       211.17        182.33 
  RB1 MUTATED RB1 WILD-TYPE 
        15.39         16.83 
[1] "0.2 - 211.2 (15.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.7"
D10V2, continuous
D10V3, binary
               cls
clus              0   1
  RB1 MUTATED    23   6
  RB1 WILD-TYPE 255 506
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED     23    6
  RB1 WILD-TYPE  255  506
                        clus
vv                       RB1 MUTATED RB1 WILD-TYPE
  BRAIN                           23           255
  CENTRAL NERVOUS SYSTEM           6           506
[1] 2 2
[1] FALSE
D10V4, binary
               cls
clus              0   1
  RB1 MUTATED    11  18
  RB1 WILD-TYPE 318 443
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED     11   18
  RB1 WILD-TYPE  318  443
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE          11           318
  MALE            18           443
[1] 2 2
[1] FALSE
D10V5, binary
               cls
clus              0   1
  RB1 MUTATED     6  22
  RB1 WILD-TYPE 226 486
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      6   22
  RB1 WILD-TYPE  226  486
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            6           226
  YES          22           486
[1] 2 2
[1] FALSE
D10V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  RB1 MUTATED             5                             1                0
  RB1 WILD-TYPE         187                             8              130
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  RB1 MUTATED                   1                   0
  RB1 WILD-TYPE               189                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  RB1 MUTATED                                22
  RB1 WILD-TYPE                             243
D10V7, multiclass
                                 clus
vv                                RB1 MUTATED RB1 WILD-TYPE
  ASTROCYTOMA                               5           187
  GLIOBLASTOMA MULTIFORME (GBM)             1             8
  OLIGOASTROCYTOMA                          0           130
  OLIGODENDROGLIOMA                         1           189
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          22           243
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RB1 MUTATED                                  0     0
  RB1 WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  RB1 MUTATED                           1    28
  RB1 WILD-TYPE                        37   694
D10V8, multiclass
                                  clus
vv                                 RB1 MUTATED RB1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  1            37
  WHITE                                     28           694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V9, binary
               cls
clus              0   1
  RB1 MUTATED     0  25
  RB1 WILD-TYPE  35 641
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0   25
  RB1 WILD-TYPE   35  641
                        clus
vv                       RB1 MUTATED RB1 WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO          25           641
[1] 2 2
[1] FALSE

Clustering(11) Variable = TCF12 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2               0   1
  TCF12 MUTATED    13   5
  TCF12 WILD-TYPE 440 329
  TCF12 MUTATED TCF12 WILD-TYPE 
             18             769 
  TCF12 MUTATED TCF12 WILD-TYPE 
              5             329 
$`TCF12 MUTATED`
TCGA-06-0128 TCGA-06-5414 TCGA-19-1790 TCGA-CS-6668 TCGA-DB-5270 TCGA-DB-A75O 
       22.72         8.98         5.06        49.94       122.73        30.74 
TCGA-DU-7018 TCGA-E1-5307 TCGA-E1-A7YW TCGA-FG-8182 TCGA-HT-7601 TCGA-HT-7875 
       30.67        57.93        36.82        13.68         5.03         0.33 
TCGA-HT-8011 TCGA-HT-8105 TCGA-S9-A6TZ TCGA-S9-A6U2 TCGA-S9-A6WH TCGA-TM-A84F 
       16.24         6.25        36.82        29.85        38.56        59.05 

$`TCF12 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5415 
       11.74         3.55         8.35         4.54         8.81         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-2619 
       50.53         3.91         4.31        29.03        25.38         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 
       17.95        12.43        46.95         7.56        49.12         6.61 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       17.88        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       90.77        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       41.13        79.99       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
        0.76        32.45       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       20.09        28.34        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      106.95       172.77         4.01        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       23.61        37.15         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28        31.43         1.64         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 
        0.10        37.87        33.01        12.23         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U5 
       41.10        28.14        35.38        24.39        25.81        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
      135.22        85.55        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       16.18        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  TCF12 MUTATED TCF12 WILD-TYPE 
           0.33            0.03 
  TCF12 MUTATED TCF12 WILD-TYPE 
         122.73          211.17 
  TCF12 MUTATED TCF12 WILD-TYPE 
          30.26           16.73 
[1] "0.3 - 122.7 (30.3)" "0.0 - 211.2 (16.7)"
[1] "hr=" "1.9"
D11V2, continuous
D11V3, binary
                 cls
clus                0   1
  TCF12 MUTATED     3  15
  TCF12 WILD-TYPE 275 497
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCF12 MUTATED      3   15
  TCF12 WILD-TYPE  275  497
                        clus
vv                       TCF12 MUTATED TCF12 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM            15             497
[1] 2 2
[1] FALSE
D11V4, binary
                 cls
clus                0   1
  TCF12 MUTATED     8  10
  TCF12 WILD-TYPE 321 451
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCF12 MUTATED      8   10
  TCF12 WILD-TYPE  321  451
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  FEMALE             8             321
  MALE              10             451
[1] 2 2
[1] FALSE
D11V5, binary
                 cls
clus                0   1
  TCF12 MUTATED     5  12
  TCF12 WILD-TYPE 227 496
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCF12 MUTATED      5   12
  TCF12 WILD-TYPE  227  496
     clus
vv    TCF12 MUTATED TCF12 WILD-TYPE
  NO              5             227
  YES            12             496
[1] 2 2
[1] FALSE
D11V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TCF12 MUTATED             6                             0                3
  TCF12 WILD-TYPE         186                             9              127
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TCF12 MUTATED                   6                   0
  TCF12 WILD-TYPE               184                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TCF12 MUTATED                                 3
  TCF12 WILD-TYPE                             262
D11V7, multiclass
                                 clus
vv                                TCF12 MUTATED TCF12 WILD-TYPE
  ASTROCYTOMA                                 6             186
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            3             127
  OLIGODENDROGLIOMA                           6             184
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TCF12 MUTATED                                  0     0
  TCF12 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  TCF12 MUTATED                           0    18
  TCF12 WILD-TYPE                        38   704
D11V8, multiclass
                                  clus
vv                                 TCF12 MUTATED TCF12 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                       18             704
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V9, binary
                 cls
clus                0   1
  TCF12 MUTATED     0  18
  TCF12 WILD-TYPE  35 648
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCF12 MUTATED      0   18
  TCF12 WILD-TYPE   35  648
                        clus
vv                       TCF12 MUTATED TCF12 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            18             648
[1] 2 2
[1] FALSE

Clustering(12) Variable = PIK3CA MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2                0   1
  PIK3CA MUTATED    38  32
  PIK3CA WILD-TYPE 415 302
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              70              717 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              32              302 
$`PIK3CA MUTATED`
TCGA-02-0033 TCGA-02-0047 TCGA-02-2485 TCGA-06-0119 TCGA-06-0166 TCGA-06-0879 
        2.83        14.73        15.45         2.70         5.85        40.41 
TCGA-06-2570 TCGA-06-5413 TCGA-06-5417 TCGA-06-6391 TCGA-12-5301 TCGA-15-0742 
       31.50         8.81         5.10         1.48         2.04        13.78 
TCGA-19-1790 TCGA-19-5947 TCGA-19-5954 TCGA-26-5136 TCGA-27-1838 TCGA-27-2527 
        5.06         6.64        12.10        18.97        11.51        14.40 
TCGA-28-6450 TCGA-32-2491 TCGA-41-2572 TCGA-41-5651 TCGA-74-6578 TCGA-76-4928 
        5.42        12.23        13.35        15.12        14.33         3.09 
TCGA-76-6193 TCGA-76-6286 TCGA-DB-A64Q TCGA-DB-A64V TCGA-DB-A64W TCGA-DU-6392 
        2.70        20.98         5.98        29.23        14.40       211.17 
TCGA-DU-6405 TCGA-DU-7006 TCGA-DU-7018 TCGA-DU-7298 TCGA-DU-8164 TCGA-DU-8165 
       19.89        11.47        30.67        18.94        21.40        19.13 
TCGA-DU-8168 TCGA-DU-A5TT TCGA-DU-A6S3 TCGA-DU-A76R TCGA-FG-5962 TCGA-FG-7634 
       14.17        24.43        21.57        21.30        47.77        15.35 
TCGA-FG-8187 TCGA-HT-7468 TCGA-HT-7478 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7607 
       20.09         6.67         6.38        95.93         4.57         3.16 
TCGA-HT-7620 TCGA-HT-7692 TCGA-HT-7874 TCGA-HT-7882 TCGA-HW-7491 TCGA-KT-A7W1 
       14.27         2.96        37.15         3.72        68.32        14.40 
TCGA-P5-A5F0 TCGA-P5-A72U TCGA-R8-A6MO TCGA-S9-A6TW TCGA-S9-A6U0 TCGA-S9-A6U2 
        4.11         0.23        32.65        41.10        24.39        29.85 
TCGA-S9-A6WN TCGA-S9-A7J1 TCGA-S9-A7R7 TCGA-TM-A84F TCGA-TM-A84S TCGA-TQ-A7RO 
       26.47         8.19        98.63        59.05        14.93        31.20 
TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VW-A8FI TCGA-WY-A85E 
       31.36        43.20         8.05        20.81 

$`PIK3CA WILD-TYPE`
TCGA-02-0003 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0122 
        4.73         2.50        12.92        15.32        20.32         6.15 
TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       20.38         6.94        22.72        33.67        12.95        25.35 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 
       26.70        11.90         0.20        10.29         2.20         2.33 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        12.33        13.94        10.45         3.19        10.82 
TCGA-06-0165 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 
       10.65        11.41        19.66         3.29         4.47         3.22 
TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 
       88.14        69.90        73.84        44.58        15.42        38.96 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.40         7.63         0.53        15.02        24.16         0.72 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 
       13.64        13.32        20.42        48.69        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         5.65         7.17        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
       11.74         3.55         8.35         4.54         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.39       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        0.39         3.42        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
       25.38         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         7.00         4.50        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
        4.73         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
       31.33         9.40        14.86         5.49         8.88         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       40.54        21.30        30.05        14.04        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 
       10.39        16.08         7.59         2.86        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       16.93        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85        19.23         0.85         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44        11.84         0.20        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 
        4.34         7.50         4.80         4.54        17.59         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06         8.35         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       31.40        27.45        27.81        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04        11.64       133.74        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
      114.08         7.96         2.40        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 
       14.99       105.21         6.54         8.84        90.77        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       10.36         7.96        94.32        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP TCGA-DU-A5TR 
       14.60        20.68        16.96        15.48        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 
       31.69        26.17        24.99        33.96        25.55        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A7T6 
       20.98        22.29        11.41        26.76        17.16        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.23         0.20        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 
       18.77        14.93        42.54        41.33        18.44        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        16.01        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        0.10        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 
        3.75        17.42         6.54        24.26        40.34        75.19 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
      122.47        17.29        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
        0.23         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63         0.49        23.61         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68         5.33        35.47        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       13.45        41.49        45.60        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       19.00        42.77        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.37         2.30         5.88         7.63         0.76         1.28 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TX 
       19.59        30.67        62.17        87.12        18.77        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       35.38        36.82        25.81        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        19.86        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
       20.02         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 
       27.16       169.84        10.39        99.06        30.05        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       65.39        24.92        16.18        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        33.73        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8CA TCGA-VM-A8CB 
       33.93        61.41        26.99        43.04        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
       23.21        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       45.80        46.88        37.71 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.23             0.03 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          211.17           182.33 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          14.565           17.060 
[1] "0.2 - 211.2 (14.6)" "0.0 - 182.3 (17.1)"
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    26  44
  PIK3CA WILD-TYPE 252 468
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     26   44
  PIK3CA WILD-TYPE  252  468
                        clus
vv                       PIK3CA MUTATED PIK3CA WILD-TYPE
  BRAIN                              26              252
  CENTRAL NERVOUS SYSTEM             44              468
[1] 2 2
[1] FALSE
D12V4, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    29  41
  PIK3CA WILD-TYPE 300 420
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     29   41
  PIK3CA WILD-TYPE  300  420
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             29              300
  MALE               41              420
[1] 2 2
[1] FALSE
D12V5, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    24  45
  PIK3CA WILD-TYPE 208 463
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     24   45
  PIK3CA WILD-TYPE  208  463
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO              24              208
  YES             45              463
[1] 2 2
[1] FALSE
D12V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PIK3CA MUTATED            13                             1                6
  PIK3CA WILD-TYPE         179                             8              124
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PIK3CA MUTATED                  25                   0
  PIK3CA WILD-TYPE               165                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PIK3CA MUTATED                                25
  PIK3CA WILD-TYPE                             240
D12V7, multiclass
                                 clus
vv                                PIK3CA MUTATED PIK3CA WILD-TYPE
  ASTROCYTOMA                                 13              179
  GLIOBLASTOMA MULTIFORME (GBM)                1                8
  OLIGOASTROCYTOMA                             6              124
  OLIGODENDROGLIOMA                           25              165
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM             25              240
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PIK3CA MUTATED                                  0     1
  PIK3CA WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PIK3CA MUTATED                           5    60
  PIK3CA WILD-TYPE                        33   662
D12V8, multiclass
                                  clus
vv                                 PIK3CA MUTATED PIK3CA WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     5               33
  WHITE                                        60              662
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V9, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     3  58
  PIK3CA WILD-TYPE  32 608
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      3   58
  PIK3CA WILD-TYPE   32  608
                        clus
vv                       PIK3CA MUTATED PIK3CA WILD-TYPE
  HISPANIC OR LATINO                  3               32
  NOT HISPANIC OR LATINO             58              608
[1] 2 2
[1] FALSE

Clustering(13) Variable = STK19 MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2               0   1
  STK19 MUTATED     9   2
  STK19 WILD-TYPE 444 332
  STK19 MUTATED STK19 WILD-TYPE 
             11             776 
  STK19 MUTATED STK19 WILD-TYPE 
              2             332 
$`STK19 MUTATED`
TCGA-12-0821 TCGA-DU-6392 TCGA-FG-A60J TCGA-HT-8015 TCGA-HT-A5R5 TCGA-HT-A5RA 
       10.62       211.17        14.76         0.10         0.13        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-S9-A7QY 
        0.10         5.33         5.88         7.63        28.37 

$`STK19 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       26.66         3.65        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.38        18.71        23.70        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 
        1.64        16.24         9.40        63.55        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A614 
       15.72         0.23        26.04        20.22         0.07         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        4.11         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       20.68        15.06        18.54        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  STK19 MUTATED STK19 WILD-TYPE 
           0.10            0.03 
  STK19 MUTATED STK19 WILD-TYPE 
         211.17          182.33 
  STK19 MUTATED STK19 WILD-TYPE 
           7.63           16.93 
[1] "0.1 - 211.2 (7.6)"  "0.0 - 182.3 (16.9)"
[1] "hr=" "2.3"
D13V2, continuous
D13V3, binary
                 cls
clus                0   1
  STK19 MUTATED     1  10
  STK19 WILD-TYPE 277 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      1   10
  STK19 WILD-TYPE  277  502
                        clus
vv                       STK19 MUTATED STK19 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM            10             502
[1] 2 2
[1] FALSE
D13V4, binary
                 cls
clus                0   1
  STK19 MUTATED     7   4
  STK19 WILD-TYPE 322 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      7    4
  STK19 WILD-TYPE  322  457
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  FEMALE             7             322
  MALE               4             457
[1] 2 2
[1] FALSE
D13V5, binary
                 cls
clus                0   1
  STK19 MUTATED     3   4
  STK19 WILD-TYPE 229 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      3    4
  STK19 WILD-TYPE  229  504
     clus
vv    STK19 MUTATED STK19 WILD-TYPE
  NO              3             229
  YES             4             504
[1] 2 2
[1] FALSE
D13V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  STK19 MUTATED             7                             0                2
  STK19 WILD-TYPE         185                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  STK19 MUTATED                   1                   0
  STK19 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  STK19 MUTATED                                 1
  STK19 WILD-TYPE                             264
D13V7, multiclass
                                 clus
vv                                STK19 MUTATED STK19 WILD-TYPE
  ASTROCYTOMA                                 7             185
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  STK19 MUTATED                                  0     0
  STK19 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  STK19 MUTATED                           0    11
  STK19 WILD-TYPE                        38   711
D13V8, multiclass
                                  clus
vv                                 STK19 MUTATED STK19 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                       11             711
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V9, binary
                 cls
clus                0   1
  STK19 MUTATED     2   9
  STK19 WILD-TYPE  33 657
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      2    9
  STK19 WILD-TYPE   33  657
                        clus
vv                       STK19 MUTATED STK19 WILD-TYPE
  HISPANIC OR LATINO                 2              33
  NOT HISPANIC OR LATINO             9             657
[1] 2 2
[1] FALSE

Clustering(14) Variable = PTEN MUTATION ANALYSIS
D14V1, survival
                sevent
clus2              0   1
  PTEN MUTATED    30  79
  PTEN WILD-TYPE 423 255
  PTEN MUTATED PTEN WILD-TYPE 
           109            678 
  PTEN MUTATED PTEN WILD-TYPE 
            79            255 
$`PTEN MUTATED`
TCGA-02-0055 TCGA-02-2470 TCGA-06-0124 TCGA-06-0155 TCGA-06-0157 TCGA-06-0166 
        2.50        12.92        20.38        10.45         3.19         5.85 
TCGA-06-0168 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0213 
       19.66        69.90        44.58        38.96         7.40         0.53 
TCGA-06-0216 TCGA-06-0644 TCGA-06-0649 TCGA-06-0743 TCGA-06-0749 TCGA-06-0875 
       24.16        12.62         2.10        26.40         2.70        43.46 
TCGA-06-0876 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2558 
       46.19        16.57        20.78        26.76        13.61        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2565 TCGA-06-5411 TCGA-06-5412 TCGA-06-5418 
        4.93        17.65        16.64         8.35         4.54         2.73 
TCGA-06-5858 TCGA-12-0618 TCGA-12-1597 TCGA-12-3649 TCGA-14-0781 TCGA-14-0813 
        6.15        12.99        22.19        15.22         0.95         1.35 
TCGA-14-1395 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-2625 TCGA-19-5952 
        1.38         3.91         4.31        29.03         4.08        18.90 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5959 TCGA-26-5132 TCGA-26-6174 TCGA-27-1834 
        4.73         1.78        16.80         9.40         2.33        40.54 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-28-1753 
       14.04        11.51        18.08         7.59         2.86         1.22 
TCGA-28-2502 TCGA-28-2513 TCGA-28-5209 TCGA-28-5216 TCGA-32-1977 TCGA-32-1982 
        0.66         7.30         2.53        13.64         0.10         4.67 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2634 TCGA-32-4210 TCGA-32-4213 TCGA-32-5222 
       16.93        15.02        22.78         3.72        19.86        19.23 
TCGA-41-2571 TCGA-41-2573 TCGA-41-3915 TCGA-41-4097 TCGA-74-6577 TCGA-76-4925 
        0.85         8.94        11.84         0.20         4.34         4.80 
TCGA-76-4927 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
       17.59         9.17         2.53        36.85        16.70         3.29 
TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6664 TCGA-81-5910 
       20.98         5.03        23.90        34.45        36.20         1.61 
TCGA-81-5911 TCGA-CS-5395 TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-6392 
       17.72        21.01        13.71        18.61        18.02       211.17 
TCGA-DU-6402 TCGA-DU-7012 TCGA-DU-7290 TCGA-DU-8158 TCGA-DU-A7TD TCGA-FG-6692 
        7.04         6.54        10.36         5.10         7.50        18.44 
TCGA-FG-A4MW TCGA-HT-7860 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-A5RA TCGA-QH-A6CS 
       18.38         0.49        16.24        12.23        27.35        19.33 
TCGA-QH-A6CX TCGA-QH-A6X3 TCGA-S9-A6TW TCGA-S9-A6U0 TCGA-TM-A84B TCGA-TQ-A7RP 
       12.23        10.29        41.10        24.39        24.92        30.05 
TCGA-VM-A8CD 
        7.89 

$`PTEN WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        4.73         2.83        14.73        15.32        15.45        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        2.70         6.15         6.94        22.72        33.67        12.95 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       25.35        26.70        11.90         0.20        10.29         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0158 TCGA-06-0165 
        2.33        46.59        12.33        13.94        10.82        10.65 
TCGA-06-0167 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 
       11.41         3.29         4.47         3.22        88.14        73.84 
TCGA-06-0189 TCGA-06-0209 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
       15.42         7.63        15.02         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
       20.42        48.69         5.75         5.75         9.80        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0877 
       14.20        46.88         7.86         2.70         0.92         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-1806 TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 
        7.17        40.41        15.32         1.08        12.56        30.64 
TCGA-06-2564 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.95         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5856 TCGA-06-5859 
        8.81         8.98         8.55         5.10         3.75         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       18.02        15.35        14.73        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.62        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        2.04        11.97        23.05         2.24        11.24        13.78 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1450 TCGA-14-1456 
        5.39         2.89        28.93         0.79        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
       13.78        50.53        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        7.53         0.16        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 
       17.19         8.02        12.10        14.07        14.96        13.87 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
       31.33        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 
        7.92         5.06        16.60         9.86        24.23        21.30 
TCGA-27-1836 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 TCGA-27-2528 
       30.05        24.76        10.39        16.08        14.40        15.78 
TCGA-28-1747 TCGA-28-2499 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        2.53         3.12         4.77         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       17.88        11.77        31.27        23.44        11.01         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1979 TCGA-32-1980 
       22.68        10.49         5.42        15.39        19.50         1.18 
TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 
       12.69        12.23        20.78        15.95         8.84        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4211 TCGA-32-4719 TCGA-41-2572 TCGA-41-2575 
       21.14        20.32        12.59        10.85        13.35         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        0.99         4.44        15.12        12.46         3.45        20.91 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4932 
       14.33         7.50         4.54         3.09         3.65        47.93 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6663 
        2.70        11.38        17.06         8.35         4.83        18.64 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       64.64        40.18         0.10         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       17.46        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       87.45        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
      154.36        14.99       105.21         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       26.30         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8161 
       25.91        60.30        23.31        41.98         2.76        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TJ 
      139.04        84.33        51.52        37.38        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        42.54        41.33        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       38.27        10.72        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       12.62        15.85        14.04        14.83        14.53        13.61 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        2.20         9.17        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       28.14        35.38        36.82        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        33.73        31.20        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.03 
  PTEN MUTATED PTEN WILD-TYPE 
        211.17         182.33 
  PTEN MUTATED PTEN WILD-TYPE 
        12.490         17.505 
[1] "0.1 - 211.2 (12.5)" "0.0 - 182.3 (17.5)"
[1] "hr=" "3"  
D14V2, continuous
D14V3, binary
                cls
clus               0   1
  PTEN MUTATED    85  24
  PTEN WILD-TYPE 193 488
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     85   24
  PTEN WILD-TYPE  193  488
                        clus
vv                       PTEN MUTATED PTEN WILD-TYPE
  BRAIN                            85            193
  CENTRAL NERVOUS SYSTEM           24            488
[1] 2 2
[1] FALSE
D14V4, binary
                cls
clus               0   1
  PTEN MUTATED    41  68
  PTEN WILD-TYPE 288 393
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     41   68
  PTEN WILD-TYPE  288  393
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE           41            288
  MALE             68            393
[1] 2 2
[1] FALSE
D14V5, binary
                cls
clus               0   1
  PTEN MUTATED    23  78
  PTEN WILD-TYPE 209 430
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     23   78
  PTEN WILD-TYPE  209  430
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO            23            209
  YES           78            430
[1] 2 2
[1] FALSE
D14V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PTEN MUTATED            17                             0                4
  PTEN WILD-TYPE         175                             9              126
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PTEN MUTATED                   3                   2
  PTEN WILD-TYPE               187                   2
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PTEN MUTATED                                83
  PTEN WILD-TYPE                             182
D14V7, multiclass
                                 clus
vv                                PTEN MUTATED PTEN WILD-TYPE
  ASTROCYTOMA                               17            175
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           4            126
  OLIGODENDROGLIOMA                          3            187
  TREATED PRIMARY GBM                        2              2
  UNTREATED PRIMARY (DE NOVO) GBM           83            182
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PTEN MUTATED                                  0     1
  PTEN WILD-TYPE                                1    12
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PTEN MUTATED                           8    99
  PTEN WILD-TYPE                        30   623
D14V8, multiclass
                                  clus
vv                                 PTEN MUTATED PTEN WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             12
  BLACK OR AFRICAN AMERICAN                   8             30
  WHITE                                      99            623
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V9, binary
                cls
clus               0   1
  PTEN MUTATED     3  88
  PTEN WILD-TYPE  32 578
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3   88
  PTEN WILD-TYPE   32  578
                        clus
vv                       PTEN MUTATED PTEN WILD-TYPE
  HISPANIC OR LATINO                3             32
  NOT HISPANIC OR LATINO           88            578
[1] 2 2
[1] FALSE

Clustering(15) Variable = ARID1A MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2                0   1
  ARID1A MUTATED    18   4
  ARID1A WILD-TYPE 435 330
  ARID1A MUTATED ARID1A WILD-TYPE 
              22              765 
  ARID1A MUTATED ARID1A WILD-TYPE 
               4              330 
$`ARID1A MUTATED`
TCGA-06-1806 TCGA-41-3915 TCGA-DB-5275 TCGA-DB-A4XA TCGA-DU-6392 TCGA-DU-6410 
       15.32        11.84        47.93        18.84       211.17         7.96 
TCGA-DU-7009 TCGA-DU-7304 TCGA-FG-5962 TCGA-FG-7637 TCGA-FG-A60L TCGA-FG-A710 
      154.36        23.31        47.77        40.08        21.53        36.66 
TCGA-HT-7468 TCGA-HT-7611 TCGA-HT-7688 TCGA-HT-8564 TCGA-HW-7490 TCGA-P5-A77W 
        6.67        57.60        31.69        15.72        45.60        19.20 
TCGA-QH-A65X TCGA-S9-A6U2 TCGA-TM-A84M TCGA-TM-A84S 
       15.85        29.85        24.79        14.93 

$`ARID1A WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 
       49.12         6.61       122.73        81.96        75.25        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       16.83        94.52       114.08         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      156.23        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       44.02        62.01        25.91        60.30        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 
      145.05        32.35        39.48         0.23         0.20        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       18.44        15.35        17.88        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       23.70        14.76        17.82        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       28.54        10.78        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
       27.52         0.10        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        45.99        56.09         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       28.27         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       13.45        41.49        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       25.81        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84O TCGA-TM-A84Q 
       30.44        28.08        24.16        40.83        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       18.61        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  ARID1A MUTATED ARID1A WILD-TYPE 
            6.67             0.03 
  ARID1A MUTATED ARID1A WILD-TYPE 
          211.17           182.33 
  ARID1A MUTATED ARID1A WILD-TYPE 
           24.05            16.64 
[1] "6.7 - 211.2 (24.0)" "0.0 - 182.3 (16.6)"
[1] "hr=" "3.9"
D15V2, continuous
D15V3, binary
                  cls
clus                 0   1
  ARID1A MUTATED     2  20
  ARID1A WILD-TYPE 276 492
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      2   20
  ARID1A WILD-TYPE  276  492
                        clus
vv                       ARID1A MUTATED ARID1A WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM             20              492
[1] 2 2
[1] FALSE
D15V4, binary
                  cls
clus                 0   1
  ARID1A MUTATED     7  15
  ARID1A WILD-TYPE 322 446
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      7   15
  ARID1A WILD-TYPE  322  446
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE              7              322
  MALE               15              446
[1] 2 2
[1] FALSE
D15V5, binary
                  cls
clus                 0   1
  ARID1A MUTATED    10  12
  ARID1A WILD-TYPE 222 496
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     10   12
  ARID1A WILD-TYPE  222  496
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO              10              222
  YES             12              496
[1] 2 2
[1] FALSE
D15V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ARID1A MUTATED             4                             1                7
  ARID1A WILD-TYPE         188                             8              123
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ARID1A MUTATED                   9                   0
  ARID1A WILD-TYPE               181                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  ARID1A MUTATED                                 1
  ARID1A WILD-TYPE                             264
D15V7, multiclass
                                 clus
vv                                ARID1A MUTATED ARID1A WILD-TYPE
  ASTROCYTOMA                                  4              188
  GLIOBLASTOMA MULTIFORME (GBM)                1                8
  OLIGOASTROCYTOMA                             7              123
  OLIGODENDROGLIOMA                            9              181
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ARID1A MUTATED                                  0     0
  ARID1A WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ARID1A MUTATED                           0    22
  ARID1A WILD-TYPE                        38   700
D15V8, multiclass
                                  clus
vv                                 ARID1A MUTATED ARID1A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        22              700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V9, binary
                  cls
clus                 0   1
  ARID1A MUTATED     1  21
  ARID1A WILD-TYPE  34 645
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      1   21
  ARID1A WILD-TYPE   34  645
                        clus
vv                       ARID1A MUTATED ARID1A WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO             21              645
[1] 2 2
[1] FALSE

Clustering(16) Variable = SLC26A3 MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  SLC26A3 MUTATED     5   5
  SLC26A3 WILD-TYPE 448 329
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
               10               777 
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
                5               329 
$`SLC26A3 MUTATED`
TCGA-02-0003 TCGA-06-2563 TCGA-12-0618 TCGA-15-0742 TCGA-28-5216 TCGA-32-4211 
        4.73        30.64        12.99        13.78        13.64        12.59 
TCGA-DU-6392 TCGA-DU-6402 TCGA-DU-A7TJ TCGA-P5-A5EV 
      211.17         7.04         0.56         0.23 

$`SLC26A3 WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        2.83        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       15.35        14.73        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-1444 TCGA-16-0846 
        7.17        17.49         0.39         3.42        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77        31.27        23.44        11.01         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
        3.72        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
        7.50        44.42        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
             0.23              0.03 
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
           211.17            182.33 
  SLC26A3 MUTATED SLC26A3 WILD-TYPE 
            12.79             16.93 
[1] "0.2 - 211.2 (12.8)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
                   cls
clus                  0   1
  SLC26A3 MUTATED     6   4
  SLC26A3 WILD-TYPE 272 508
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A3 MUTATED      6    4
  SLC26A3 WILD-TYPE  272  508
                        clus
vv                       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  BRAIN                                6               272
  CENTRAL NERVOUS SYSTEM               4               508
[1] 2 2
[1] FALSE
D16V4, binary
                   cls
clus                  0   1
  SLC26A3 MUTATED     2   8
  SLC26A3 WILD-TYPE 327 453
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A3 MUTATED      2    8
  SLC26A3 WILD-TYPE  327  453
        clus
vv       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  FEMALE               2               327
  MALE                 8               453
[1] 2 2
[1] FALSE
D16V5, binary
                   cls
clus                  0   1
  SLC26A3 MUTATED     0   8
  SLC26A3 WILD-TYPE 232 500
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A3 MUTATED      0    8
  SLC26A3 WILD-TYPE  232  500
     clus
vv    SLC26A3 MUTATED SLC26A3 WILD-TYPE
  NO                0               232
  YES               8               500
[1] 2 2
[1] FALSE
D16V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SLC26A3 MUTATED             4                             0                0
  SLC26A3 WILD-TYPE         188                             9              130
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SLC26A3 MUTATED                   0                   0
  SLC26A3 WILD-TYPE               190                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  SLC26A3 MUTATED                                 6
  SLC26A3 WILD-TYPE                             259
D16V7, multiclass
                                 clus
vv                                SLC26A3 MUTATED SLC26A3 WILD-TYPE
  ASTROCYTOMA                                   4               188
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              0               130
  OLIGODENDROGLIOMA                             0               190
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               6               259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SLC26A3 MUTATED                                  0     0
  SLC26A3 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  SLC26A3 MUTATED                           1     9
  SLC26A3 WILD-TYPE                        37   713
D16V8, multiclass
                                  clus
vv                                 SLC26A3 MUTATED SLC26A3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      1                37
  WHITE                                          9               713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V9, binary
                   cls
clus                  0   1
  SLC26A3 MUTATED     0   9
  SLC26A3 WILD-TYPE  35 657
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A3 MUTATED      0    9
  SLC26A3 WILD-TYPE   35  657
                        clus
vv                       SLC26A3 MUTATED SLC26A3 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               9               657
[1] 2 2
[1] FALSE

Clustering(17) Variable = NIPBL MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2               0   1
  NIPBL MUTATED    16   4
  NIPBL WILD-TYPE 437 330
  NIPBL MUTATED NIPBL WILD-TYPE 
             20             767 
  NIPBL MUTATED NIPBL WILD-TYPE 
              4             330 
$`NIPBL MUTATED`
TCGA-06-0122 TCGA-06-5858 TCGA-DB-A4XG TCGA-DH-5141 TCGA-DH-A7UT TCGA-DU-6392 
        6.15         6.15        72.95        31.82        17.46       211.17 
TCGA-DU-7009 TCGA-F6-A8O3 TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-A619 TCGA-P5-A72Z 
      154.36         0.23        27.52         6.67        21.40        11.64 
TCGA-P5-A730 TCGA-R8-A6ML TCGA-RY-A83Y TCGA-S9-A6UB TCGA-S9-A7IY TCGA-TM-A7C3 
       10.95        94.03         5.46       123.65        23.51        54.77 
TCGA-TQ-A7RG TCGA-W9-A837 
       19.69        51.06 

$`NIPBL WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       15.45        20.32         2.70        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 
        8.55         5.10         2.73         3.75         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       33.57        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        17.19        54.25        23.21        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      156.23        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O4 TCGA-FG-5962 
       73.48       145.05        32.35        39.48         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-HT-7467 TCGA-HT-7469 
       48.69        20.45        18.64         5.72         0.10        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.14        16.83         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A731 
        0.76         1.28         0.23        10.42        13.25         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       32.65        59.38        30.87         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WD 
       32.61        35.15        98.24        95.93         5.85        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       26.93        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       21.37        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01        23.21         8.05        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  NIPBL MUTATED NIPBL WILD-TYPE 
           0.23            0.03 
  NIPBL MUTATED NIPBL WILD-TYPE 
         211.17          182.33 
  NIPBL MUTATED NIPBL WILD-TYPE 
         22.455          16.700 
[1] "0.2 - 211.2 (22.5)" "0.0 - 182.3 (16.7)"
[1] "hr=" "3.8"
D17V2, continuous
D17V3, binary
                 cls
clus                0   1
  NIPBL MUTATED     2  18
  NIPBL WILD-TYPE 276 494
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NIPBL MUTATED      2   18
  NIPBL WILD-TYPE  276  494
                        clus
vv                       NIPBL MUTATED NIPBL WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM            18             494
[1] 2 2
[1] FALSE
D17V4, binary
                 cls
clus                0   1
  NIPBL MUTATED     7  13
  NIPBL WILD-TYPE 322 448
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NIPBL MUTATED      7   13
  NIPBL WILD-TYPE  322  448
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  FEMALE             7             322
  MALE              13             448
[1] 2 2
[1] FALSE
D17V5, binary
                 cls
clus                0   1
  NIPBL MUTATED     9   9
  NIPBL WILD-TYPE 223 499
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NIPBL MUTATED      9    9
  NIPBL WILD-TYPE  223  499
     clus
vv    NIPBL MUTATED NIPBL WILD-TYPE
  NO              9             223
  YES             9             499
[1] 2 2
[1] FALSE
D17V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NIPBL MUTATED             3                             0                4
  NIPBL WILD-TYPE         189                             9              126
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NIPBL MUTATED                  11                   0
  NIPBL WILD-TYPE               179                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  NIPBL MUTATED                                 2
  NIPBL WILD-TYPE                             263
D17V7, multiclass
                                 clus
vv                                NIPBL MUTATED NIPBL WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            4             126
  OLIGODENDROGLIOMA                          11             179
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NIPBL MUTATED                                  0     2
  NIPBL WILD-TYPE                                1    11
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  NIPBL MUTATED                           0    18
  NIPBL WILD-TYPE                        38   704
D17V8, multiclass
                                  clus
vv                                 NIPBL MUTATED NIPBL WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        2              11
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                       18             704
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V9, binary
                 cls
clus                0   1
  NIPBL MUTATED     3  17
  NIPBL WILD-TYPE  32 649
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NIPBL MUTATED      3   17
  NIPBL WILD-TYPE   32  649
                        clus
vv                       NIPBL MUTATED NIPBL WILD-TYPE
  HISPANIC OR LATINO                 3              32
  NOT HISPANIC OR LATINO            17             649
[1] 2 2
[1] FALSE

Clustering(18) Variable = ZMIZ1 MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2               0   1
  ZMIZ1 MUTATED     9   3
  ZMIZ1 WILD-TYPE 444 331
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             12             775 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              3             331 
$`ZMIZ1 MUTATED`
TCGA-19-1790 TCGA-27-2521 TCGA-41-4097 TCGA-DU-6392 TCGA-DU-7009 TCGA-HT-8564 
        5.06        10.39         0.20       211.17       154.36        15.72 
TCGA-QH-A6CU TCGA-QH-A6X8 TCGA-R8-A6MO TCGA-RY-A843 TCGA-TQ-A7RH TCGA-TQ-A7RN 
       14.83        16.73        32.65         2.07        15.98        33.73 

$`ZMIZ1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
       25.38         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        24.76        18.08        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44        11.84        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       11.47        62.96       156.23        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DS 
        0.23        29.59        34.19        13.74        28.27         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       15.85        14.04        19.33        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 
        2.20         9.17        10.29        14.53        16.34         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A845 
       59.38        30.87         5.46         9.90        28.08        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       14.93        23.80        21.37        19.69         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
           0.20            0.03 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
         211.17          182.33 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
          15.85           16.93 
[1] "0.2 - 211.2 (15.9)" "0.0 - 182.3 (16.9)"
[1] "hr=" "2.7"
D18V2, continuous
D18V3, binary
                 cls
clus                0   1
  ZMIZ1 MUTATED     3   9
  ZMIZ1 WILD-TYPE 275 503
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMIZ1 MUTATED      3    9
  ZMIZ1 WILD-TYPE  275  503
                        clus
vv                       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             9             503
[1] 2 2
[1] FALSE
D18V4, binary
                 cls
clus                0   1
  ZMIZ1 MUTATED     6   6
  ZMIZ1 WILD-TYPE 323 455
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMIZ1 MUTATED      6    6
  ZMIZ1 WILD-TYPE  323  455
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  FEMALE             6             323
  MALE               6             455
[1] 2 2
[1] FALSE
D18V5, binary
                 cls
clus                0   1
  ZMIZ1 MUTATED     4   8
  ZMIZ1 WILD-TYPE 228 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMIZ1 MUTATED      4    8
  ZMIZ1 WILD-TYPE  228  500
     clus
vv    ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  NO              4             228
  YES             8             500
[1] 2 2
[1] FALSE
D18V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZMIZ1 MUTATED             3                             0                1
  ZMIZ1 WILD-TYPE         189                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZMIZ1 MUTATED                   5                   0
  ZMIZ1 WILD-TYPE               185                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  ZMIZ1 MUTATED                                 3
  ZMIZ1 WILD-TYPE                             262
D18V7, multiclass
                                 clus
vv                                ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           5             185
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZMIZ1 MUTATED                                  0     1
  ZMIZ1 WILD-TYPE                                1    12
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ZMIZ1 MUTATED                           1    10
  ZMIZ1 WILD-TYPE                        37   712
D18V8, multiclass
                                  clus
vv                                 ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              12
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                       10             712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V9, binary
                 cls
clus                0   1
  ZMIZ1 MUTATED     3   9
  ZMIZ1 WILD-TYPE  32 657
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMIZ1 MUTATED      3    9
  ZMIZ1 WILD-TYPE   32  657
                        clus
vv                       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  HISPANIC OR LATINO                 3              32
  NOT HISPANIC OR LATINO             9             657
[1] 2 2
[1] FALSE

Clustering(19) Variable = NUDT11 MUTATION ANALYSIS
D19V1, survival
                  sevent
clus2                0   1
  NUDT11 MUTATED     9   2
  NUDT11 WILD-TYPE 444 332
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              776 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               2              332 
$`NUDT11 MUTATED`
TCGA-DU-6392 TCGA-DU-6400 TCGA-FG-A4MX TCGA-HT-7470 TCGA-HT-7477 TCGA-HT-7684 
      211.17         1.22        18.71        40.11        24.26         6.05 
TCGA-HW-8322 TCGA-QH-A65Z TCGA-QH-A6CW TCGA-S9-A7IY TCGA-S9-A7J0 
        6.18        14.04        13.61        23.51        20.02 

$`NUDT11 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.75        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.38        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       11.54         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
        6.54         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
       44.68        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       19.33        14.83        14.53        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
        7.92        26.93        19.99         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  NUDT11 MUTATED NUDT11 WILD-TYPE 
            1.22             0.03 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
          211.17           182.33 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
          18.710           16.815 
[1] "1.2 - 211.2 (18.7)" "0.0 - 182.3 (16.8)"
[1] "hr=" "3"  
D19V2, continuous
D19V3, binary
                  cls
clus                 0   1
  NUDT11 MUTATED     0  11
  NUDT11 WILD-TYPE 278 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NUDT11 MUTATED      0   11
  NUDT11 WILD-TYPE  278  501
                        clus
vv                       NUDT11 MUTATED NUDT11 WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM             11              501
[1] 2 2
[1] FALSE
D19V4, binary
                  cls
clus                 0   1
  NUDT11 MUTATED     3   8
  NUDT11 WILD-TYPE 326 453
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NUDT11 MUTATED      3    8
  NUDT11 WILD-TYPE  326  453
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  FEMALE              3              326
  MALE                8              453
[1] 2 2
[1] FALSE
D19V5, binary
                  cls
clus                 0   1
  NUDT11 MUTATED     4   7
  NUDT11 WILD-TYPE 228 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NUDT11 MUTATED      4    7
  NUDT11 WILD-TYPE  228  501
     clus
vv    NUDT11 MUTATED NUDT11 WILD-TYPE
  NO               4              228
  YES              7              501
[1] 2 2
[1] FALSE
D19V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NUDT11 MUTATED             3                             0                3
  NUDT11 WILD-TYPE         189                             9              127
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NUDT11 MUTATED                   5                   0
  NUDT11 WILD-TYPE               185                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  NUDT11 MUTATED                                 0
  NUDT11 WILD-TYPE                             265
D19V7, multiclass
                                 clus
vv                                NUDT11 MUTATED NUDT11 WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             3              127
  OLIGODENDROGLIOMA                            5              185
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NUDT11 MUTATED                                  0     0
  NUDT11 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  NUDT11 MUTATED                           0    11
  NUDT11 WILD-TYPE                        38   711
D19V8, multiclass
                                  clus
vv                                 NUDT11 MUTATED NUDT11 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        11              711
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V9, binary
                  cls
clus                 0   1
  NUDT11 MUTATED     0  11
  NUDT11 WILD-TYPE  35 655
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NUDT11 MUTATED      0   11
  NUDT11 WILD-TYPE   35  655
                        clus
vv                       NUDT11 MUTATED NUDT11 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO             11              655
[1] 2 2
[1] FALSE

Clustering(20) Variable = GAGE2A MUTATION ANALYSIS
D20V1, survival
                  sevent
clus2                0   1
  GAGE2A MUTATED     7   1
  GAGE2A WILD-TYPE 446 333
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              779 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1              333 
$`GAGE2A MUTATED`
TCGA-DU-5849 TCGA-DU-A7TJ TCGA-E1-5303 TCGA-FG-A4MY TCGA-HT-7481 TCGA-HT-A616 
       14.56         0.56        67.46        23.70        95.93         1.81 
TCGA-S9-A6TV TCGA-VW-A7QS 
       18.77        23.21 

$`GAGE2A WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5305 
       37.38         7.50        44.42        50.14        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       18.71        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7482 
        6.54        24.26         6.38        40.34        75.19       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A618 
        0.10         5.33         2.70        16.93        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       87.12        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       16.01         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  GAGE2A MUTATED GAGE2A WILD-TYPE 
            0.56             0.03 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
           95.93           211.17 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
           20.99            16.80 
[1] "0.6 - 95.9 (21.0)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "4"  
D20V2, continuous
D20V3, binary
                  cls
clus                 0   1
  GAGE2A MUTATED     0   8
  GAGE2A WILD-TYPE 278 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAGE2A MUTATED      0    8
  GAGE2A WILD-TYPE  278  504
                        clus
vv                       GAGE2A MUTATED GAGE2A WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM              8              504
[1] 2 2
[1] FALSE
D20V4, binary
                  cls
clus                 0   1
  GAGE2A MUTATED     3   5
  GAGE2A WILD-TYPE 326 456
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAGE2A MUTATED      3    5
  GAGE2A WILD-TYPE  326  456
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  FEMALE              3              326
  MALE                5              456
[1] 2 2
[1] FALSE
D20V5, binary
                  cls
clus                 0   1
  GAGE2A MUTATED     3   4
  GAGE2A WILD-TYPE 229 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAGE2A MUTATED      3    4
  GAGE2A WILD-TYPE  229  504
     clus
vv    GAGE2A MUTATED GAGE2A WILD-TYPE
  NO               3              229
  YES              4              504
[1] 2 2
[1] FALSE
D20V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GAGE2A MUTATED             3                             0                2
  GAGE2A WILD-TYPE         189                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GAGE2A MUTATED                   3                   0
  GAGE2A WILD-TYPE               187                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  GAGE2A MUTATED                                 0
  GAGE2A WILD-TYPE                             265
D20V7, multiclass
                                 clus
vv                                GAGE2A MUTATED GAGE2A WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            3              187
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GAGE2A MUTATED                                  0     1
  GAGE2A WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  GAGE2A MUTATED                           1     6
  GAGE2A WILD-TYPE                        37   716
D20V8, multiclass
                                  clus
vv                                 GAGE2A MUTATED GAGE2A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         6              716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V9, binary
                  cls
clus                 0   1
  GAGE2A MUTATED     1   7
  GAGE2A WILD-TYPE  34 659
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAGE2A MUTATED      1    7
  GAGE2A WILD-TYPE   34  659
                        clus
vv                       GAGE2A MUTATED GAGE2A WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              7              659
[1] 2 2
[1] FALSE

Clustering(21) Variable = CREBZF MUTATION ANALYSIS
D21V1, survival
                  sevent
clus2                0   1
  CREBZF MUTATED     7   2
  CREBZF WILD-TYPE 446 332
  CREBZF MUTATED CREBZF WILD-TYPE 
               9              778 
  CREBZF MUTATED CREBZF WILD-TYPE 
               2              332 
$`CREBZF MUTATED`
TCGA-06-0129 TCGA-32-4208 TCGA-DU-7298 TCGA-DU-7302 TCGA-DU-8168 TCGA-DU-A6S3 
       33.67        21.14        18.94        60.30        14.17        21.57 
TCGA-HT-7694 TCGA-P5-A5EX TCGA-TQ-A7RQ 
        6.90         7.99        26.14 

$`CREBZF WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       22.72        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-7300 
       26.30        10.36         7.96        94.32        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       25.91        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       33.96        25.55        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        0.10         2.96        17.52        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40        14.40         0.23         6.71         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       31.20        30.05        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  CREBZF MUTATED CREBZF WILD-TYPE 
            6.90             0.03 
  CREBZF MUTATED CREBZF WILD-TYPE 
           60.30           211.17 
  CREBZF MUTATED CREBZF WILD-TYPE 
          21.140           16.765 
[1] "6.9 - 60.3 (21.1)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2"  
D21V2, continuous
D21V3, binary
                  cls
clus                 0   1
  CREBZF MUTATED     2   7
  CREBZF WILD-TYPE 276 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CREBZF MUTATED      2    7
  CREBZF WILD-TYPE  276  505
                        clus
vv                       CREBZF MUTATED CREBZF WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              7              505
[1] 2 2
[1] FALSE
D21V4, binary
                  cls
clus                 0   1
  CREBZF MUTATED     5   4
  CREBZF WILD-TYPE 324 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CREBZF MUTATED      5    4
  CREBZF WILD-TYPE  324  457
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  FEMALE              5              324
  MALE                4              457
[1] 2 2
[1] FALSE
D21V5, binary
                  cls
clus                 0   1
  CREBZF MUTATED     3   6
  CREBZF WILD-TYPE 229 502
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CREBZF MUTATED      3    6
  CREBZF WILD-TYPE  229  502
     clus
vv    CREBZF MUTATED CREBZF WILD-TYPE
  NO               3              229
  YES              6              502
[1] 2 2
[1] FALSE
D21V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CREBZF MUTATED             1                             0                0
  CREBZF WILD-TYPE         191                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CREBZF MUTATED                   6                   0
  CREBZF WILD-TYPE               184                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  CREBZF MUTATED                                 2
  CREBZF WILD-TYPE                             263
D21V7, multiclass
                                 clus
vv                                CREBZF MUTATED CREBZF WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            6              184
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CREBZF MUTATED                                  0     1
  CREBZF WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  CREBZF MUTATED                           1     7
  CREBZF WILD-TYPE                        37   715
D21V8, multiclass
                                  clus
vv                                 CREBZF MUTATED CREBZF WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         7              715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V9, binary
                  cls
clus                 0   1
  CREBZF MUTATED     1   8
  CREBZF WILD-TYPE  34 658
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CREBZF MUTATED      1    8
  CREBZF WILD-TYPE   34  658
                        clus
vv                       CREBZF MUTATED CREBZF WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              8              658
[1] 2 2
[1] FALSE

Clustering(22) Variable = PLCG1 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2               0   1
  PLCG1 MUTATED     2   9
  PLCG1 WILD-TYPE 451 325
  PLCG1 MUTATED PLCG1 WILD-TYPE 
             11             776 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              9             325 
$`PLCG1 MUTATED`
TCGA-06-0192 TCGA-06-0195 TCGA-06-0648 TCGA-06-0743 TCGA-76-6282 TCGA-CS-4941 
       38.96         7.40         9.80        26.40        17.06         7.69 
TCGA-CS-5395 TCGA-DU-5852 TCGA-DU-5855 TCGA-DU-8161 TCGA-QH-A6CU 
       21.01         6.74         6.81        23.74        14.83 

$`PLCG1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0209 TCGA-06-0213 
       69.90        73.84        44.58        15.42         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 TCGA-06-0650 
       48.69        12.62         5.75         5.75         2.10        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       20.78        26.76        13.61        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        4.54         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        11.38         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 
        1.61        17.72        26.30         4.70        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 
       10.62        64.64        40.18         0.10         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       17.46        13.38         8.45       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CV 
        2.53        12.62        15.85        14.04        19.33        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  PLCG1 MUTATED PLCG1 WILD-TYPE 
           6.74            0.03 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
          38.96          211.17 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
          14.83           16.83 
[1] "6.7 - 39.0 (14.8)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2.7"
D22V2, continuous
D22V3, binary
                 cls
clus                0   1
  PLCG1 MUTATED     5   6
  PLCG1 WILD-TYPE 273 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCG1 MUTATED      5    6
  PLCG1 WILD-TYPE  273  506
                        clus
vv                       PLCG1 MUTATED PLCG1 WILD-TYPE
  BRAIN                              5             273
  CENTRAL NERVOUS SYSTEM             6             506
[1] 2 2
[1] FALSE
D22V4, binary
                 cls
clus                0   1
  PLCG1 MUTATED     4   7
  PLCG1 WILD-TYPE 325 454
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCG1 MUTATED      4    7
  PLCG1 WILD-TYPE  325  454
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  FEMALE             4             325
  MALE               7             454
[1] 2 2
[1] FALSE
D22V5, binary
                 cls
clus                0   1
  PLCG1 MUTATED     1  10
  PLCG1 WILD-TYPE 231 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCG1 MUTATED      1   10
  PLCG1 WILD-TYPE  231  498
     clus
vv    PLCG1 MUTATED PLCG1 WILD-TYPE
  NO              1             231
  YES            10             498
[1] 2 2
[1] FALSE
D22V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PLCG1 MUTATED             1                             0                3
  PLCG1 WILD-TYPE         191                             9              127
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PLCG1 MUTATED                   2                   0
  PLCG1 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  PLCG1 MUTATED                                 5
  PLCG1 WILD-TYPE                             260
D22V7, multiclass
                                 clus
vv                                PLCG1 MUTATED PLCG1 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            3             127
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             5             260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PLCG1 MUTATED                                  0     0
  PLCG1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  PLCG1 MUTATED                           1    10
  PLCG1 WILD-TYPE                        37   712
D22V8, multiclass
                                  clus
vv                                 PLCG1 MUTATED PLCG1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                       10             712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V9, binary
                 cls
clus                0   1
  PLCG1 MUTATED     0  10
  PLCG1 WILD-TYPE  35 656
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCG1 MUTATED      0   10
  PLCG1 WILD-TYPE   35  656
                        clus
vv                       PLCG1 MUTATED PLCG1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            10             656
[1] 2 2
[1] FALSE

Clustering(23) Variable = STAG2 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2               0   1
  STAG2 MUTATED     4  12
  STAG2 WILD-TYPE 449 322
  STAG2 MUTATED STAG2 WILD-TYPE 
             16             771 
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             322 
$`STAG2 MUTATED`
TCGA-06-0749 TCGA-06-2561 TCGA-06-6388 TCGA-12-0692 TCGA-12-0821 TCGA-14-0789 
        2.70        17.65         5.23         3.65        10.62        11.24 
TCGA-14-2554 TCGA-19-5955 TCGA-32-5222 TCGA-41-4097 TCGA-74-6577 TCGA-81-5910 
       17.49         1.78        19.23         0.20         4.34         1.61 
TCGA-DU-6392 TCGA-HT-7610 TCGA-HT-8011 TCGA-TM-A7C3 
      211.17        56.09        16.24        54.77 

$`STAG2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08        12.49         4.93        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 
        5.10         2.73         3.75         6.15         4.57         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-1597 TCGA-12-3649 
       14.73        12.99        34.92        26.66        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 
       11.97         0.95        23.05         2.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-3476 TCGA-14-4157 
       40.96        17.85         7.63         7.17         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       18.90         4.73        12.10        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44        11.84        15.12        12.46         3.45        20.91 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
        3.16        22.06        45.99        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
       31.43         1.64         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       18.71        20.48        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  STAG2 MUTATED STAG2 WILD-TYPE 
           0.20            0.03 
  STAG2 MUTATED STAG2 WILD-TYPE 
         211.17          182.33 
  STAG2 MUTATED STAG2 WILD-TYPE 
          10.93           16.93 
[1] "0.2 - 211.2 (10.9)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.9"
D23V2, continuous
D23V3, binary
                 cls
clus                0   1
  STAG2 MUTATED    12   4
  STAG2 WILD-TYPE 266 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED     12    4
  STAG2 WILD-TYPE  266  508
                        clus
vv                       STAG2 MUTATED STAG2 WILD-TYPE
  BRAIN                             12             266
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D23V4, binary
                 cls
clus                0   1
  STAG2 MUTATED     8   8
  STAG2 WILD-TYPE 321 453
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      8    8
  STAG2 WILD-TYPE  321  453
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  FEMALE             8             321
  MALE               8             453
[1] 2 2
[1] FALSE
D23V5, binary
                 cls
clus                0   1
  STAG2 MUTATED     6  10
  STAG2 WILD-TYPE 226 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      6   10
  STAG2 WILD-TYPE  226  498
     clus
vv    STAG2 MUTATED STAG2 WILD-TYPE
  NO              6             226
  YES            10             498
[1] 2 2
[1] FALSE
D23V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  STAG2 MUTATED             3                             0                1
  STAG2 WILD-TYPE         189                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  STAG2 MUTATED                   0                   0
  STAG2 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  STAG2 MUTATED                                12
  STAG2 WILD-TYPE                             253
D23V7, multiclass
                                 clus
vv                                STAG2 MUTATED STAG2 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM            12             253
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  STAG2 MUTATED                                  0     0
  STAG2 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  STAG2 MUTATED                           1    14
  STAG2 WILD-TYPE                        37   708
D23V8, multiclass
                                  clus
vv                                 STAG2 MUTATED STAG2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                       14             708
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V9, binary
                 cls
clus                0   1
  STAG2 MUTATED     0  12
  STAG2 WILD-TYPE  35 654
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      0   12
  STAG2 WILD-TYPE   35  654
                        clus
vv                       STAG2 MUTATED STAG2 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            12             654
[1] 2 2
[1] FALSE

Clustering(24) Variable = SEMG1 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2               0   1
  SEMG1 MUTATED     3   8
  SEMG1 WILD-TYPE 450 326
  SEMG1 MUTATED SEMG1 WILD-TYPE 
             11             776 
  SEMG1 MUTATED SEMG1 WILD-TYPE 
              8             326 
$`SEMG1 MUTATED`
TCGA-06-0158 TCGA-06-0185 TCGA-06-0195 TCGA-06-0876 TCGA-19-2624 TCGA-32-1979 
       10.82        73.84         7.40        46.19         0.16        19.50 
TCGA-32-2632 TCGA-41-2575 TCGA-DU-6392 TCGA-E1-A7YD TCGA-TM-A7C3 
        8.84         9.53       211.17        14.30        54.77 

$`SEMG1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       13.94        10.45         3.19        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       44.58        15.42        38.96         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       20.78        26.76        13.61        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        4.54         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        7.53         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1980 TCGA-32-1982 
       10.49         5.42        15.39         0.10         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YE 
       57.93       134.27        78.21        95.57       130.78        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       20.48        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  SEMG1 MUTATED SEMG1 WILD-TYPE 
           0.16            0.03 
  SEMG1 MUTATED SEMG1 WILD-TYPE 
         211.17          182.33 
  SEMG1 MUTATED SEMG1 WILD-TYPE 
          14.30           16.83 
[1] "0.2 - 211.2 (14.3)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
                 cls
clus                0   1
  SEMG1 MUTATED     8   3
  SEMG1 WILD-TYPE 270 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SEMG1 MUTATED      8    3
  SEMG1 WILD-TYPE  270  509
                        clus
vv                       SEMG1 MUTATED SEMG1 WILD-TYPE
  BRAIN                              8             270
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D24V4, binary
                 cls
clus                0   1
  SEMG1 MUTATED     4   7
  SEMG1 WILD-TYPE 325 454
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SEMG1 MUTATED      4    7
  SEMG1 WILD-TYPE  325  454
        clus
vv       SEMG1 MUTATED SEMG1 WILD-TYPE
  FEMALE             4             325
  MALE               7             454
[1] 2 2
[1] FALSE
D24V5, binary
                 cls
clus                0   1
  SEMG1 MUTATED     2   7
  SEMG1 WILD-TYPE 230 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SEMG1 MUTATED      2    7
  SEMG1 WILD-TYPE  230  501
     clus
vv    SEMG1 MUTATED SEMG1 WILD-TYPE
  NO              2             230
  YES             7             501
[1] 2 2
[1] FALSE
D24V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SEMG1 MUTATED             3                             0                0
  SEMG1 WILD-TYPE         189                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SEMG1 MUTATED                   0                   0
  SEMG1 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  SEMG1 MUTATED                                 8
  SEMG1 WILD-TYPE                             257
D24V7, multiclass
                                 clus
vv                                SEMG1 MUTATED SEMG1 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             8             257
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SEMG1 MUTATED                                  0     0
  SEMG1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  SEMG1 MUTATED                           1    10
  SEMG1 WILD-TYPE                        37   712
D24V8, multiclass
                                  clus
vv                                 SEMG1 MUTATED SEMG1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                       10             712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V9, binary
                 cls
clus                0   1
  SEMG1 MUTATED     0  11
  SEMG1 WILD-TYPE  35 655
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SEMG1 MUTATED      0   11
  SEMG1 WILD-TYPE   35  655
                        clus
vv                       SEMG1 MUTATED SEMG1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            11             655
[1] 2 2
[1] FALSE

Clustering(25) Variable = ZNF709 MUTATION ANALYSIS
D25V1, survival
                  sevent
clus2                0   1
  ZNF709 MUTATED     3   3
  ZNF709 WILD-TYPE 450 331
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               6              781 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               3              331 
$`ZNF709 MUTATED`
TCGA-06-6697 TCGA-14-0789 TCGA-HT-7470 TCGA-HT-7608 TCGA-HT-7620 TCGA-IK-7675 
       12.85        11.24        40.11        22.06        14.27        19.00 

$`ZNF709 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.32         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       23.05         2.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
        6.67        11.54         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 
       23.18       122.47         4.57        17.29         3.16        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       56.09        57.60         0.23         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  ZNF709 MUTATED ZNF709 WILD-TYPE 
           11.24             0.03 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
           40.11           211.17 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
          16.635           16.830 
[1] "11.2 - 40.1 (16.6)" "0.0 - 211.2 (16.8)"
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
                  cls
clus                 0   1
  ZNF709 MUTATED     2   4
  ZNF709 WILD-TYPE 276 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF709 MUTATED      2    4
  ZNF709 WILD-TYPE  276  508
                        clus
vv                       ZNF709 MUTATED ZNF709 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D25V4, binary
                  cls
clus                 0   1
  ZNF709 MUTATED     0   6
  ZNF709 WILD-TYPE 329 455
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF709 MUTATED      0    6
  ZNF709 WILD-TYPE  329  455
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  FEMALE              0              329
  MALE                6              455
[1] 2 2
[1] FALSE
D25V5, binary
                  cls
clus                 0   1
  ZNF709 MUTATED     1   5
  ZNF709 WILD-TYPE 231 503
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF709 MUTATED      1    5
  ZNF709 WILD-TYPE  231  503
     clus
vv    ZNF709 MUTATED ZNF709 WILD-TYPE
  NO               1              231
  YES              5              503
[1] 2 2
[1] FALSE
D25V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZNF709 MUTATED             0                             0                1
  ZNF709 WILD-TYPE         192                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZNF709 MUTATED                   3                   0
  ZNF709 WILD-TYPE               187                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  ZNF709 MUTATED                                 2
  ZNF709 WILD-TYPE                             263
D25V7, multiclass
                                 clus
vv                                ZNF709 MUTATED ZNF709 WILD-TYPE
  ASTROCYTOMA                                  0              192
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            3              187
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZNF709 MUTATED                                  0     0
  ZNF709 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZNF709 MUTATED                           1     5
  ZNF709 WILD-TYPE                        37   717
D25V8, multiclass
                                  clus
vv                                 ZNF709 MUTATED ZNF709 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         5              717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V9, binary
                  cls
clus                 0   1
  ZNF709 MUTATED     1   4
  ZNF709 WILD-TYPE  34 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF709 MUTATED      1    4
  ZNF709 WILD-TYPE   34  662
                        clus
vv                       ZNF709 MUTATED ZNF709 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(26) Variable = MUC17 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2               0   1
  MUC17 MUTATED    22  25
  MUC17 WILD-TYPE 431 309
  MUC17 MUTATED MUC17 WILD-TYPE 
             47             740 
  MUC17 MUTATED MUC17 WILD-TYPE 
             25             309 
$`MUC17 MUTATED`
TCGA-02-0003 TCGA-06-0124 TCGA-06-0168 TCGA-06-0645 TCGA-06-0650 TCGA-06-0939 
        4.73        20.38        19.66         5.75        23.57        26.76 
TCGA-06-2557 TCGA-06-5418 TCGA-12-0821 TCGA-14-1823 TCGA-16-0846 TCGA-19-5953 
        1.08         2.73        10.62        17.85         3.91         4.73 
TCGA-19-5954 TCGA-27-2523 TCGA-28-5204 TCGA-28-5216 TCGA-28-5218 TCGA-32-2491 
       12.10        16.08        14.93        13.64         5.16        12.23 
TCGA-32-4213 TCGA-76-6192 TCGA-76-6286 TCGA-DB-A64L TCGA-DH-A7UR TCGA-DU-6392 
       19.86         3.29        20.98        24.20        54.25       211.17 
TCGA-DU-6396 TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-8166 TCGA-DU-A5TW TCGA-E1-A7YQ 
       75.16        62.96         6.54        16.96        24.99        51.88 
TCGA-HT-7605 TCGA-HT-7687 TCGA-HT-7854 TCGA-HT-7875 TCGA-HT-7902 TCGA-HT-8106 
        4.57         0.10        39.48         0.33        31.43         0.10 
TCGA-HT-A5R7 TCGA-HT-A74H TCGA-QH-A870 TCGA-S9-A6TS TCGA-S9-A6WD TCGA-S9-A6WL 
       20.22         2.43        12.99        62.17        75.25        31.10 
TCGA-S9-A7R8 TCGA-TM-A84J TCGA-TQ-A7RJ TCGA-TQ-A7RR TCGA-WY-A859 
       31.59        24.16        40.41        25.87        39.88 

$`MUC17 WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        2.83        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 
       20.32         2.70         6.15         6.94        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       12.95        25.35        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.20         2.33        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0169 
        3.19        10.82        10.65         5.85        11.41         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        4.47         3.22        88.14        69.90        73.84        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 
       12.62         5.75         9.80         2.10        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        15.32        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         5.10         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1825 TCGA-14-1829 
        0.79         1.38        58.78        40.96         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0861 
       17.49         0.39         3.42        13.78        50.53         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       17.19         8.02        18.90         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 
       14.04        11.51        24.76        18.08        10.39         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 
        0.66         4.77         7.30         5.26        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5219 
        2.53        11.77        31.27        23.44        11.01        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        16.93        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6193 TCGA-76-6280 
       47.93         2.53        36.85        16.70         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06         8.35         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        17.19        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       22.42        49.02        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 TCGA-DU-7009 
      114.08         7.96         2.40        11.47       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
       14.99       105.21         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8167 
       23.74        14.60        20.68        21.40        19.13        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       75.02        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 
        4.01         5.03        29.85        23.18       122.47        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
       17.52         6.90        14.53        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7879 
       50.63         0.49        23.61        37.15         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 
        5.33        35.47         3.72        11.28         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        6.25         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
       26.04         0.13         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
        6.38        17.52        17.65        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
       16.50         5.03        11.08        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       19.59        30.67        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WE 
       35.15        98.24        95.93         5.85       123.65       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       85.55        38.56        84.99        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       30.05        98.63        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        30.44        28.08        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
       15.98         2.04        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       30.05        26.14        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       51.06        13.32        43.96        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  MUC17 MUTATED MUC17 WILD-TYPE 
           0.10            0.03 
  MUC17 MUTATED MUC17 WILD-TYPE 
         211.17          182.33 
  MUC17 MUTATED MUC17 WILD-TYPE 
         19.660          16.715 
[1] "0.1 - 211.2 (19.7)" "0.0 - 182.3 (16.7)"
[1] "hr=" "1.2"
D26V2, continuous
D26V3, binary
                 cls
clus                0   1
  MUC17 MUTATED    21  27
  MUC17 WILD-TYPE 257 485
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC17 MUTATED     21   27
  MUC17 WILD-TYPE  257  485
                        clus
vv                       MUC17 MUTATED MUC17 WILD-TYPE
  BRAIN                             21             257
  CENTRAL NERVOUS SYSTEM            27             485
[1] 2 2
[1] FALSE
D26V4, binary
                 cls
clus                0   1
  MUC17 MUTATED    23  25
  MUC17 WILD-TYPE 306 436
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC17 MUTATED     23   25
  MUC17 WILD-TYPE  306  436
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  FEMALE            23             306
  MALE              25             436
[1] 2 2
[1] FALSE
D26V5, binary
                 cls
clus                0   1
  MUC17 MUTATED    13  32
  MUC17 WILD-TYPE 219 476
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC17 MUTATED     13   32
  MUC17 WILD-TYPE  219  476
     clus
vv    MUC17 MUTATED MUC17 WILD-TYPE
  NO             13             219
  YES            32             476
[1] 2 2
[1] FALSE
D26V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MUC17 MUTATED            13                             0                6
  MUC17 WILD-TYPE         179                             9              124
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MUC17 MUTATED                   8                   0
  MUC17 WILD-TYPE               182                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  MUC17 MUTATED                                21
  MUC17 WILD-TYPE                             244
D26V7, multiclass
                                 clus
vv                                MUC17 MUTATED MUC17 WILD-TYPE
  ASTROCYTOMA                                13             179
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            6             124
  OLIGODENDROGLIOMA                           8             182
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM            21             244
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MUC17 MUTATED                                  0     0
  MUC17 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MUC17 MUTATED                           4    44
  MUC17 WILD-TYPE                        34   678
D26V8, multiclass
                                  clus
vv                                 MUC17 MUTATED MUC17 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    4              34
  WHITE                                       44             678
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V9, binary
                 cls
clus                0   1
  MUC17 MUTATED     2  41
  MUC17 WILD-TYPE  33 625
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC17 MUTATED      2   41
  MUC17 WILD-TYPE   33  625
                        clus
vv                       MUC17 MUTATED MUC17 WILD-TYPE
  HISPANIC OR LATINO                 2              33
  NOT HISPANIC OR LATINO            41             625
[1] 2 2
[1] FALSE

Clustering(27) Variable = PDGFRA MUTATION ANALYSIS
D27V1, survival
                  sevent
clus2                0   1
  PDGFRA MUTATED     5  15
  PDGFRA WILD-TYPE 448 319
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              20              767 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              15              319 
$`PDGFRA MUTATED`
TCGA-02-0047 TCGA-06-0174 TCGA-06-0213 TCGA-06-0214 TCGA-06-0241 TCGA-06-2559 
       14.73         3.22         0.53        15.02        48.69         4.93 
TCGA-14-0740 TCGA-19-1390 TCGA-19-2631 TCGA-26-5134 TCGA-27-1831 TCGA-CS-4941 
       11.97        25.38         7.00         5.49        16.60         7.69 
TCGA-CS-6665 TCGA-DU-6392 TCGA-E1-A7YI TCGA-FG-A6J1 TCGA-HT-7469 TCGA-HT-7478 
       12.43       211.17         3.65        16.44        11.54         6.38 
TCGA-HT-7882 TCGA-S9-A7IS 
        3.72         7.92 

$`PDGFRA WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
       19.66         3.29         4.47        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0216 
       44.58        15.42        38.96         7.40         7.63        24.16 
TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0644 TCGA-06-0645 
        0.72        13.64        13.32        20.42        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        5.75         9.80         2.10        23.57        14.20        26.40 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       46.88         7.86         2.70         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        40.41        16.57        20.78 
TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 
       26.76        13.61        15.32         1.08        12.49        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 
       34.92        14.53        14.93         3.22         2.04         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1790 
       13.78        50.53         3.91         4.31        29.03         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
       31.33         9.40        14.86         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        7.92         2.33         5.06         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 
        1.61        17.72        26.30         4.70        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        6.38        17.69        23.84        17.95        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       14.30        29.13        93.21        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7470 
       18.64         5.72        27.52         0.10         6.67        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
       24.26        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  PDGFRA MUTATED PDGFRA WILD-TYPE 
            0.53             0.03 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
          211.17           182.33 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
            9.73            17.19 
[1] "0.5 - 211.2 (9.7)"  "0.0 - 182.3 (17.2)"
[1] "hr=" "2.3"
D27V2, continuous
D27V3, binary
                  cls
clus                 0   1
  PDGFRA MUTATED    11  10
  PDGFRA WILD-TYPE 267 502
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDGFRA MUTATED     11   10
  PDGFRA WILD-TYPE  267  502
                        clus
vv                       PDGFRA MUTATED PDGFRA WILD-TYPE
  BRAIN                              11              267
  CENTRAL NERVOUS SYSTEM             10              502
[1] 2 2
[1] FALSE
D27V4, binary
                  cls
clus                 0   1
  PDGFRA MUTATED    10  11
  PDGFRA WILD-TYPE 319 450
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDGFRA MUTATED     10   11
  PDGFRA WILD-TYPE  319  450
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  FEMALE             10              319
  MALE               11              450
[1] 2 2
[1] FALSE
D27V5, binary
                  cls
clus                 0   1
  PDGFRA MUTATED     6  15
  PDGFRA WILD-TYPE 226 493
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDGFRA MUTATED      6   15
  PDGFRA WILD-TYPE  226  493
     clus
vv    PDGFRA MUTATED PDGFRA WILD-TYPE
  NO               6              226
  YES             15              493
[1] 2 2
[1] FALSE
D27V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PDGFRA MUTATED             6                             0                0
  PDGFRA WILD-TYPE         186                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PDGFRA MUTATED                   4                   0
  PDGFRA WILD-TYPE               186                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PDGFRA MUTATED                                11
  PDGFRA WILD-TYPE                             254
D27V7, multiclass
                                 clus
vv                                PDGFRA MUTATED PDGFRA WILD-TYPE
  ASTROCYTOMA                                  6              186
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            4              186
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM             11              254
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PDGFRA MUTATED                                  0     0
  PDGFRA WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PDGFRA MUTATED                           0    21
  PDGFRA WILD-TYPE                        38   701
D27V8, multiclass
                                  clus
vv                                 PDGFRA MUTATED PDGFRA WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        21              701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V9, binary
                  cls
clus                 0   1
  PDGFRA MUTATED     2  18
  PDGFRA WILD-TYPE  33 648
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDGFRA MUTATED      2   18
  PDGFRA WILD-TYPE   33  648
                        clus
vv                       PDGFRA MUTATED PDGFRA WILD-TYPE
  HISPANIC OR LATINO                  2               33
  NOT HISPANIC OR LATINO             18              648
[1] 2 2
[1] FALSE

Clustering(28) Variable = NUP210L MUTATION ANALYSIS
D28V1, survival
                   sevent
clus2                 0   1
  NUP210L MUTATED     7   4
  NUP210L WILD-TYPE 446 330
  NUP210L MUTATED NUP210L WILD-TYPE 
               11               776 
  NUP210L MUTATED NUP210L WILD-TYPE 
                4               330 
$`NUP210L MUTATED`
TCGA-06-0749 TCGA-06-5415 TCGA-06-6700 TCGA-12-5301 TCGA-27-1835 TCGA-32-4208 
        2.70         8.55         4.77         2.04        21.30        21.14 
TCGA-76-4932 TCGA-CS-6188 TCGA-DU-6392 TCGA-DU-8164 TCGA-P5-A5F4 
       47.93        23.84       211.17        21.40         0.76 

$`NUP210L WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
       12.85         4.77         1.55         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        3.22        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       40.54        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4209 TCGA-32-4210 
       15.95         8.84        22.78        25.18        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.17         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       17.69        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       23.74        14.60        20.68        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        7.63         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  NUP210L MUTATED NUP210L WILD-TYPE 
             0.76              0.03 
  NUP210L MUTATED NUP210L WILD-TYPE 
           211.17            182.33 
  NUP210L MUTATED NUP210L WILD-TYPE 
           21.140            16.815 
[1] "0.8 - 211.2 (21.1)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.4"
D28V2, continuous
D28V3, binary
                   cls
clus                  0   1
  NUP210L MUTATED     7   4
  NUP210L WILD-TYPE 271 508
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NUP210L MUTATED      7    4
  NUP210L WILD-TYPE  271  508
                        clus
vv                       NUP210L MUTATED NUP210L WILD-TYPE
  BRAIN                                7               271
  CENTRAL NERVOUS SYSTEM               4               508
[1] 2 2
[1] FALSE
D28V4, binary
                   cls
clus                  0   1
  NUP210L MUTATED     4   7
  NUP210L WILD-TYPE 325 454
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NUP210L MUTATED      4    7
  NUP210L WILD-TYPE  325  454
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  FEMALE               4               325
  MALE                 7               454
[1] 2 2
[1] FALSE
D28V5, binary
                   cls
clus                  0   1
  NUP210L MUTATED     1  10
  NUP210L WILD-TYPE 231 498
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NUP210L MUTATED      1   10
  NUP210L WILD-TYPE  231  498
     clus
vv    NUP210L MUTATED NUP210L WILD-TYPE
  NO                1               231
  YES              10               498
[1] 2 2
[1] FALSE
D28V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NUP210L MUTATED             2                             0                0
  NUP210L WILD-TYPE         190                             9              130
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NUP210L MUTATED                   2                   1
  NUP210L WILD-TYPE               188                   3
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  NUP210L MUTATED                                 6
  NUP210L WILD-TYPE                             259
D28V7, multiclass
                                 clus
vv                                NUP210L MUTATED NUP210L WILD-TYPE
  ASTROCYTOMA                                   2               190
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              0               130
  OLIGODENDROGLIOMA                             2               188
  TREATED PRIMARY GBM                           1                 3
  UNTREATED PRIMARY (DE NOVO) GBM               6               259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NUP210L MUTATED                                  0     0
  NUP210L WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  NUP210L MUTATED                           1    10
  NUP210L WILD-TYPE                        37   712
D28V8, multiclass
                                  clus
vv                                 NUP210L MUTATED NUP210L WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      1                37
  WHITE                                         10               712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V9, binary
                   cls
clus                  0   1
  NUP210L MUTATED     0  10
  NUP210L WILD-TYPE  35 656
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NUP210L MUTATED      0   10
  NUP210L WILD-TYPE   35  656
                        clus
vv                       NUP210L MUTATED NUP210L WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO              10               656
[1] 2 2
[1] FALSE

Clustering(29) Variable = IRS4 MUTATION ANALYSIS
D29V1, survival
                sevent
clus2              0   1
  IRS4 MUTATED     8   2
  IRS4 WILD-TYPE 445 332
  IRS4 MUTATED IRS4 WILD-TYPE 
            10            777 
  IRS4 MUTATED IRS4 WILD-TYPE 
             2            332 
$`IRS4 MUTATED`
TCGA-28-1753 TCGA-28-2509 TCGA-28-5204 TCGA-DB-A4XD TCGA-DB-A64L TCGA-DU-6392 
        1.22         4.77        14.93        39.78        24.20       211.17 
TCGA-E1-5304 TCGA-HT-8108 TCGA-HT-8564 TCGA-S9-A6WG 
       41.13         2.50        15.72        85.55 

$`IRS4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 
        3.12         0.66         7.30         5.26        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        46.72        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       67.46        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        0.46         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       13.74        28.27         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       75.25       135.22        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  IRS4 MUTATED IRS4 WILD-TYPE 
          1.22           0.03 
  IRS4 MUTATED IRS4 WILD-TYPE 
        211.17         182.33 
  IRS4 MUTATED IRS4 WILD-TYPE 
         19.96          16.83 
[1] "1.2 - 211.2 (20.0)" "0.0 - 182.3 (16.8)"
[1] "hr=" "3.3"
D29V2, continuous
D29V3, binary
                cls
clus               0   1
  IRS4 MUTATED     3   7
  IRS4 WILD-TYPE 275 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      3    7
  IRS4 WILD-TYPE  275  505
                        clus
vv                       IRS4 MUTATED IRS4 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            7            505
[1] 2 2
[1] FALSE
D29V4, binary
                cls
clus               0   1
  IRS4 MUTATED     4   6
  IRS4 WILD-TYPE 325 455
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      4    6
  IRS4 WILD-TYPE  325  455
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  FEMALE            4            325
  MALE              6            455
[1] 2 2
[1] FALSE
D29V5, binary
                cls
clus               0   1
  IRS4 MUTATED     3   7
  IRS4 WILD-TYPE 229 501
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      3    7
  IRS4 WILD-TYPE  229  501
     clus
vv    IRS4 MUTATED IRS4 WILD-TYPE
  NO             3            229
  YES            7            501
[1] 2 2
[1] FALSE
D29V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  IRS4 MUTATED             5                             0                0
  IRS4 WILD-TYPE         187                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  IRS4 MUTATED                   2                   0
  IRS4 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  IRS4 MUTATED                                 3
  IRS4 WILD-TYPE                             262
D29V7, multiclass
                                 clus
vv                                IRS4 MUTATED IRS4 WILD-TYPE
  ASTROCYTOMA                                5            187
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  IRS4 MUTATED                                  0     0
  IRS4 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  IRS4 MUTATED                           0    10
  IRS4 WILD-TYPE                        38   712
D29V8, multiclass
                                  clus
vv                                 IRS4 MUTATED IRS4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                      10            712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V9, binary
                cls
clus               0   1
  IRS4 MUTATED     2   7
  IRS4 WILD-TYPE  33 659
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      2    7
  IRS4 WILD-TYPE   33  659
                        clus
vv                       IRS4 MUTATED IRS4 WILD-TYPE
  HISPANIC OR LATINO                2             33
  NOT HISPANIC OR LATINO            7            659
[1] 2 2
[1] FALSE

Clustering(30) Variable = NKD2 MUTATION ANALYSIS
D30V1, survival
                sevent
clus2              0   1
  NKD2 MUTATED     3   1
  NKD2 WILD-TYPE 450 333
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            783 
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            333 
$`NKD2 MUTATED`
TCGA-CS-6668 TCGA-S9-A6TZ TCGA-VW-A8FI TCGA-WY-A85A 
       49.94        36.82         8.05        43.40 

$`NKD2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
        7.56        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6U0 TCGA-S9-A6U1 
       18.77        41.10        28.14        35.38        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85B 
       23.21        51.06        13.32        43.96        39.88        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  NKD2 MUTATED NKD2 WILD-TYPE 
          8.05           0.03 
  NKD2 MUTATED NKD2 WILD-TYPE 
         49.94         211.17 
  NKD2 MUTATED NKD2 WILD-TYPE 
         40.11          16.80 
[1] "8.1 - 49.9 (40.1)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2.4"
D30V2, continuous
D30V3, binary
                cls
clus               0   1
  NKD2 MUTATED     0   4
  NKD2 WILD-TYPE 278 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKD2 MUTATED      0    4
  NKD2 WILD-TYPE  278  508
                        clus
vv                       NKD2 MUTATED NKD2 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D30V4, binary
                cls
clus               0   1
  NKD2 MUTATED     2   2
  NKD2 WILD-TYPE 327 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKD2 MUTATED      2    2
  NKD2 WILD-TYPE  327  459
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  FEMALE            2            327
  MALE              2            459
[1] 2 2
[1] FALSE
D30V5, binary
                cls
clus               0   1
  NKD2 MUTATED     3   1
  NKD2 WILD-TYPE 229 507
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKD2 MUTATED      3    1
  NKD2 WILD-TYPE  229  507
     clus
vv    NKD2 MUTATED NKD2 WILD-TYPE
  NO             3            229
  YES            1            507
[1] 2 2
[1] FALSE
D30V6, continuous
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             2            508 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0167     TCGA-06-0168     TCGA-06-0169 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0185 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0188     TCGA-06-0192     TCGA-06-0195     TCGA-06-0214 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0238     TCGA-06-0240     TCGA-06-0241 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0646     TCGA-06-0648     TCGA-06-0686 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0878 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-5408     TCGA-06-5410     TCGA-06-5411     TCGA-06-5412 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-5413     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-5418     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6695     TCGA-06-6697 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-06-6700     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5299     TCGA-12-5301 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-14-0740     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-4157     TCGA-15-0742     TCGA-19-1390 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5954     TCGA-19-5958 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5139     TCGA-26-6173 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-2502     TCGA-28-2509 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-28-2513     TCGA-28-2514     TCGA-28-5204     TCGA-28-5207 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5219     TCGA-28-5220 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-2615     TCGA-32-2638 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-32-4213     TCGA-41-2571     TCGA-41-2573     TCGA-41-2575 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-4938     TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5396     TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6290     TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE     TCGA-DB-A64L 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S     TCGA-DB-A64U 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X     TCGA-DB-A75L 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D     TCGA-DH-A66F 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU     TCGA-DH-A7UV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853     TCGA-DU-5854 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871     TCGA-DU-5874 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403     TCGA-DU-6404 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013     TCGA-DU-7015 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294     TCGA-DU-7298 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8165 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YE     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YK     TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YO     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7636 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7638     TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A6J1     TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7607     TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8113     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5RA     TCGA-HT-A5RC     TCGA-HT-A615     TCGA-HT-A617 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A74L     TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A731     TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-RY-A845     TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2     TCGA-S9-A6U5 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA     TCGA-S9-A6UB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM     TCGA-S9-A6WN 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7J3 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY     TCGA-S9-A7QZ 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3     TCGA-S9-A7R4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V     TCGA-S9-A89Z 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5     TCGA-TM-A7CA 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C     TCGA-TM-A84F 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I     TCGA-TM-A84J 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O     TCGA-TM-A84Q 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T     TCGA-TQ-A7RG 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN     TCGA-TQ-A7RO 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD     TCGA-VM-A8CE 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858     TCGA-WY-A859 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NKD2 MUTATED             3                             0                0
  NKD2 WILD-TYPE         189                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NKD2 MUTATED                   1                   0
  NKD2 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  NKD2 MUTATED                                 0
  NKD2 WILD-TYPE                             265
D30V7, multiclass
                                 clus
vv                                NKD2 MUTATED NKD2 WILD-TYPE
  ASTROCYTOMA                                3            189
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NKD2 MUTATED                                  0     0
  NKD2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  NKD2 MUTATED                           0     4
  NKD2 WILD-TYPE                        38   718
D30V8, multiclass
                                  clus
vv                                 NKD2 MUTATED NKD2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       4            718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V9, binary
                cls
clus               0   1
  NKD2 MUTATED     0   3
  NKD2 WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKD2 MUTATED      0    3
  NKD2 WILD-TYPE   35  663
                        clus
vv                       NKD2 MUTATED NKD2 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(31) Variable = MED9 MUTATION ANALYSIS
D31V1, survival
                sevent
clus2              0   1
  MED9 MUTATED     2   1
  MED9 WILD-TYPE 451 333
  MED9 MUTATED MED9 WILD-TYPE 
             3            784 
  MED9 MUTATED MED9 WILD-TYPE 
             1            333 
$`MED9 MUTATED`
TCGA-DB-A64O TCGA-DU-8163 TCGA-QH-A6CY 
       25.48        20.68         2.20 

$`MED9 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8165 
        2.76         5.10        23.74        14.60        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CZ 
       19.33        14.83        14.53        13.61        12.23         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  MED9 MUTATED MED9 WILD-TYPE 
          2.20           0.03 
  MED9 MUTATED MED9 WILD-TYPE 
         25.48         211.17 
  MED9 MUTATED MED9 WILD-TYPE 
        20.680         16.815 
[1] "2.2 - 25.5 (20.7)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
                cls
clus               0   1
  MED9 MUTATED     0   3
  MED9 WILD-TYPE 278 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  MED9 MUTATED      0    3
  MED9 WILD-TYPE  278  509
                        clus
vv                       MED9 MUTATED MED9 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D31V4, binary
                cls
clus               0   1
  MED9 MUTATED     0   3
  MED9 WILD-TYPE 329 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  MED9 MUTATED      0    3
  MED9 WILD-TYPE  329  458
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  FEMALE            0            329
  MALE              3            458
[1] 2 2
[1] FALSE
D31V5, binary
                cls
clus               0   1
  MED9 MUTATED     0   3
  MED9 WILD-TYPE 232 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  MED9 MUTATED      0    3
  MED9 WILD-TYPE  232  505
     clus
vv    MED9 MUTATED MED9 WILD-TYPE
  NO             0            232
  YES            3            505
[1] 2 2
[1] FALSE
D31V6, continuous
[1] "Remove cluster labels:" "MED9 MUTATED"          
clus
  MED9 MUTATED MED9 WILD-TYPE 
             2            508 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0167     TCGA-06-0168     TCGA-06-0169 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0185 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0188     TCGA-06-0192     TCGA-06-0195     TCGA-06-0214 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0238     TCGA-06-0240     TCGA-06-0241 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0646     TCGA-06-0648     TCGA-06-0686 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0878 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-5408     TCGA-06-5410     TCGA-06-5411     TCGA-06-5412 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-5413     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-5418     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6695     TCGA-06-6697 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-06-6700     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5299     TCGA-12-5301 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-14-0740     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-4157     TCGA-15-0742     TCGA-19-1390 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5954     TCGA-19-5958 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5139     TCGA-26-6173 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-2502     TCGA-28-2509 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-28-2513     TCGA-28-2514     TCGA-28-5204     TCGA-28-5207 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5219     TCGA-28-5220 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-2615     TCGA-32-2638 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-32-4213     TCGA-41-2571     TCGA-41-2573     TCGA-41-2575 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-4938     TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-5396     TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-6290     TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-6668     TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A64L     TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A75L     TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DH-A7UV     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5874     TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6410     TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7298     TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8165 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-A7YE     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-A7YK     TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-A7YO     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7636 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-7638     TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-A6J1     TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7607     TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8113     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-A5RA     TCGA-HT-A5RC     TCGA-HT-A615     TCGA-HT-A617 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-A74L     TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A731     TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CZ 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840     TCGA-RY-A845 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6TZ 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2     TCGA-S9-A6U5 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA     TCGA-S9-A6UB 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM     TCGA-S9-A6WN 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7J3 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY     TCGA-S9-A7QZ 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3     TCGA-S9-A7R4 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V     TCGA-S9-A89Z 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5     TCGA-TM-A7CA 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C     TCGA-TM-A84F 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I     TCGA-TM-A84J 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O     TCGA-TM-A84Q 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T     TCGA-TQ-A7RG 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN     TCGA-TQ-A7RO 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD     TCGA-VM-A8CE 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858     TCGA-WY-A859 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MED9 MUTATED             0                             0                3
  MED9 WILD-TYPE         192                             9              127
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MED9 MUTATED                   0                   0
  MED9 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  MED9 MUTATED                                 0
  MED9 WILD-TYPE                             265
D31V7, multiclass
                                 clus
vv                                MED9 MUTATED MED9 WILD-TYPE
  ASTROCYTOMA                                0            192
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           3            127
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MED9 MUTATED                                  0     0
  MED9 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  MED9 MUTATED                           0     3
  MED9 WILD-TYPE                        38   719
D31V8, multiclass
                                  clus
vv                                 MED9 MUTATED MED9 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V9, binary
                cls
clus               0   1
  MED9 MUTATED     0   3
  MED9 WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  MED9 MUTATED      0    3
  MED9 WILD-TYPE   35  663
                        clus
vv                       MED9 MUTATED MED9 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(32) Variable = HTRA2 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2               0   1
  HTRA2 MUTATED     5   0
  HTRA2 WILD-TYPE 448 334
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             782 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              0             334 
$`HTRA2 MUTATED`
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-P5-A5F1 TCGA-P5-A5F6 TCGA-S9-A7R3 
        0.07         0.10         5.88         1.28        99.06 

$`HTRA2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RC TCGA-HT-A614 
       26.04         0.13        20.22        27.35         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        4.11         7.63         0.76         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       10.39        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  HTRA2 MUTATED HTRA2 WILD-TYPE 
           0.07            0.03 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
          99.06          211.17 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
           1.28           16.88 
[1] "0.1 - 99.1 (1.3)"   "0.0 - 211.2 (16.9)"
[1] "hr="     "3300000"
D32V2, continuous
D32V3, binary
                 cls
clus                0   1
  HTRA2 MUTATED     0   5
  HTRA2 WILD-TYPE 278 507
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTRA2 MUTATED      0    5
  HTRA2 WILD-TYPE  278  507
                        clus
vv                       HTRA2 MUTATED HTRA2 WILD-TYPE
  BRAIN                              0             278
  CENTRAL NERVOUS SYSTEM             5             507
[1] 2 2
[1] FALSE
D32V4, binary
                 cls
clus                0   1
  HTRA2 MUTATED     2   3
  HTRA2 WILD-TYPE 327 458
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTRA2 MUTATED      2    3
  HTRA2 WILD-TYPE  327  458
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  FEMALE             2             327
  MALE               3             458
[1] 2 2
[1] FALSE
D32V5, binary
                 cls
clus                0   1
  HTRA2 MUTATED     1   0
  HTRA2 WILD-TYPE 231 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTRA2 MUTATED      1    0
  HTRA2 WILD-TYPE  231  508
     clus
vv    HTRA2 MUTATED HTRA2 WILD-TYPE
  NO              1             231
  YES             0             508
[1] 2 2
[1] FALSE
D32V6, continuous
[1] "Remove cluster labels:" "HTRA2 MUTATED"         
clus
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5139      TCGA-26-6173 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-2502      TCGA-28-2509 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5219      TCGA-28-5220 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-2615      TCGA-32-2638 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-32-4213      TCGA-41-2571      TCGA-41-2573      TCGA-41-2575 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-CS-4938      TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-CS-4944      TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-CS-5396      TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-CS-6290      TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DB-A64L      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DB-A75L      TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DH-A7UV      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-5874      TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-6410      TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-7298      TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-8165      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-A6S2      TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-A76R      TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-DU-A7TB      TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-5322      TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-A7YJ      TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YM 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-A7YN      TCGA-E1-A7YO      TCGA-E1-A7YQ      TCGA-E1-A7YS 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-A7YV      TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-E1-A7Z4      TCGA-E1-A7Z6      TCGA-FG-5963      TCGA-FG-5965 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7638      TCGA-FG-8181      TCGA-FG-8185 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A60J 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-FG-A60L      TCGA-FG-A6J1      TCGA-FG-A6J3      TCGA-FG-A711 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-FG-A713      TCGA-FG-A87Q      TCGA-HT-7468      TCGA-HT-7470 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7477      TCGA-HT-7481      TCGA-HT-7482 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7611 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7689      TCGA-HT-7692      TCGA-HT-7693 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7875      TCGA-HT-7884      TCGA-HT-8013 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8113      TCGA-HT-8564      TCGA-HT-A4DV 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5RA      TCGA-HT-A5RC      TCGA-HT-A615 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-A617      TCGA-HT-A618      TCGA-HT-A61A      TCGA-HT-A61B 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-HT-A61C      TCGA-HT-A74L      TCGA-IK-7675      TCGA-KT-A74X 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-KT-A7W1      TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-P5-A5EX      TCGA-P5-A5F0      TCGA-P5-A5F2      TCGA-P5-A5F4 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-P5-A731      TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-RY-A845      TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A6TZ      TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A6UB      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A7IZ      TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A7J3      TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R4 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V      TCGA-S9-A89Z 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5      TCGA-TM-A7CA 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C      TCGA-TM-A84F 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" "HTRA2 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  HTRA2 MUTATED             3                             0                0
  HTRA2 WILD-TYPE         189                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  HTRA2 MUTATED                   2                   0
  HTRA2 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  HTRA2 MUTATED                                 0
  HTRA2 WILD-TYPE                             265
D32V7, multiclass
                                 clus
vv                                HTRA2 MUTATED HTRA2 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             0             265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  HTRA2 MUTATED                                  0     0
  HTRA2 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  HTRA2 MUTATED                           0     5
  HTRA2 WILD-TYPE                        38   717
D32V8, multiclass
                                  clus
vv                                 HTRA2 MUTATED HTRA2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        5             717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V9, binary
                 cls
clus                0   1
  HTRA2 MUTATED     1   4
  HTRA2 WILD-TYPE  34 662
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTRA2 MUTATED      1    4
  HTRA2 WILD-TYPE   34  662
                        clus
vv                       HTRA2 MUTATED HTRA2 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             4             662
[1] 2 2
[1] FALSE

Clustering(33) Variable = BCOR MUTATION ANALYSIS
D33V1, survival
                sevent
clus2              0   1
  BCOR MUTATED    12  10
  BCOR WILD-TYPE 441 324
  BCOR MUTATED BCOR WILD-TYPE 
            22            765 
  BCOR MUTATED BCOR WILD-TYPE 
            10            324 
$`BCOR MUTATED`
TCGA-06-0140 TCGA-06-0166 TCGA-06-0195 TCGA-06-1804 TCGA-06-2559 TCGA-32-2495 
        0.20         5.85         7.40        13.61         4.93        15.02 
TCGA-87-5896 TCGA-CS-4942 TCGA-DB-5276 TCGA-DB-A64W TCGA-DB-A64X TCGA-DH-A7UV 
       26.30        43.89        72.92        14.40        18.51        18.61 
TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-7302 TCGA-E1-5318 TCGA-HT-7610 TCGA-HW-A5KJ 
      211.17        11.64        60.30        78.21        56.09        10.55 
TCGA-S9-A6WL TCGA-S9-A7R7 TCGA-TQ-A7RQ TCGA-VV-A829 
       31.10        98.63        26.14        37.05 

$`BCOR WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0167 TCGA-06-0168 
       10.45         3.19        10.82        10.65        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       44.58        15.42        38.96         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       16.57        20.78        26.76        15.32         1.08        12.49 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
       17.65        12.56        30.64         5.95        16.64         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         5.10         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42        13.78        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
        4.67        12.69        16.93        12.23        20.78        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
       17.72         4.70         7.69        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A75K TCGA-DB-A75L 
       31.40        27.45        27.81        29.23        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DU-5847 
       17.19        54.25        23.21        17.46        13.71        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
        7.04       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       62.01        25.91        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
       57.93       134.27        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       42.54         6.18        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       31.20        30.05        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       39.16        20.02        23.47        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  BCOR MUTATED BCOR WILD-TYPE 
          0.20           0.03 
  BCOR MUTATED BCOR WILD-TYPE 
        211.17         182.33 
  BCOR MUTATED BCOR WILD-TYPE 
        22.375         16.730 
[1] "0.2 - 211.2 (22.4)" "0.0 - 182.3 (16.7)"
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
                cls
clus               0   1
  BCOR MUTATED     7  15
  BCOR WILD-TYPE 271 497
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCOR MUTATED      7   15
  BCOR WILD-TYPE  271  497
                        clus
vv                       BCOR MUTATED BCOR WILD-TYPE
  BRAIN                             7            271
  CENTRAL NERVOUS SYSTEM           15            497
[1] 2 2
[1] FALSE
D33V4, binary
                cls
clus               0   1
  BCOR MUTATED    12  10
  BCOR WILD-TYPE 317 451
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCOR MUTATED     12   10
  BCOR WILD-TYPE  317  451
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  FEMALE           12            317
  MALE             10            451
[1] 2 2
[1] FALSE
D33V5, binary
                cls
clus               0   1
  BCOR MUTATED     7  15
  BCOR WILD-TYPE 225 493
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCOR MUTATED      7   15
  BCOR WILD-TYPE  225  493
     clus
vv    BCOR MUTATED BCOR WILD-TYPE
  NO             7            225
  YES           15            493
[1] 2 2
[1] FALSE
D33V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  BCOR MUTATED             6                             1                5
  BCOR WILD-TYPE         186                             8              125
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  BCOR MUTATED                   4                   1
  BCOR WILD-TYPE               186                   3
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  BCOR MUTATED                                 5
  BCOR WILD-TYPE                             260
D33V7, multiclass
                                 clus
vv                                BCOR MUTATED BCOR WILD-TYPE
  ASTROCYTOMA                                6            186
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                           5            125
  OLIGODENDROGLIOMA                          4            186
  TREATED PRIMARY GBM                        1              3
  UNTREATED PRIMARY (DE NOVO) GBM            5            260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  BCOR MUTATED                                  0     0
  BCOR WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  BCOR MUTATED                           1    21
  BCOR WILD-TYPE                        37   701
D33V8, multiclass
                                  clus
vv                                 BCOR MUTATED BCOR WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   1             37
  WHITE                                      21            701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V9, binary
                cls
clus               0   1
  BCOR MUTATED     1  19
  BCOR WILD-TYPE  34 647
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCOR MUTATED      1   19
  BCOR WILD-TYPE   34  647
                        clus
vv                       BCOR MUTATED BCOR WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO           19            647
[1] 2 2
[1] FALSE

Clustering(34) Variable = REN MUTATION ANALYSIS
D34V1, survival
               sevent
clus2             0   1
  REN MUTATED     1   6
  REN WILD-TYPE 452 328
  REN MUTATED REN WILD-TYPE 
            7           780 
  REN MUTATED REN WILD-TYPE 
            6           328 
$`REN MUTATED`
TCGA-06-5411 TCGA-32-2495 TCGA-41-3392 TCGA-74-6577 TCGA-76-6662 TCGA-DU-7292 
        8.35        15.02         0.99         4.34        34.45         7.96 
TCGA-DU-A7TD 
        7.50 

$`REN WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       31.50        11.74         3.55         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       16.93        12.23        20.78        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
       20.91        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 
       20.98         4.83         5.03        23.90        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 
        8.84        90.77        30.67        26.30        10.36        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       51.52        37.38        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  REN MUTATED REN WILD-TYPE 
         0.99          0.03 
  REN MUTATED REN WILD-TYPE 
        34.45        211.17 
  REN MUTATED REN WILD-TYPE 
         7.96         16.93 
[1] "1.0 - 34.5 (8.0)"   "0.0 - 211.2 (16.9)"
[1] "hr=" "4.2"
D34V2, continuous
D34V3, binary
               cls
clus              0   1
  REN MUTATED     5   2
  REN WILD-TYPE 273 510
[1] "tbl2"
               cls
clus            [,1] [,2]
  REN MUTATED      5    2
  REN WILD-TYPE  273  510
                        clus
vv                       REN MUTATED REN WILD-TYPE
  BRAIN                            5           273
  CENTRAL NERVOUS SYSTEM           2           510
[1] 2 2
[1] FALSE
D34V4, binary
               cls
clus              0   1
  REN MUTATED     1   6
  REN WILD-TYPE 328 455
[1] "tbl2"
               cls
clus            [,1] [,2]
  REN MUTATED      1    6
  REN WILD-TYPE  328  455
        clus
vv       REN MUTATED REN WILD-TYPE
  FEMALE           1           328
  MALE             6           455
[1] 2 2
[1] FALSE
D34V5, binary
               cls
clus              0   1
  REN MUTATED     1   6
  REN WILD-TYPE 231 502
[1] "tbl2"
               cls
clus            [,1] [,2]
  REN MUTATED      1    6
  REN WILD-TYPE  231  502
     clus
vv    REN MUTATED REN WILD-TYPE
  NO            1           231
  YES           6           502
[1] 2 2
[1] FALSE
D34V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  REN MUTATED             1                             0                1
  REN WILD-TYPE         191                             9              129
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  REN MUTATED                   0                   1
  REN WILD-TYPE               190                   3
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  REN MUTATED                                 4
  REN WILD-TYPE                             261
D34V7, multiclass
                                 clus
vv                                REN MUTATED REN WILD-TYPE
  ASTROCYTOMA                               1           191
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          1           129
  OLIGODENDROGLIOMA                         0           190
  TREATED PRIMARY GBM                       1             3
  UNTREATED PRIMARY (DE NOVO) GBM           4           261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  REN MUTATED                                  0     0
  REN WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  REN MUTATED                           0     6
  REN WILD-TYPE                        38   716
D34V8, multiclass
                                  clus
vv                                 REN MUTATED REN WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  0            38
  WHITE                                      6           716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V9, binary
               cls
clus              0   1
  REN MUTATED     0   6
  REN WILD-TYPE  35 660
[1] "tbl2"
               cls
clus            [,1] [,2]
  REN MUTATED      0    6
  REN WILD-TYPE   35  660
                        clus
vv                       REN MUTATED REN WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO           6           660
[1] 2 2
[1] FALSE

Clustering(35) Variable = RBPJ MUTATION ANALYSIS
D35V1, survival
                sevent
clus2              0   1
  RBPJ MUTATED     6   1
  RBPJ WILD-TYPE 447 333
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            780 
  RBPJ MUTATED RBPJ WILD-TYPE 
             1            333 
$`RBPJ MUTATED`
TCGA-DH-A7UR TCGA-DU-6410 TCGA-FG-5964 TCGA-HT-8106 TCGA-HT-A5R9 TCGA-S9-A6WL 
       54.25         7.96        52.21         0.10         0.07        31.10 
TCGA-S9-A7IS 
        7.92 

$`RBPJ WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
      114.08         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       25.48        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         6.25         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA 
       15.72         0.23        26.04         0.13        20.22        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       85.55        38.56        84.99        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       18.64        14.07        36.13        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  RBPJ MUTATED RBPJ WILD-TYPE 
          0.07           0.03 
  RBPJ MUTATED RBPJ WILD-TYPE 
         54.25         211.17 
  RBPJ MUTATED RBPJ WILD-TYPE 
          7.96          16.83 
[1] "0.1 - 54.2 (8.0)"   "0.0 - 211.2 (16.8)"
[1] "hr=" "2.7"
D35V2, continuous
D35V3, binary
                cls
clus               0   1
  RBPJ MUTATED     0   7
  RBPJ WILD-TYPE 278 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBPJ MUTATED      0    7
  RBPJ WILD-TYPE  278  505
                        clus
vv                       RBPJ MUTATED RBPJ WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            7            505
[1] 2 2
[1] FALSE
D35V4, binary
                cls
clus               0   1
  RBPJ MUTATED     3   4
  RBPJ WILD-TYPE 326 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBPJ MUTATED      3    4
  RBPJ WILD-TYPE  326  457
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  FEMALE            3            326
  MALE              4            457
[1] 2 2
[1] FALSE
D35V5, binary
                cls
clus               0   1
  RBPJ MUTATED     3   3
  RBPJ WILD-TYPE 229 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBPJ MUTATED      3    3
  RBPJ WILD-TYPE  229  505
     clus
vv    RBPJ MUTATED RBPJ WILD-TYPE
  NO             3            229
  YES            3            505
[1] 2 2
[1] FALSE
D35V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  RBPJ MUTATED             3                             0                0
  RBPJ WILD-TYPE         189                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  RBPJ MUTATED                   4                   0
  RBPJ WILD-TYPE               186                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  RBPJ MUTATED                                 0
  RBPJ WILD-TYPE                             265
D35V7, multiclass
                                 clus
vv                                RBPJ MUTATED RBPJ WILD-TYPE
  ASTROCYTOMA                                3            189
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          4            186
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RBPJ MUTATED                                  0     0
  RBPJ WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RBPJ MUTATED                           0     7
  RBPJ WILD-TYPE                        38   715
D35V8, multiclass
                                  clus
vv                                 RBPJ MUTATED RBPJ WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       7            715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V9, binary
                cls
clus               0   1
  RBPJ MUTATED     0   7
  RBPJ WILD-TYPE  35 659
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBPJ MUTATED      0    7
  RBPJ WILD-TYPE   35  659
                        clus
vv                       RBPJ MUTATED RBPJ WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            7            659
[1] 2 2
[1] FALSE

Clustering(36) Variable = DDX5 MUTATION ANALYSIS
D36V1, survival
                sevent
clus2              0   1
  DDX5 MUTATED     5   3
  DDX5 WILD-TYPE 448 331
  DDX5 MUTATED DDX5 WILD-TYPE 
             8            779 
  DDX5 MUTATED DDX5 WILD-TYPE 
             3            331 
$`DDX5 MUTATED`
TCGA-06-0142 TCGA-32-1986 TCGA-76-4925 TCGA-CS-4943 TCGA-DU-5853 TCGA-DU-6392 
        2.20        12.69         4.80        18.15        13.38       211.17 
TCGA-FG-8186 TCGA-HT-7687 
       16.01         0.10 

$`DDX5 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        0.20        10.29         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1991 
       15.39         0.10        19.50         1.18         4.67        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 
        3.45        20.91         4.34        14.33         7.50         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 
       18.61        18.02        14.56        17.46         6.74         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       14.24        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  DDX5 MUTATED DDX5 WILD-TYPE 
          0.10           0.03 
  DDX5 MUTATED DDX5 WILD-TYPE 
        211.17         182.33 
  DDX5 MUTATED DDX5 WILD-TYPE 
        13.035         16.930 
[1] "0.1 - 211.2 (13.0)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.3"
D36V2, continuous
D36V3, binary
                cls
clus               0   1
  DDX5 MUTATED     3   5
  DDX5 WILD-TYPE 275 507
[1] "tbl2"
                cls
clus             [,1] [,2]
  DDX5 MUTATED      3    5
  DDX5 WILD-TYPE  275  507
                        clus
vv                       DDX5 MUTATED DDX5 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            5            507
[1] 2 2
[1] FALSE
D36V4, binary
                cls
clus               0   1
  DDX5 MUTATED     2   6
  DDX5 WILD-TYPE 327 455
[1] "tbl2"
                cls
clus             [,1] [,2]
  DDX5 MUTATED      2    6
  DDX5 WILD-TYPE  327  455
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  FEMALE            2            327
  MALE              6            455
[1] 2 2
[1] FALSE
D36V5, binary
                cls
clus               0   1
  DDX5 MUTATED     2   5
  DDX5 WILD-TYPE 230 503
[1] "tbl2"
                cls
clus             [,1] [,2]
  DDX5 MUTATED      2    5
  DDX5 WILD-TYPE  230  503
     clus
vv    DDX5 MUTATED DDX5 WILD-TYPE
  NO             2            230
  YES            5            503
[1] 2 2
[1] FALSE
D36V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  DDX5 MUTATED             2                             1                2
  DDX5 WILD-TYPE         190                             8              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  DDX5 MUTATED                   1                   0
  DDX5 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  DDX5 MUTATED                                 2
  DDX5 WILD-TYPE                             263
D36V7, multiclass
                                 clus
vv                                DDX5 MUTATED DDX5 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            2            263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DDX5 MUTATED                                  0     0
  DDX5 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  DDX5 MUTATED                           0     8
  DDX5 WILD-TYPE                        38   714
D36V8, multiclass
                                  clus
vv                                 DDX5 MUTATED DDX5 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V9, binary
                cls
clus               0   1
  DDX5 MUTATED     1   6
  DDX5 WILD-TYPE  34 660
[1] "tbl2"
                cls
clus             [,1] [,2]
  DDX5 MUTATED      1    6
  DDX5 WILD-TYPE   34  660
                        clus
vv                       DDX5 MUTATED DDX5 WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            6            660
[1] 2 2
[1] FALSE

Clustering(37) Variable = PTPN11 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2                0   1
  PTPN11 MUTATED     6   5
  PTPN11 WILD-TYPE 447 329
  PTPN11 MUTATED PTPN11 WILD-TYPE 
              11              776 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               5              329 
$`PTPN11 MUTATED`
TCGA-06-5412 TCGA-14-3476 TCGA-19-2620 TCGA-74-6575 TCGA-CS-5395 TCGA-FG-7641 
        4.54         0.39         4.87        20.91        21.01        20.61 
TCGA-HT-7854 TCGA-HT-7857 TCGA-HT-7860 TCGA-VM-A8C8 TCGA-VW-A8FI 
       39.48         0.23         0.49        43.04         8.05 

$`PTPN11 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 
       31.50        11.74         3.55         8.35         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-4157 TCGA-15-0742 
       17.85         7.63         7.17        17.49         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        9.67         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       17.88        40.08        22.55        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7855 
        0.10         2.96        17.52         6.90        14.53        19.23 
TCGA-HT-7856 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       39.09        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       31.36        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-W9-A837 
       20.02        23.47        37.05        16.01        23.21        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  PTPN11 MUTATED PTPN11 WILD-TYPE 
            0.23             0.03 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
           43.04           211.17 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
            8.05            16.83 
[1] "0.2 - 43.0 (8.1)"   "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D37V2, continuous
D37V3, binary
                  cls
clus                 0   1
  PTPN11 MUTATED     4   7
  PTPN11 WILD-TYPE 274 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN11 MUTATED      4    7
  PTPN11 WILD-TYPE  274  505
                        clus
vv                       PTPN11 MUTATED PTPN11 WILD-TYPE
  BRAIN                               4              274
  CENTRAL NERVOUS SYSTEM              7              505
[1] 2 2
[1] FALSE
D37V4, binary
                  cls
clus                 0   1
  PTPN11 MUTATED     5   6
  PTPN11 WILD-TYPE 324 455
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN11 MUTATED      5    6
  PTPN11 WILD-TYPE  324  455
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  FEMALE              5              324
  MALE                6              455
[1] 2 2
[1] FALSE
D37V5, binary
                  cls
clus                 0   1
  PTPN11 MUTATED     3   7
  PTPN11 WILD-TYPE 229 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN11 MUTATED      3    7
  PTPN11 WILD-TYPE  229  501
     clus
vv    PTPN11 MUTATED PTPN11 WILD-TYPE
  NO               3              229
  YES              7              501
[1] 2 2
[1] FALSE
D37V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PTPN11 MUTATED             4                             0                0
  PTPN11 WILD-TYPE         188                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PTPN11 MUTATED                   3                   0
  PTPN11 WILD-TYPE               187                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PTPN11 MUTATED                                 4
  PTPN11 WILD-TYPE                             261
D37V7, multiclass
                                 clus
vv                                PTPN11 MUTATED PTPN11 WILD-TYPE
  ASTROCYTOMA                                  4              188
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            3              187
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              4              261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PTPN11 MUTATED                                  0     0
  PTPN11 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PTPN11 MUTATED                           1     9
  PTPN11 WILD-TYPE                        37   713
D37V8, multiclass
                                  clus
vv                                 PTPN11 MUTATED PTPN11 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         9              713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V9, binary
                  cls
clus                 0   1
  PTPN11 MUTATED     0   7
  PTPN11 WILD-TYPE  35 659
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN11 MUTATED      0    7
  PTPN11 WILD-TYPE   35  659
                        clus
vv                       PTPN11 MUTATED PTPN11 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              7              659
[1] 2 2
[1] FALSE

Clustering(38) Variable = KDR MUTATION ANALYSIS
D38V1, survival
               sevent
clus2             0   1
  KDR MUTATED     4   9
  KDR WILD-TYPE 449 325
  KDR MUTATED KDR WILD-TYPE 
           13           774 
  KDR MUTATED KDR WILD-TYPE 
            9           325 
$`KDR MUTATED`
TCGA-06-0128 TCGA-06-0142 TCGA-06-0188 TCGA-06-0241 TCGA-06-0882 TCGA-12-5301 
       22.72         2.20        44.58        48.69        20.78         2.04 
TCGA-76-6282 TCGA-81-5910 TCGA-DU-6392 TCGA-DU-7006 TCGA-HT-7688 TCGA-HT-7874 
       17.06         1.61       211.17        11.47        31.69        37.15 
TCGA-HT-8104 
       12.23 

$`KDR WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.29         2.33        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0644 
       24.16         0.72        13.64        13.32        20.42        12.62 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       26.76        13.61        15.32         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
       17.65        12.56        30.64         5.95        16.64         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         5.10         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0740 
       10.95        34.92        14.53        14.93         3.22        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 TCGA-87-5896 
       23.90        34.45        18.64        36.20        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
        2.40        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 
        0.76        44.68         6.05        42.74         0.10        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       23.61         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8106 
       63.55         0.10        37.87        33.01         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  KDR MUTATED KDR WILD-TYPE 
         1.61          0.03 
  KDR MUTATED KDR WILD-TYPE 
       211.17        182.33 
  KDR MUTATED KDR WILD-TYPE 
       20.780        16.765 
[1] "1.6 - 211.2 (20.8)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.3"
D38V2, continuous
D38V3, binary
               cls
clus              0   1
  KDR MUTATED     8   5
  KDR WILD-TYPE 270 507
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED      8    5
  KDR WILD-TYPE  270  507
                        clus
vv                       KDR MUTATED KDR WILD-TYPE
  BRAIN                            8           270
  CENTRAL NERVOUS SYSTEM           5           507
[1] 2 2
[1] FALSE
D38V4, binary
               cls
clus              0   1
  KDR MUTATED     5   8
  KDR WILD-TYPE 324 453
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED      5    8
  KDR WILD-TYPE  324  453
        clus
vv       KDR MUTATED KDR WILD-TYPE
  FEMALE           5           324
  MALE             8           453
[1] 2 2
[1] FALSE
D38V5, binary
               cls
clus              0   1
  KDR MUTATED     2  10
  KDR WILD-TYPE 230 498
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED      2   10
  KDR WILD-TYPE  230  498
     clus
vv    KDR MUTATED KDR WILD-TYPE
  NO            2           230
  YES          10           498
[1] 2 2
[1] FALSE
D38V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KDR MUTATED             3                             1                0
  KDR WILD-TYPE         189                             8              130
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KDR MUTATED                   2                   0
  KDR WILD-TYPE               188                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  KDR MUTATED                                 7
  KDR WILD-TYPE                             258
D38V7, multiclass
                                 clus
vv                                KDR MUTATED KDR WILD-TYPE
  ASTROCYTOMA                               3           189
  GLIOBLASTOMA MULTIFORME (GBM)             1             8
  OLIGOASTROCYTOMA                          0           130
  OLIGODENDROGLIOMA                         2           188
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           7           258
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KDR MUTATED                                  0     0
  KDR WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  KDR MUTATED                           0    13
  KDR WILD-TYPE                        38   709
D38V8, multiclass
                                  clus
vv                                 KDR MUTATED KDR WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  0            38
  WHITE                                     13           709
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V9, binary
               cls
clus              0   1
  KDR MUTATED     0  12
  KDR WILD-TYPE  35 654
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED      0   12
  KDR WILD-TYPE   35  654
                        clus
vv                       KDR MUTATED KDR WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO          12           654
[1] 2 2
[1] FALSE

Clustering(39) Variable = RPL5 MUTATION ANALYSIS
D39V1, survival
                sevent
clus2              0   1
  RPL5 MUTATED     5   5
  RPL5 WILD-TYPE 448 329
  RPL5 MUTATED RPL5 WILD-TYPE 
            10            777 
  RPL5 MUTATED RPL5 WILD-TYPE 
             5            329 
$`RPL5 MUTATED`
TCGA-02-0047 TCGA-06-0154 TCGA-06-0216 TCGA-06-5413 TCGA-14-0790 TCGA-19-5947 
       14.73        13.94        24.16         8.81        13.78         6.64 
TCGA-26-6174 TCGA-DU-6392 TCGA-DU-A7TJ TCGA-S9-A6WH 
        2.33       211.17         0.56        38.56 

$`RPL5 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 
       10.29         2.20         2.33        46.59        12.33        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       44.58        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       15.02         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        8.35         4.54         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42        13.78        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 
        0.16         4.08        24.23         7.00         4.50        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 
        5.49         8.88        18.97         1.58         7.92         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
        7.50        44.42        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       75.25       135.22        85.55        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  RPL5 MUTATED RPL5 WILD-TYPE 
          0.56           0.03 
  RPL5 MUTATED RPL5 WILD-TYPE 
        211.17         182.33 
  RPL5 MUTATED RPL5 WILD-TYPE 
         13.86          16.93 
[1] "0.6 - 211.2 (13.9)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1"  
D39V2, continuous
D39V3, binary
                cls
clus               0   1
  RPL5 MUTATED     7   3
  RPL5 WILD-TYPE 271 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  RPL5 MUTATED      7    3
  RPL5 WILD-TYPE  271  509
                        clus
vv                       RPL5 MUTATED RPL5 WILD-TYPE
  BRAIN                             7            271
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D39V4, binary
                cls
clus               0   1
  RPL5 MUTATED     6   4
  RPL5 WILD-TYPE 323 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  RPL5 MUTATED      6    4
  RPL5 WILD-TYPE  323  457
        clus
vv       RPL5 MUTATED RPL5 WILD-TYPE
  FEMALE            6            323
  MALE              4            457
[1] 2 2
[1] FALSE
D39V5, binary
                cls
clus               0   1
  RPL5 MUTATED     0   9
  RPL5 WILD-TYPE 232 499
[1] "tbl2"
                cls
clus             [,1] [,2]
  RPL5 MUTATED      0    9
  RPL5 WILD-TYPE  232  499
     clus
vv    RPL5 MUTATED RPL5 WILD-TYPE
  NO             0            232
  YES            9            499
[1] 2 2
[1] FALSE
D39V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  RPL5 MUTATED             2                             0                1
  RPL5 WILD-TYPE         190                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  RPL5 MUTATED                   0                   0
  RPL5 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  RPL5 MUTATED                                 7
  RPL5 WILD-TYPE                             258
D39V7, multiclass
                                 clus
vv                                RPL5 MUTATED RPL5 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            7            258
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RPL5 MUTATED                                  0     0
  RPL5 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RPL5 MUTATED                           2     8
  RPL5 WILD-TYPE                        36   714
D39V8, multiclass
                                  clus
vv                                 RPL5 MUTATED RPL5 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   2             36
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V9, binary
                cls
clus               0   1
  RPL5 MUTATED     0   9
  RPL5 WILD-TYPE  35 657
[1] "tbl2"
                cls
clus             [,1] [,2]
  RPL5 MUTATED      0    9
  RPL5 WILD-TYPE   35  657
                        clus
vv                       RPL5 MUTATED RPL5 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            9            657
[1] 2 2
[1] FALSE

Clustering(40) Variable = NRAS MUTATION ANALYSIS
D40V1, survival
                sevent
clus2              0   1
  NRAS MUTATED     4   1
  NRAS WILD-TYPE 449 333
  NRAS MUTATED NRAS WILD-TYPE 
             5            782 
  NRAS MUTATED NRAS WILD-TYPE 
             1            333 
$`NRAS MUTATED`
TCGA-12-3649 TCGA-CS-5390 TCGA-S9-A7J0 TCGA-VM-A8CA TCGA-W9-A837 
       15.22        64.64        20.02        13.51        51.06 

$`NRAS WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3650 TCGA-12-3652 
       26.66         3.65        10.62        22.19        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J1 
       36.13         7.92        26.93        23.51        19.99         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       31.36        43.04        43.20         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  NRAS MUTATED NRAS WILD-TYPE 
         13.51           0.03 
  NRAS MUTATED NRAS WILD-TYPE 
         64.64         211.17 
  NRAS MUTATED NRAS WILD-TYPE 
        20.020         16.815 
[1] "13.5 - 64.6 (20.0)" "0.0 - 211.2 (16.8)"
[1] "hr=" "2.9"
D40V2, continuous
D40V3, binary
                cls
clus               0   1
  NRAS MUTATED     1   4
  NRAS WILD-TYPE 277 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      1    4
  NRAS WILD-TYPE  277  508
                        clus
vv                       NRAS MUTATED NRAS WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D40V4, binary
                cls
clus               0   1
  NRAS MUTATED     2   3
  NRAS WILD-TYPE 327 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      2    3
  NRAS WILD-TYPE  327  458
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            2            327
  MALE              3            458
[1] 2 2
[1] FALSE
D40V5, binary
                cls
clus               0   1
  NRAS MUTATED     3   2
  NRAS WILD-TYPE 229 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      3    2
  NRAS WILD-TYPE  229  506
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  NO             3            229
  YES            2            506
[1] 2 2
[1] FALSE
D40V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NRAS MUTATED             0                             0                0
  NRAS WILD-TYPE         192                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NRAS MUTATED                   4                   0
  NRAS WILD-TYPE               186                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  NRAS MUTATED                                 1
  NRAS WILD-TYPE                             264
D40V7, multiclass
                                 clus
vv                                NRAS MUTATED NRAS WILD-TYPE
  ASTROCYTOMA                                0            192
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          4            186
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NRAS MUTATED                                  0     0
  NRAS WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  NRAS MUTATED                           0     4
  NRAS WILD-TYPE                        38   718
D40V8, multiclass
                                  clus
vv                                 NRAS MUTATED NRAS WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       4            718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V9, binary
                cls
clus               0   1
  NRAS MUTATED     0   3
  NRAS WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      0    3
  NRAS WILD-TYPE   35  663
                        clus
vv                       NRAS MUTATED NRAS WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(41) Variable = TPX2 MUTATION ANALYSIS
D41V1, survival
                sevent
clus2              0   1
  TPX2 MUTATED     5   2
  TPX2 WILD-TYPE 448 332
  TPX2 MUTATED TPX2 WILD-TYPE 
             7            780 
  TPX2 MUTATED TPX2 WILD-TYPE 
             2            332 
$`TPX2 MUTATED`
TCGA-06-5415 TCGA-76-6280 TCGA-DU-6392 TCGA-HT-7688 TCGA-S9-A6WL TCGA-TQ-A7RJ 
        8.55        11.38       211.17        31.69        31.10        40.41 
TCGA-TQ-A8XE 
       31.36 

$`TPX2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN 
      135.22        85.55        38.56        84.99        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK 
       23.80        21.37        19.69        15.98         2.04        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       33.93        61.41        26.99        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  TPX2 MUTATED TPX2 WILD-TYPE 
          8.55           0.03 
  TPX2 MUTATED TPX2 WILD-TYPE 
        211.17         182.33 
  TPX2 MUTATED TPX2 WILD-TYPE 
        31.360         16.765 
[1] "8.6 - 211.2 (31.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.8"
D41V2, continuous
D41V3, binary
                cls
clus               0   1
  TPX2 MUTATED     2   5
  TPX2 WILD-TYPE 276 507
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPX2 MUTATED      2    5
  TPX2 WILD-TYPE  276  507
                        clus
vv                       TPX2 MUTATED TPX2 WILD-TYPE
  BRAIN                             2            276
  CENTRAL NERVOUS SYSTEM            5            507
[1] 2 2
[1] FALSE
D41V4, binary
                cls
clus               0   1
  TPX2 MUTATED     3   4
  TPX2 WILD-TYPE 326 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPX2 MUTATED      3    4
  TPX2 WILD-TYPE  326  457
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  FEMALE            3            326
  MALE              4            457
[1] 2 2
[1] FALSE
D41V5, binary
                cls
clus               0   1
  TPX2 MUTATED     2   5
  TPX2 WILD-TYPE 230 503
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPX2 MUTATED      2    5
  TPX2 WILD-TYPE  230  503
     clus
vv    TPX2 MUTATED TPX2 WILD-TYPE
  NO             2            230
  YES            5            503
[1] 2 2
[1] FALSE
D41V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TPX2 MUTATED             2                             0                1
  TPX2 WILD-TYPE         190                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TPX2 MUTATED                   2                   0
  TPX2 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TPX2 MUTATED                                 2
  TPX2 WILD-TYPE                             263
D41V7, multiclass
                                 clus
vv                                TPX2 MUTATED TPX2 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            2            263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TPX2 MUTATED                                  0     0
  TPX2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TPX2 MUTATED                           0     7
  TPX2 WILD-TYPE                        38   715
D41V8, multiclass
                                  clus
vv                                 TPX2 MUTATED TPX2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       7            715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V9, binary
                cls
clus               0   1
  TPX2 MUTATED     2   5
  TPX2 WILD-TYPE  33 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPX2 MUTATED      2    5
  TPX2 WILD-TYPE   33  661
                        clus
vv                       TPX2 MUTATED TPX2 WILD-TYPE
  HISPANIC OR LATINO                2             33
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(42) Variable = EMG1 MUTATION ANALYSIS
D42V1, survival
                sevent
clus2              0   1
  EMG1 MUTATED     5   1
  EMG1 WILD-TYPE 448 333
  EMG1 MUTATED EMG1 WILD-TYPE 
             6            781 
  EMG1 MUTATED EMG1 WILD-TYPE 
             1            333 
$`EMG1 MUTATED`
TCGA-DB-A75K TCGA-DU-7304 TCGA-HT-7485 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-S9-A7IZ 
       12.10        23.31         4.01        16.34        16.73        19.99 

$`EMG1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       29.23        14.40        18.51        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       44.02        62.01        25.91        60.30        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7602 
       75.19        95.93       106.95       172.77         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       10.29        14.53         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       23.51        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  EMG1 MUTATED EMG1 WILD-TYPE 
          4.01           0.03 
  EMG1 MUTATED EMG1 WILD-TYPE 
         23.31         211.17 
  EMG1 MUTATED EMG1 WILD-TYPE 
        16.535         16.830 
[1] "4.0 - 23.3 (16.5)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.8"
D42V2, continuous
D42V3, binary
                cls
clus               0   1
  EMG1 MUTATED     0   6
  EMG1 WILD-TYPE 278 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  EMG1 MUTATED      0    6
  EMG1 WILD-TYPE  278  506
                        clus
vv                       EMG1 MUTATED EMG1 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            6            506
[1] 2 2
[1] FALSE
D42V4, binary
                cls
clus               0   1
  EMG1 MUTATED     4   2
  EMG1 WILD-TYPE 325 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  EMG1 MUTATED      4    2
  EMG1 WILD-TYPE  325  459
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  FEMALE            4            325
  MALE              2            459
[1] 2 2
[1] FALSE
D42V5, binary
                cls
clus               0   1
  EMG1 MUTATED     2   4
  EMG1 WILD-TYPE 230 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  EMG1 MUTATED      2    4
  EMG1 WILD-TYPE  230  504
     clus
vv    EMG1 MUTATED EMG1 WILD-TYPE
  NO             2            230
  YES            4            504
[1] 2 2
[1] FALSE
D42V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  EMG1 MUTATED             2                             0                3
  EMG1 WILD-TYPE         190                             9              127
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  EMG1 MUTATED                   1                   0
  EMG1 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  EMG1 MUTATED                                 0
  EMG1 WILD-TYPE                             265
D42V7, multiclass
                                 clus
vv                                EMG1 MUTATED EMG1 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           3            127
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  EMG1 MUTATED                                  0     0
  EMG1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  EMG1 MUTATED                           0     6
  EMG1 WILD-TYPE                        38   716
D42V8, multiclass
                                  clus
vv                                 EMG1 MUTATED EMG1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V9, binary
                cls
clus               0   1
  EMG1 MUTATED     0   6
  EMG1 WILD-TYPE  35 660
[1] "tbl2"
                cls
clus             [,1] [,2]
  EMG1 MUTATED      0    6
  EMG1 WILD-TYPE   35  660
                        clus
vv                       EMG1 MUTATED EMG1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            6            660
[1] 2 2
[1] FALSE

Clustering(43) Variable = BRAF MUTATION ANALYSIS
D43V1, survival
                sevent
clus2              0   1
  BRAF MUTATED     5   6
  BRAF WILD-TYPE 448 328
  BRAF MUTATED BRAF WILD-TYPE 
            11            776 
  BRAF MUTATED BRAF WILD-TYPE 
             6            328 
$`BRAF MUTATED`
TCGA-02-0047 TCGA-06-0151 TCGA-06-0185 TCGA-06-0644 TCGA-06-1806 TCGA-76-4928 
       14.73        46.59        73.84        12.62        15.32         3.09 
TCGA-DB-A75P TCGA-DU-6392 TCGA-DU-6402 TCGA-HT-8015 TCGA-P5-A5EY 
       16.18       211.17         7.04         0.10         2.37 

$`BRAF WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.29         2.20         2.33        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0188 
        3.29         4.47         3.22        88.14        69.90        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       20.78        26.76        13.61         1.08        12.49         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
       17.65        12.56        30.64         5.95        16.64         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.74         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         5.10         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42        13.78        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 
       14.33         7.50         4.80         4.54        17.59         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 
       75.16        46.06        65.75         1.22        87.45        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 
        1.64        16.24         9.40        63.55        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        6.71         7.99         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  BRAF MUTATED BRAF WILD-TYPE 
          0.10           0.03 
  BRAF MUTATED BRAF WILD-TYPE 
        211.17         182.33 
  BRAF MUTATED BRAF WILD-TYPE 
         14.73          16.93 
[1] "0.1 - 211.2 (14.7)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1"  
D43V2, continuous
D43V3, binary
                cls
clus               0   1
  BRAF MUTATED     6   5
  BRAF WILD-TYPE 272 507
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    5
  BRAF WILD-TYPE  272  507
                        clus
vv                       BRAF MUTATED BRAF WILD-TYPE
  BRAIN                             6            272
  CENTRAL NERVOUS SYSTEM            5            507
[1] 2 2
[1] FALSE
D43V4, binary
                cls
clus               0   1
  BRAF MUTATED     4   7
  BRAF WILD-TYPE 325 454
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      4    7
  BRAF WILD-TYPE  325  454
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            4            325
  MALE              7            454
[1] 2 2
[1] FALSE
D43V5, binary
                cls
clus               0   1
  BRAF MUTATED     1   8
  BRAF WILD-TYPE 231 500
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      1    8
  BRAF WILD-TYPE  231  500
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             1            231
  YES            8            500
[1] 2 2
[1] FALSE
D43V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  BRAF MUTATED             5                             2                0
  BRAF WILD-TYPE         187                             7              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  BRAF MUTATED                   0                   0
  BRAF WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  BRAF MUTATED                                 4
  BRAF WILD-TYPE                             261
D43V7, multiclass
                                 clus
vv                                BRAF MUTATED BRAF WILD-TYPE
  ASTROCYTOMA                                5            187
  GLIOBLASTOMA MULTIFORME (GBM)              2              7
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  BRAF MUTATED                                  0     0
  BRAF WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  BRAF MUTATED                           1     9
  BRAF WILD-TYPE                        37   713
D43V8, multiclass
                                  clus
vv                                 BRAF MUTATED BRAF WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   1             37
  WHITE                                       9            713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V9, binary
                cls
clus               0   1
  BRAF MUTATED     0   9
  BRAF WILD-TYPE  35 657
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      0    9
  BRAF WILD-TYPE   35  657
                        clus
vv                       BRAF MUTATED BRAF WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            9            657
[1] 2 2
[1] FALSE

Clustering(44) Variable = MX2 MUTATION ANALYSIS
D44V1, survival
               sevent
clus2             0   1
  MX2 MUTATED     4   5
  MX2 WILD-TYPE 449 329
  MX2 MUTATED MX2 WILD-TYPE 
            9           778 
  MX2 MUTATED MX2 WILD-TYPE 
            5           329 
$`MX2 MUTATED`
TCGA-02-2470 TCGA-06-0192 TCGA-06-0876 TCGA-12-0615 TCGA-19-5958 TCGA-DH-A66D 
       12.92        38.96        46.19        15.35        14.07        27.81 
TCGA-HT-7616 TCGA-P5-A72U TCGA-S9-A6WL 
        0.23         0.23        31.10 

$`MX2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83        14.73         2.50        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       73.84        44.58        15.42         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0616 
        4.77         1.55         4.77         4.96        18.02        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
        1.78        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A66G 
       46.06         8.02        30.21        42.05        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  MX2 MUTATED MX2 WILD-TYPE 
         0.23          0.03 
  MX2 MUTATED MX2 WILD-TYPE 
        46.19        211.17 
  MX2 MUTATED MX2 WILD-TYPE 
        15.35         16.83 
[1] "0.2 - 46.2 (15.3)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.5"
D44V2, continuous
D44V3, binary
               cls
clus              0   1
  MX2 MUTATED     5   4
  MX2 WILD-TYPE 273 508
[1] "tbl2"
               cls
clus            [,1] [,2]
  MX2 MUTATED      5    4
  MX2 WILD-TYPE  273  508
                        clus
vv                       MX2 MUTATED MX2 WILD-TYPE
  BRAIN                            5           273
  CENTRAL NERVOUS SYSTEM           4           508
[1] 2 2
[1] FALSE
D44V4, binary
               cls
clus              0   1
  MX2 MUTATED     4   5
  MX2 WILD-TYPE 325 456
[1] "tbl2"
               cls
clus            [,1] [,2]
  MX2 MUTATED      4    5
  MX2 WILD-TYPE  325  456
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  FEMALE           4           325
  MALE             5           456
[1] 2 2
[1] FALSE
D44V5, binary
               cls
clus              0   1
  MX2 MUTATED     3   6
  MX2 WILD-TYPE 229 502
[1] "tbl2"
               cls
clus            [,1] [,2]
  MX2 MUTATED      3    6
  MX2 WILD-TYPE  229  502
     clus
vv    MX2 MUTATED MX2 WILD-TYPE
  NO            3           229
  YES           6           502
[1] 2 2
[1] FALSE
D44V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MX2 MUTATED             2                             0                0
  MX2 WILD-TYPE         190                             9              130
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MX2 MUTATED                   2                   1
  MX2 WILD-TYPE               188                   3
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  MX2 MUTATED                                 4
  MX2 WILD-TYPE                             261
D44V7, multiclass
                                 clus
vv                                MX2 MUTATED MX2 WILD-TYPE
  ASTROCYTOMA                               2           190
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          0           130
  OLIGODENDROGLIOMA                         2           188
  TREATED PRIMARY GBM                       1             3
  UNTREATED PRIMARY (DE NOVO) GBM           4           261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MX2 MUTATED                                  0     0
  MX2 WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  MX2 MUTATED                           1     8
  MX2 WILD-TYPE                        37   714
D44V8, multiclass
                                  clus
vv                                 MX2 MUTATED MX2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  1            37
  WHITE                                      8           714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V9, binary
               cls
clus              0   1
  MX2 MUTATED     0   9
  MX2 WILD-TYPE  35 657
[1] "tbl2"
               cls
clus            [,1] [,2]
  MX2 MUTATED      0    9
  MX2 WILD-TYPE   35  657
                        clus
vv                       MX2 MUTATED MX2 WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO           9           657
[1] 2 2
[1] FALSE

Clustering(45) Variable = FAM47C MUTATION ANALYSIS
D45V1, survival
                  sevent
clus2                0   1
  FAM47C MUTATED    17   6
  FAM47C WILD-TYPE 436 328
  FAM47C MUTATED FAM47C WILD-TYPE 
              23              764 
  FAM47C MUTATED FAM47C WILD-TYPE 
               6              328 
$`FAM47C MUTATED`
TCGA-06-6694 TCGA-12-1597 TCGA-14-0790 TCGA-32-4719 TCGA-74-6577 TCGA-DH-A66F 
        7.36        22.19        13.78        10.85         4.34        17.19 
TCGA-DH-A66G TCGA-DU-6392 TCGA-FG-7636 TCGA-FG-7643 TCGA-FG-8186 TCGA-HT-7470 
       17.19       211.17        17.88        20.09        16.01        40.11 
TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7610 TCGA-IK-8125 TCGA-P5-A731 TCGA-QH-A6CS 
        0.13        75.19        56.09        42.77         9.01        19.33 
TCGA-RY-A845 TCGA-S9-A6WE TCGA-S9-A7J3 TCGA-S9-A7R2 TCGA-WY-A859 
       19.59       135.22        20.68        10.39        39.88 

$`FAM47C WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
        3.65        10.62        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
        2.24        11.24         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 
       21.14        20.32         3.72        12.59        19.86        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A7UR 
       46.06         8.02        30.21        42.05        27.81        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       41.33        18.44        15.35        40.08        22.55        20.61 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       28.34        13.68        14.24        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7472 
        5.72        27.52         0.10         6.67        11.54         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       40.34        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       22.06        45.99        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.81        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       11.64        10.95        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       12.62        15.85        14.04        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
        9.90        28.08         2.07        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
        5.85       123.65        75.25        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        8.19         2.04        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
      169.84        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       51.06        13.32        43.96        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  FAM47C MUTATED FAM47C WILD-TYPE 
            0.13             0.03 
  FAM47C MUTATED FAM47C WILD-TYPE 
          211.17           182.33 
  FAM47C MUTATED FAM47C WILD-TYPE 
           19.33            16.67 
[1] "0.1 - 211.2 (19.3)" "0.0 - 182.3 (16.7)"
[1] "hr=" "2.2"
D45V2, continuous
D45V3, binary
                  cls
clus                 0   1
  FAM47C MUTATED     5  18
  FAM47C WILD-TYPE 273 494
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47C MUTATED      5   18
  FAM47C WILD-TYPE  273  494
                        clus
vv                       FAM47C MUTATED FAM47C WILD-TYPE
  BRAIN                               5              273
  CENTRAL NERVOUS SYSTEM             18              494
[1] 2 2
[1] FALSE
D45V4, binary
                  cls
clus                 0   1
  FAM47C MUTATED    13  10
  FAM47C WILD-TYPE 316 451
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47C MUTATED     13   10
  FAM47C WILD-TYPE  316  451
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  FEMALE             13              316
  MALE               10              451
[1] 2 2
[1] FALSE
D45V5, binary
                  cls
clus                 0   1
  FAM47C MUTATED     5  16
  FAM47C WILD-TYPE 227 492
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47C MUTATED      5   16
  FAM47C WILD-TYPE  227  492
     clus
vv    FAM47C MUTATED FAM47C WILD-TYPE
  NO               5              227
  YES             16              492
[1] 2 2
[1] FALSE
D45V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FAM47C MUTATED             5                             0                6
  FAM47C WILD-TYPE         187                             9              124
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FAM47C MUTATED                   7                   0
  FAM47C WILD-TYPE               183                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  FAM47C MUTATED                                 5
  FAM47C WILD-TYPE                             260
D45V7, multiclass
                                 clus
vv                                FAM47C MUTATED FAM47C WILD-TYPE
  ASTROCYTOMA                                  5              187
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             6              124
  OLIGODENDROGLIOMA                            7              183
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              5              260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FAM47C MUTATED                                  0     0
  FAM47C WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  FAM47C MUTATED                           0    22
  FAM47C WILD-TYPE                        38   700
D45V8, multiclass
                                  clus
vv                                 FAM47C MUTATED FAM47C WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        22              700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V9, binary
                  cls
clus                 0   1
  FAM47C MUTATED     1  19
  FAM47C WILD-TYPE  34 647
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47C MUTATED      1   19
  FAM47C WILD-TYPE   34  647
                        clus
vv                       FAM47C MUTATED FAM47C WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO             19              647
[1] 2 2
[1] FALSE

Clustering(46) Variable = TRERF1 MUTATION ANALYSIS
D46V1, survival
                  sevent
clus2                0   1
  TRERF1 MUTATED     4   3
  TRERF1 WILD-TYPE 449 331
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               7              780 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               3              331 
$`TRERF1 MUTATED`
TCGA-41-6646 TCGA-CS-4938 TCGA-DU-6392 TCGA-E1-5307 TCGA-HT-7902 TCGA-S9-A6WN 
       12.46         4.70       211.17        57.93        31.43        26.47 
TCGA-TM-A84L 
       40.83 

$`TRERF1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       15.12         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
       26.30         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8010 TCGA-HT-8011 
        5.33        35.47         3.72        11.28         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WO 
       85.55        38.56        84.99        31.10        19.86        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84M 
       59.05        40.64        30.44        28.08        24.16        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  TRERF1 MUTATED TRERF1 WILD-TYPE 
            4.70             0.03 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
          211.17           182.33 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
          31.430           16.765 
[1] "4.7 - 211.2 (31.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.9"
D46V2, continuous
D46V3, binary
                  cls
clus                 0   1
  TRERF1 MUTATED     1   6
  TRERF1 WILD-TYPE 277 506
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRERF1 MUTATED      1    6
  TRERF1 WILD-TYPE  277  506
                        clus
vv                       TRERF1 MUTATED TRERF1 WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM              6              506
[1] 2 2
[1] FALSE
D46V4, binary
                  cls
clus                 0   1
  TRERF1 MUTATED     6   1
  TRERF1 WILD-TYPE 323 460
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRERF1 MUTATED      6    1
  TRERF1 WILD-TYPE  323  460
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  FEMALE              6              323
  MALE                1              460
[1] 2 2
[1] FALSE
D46V5, binary
                  cls
clus                 0   1
  TRERF1 MUTATED     3   4
  TRERF1 WILD-TYPE 229 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRERF1 MUTATED      3    4
  TRERF1 WILD-TYPE  229  504
     clus
vv    TRERF1 MUTATED TRERF1 WILD-TYPE
  NO               3              229
  YES              4              504
[1] 2 2
[1] FALSE
D46V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TRERF1 MUTATED             4                             0                2
  TRERF1 WILD-TYPE         188                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TRERF1 MUTATED                   0                   0
  TRERF1 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  TRERF1 MUTATED                                 1
  TRERF1 WILD-TYPE                             264
D46V7, multiclass
                                 clus
vv                                TRERF1 MUTATED TRERF1 WILD-TYPE
  ASTROCYTOMA                                  4              188
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TRERF1 MUTATED                                  0     0
  TRERF1 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  TRERF1 MUTATED                           0     7
  TRERF1 WILD-TYPE                        38   715
D46V8, multiclass
                                  clus
vv                                 TRERF1 MUTATED TRERF1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         7              715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V9, binary
                  cls
clus                 0   1
  TRERF1 MUTATED     0   7
  TRERF1 WILD-TYPE  35 659
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRERF1 MUTATED      0    7
  TRERF1 WILD-TYPE   35  659
                        clus
vv                       TRERF1 MUTATED TRERF1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              7              659
[1] 2 2
[1] FALSE

Clustering(47) Variable = MYST4 MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2               0   1
  MYST4 MUTATED    10   2
  MYST4 WILD-TYPE 443 332
  MYST4 MUTATED MYST4 WILD-TYPE 
             12             775 
  MYST4 MUTATED MYST4 WILD-TYPE 
              2             332 
$`MYST4 MUTATED`
TCGA-14-0740 TCGA-CS-5396 TCGA-DU-6392 TCGA-DU-7302 TCGA-DU-A5TW TCGA-FG-6692 
       11.97         9.96       211.17        60.30        24.99        18.44 
TCGA-HT-8105 TCGA-HW-A5KJ TCGA-QH-A65Z TCGA-QH-A6X5 TCGA-S9-A6WE TCGA-TQ-A7RH 
        6.25        10.55        14.04        16.34       135.22        15.98 

$`MYST4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 
       34.92        14.53        14.93         3.22         2.04         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 
       64.64        40.18         0.10        21.01         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       25.91        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        42.54        41.33        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A6CS 
        4.41        15.16         2.53        12.62        15.85        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       23.80        21.37        19.69         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  MYST4 MUTATED MYST4 WILD-TYPE 
           6.25            0.03 
  MYST4 MUTATED MYST4 WILD-TYPE 
         211.17          182.33 
  MYST4 MUTATED MYST4 WILD-TYPE 
          16.16           16.83 
[1] "6.2 - 211.2 (16.2)" "0.0 - 182.3 (16.8)"
[1] "hr=" "4"  
D47V2, continuous
D47V3, binary
                 cls
clus                0   1
  MYST4 MUTATED     1  11
  MYST4 WILD-TYPE 277 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYST4 MUTATED      1   11
  MYST4 WILD-TYPE  277  501
                        clus
vv                       MYST4 MUTATED MYST4 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM            11             501
[1] 2 2
[1] FALSE
D47V4, binary
                 cls
clus                0   1
  MYST4 MUTATED     5   7
  MYST4 WILD-TYPE 324 454
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYST4 MUTATED      5    7
  MYST4 WILD-TYPE  324  454
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  FEMALE             5             324
  MALE               7             454
[1] 2 2
[1] FALSE
D47V5, binary
                 cls
clus                0   1
  MYST4 MUTATED     4   8
  MYST4 WILD-TYPE 228 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYST4 MUTATED      4    8
  MYST4 WILD-TYPE  228  500
     clus
vv    MYST4 MUTATED MYST4 WILD-TYPE
  NO              4             228
  YES             8             500
[1] 2 2
[1] FALSE
D47V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MYST4 MUTATED             2                             0                2
  MYST4 WILD-TYPE         190                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MYST4 MUTATED                   7                   0
  MYST4 WILD-TYPE               183                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  MYST4 MUTATED                                 1
  MYST4 WILD-TYPE                             264
D47V7, multiclass
                                 clus
vv                                MYST4 MUTATED MYST4 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           7             183
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYST4 MUTATED                                  0     0
  MYST4 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MYST4 MUTATED                           2    10
  MYST4 WILD-TYPE                        36   712
D47V8, multiclass
                                  clus
vv                                 MYST4 MUTATED MYST4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    2              36
  WHITE                                       10             712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V9, binary
                 cls
clus                0   1
  MYST4 MUTATED     1   9
  MYST4 WILD-TYPE  34 657
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYST4 MUTATED      1    9
  MYST4 WILD-TYPE   34  657
                        clus
vv                       MYST4 MUTATED MYST4 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             9             657
[1] 2 2
[1] FALSE

Clustering(48) Variable = SRPX MUTATION ANALYSIS
D48V1, survival
                sevent
clus2              0   1
  SRPX MUTATED     1   3
  SRPX WILD-TYPE 452 331
  SRPX MUTATED SRPX WILD-TYPE 
             4            783 
  SRPX MUTATED SRPX WILD-TYPE 
             3            331 
$`SRPX MUTATED`
TCGA-DH-5144 TCGA-DU-7006 TCGA-E1-5319 TCGA-E1-A7YQ 
        8.02        11.47        95.57        51.88 

$`SRPX WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
      114.08         7.96         2.40        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5322 TCGA-E1-A7YD 
       79.99        57.93       134.27        78.21       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       21.30        23.90        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  SRPX MUTATED SRPX WILD-TYPE 
          8.02           0.03 
  SRPX MUTATED SRPX WILD-TYPE 
         95.57         211.17 
  SRPX MUTATED SRPX WILD-TYPE 
        31.675         16.830 
[1] "8.0 - 95.6 (31.7)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.2"
D48V2, continuous
D48V3, binary
                cls
clus               0   1
  SRPX MUTATED     0   4
  SRPX WILD-TYPE 278 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  SRPX MUTATED      0    4
  SRPX WILD-TYPE  278  508
                        clus
vv                       SRPX MUTATED SRPX WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D48V4, binary
                cls
clus               0   1
  SRPX MUTATED     4   0
  SRPX WILD-TYPE 325 461
[1] "tbl2"
                cls
clus             [,1] [,2]
  SRPX MUTATED      4    0
  SRPX WILD-TYPE  325  461
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  FEMALE            4            325
  MALE              0            461
[1] 2 2
[1] FALSE
D48V5, binary
                cls
clus               0   1
  SRPX MUTATED     1   2
  SRPX WILD-TYPE 231 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  SRPX MUTATED      1    2
  SRPX WILD-TYPE  231  506
     clus
vv    SRPX MUTATED SRPX WILD-TYPE
  NO             1            231
  YES            2            506
[1] 2 2
[1] FALSE
D48V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SRPX MUTATED             1                             0                0
  SRPX WILD-TYPE         191                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SRPX MUTATED                   3                   0
  SRPX WILD-TYPE               187                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  SRPX MUTATED                                 0
  SRPX WILD-TYPE                             265
D48V7, multiclass
                                 clus
vv                                SRPX MUTATED SRPX WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          3            187
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SRPX MUTATED                                  0     0
  SRPX WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  SRPX MUTATED                           1     3
  SRPX WILD-TYPE                        37   719
D48V8, multiclass
                                  clus
vv                                 SRPX MUTATED SRPX WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   1             37
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V9, binary
                cls
clus               0   1
  SRPX MUTATED     0   4
  SRPX WILD-TYPE  35 662
[1] "tbl2"
                cls
clus             [,1] [,2]
  SRPX MUTATED      0    4
  SRPX WILD-TYPE   35  662
                        clus
vv                       SRPX MUTATED SRPX WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            4            662
[1] 2 2
[1] FALSE

Clustering(49) Variable = SETD2 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2               0   1
  SETD2 MUTATED     8   5
  SETD2 WILD-TYPE 445 329
  SETD2 MUTATED SETD2 WILD-TYPE 
             13             774 
  SETD2 MUTATED SETD2 WILD-TYPE 
              5             329 
$`SETD2 MUTATED`
TCGA-26-5134 TCGA-28-5208 TCGA-28-5216 TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-6392 
        5.49        17.88        13.64        19.96        30.21       211.17 
TCGA-DU-8164 TCGA-E1-A7YK TCGA-E1-A7YM TCGA-FG-6688 TCGA-FG-A6J3 TCGA-HT-7684 
       21.40        12.43        21.30        18.77        22.26         6.05 
TCGA-HT-A74H 
        2.43 

$`SETD2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       11.28         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 
       12.10        11.24        17.88        30.74        16.18        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       63.88        46.06         8.02        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YL TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       16.18        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       52.21        36.82        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
       44.68        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74J TCGA-HT-A74K 
       21.40         6.38        17.52        17.65        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  SETD2 MUTATED SETD2 WILD-TYPE 
           2.43            0.03 
  SETD2 MUTATED SETD2 WILD-TYPE 
         211.17          182.33 
  SETD2 MUTATED SETD2 WILD-TYPE 
         18.770          16.765 
[1] "2.4 - 211.2 (18.8)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
                 cls
clus                0   1
  SETD2 MUTATED     3  10
  SETD2 WILD-TYPE 275 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      3   10
  SETD2 WILD-TYPE  275  502
                        clus
vv                       SETD2 MUTATED SETD2 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM            10             502
[1] 2 2
[1] FALSE
D49V4, binary
                 cls
clus                0   1
  SETD2 MUTATED     4   9
  SETD2 WILD-TYPE 325 452
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      4    9
  SETD2 WILD-TYPE  325  452
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  FEMALE             4             325
  MALE               9             452
[1] 2 2
[1] FALSE
D49V5, binary
                 cls
clus                0   1
  SETD2 MUTATED     3  10
  SETD2 WILD-TYPE 229 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      3   10
  SETD2 WILD-TYPE  229  498
     clus
vv    SETD2 MUTATED SETD2 WILD-TYPE
  NO              3             229
  YES            10             498
[1] 2 2
[1] FALSE
D49V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SETD2 MUTATED             6                             0                2
  SETD2 WILD-TYPE         186                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SETD2 MUTATED                   2                   0
  SETD2 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  SETD2 MUTATED                                 3
  SETD2 WILD-TYPE                             262
D49V7, multiclass
                                 clus
vv                                SETD2 MUTATED SETD2 WILD-TYPE
  ASTROCYTOMA                                 6             186
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SETD2 MUTATED                                  0     0
  SETD2 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  SETD2 MUTATED                           1    12
  SETD2 WILD-TYPE                        37   710
D49V8, multiclass
                                  clus
vv                                 SETD2 MUTATED SETD2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                       12             710
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V9, binary
                 cls
clus                0   1
  SETD2 MUTATED     0  11
  SETD2 WILD-TYPE  35 655
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      0   11
  SETD2 WILD-TYPE   35  655
                        clus
vv                       SETD2 MUTATED SETD2 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            11             655
[1] 2 2
[1] FALSE

Clustering(50) Variable = TNRC18 MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2                0   1
  TNRC18 MUTATED     7   4
  TNRC18 WILD-TYPE 446 330
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              11              776 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               4              330 
$`TNRC18 MUTATED`
TCGA-06-0749 TCGA-26-1442 TCGA-DB-A4XC TCGA-DB-A64W TCGA-DU-6392 TCGA-E1-5305 
        2.70        31.33        46.72        14.40       211.17        79.99 
TCGA-HT-8011 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A89V TCGA-TM-A84R 
       16.24        98.24        95.93        18.71        18.61 

$`TNRC18 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       14.96        13.87         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       46.42        18.84        30.21        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K 
       31.40        27.45        27.81        29.23        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        41.13        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 
        3.72        11.28        31.43         1.64         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6UA TCGA-S9-A6UB 
       25.81        29.85        32.61        35.15         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84S 
       24.16        40.83        24.79        33.24        25.38        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  TNRC18 MUTATED TNRC18 WILD-TYPE 
            2.70             0.03 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
          211.17           182.33 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
          31.330           16.715 
[1] "2.7 - 211.2 (31.3)" "0.0 - 182.3 (16.7)"
[1] "hr=" "2.4"
D50V2, continuous
D50V3, binary
                  cls
clus                 0   1
  TNRC18 MUTATED     2   9
  TNRC18 WILD-TYPE 276 503
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNRC18 MUTATED      2    9
  TNRC18 WILD-TYPE  276  503
                        clus
vv                       TNRC18 MUTATED TNRC18 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              9              503
[1] 2 2
[1] FALSE
D50V4, binary
                  cls
clus                 0   1
  TNRC18 MUTATED     2   9
  TNRC18 WILD-TYPE 327 452
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNRC18 MUTATED      2    9
  TNRC18 WILD-TYPE  327  452
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  FEMALE              2              327
  MALE                9              452
[1] 2 2
[1] FALSE
D50V5, binary
                  cls
clus                 0   1
  TNRC18 MUTATED     2   9
  TNRC18 WILD-TYPE 230 499
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNRC18 MUTATED      2    9
  TNRC18 WILD-TYPE  230  499
     clus
vv    TNRC18 MUTATED TNRC18 WILD-TYPE
  NO               2              230
  YES              9              499
[1] 2 2
[1] FALSE
D50V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TNRC18 MUTATED             6                             0                2
  TNRC18 WILD-TYPE         186                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TNRC18 MUTATED                   1                   0
  TNRC18 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  TNRC18 MUTATED                                 2
  TNRC18 WILD-TYPE                             263
D50V7, multiclass
                                 clus
vv                                TNRC18 MUTATED TNRC18 WILD-TYPE
  ASTROCYTOMA                                  6              186
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TNRC18 MUTATED                                  0     0
  TNRC18 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  TNRC18 MUTATED                           1    10
  TNRC18 WILD-TYPE                        37   712
D50V8, multiclass
                                  clus
vv                                 TNRC18 MUTATED TNRC18 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                        10              712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V9, binary
                  cls
clus                 0   1
  TNRC18 MUTATED     0  11
  TNRC18 WILD-TYPE  35 655
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNRC18 MUTATED      0   11
  TNRC18 WILD-TYPE   35  655
                        clus
vv                       TNRC18 MUTATED TNRC18 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO             11              655
[1] 2 2
[1] FALSE

Clustering(51) Variable = SLC6A3 MUTATION ANALYSIS
D51V1, survival
                  sevent
clus2                0   1
  SLC6A3 MUTATED     7   5
  SLC6A3 WILD-TYPE 446 329
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
              12              775 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               5              329 
$`SLC6A3 MUTATED`
TCGA-06-0145 TCGA-28-1747 TCGA-76-4934 TCGA-DB-A4XD TCGA-DU-6392 TCGA-DU-6400 
        2.33         2.53         2.53        39.78       211.17         1.22 
TCGA-HT-7471 TCGA-HT-7855 TCGA-HT-7882 TCGA-HT-8105 TCGA-HW-A5KL TCGA-WY-A85E 
        0.13        19.23         3.72         6.25        20.81        20.81 

$`SLC6A3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        0.20        10.29         2.20        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1753 TCGA-28-2499 
        7.59         2.86        14.40        15.78         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       18.84        30.21        46.72        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 
       27.52         0.10         6.67        11.54        40.11         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 
        2.96        17.52         6.90        14.53        39.48        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 
        0.13         3.68         5.33        35.47        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KM 
       40.01        42.54         6.18        10.55        12.76        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D 
       37.71 

  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
            0.13             0.03 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
          211.17           182.33 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
           4.985           16.830 
[1] "0.1 - 211.2 (5.0)"  "0.0 - 182.3 (16.8)"
[1] "hr=" "1"  
D51V2, continuous
D51V3, binary
                  cls
clus                 0   1
  SLC6A3 MUTATED     3   9
  SLC6A3 WILD-TYPE 275 503
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A3 MUTATED      3    9
  SLC6A3 WILD-TYPE  275  503
                        clus
vv                       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  BRAIN                               3              275
  CENTRAL NERVOUS SYSTEM              9              503
[1] 2 2
[1] FALSE
D51V4, binary
                  cls
clus                 0   1
  SLC6A3 MUTATED     7   5
  SLC6A3 WILD-TYPE 322 456
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A3 MUTATED      7    5
  SLC6A3 WILD-TYPE  322  456
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  FEMALE              7              322
  MALE                5              456
[1] 2 2
[1] FALSE
D51V5, binary
                  cls
clus                 0   1
  SLC6A3 MUTATED     5   6
  SLC6A3 WILD-TYPE 227 502
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A3 MUTATED      5    6
  SLC6A3 WILD-TYPE  227  502
     clus
vv    SLC6A3 MUTATED SLC6A3 WILD-TYPE
  NO               5              227
  YES              6              502
[1] 2 2
[1] FALSE
D51V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SLC6A3 MUTATED             4                             0                1
  SLC6A3 WILD-TYPE         188                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SLC6A3 MUTATED                   4                   0
  SLC6A3 WILD-TYPE               186                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  SLC6A3 MUTATED                                 3
  SLC6A3 WILD-TYPE                             262
D51V7, multiclass
                                 clus
vv                                SLC6A3 MUTATED SLC6A3 WILD-TYPE
  ASTROCYTOMA                                  4              188
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            4              186
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              3              262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SLC6A3 MUTATED                                  0     0
  SLC6A3 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  SLC6A3 MUTATED                           0    12
  SLC6A3 WILD-TYPE                        38   710
D51V8, multiclass
                                  clus
vv                                 SLC6A3 MUTATED SLC6A3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        12              710
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V9, binary
                  cls
clus                 0   1
  SLC6A3 MUTATED     1   8
  SLC6A3 WILD-TYPE  34 658
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A3 MUTATED      1    8
  SLC6A3 WILD-TYPE   34  658
                        clus
vv                       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              8              658
[1] 2 2
[1] FALSE

Clustering(52) Variable = DSP MUTATION ANALYSIS
D52V1, survival
               sevent
clus2             0   1
  DSP MUTATED    13   6
  DSP WILD-TYPE 440 328
  DSP MUTATED DSP WILD-TYPE 
           19           768 
  DSP MUTATED DSP WILD-TYPE 
            6           328 
$`DSP MUTATED`
TCGA-06-0214 TCGA-06-2567 TCGA-06-6697 TCGA-19-5951 TCGA-27-2527 TCGA-32-2491 
       15.02         4.37        12.85         8.02        14.40        12.23 
TCGA-41-2573 TCGA-74-6575 TCGA-74-6584 TCGA-87-5896 TCGA-CS-6188 TCGA-DU-6392 
        8.94        20.91         7.50        26.30        23.84       211.17 
TCGA-DU-6405 TCGA-FG-A4MT TCGA-P5-A731 TCGA-QH-A6X8 TCGA-R8-A6MK TCGA-TQ-A7RP 
       19.89        38.27         9.01        16.73        88.83        30.05 
TCGA-WH-A86K 
       13.32 

$`DSP WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        7.63         0.53        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
       30.64         5.95        16.64         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        4.50         6.64        17.19        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 
       18.08        10.39        16.08         7.59         2.86        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        16.93        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-76-4925 TCGA-76-4926 
       12.46         3.45         4.34        14.33         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-CS-4938 TCGA-CS-4941 
       18.64        36.20         1.61        17.72         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6290 TCGA-CS-6665 
       21.01         9.96         6.38        17.69        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04        11.64       133.74        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MU 
       16.01        20.09        14.96        22.52        32.61        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A733 TCGA-P5-A735 
       10.42        13.25        11.64        10.95        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.34         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       11.08        12.99        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       44.09        36.69        33.73        31.20        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 
       37.05        16.01        23.21         8.05        51.06        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  DSP MUTATED DSP WILD-TYPE 
         4.37          0.03 
  DSP MUTATED DSP WILD-TYPE 
       211.17        182.33 
  DSP MUTATED DSP WILD-TYPE 
        15.02         16.88 
[1] "4.4 - 211.2 (15.0)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.6"
D52V2, continuous
D52V3, binary
               cls
clus              0   1
  DSP MUTATED    10   9
  DSP WILD-TYPE 268 503
[1] "tbl2"
               cls
clus            [,1] [,2]
  DSP MUTATED     10    9
  DSP WILD-TYPE  268  503
                        clus
vv                       DSP MUTATED DSP WILD-TYPE
  BRAIN                           10           268
  CENTRAL NERVOUS SYSTEM           9           503
[1] 2 2
[1] FALSE
D52V4, binary
               cls
clus              0   1
  DSP MUTATED     9  10
  DSP WILD-TYPE 320 451
[1] "tbl2"
               cls
clus            [,1] [,2]
  DSP MUTATED      9   10
  DSP WILD-TYPE  320  451
        clus
vv       DSP MUTATED DSP WILD-TYPE
  FEMALE           9           320
  MALE            10           451
[1] 2 2
[1] FALSE
D52V5, binary
               cls
clus              0   1
  DSP MUTATED     4  15
  DSP WILD-TYPE 228 493
[1] "tbl2"
               cls
clus            [,1] [,2]
  DSP MUTATED      4   15
  DSP WILD-TYPE  228  493
     clus
vv    DSP MUTATED DSP WILD-TYPE
  NO            4           228
  YES          15           493
[1] 2 2
[1] FALSE
D52V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  DSP MUTATED             4                             0                2
  DSP WILD-TYPE         188                             9              128
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  DSP MUTATED                   3                   0
  DSP WILD-TYPE               187                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  DSP MUTATED                                10
  DSP WILD-TYPE                             255
D52V7, multiclass
                                 clus
vv                                DSP MUTATED DSP WILD-TYPE
  ASTROCYTOMA                               4           188
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          2           128
  OLIGODENDROGLIOMA                         3           187
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          10           255
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DSP MUTATED                                  0     0
  DSP WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  DSP MUTATED                           1    16
  DSP WILD-TYPE                        37   706
D52V8, multiclass
                                  clus
vv                                 DSP MUTATED DSP WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  1            37
  WHITE                                     16           706
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V9, binary
               cls
clus              0   1
  DSP MUTATED     1  16
  DSP WILD-TYPE  34 650
[1] "tbl2"
               cls
clus            [,1] [,2]
  DSP MUTATED      1   16
  DSP WILD-TYPE   34  650
                        clus
vv                       DSP MUTATED DSP WILD-TYPE
  HISPANIC OR LATINO               1            34
  NOT HISPANIC OR LATINO          16           650
[1] 2 2
[1] FALSE

Clustering(53) Variable = ZNF292 MUTATION ANALYSIS
D53V1, survival
                  sevent
clus2                0   1
  ZNF292 MUTATED     9   8
  ZNF292 WILD-TYPE 444 326
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              17              770 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
               8              326 
$`ZNF292 MUTATED`
TCGA-06-0137 TCGA-06-0145 TCGA-06-1804 TCGA-CS-4942 TCGA-DB-A64W TCGA-DU-6392 
       26.70         2.33        13.61        43.89        14.40       211.17 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-7302 TCGA-FG-A87N TCGA-HT-7607 TCGA-HT-7687 
       65.75         1.22        60.30        18.64         3.16         0.10 
TCGA-IK-8125 TCGA-P5-A733 TCGA-S9-A6WD TCGA-S9-A6WP TCGA-TQ-A7RQ 
       42.77        13.61        75.25        18.64        26.14 

$`ZNF292 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 
       22.72        33.67        12.95        25.35        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.29         2.20        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       44.58        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1806 TCGA-06-2557 
       40.41        16.57        20.78        26.76        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        7.69        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6401 TCGA-DU-6402 
       22.42        49.02        75.16        46.06        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       62.01        25.91        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
      122.47         4.57        17.29        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
       44.68         6.05        42.74        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
      123.65       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       19.86        26.47        18.61        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  ZNF292 MUTATED ZNF292 WILD-TYPE 
            0.10             0.03 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
          211.17           182.33 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
          18.640           16.765 
[1] "0.1 - 211.2 (18.6)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
                  cls
clus                 0   1
  ZNF292 MUTATED     3  14
  ZNF292 WILD-TYPE 275 498
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF292 MUTATED      3   14
  ZNF292 WILD-TYPE  275  498
                        clus
vv                       ZNF292 MUTATED ZNF292 WILD-TYPE
  BRAIN                               3              275
  CENTRAL NERVOUS SYSTEM             14              498
[1] 2 2
[1] FALSE
D53V4, binary
                  cls
clus                 0   1
  ZNF292 MUTATED    12   5
  ZNF292 WILD-TYPE 317 456
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF292 MUTATED     12    5
  ZNF292 WILD-TYPE  317  456
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  FEMALE             12              317
  MALE                5              456
[1] 2 2
[1] FALSE
D53V5, binary
                  cls
clus                 0   1
  ZNF292 MUTATED     8   8
  ZNF292 WILD-TYPE 224 500
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF292 MUTATED      8    8
  ZNF292 WILD-TYPE  224  500
     clus
vv    ZNF292 MUTATED ZNF292 WILD-TYPE
  NO               8              224
  YES              8              500
[1] 2 2
[1] FALSE
D53V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZNF292 MUTATED             5                             0                3
  ZNF292 WILD-TYPE         187                             9              127
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZNF292 MUTATED                   6                   0
  ZNF292 WILD-TYPE               184                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  ZNF292 MUTATED                                 3
  ZNF292 WILD-TYPE                             262
D53V7, multiclass
                                 clus
vv                                ZNF292 MUTATED ZNF292 WILD-TYPE
  ASTROCYTOMA                                  5              187
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             3              127
  OLIGODENDROGLIOMA                            6              184
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              3              262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZNF292 MUTATED                                  0     1
  ZNF292 WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZNF292 MUTATED                           1    15
  ZNF292 WILD-TYPE                        37   707
D53V8, multiclass
                                  clus
vv                                 ZNF292 MUTATED ZNF292 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                        15              707
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V9, binary
                  cls
clus                 0   1
  ZNF292 MUTATED     1  15
  ZNF292 WILD-TYPE  34 651
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF292 MUTATED      1   15
  ZNF292 WILD-TYPE   34  651
                        clus
vv                       ZNF292 MUTATED ZNF292 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO             15              651
[1] 2 2
[1] FALSE

Clustering(54) Variable = KTELC1 MUTATION ANALYSIS
D54V1, survival
                  sevent
clus2                0   1
  KTELC1 MUTATED     5   0
  KTELC1 WILD-TYPE 448 334
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              782 
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               0              334 
$`KTELC1 MUTATED`
TCGA-FG-A6IZ TCGA-HW-8321 TCGA-S9-A6TV TCGA-WY-A85C TCGA-WY-A85E 
       15.02        42.54        18.77        46.88        20.81 

$`KTELC1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       17.82        21.53        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ 
       68.32        35.44        39.75        40.01         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TW 
        2.07        19.59        30.67        62.17        87.12        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85D 
       45.80        37.71 

  KTELC1 MUTATED KTELC1 WILD-TYPE 
           15.02             0.03 
  KTELC1 MUTATED KTELC1 WILD-TYPE 
           46.88           211.17 
  KTELC1 MUTATED KTELC1 WILD-TYPE 
          20.810           16.765 
[1] "15.0 - 46.9 (20.8)" "0.0 - 211.2 (16.8)"
[1] "hr="     "3300000"
D54V2, continuous
D54V3, binary
                  cls
clus                 0   1
  KTELC1 MUTATED     0   5
  KTELC1 WILD-TYPE 278 507
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KTELC1 MUTATED      0    5
  KTELC1 WILD-TYPE  278  507
                        clus
vv                       KTELC1 MUTATED KTELC1 WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM              5              507
[1] 2 2
[1] FALSE
D54V4, binary
                  cls
clus                 0   1
  KTELC1 MUTATED     1   4
  KTELC1 WILD-TYPE 328 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KTELC1 MUTATED      1    4
  KTELC1 WILD-TYPE  328  457
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  FEMALE              1              328
  MALE                4              457
[1] 2 2
[1] FALSE
D54V5, binary
                  cls
clus                 0   1
  KTELC1 MUTATED     1   4
  KTELC1 WILD-TYPE 231 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KTELC1 MUTATED      1    4
  KTELC1 WILD-TYPE  231  504
     clus
vv    KTELC1 MUTATED KTELC1 WILD-TYPE
  NO               1              231
  YES              4              504
[1] 2 2
[1] FALSE
D54V6, continuous
[1] "Remove cluster labels:" "KTELC1 MUTATED"        
clus
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               1              509 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0126       TCGA-06-0128       TCGA-06-0129       TCGA-06-0130 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0139       TCGA-06-0140       TCGA-06-0141       TCGA-06-0151 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0167       TCGA-06-0168       TCGA-06-0169 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0185 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0188       TCGA-06-0192       TCGA-06-0195       TCGA-06-0214 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0238       TCGA-06-0240       TCGA-06-0241 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0646       TCGA-06-0648       TCGA-06-0686 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0878 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-5408       TCGA-06-5410       TCGA-06-5411       TCGA-06-5412 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-5413       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-5418       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6695       TCGA-06-6697 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-06-6700       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5299       TCGA-12-5301 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-14-0740       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-4157       TCGA-15-0742       TCGA-19-1390 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5954       TCGA-19-5958 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5139       TCGA-26-6173 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-2502       TCGA-28-2509 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5219       TCGA-28-5220 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-2615       TCGA-32-2638 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-32-4213       TCGA-41-2571       TCGA-41-2573       TCGA-41-2575 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-CS-4938       TCGA-CS-4941       TCGA-CS-4942       TCGA-CS-4943 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5395 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-CS-5396       TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-CS-6290       TCGA-CS-6665       TCGA-CS-6666       TCGA-CS-6667 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-CS-6668       TCGA-CS-6669       TCGA-DB-5274       TCGA-DB-A4XE 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DB-A64L       TCGA-DB-A64Q       TCGA-DB-A64R       TCGA-DB-A64S 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DB-A64U       TCGA-DB-A64V       TCGA-DB-A64W       TCGA-DB-A64X 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DB-A75L       TCGA-DB-A75O       TCGA-DH-5140       TCGA-DH-5142 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DH-5143       TCGA-DH-5144       TCGA-DH-A66B       TCGA-DH-A66D 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DH-A66F       TCGA-DH-A66G       TCGA-DH-A7UR       TCGA-DH-A7UU 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DH-A7UV       TCGA-DU-5851       TCGA-DU-5852       TCGA-DU-5853 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870       TCGA-DU-5871 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-5874       TCGA-DU-6396       TCGA-DU-6401       TCGA-DU-6403 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6407       TCGA-DU-6408 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-6410       TCGA-DU-7009       TCGA-DU-7011       TCGA-DU-7013 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7294 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-7298       TCGA-DU-7299       TCGA-DU-7300       TCGA-DU-7301 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306       TCGA-DU-7309 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162       TCGA-DU-8163 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-8165       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TU       TCGA-DU-A5TW 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-A6S2       TCGA-DU-A6S6       TCGA-DU-A6S7       TCGA-DU-A6S8 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-A76R       TCGA-DU-A7T6       TCGA-DU-A7T8       TCGA-DU-A7TA 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-DU-A7TB       TCGA-DU-A7TC       TCGA-DU-A7TD       TCGA-DU-A7TG 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5305 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-5322       TCGA-E1-A7YE       TCGA-E1-A7YH       TCGA-E1-A7YI 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-A7YJ       TCGA-E1-A7YK       TCGA-E1-A7YL       TCGA-E1-A7YM 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-A7YN       TCGA-E1-A7YO       TCGA-E1-A7YQ       TCGA-E1-A7YS 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-A7YV       TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-E1-A7Z4       TCGA-E1-A7Z6       TCGA-FG-5963       TCGA-FG-5965 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-FG-7636       TCGA-FG-7638       TCGA-FG-8181       TCGA-FG-8185 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-FG-A4MT       TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A60J 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-FG-A60L       TCGA-FG-A6J1       TCGA-FG-A6J3       TCGA-FG-A711 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-FG-A713       TCGA-FG-A87Q       TCGA-HT-7468       TCGA-HT-7470 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-7475       TCGA-HT-7477       TCGA-HT-7481       TCGA-HT-7482 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-7485       TCGA-HT-7607       TCGA-HT-7609       TCGA-HT-7611 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-7686       TCGA-HT-7689       TCGA-HT-7692       TCGA-HT-7693 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-7694       TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7875       TCGA-HT-7884       TCGA-HT-8013 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8113       TCGA-HT-8564       TCGA-HT-A4DV 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5RA       TCGA-HT-A5RC       TCGA-HT-A615 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-A617       TCGA-HT-A618       TCGA-HT-A61A       TCGA-HT-A61B 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-HT-A61C       TCGA-HT-A74L       TCGA-IK-7675       TCGA-KT-A74X 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-KT-A7W1       TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-P5-A5EX       TCGA-P5-A5F0       TCGA-P5-A5F2       TCGA-P5-A5F4 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-P5-A5F6       TCGA-P5-A731       TCGA-QH-A65R       TCGA-QH-A65S 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-QH-A65V       TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-QH-A6CU       TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-QH-A6CY       TCGA-QH-A6CZ       TCGA-QH-A6X3       TCGA-QH-A6X4 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-QH-A6X5       TCGA-QH-A6X8       TCGA-QH-A6X9       TCGA-QH-A6XA 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-QH-A6XC       TCGA-QH-A86X       TCGA-QH-A870       TCGA-RY-A83Y 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-RY-A840       TCGA-RY-A845       TCGA-RY-A847       TCGA-S9-A6TS 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A6TU       TCGA-S9-A6TW       TCGA-S9-A6TX       TCGA-S9-A6TY 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A6TZ       TCGA-S9-A6U0       TCGA-S9-A6U1       TCGA-S9-A6U2 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U8       TCGA-S9-A6UA 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A6UB       TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A6WH       TCGA-S9-A6WI       TCGA-S9-A6WL       TCGA-S9-A6WM 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WO       TCGA-S9-A6WP       TCGA-S9-A6WQ 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A7IQ       TCGA-S9-A7IS       TCGA-S9-A7IX       TCGA-S9-A7IY 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A7IZ       TCGA-S9-A7J0       TCGA-S9-A7J1       TCGA-S9-A7J2 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A7J3       TCGA-S9-A7QW       TCGA-S9-A7QX       TCGA-S9-A7QY 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A7QZ       TCGA-S9-A7R1       TCGA-S9-A7R2       TCGA-S9-A7R3 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A7R4       TCGA-S9-A7R7       TCGA-S9-A7R8       TCGA-S9-A89V 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-S9-A89Z       TCGA-TM-A7C3       TCGA-TM-A7C4       TCGA-TM-A7C5 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TM-A7CA       TCGA-TM-A7CF       TCGA-TM-A84B       TCGA-TM-A84C 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TM-A84F       TCGA-TM-A84G       TCGA-TM-A84H       TCGA-TM-A84I 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TM-A84J       TCGA-TM-A84L       TCGA-TM-A84M       TCGA-TM-A84O 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TM-A84Q       TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TM-A84T 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TQ-A7RG       TCGA-TQ-A7RK       TCGA-TQ-A7RM       TCGA-TQ-A7RN 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TQ-A7RO       TCGA-TQ-A7RP       TCGA-TQ-A7RQ       TCGA-TQ-A7RR 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TQ-A7RS       TCGA-TQ-A7RU       TCGA-TQ-A7RV       TCGA-TQ-A7RW 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-TQ-A8XE       TCGA-VM-A8C8       TCGA-VM-A8CA       TCGA-VM-A8CD 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-VM-A8CE       TCGA-VM-A8CF       TCGA-VM-A8CH       TCGA-WY-A858 
"KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" "KTELC1 WILD-TYPE" 
      TCGA-WY-A859 
"KTELC1 WILD-TYPE" 
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KTELC1 MUTATED             2                             0                2
  KTELC1 WILD-TYPE         190                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KTELC1 MUTATED                   1                   0
  KTELC1 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  KTELC1 MUTATED                                 0
  KTELC1 WILD-TYPE                             265
D54V7, multiclass
                                 clus
vv                                KTELC1 MUTATED KTELC1 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KTELC1 MUTATED                                  0     0
  KTELC1 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  KTELC1 MUTATED                           0     5
  KTELC1 WILD-TYPE                        38   717
D54V8, multiclass
                                  clus
vv                                 KTELC1 MUTATED KTELC1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         5              717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V9, binary
                  cls
clus                 0   1
  KTELC1 MUTATED     0   3
  KTELC1 WILD-TYPE  35 663
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KTELC1 MUTATED      0    3
  KTELC1 WILD-TYPE   35  663
                        clus
vv                       KTELC1 MUTATED KTELC1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              3              663
[1] 2 2
[1] FALSE

Clustering(55) Variable = TLR6 MUTATION ANALYSIS
D55V1, survival
                sevent
clus2              0   1
  TLR6 MUTATED     3   5
  TLR6 WILD-TYPE 450 329
  TLR6 MUTATED TLR6 WILD-TYPE 
             8            779 
  TLR6 MUTATED TLR6 WILD-TYPE 
             5            329 
$`TLR6 MUTATED`
TCGA-06-0137 TCGA-06-0747 TCGA-06-0877 TCGA-28-5211 TCGA-32-4211 TCGA-DU-6403 
       26.70         2.70         5.65        11.77        12.59        11.64 
TCGA-HT-8113 TCGA-S9-A6WI 
       29.59        84.99 

$`TLR6 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 
       22.72        33.67        12.95        25.35        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 
        2.70         0.92        43.46        46.19         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
        2.53        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       20.32         3.72        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        1.22        87.45         7.04       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  TLR6 MUTATED TLR6 WILD-TYPE 
          2.70           0.03 
  TLR6 MUTATED TLR6 WILD-TYPE 
         84.99         211.17 
  TLR6 MUTATED TLR6 WILD-TYPE 
         12.18          16.83 
[1] "2.7 - 85.0 (12.2)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
                cls
clus               0   1
  TLR6 MUTATED     5   3
  TLR6 WILD-TYPE 273 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR6 MUTATED      5    3
  TLR6 WILD-TYPE  273  509
                        clus
vv                       TLR6 MUTATED TLR6 WILD-TYPE
  BRAIN                             5            273
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D55V4, binary
                cls
clus               0   1
  TLR6 MUTATED     4   4
  TLR6 WILD-TYPE 325 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR6 MUTATED      4    4
  TLR6 WILD-TYPE  325  457
        clus
vv       TLR6 MUTATED TLR6 WILD-TYPE
  FEMALE            4            325
  MALE              4            457
[1] 2 2
[1] FALSE
D55V5, binary
                cls
clus               0   1
  TLR6 MUTATED     0   8
  TLR6 WILD-TYPE 232 500
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR6 MUTATED      0    8
  TLR6 WILD-TYPE  232  500
     clus
vv    TLR6 MUTATED TLR6 WILD-TYPE
  NO             0            232
  YES            8            500
[1] 2 2
[1] FALSE
D55V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TLR6 MUTATED             0                             0                2
  TLR6 WILD-TYPE         192                             9              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TLR6 MUTATED                   1                   0
  TLR6 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TLR6 MUTATED                                 5
  TLR6 WILD-TYPE                             260
D55V7, multiclass
                                 clus
vv                                TLR6 MUTATED TLR6 WILD-TYPE
  ASTROCYTOMA                                0            192
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            5            260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TLR6 MUTATED                                  0     0
  TLR6 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TLR6 MUTATED                           2     6
  TLR6 WILD-TYPE                        36   716
D55V8, multiclass
                                  clus
vv                                 TLR6 MUTATED TLR6 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   2             36
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V9, binary
                cls
clus               0   1
  TLR6 MUTATED     0   7
  TLR6 WILD-TYPE  35 659
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR6 MUTATED      0    7
  TLR6 WILD-TYPE   35  659
                        clus
vv                       TLR6 MUTATED TLR6 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            7            659
[1] 2 2
[1] FALSE

Clustering(56) Variable = EGFR MUTATION ANALYSIS
D56V1, survival
                sevent
clus2              0   1
  EGFR MUTATED    28  80
  EGFR WILD-TYPE 425 254
  EGFR MUTATED EGFR WILD-TYPE 
           108            679 
  EGFR MUTATED EGFR WILD-TYPE 
            80            254 
$`EGFR MUTATED`
TCGA-02-0003 TCGA-02-2485 TCGA-06-0137 TCGA-06-0142 TCGA-06-0154 TCGA-06-0155 
        4.73        15.45        26.70         2.20        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0174 TCGA-06-0185 TCGA-06-0237 TCGA-06-0649 
        3.19        10.82         3.22        73.84        13.64         2.10 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 
       23.57        26.40         2.70         2.70         0.92        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-1804 TCGA-06-2557 TCGA-06-2561 
        7.17        40.41        16.57        13.61         1.08        17.65 
TCGA-06-2563 TCGA-06-2565 TCGA-06-2567 TCGA-06-5413 TCGA-06-5856 TCGA-06-6695 
       30.64        16.64         4.37         8.81         3.75         8.32 
TCGA-06-6700 TCGA-12-0616 TCGA-12-0619 TCGA-12-3650 TCGA-12-3652 TCGA-14-0786 
        4.77        14.73        34.92        10.95        34.92        23.05 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-1395 TCGA-14-1456 TCGA-14-1823 
       11.24        13.78         1.35         1.38        40.96        17.85 
TCGA-14-1829 TCGA-14-2554 TCGA-15-0742 TCGA-16-1045 TCGA-19-1790 TCGA-19-2620 
        7.17        17.49        13.78        29.03         5.06         4.87 
TCGA-19-2624 TCGA-19-2625 TCGA-26-1439 TCGA-26-5139 TCGA-27-1831 TCGA-27-1838 
        0.16         4.08        13.87         1.58        16.60        11.51 
TCGA-27-2528 TCGA-28-1747 TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 TCGA-32-1970 
       15.78         2.53        11.28         2.53        31.27        15.39 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2632 TCGA-76-4926 TCGA-76-4927 
       19.50         4.67        16.93         8.84         4.54        17.59 
TCGA-76-4931 TCGA-76-6191 TCGA-76-6282 TCGA-76-6656 TCGA-76-6661 TCGA-81-5910 
        9.17        16.70        17.06         4.83        23.90         1.61 
TCGA-81-5911 TCGA-DU-5852 TCGA-DU-6392 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7012 
       17.72         6.74       211.17         7.96        11.47         6.54 
TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-A5TT TCGA-DU-A5TY 
        7.96         5.10        14.60        21.40        24.43        33.96 
TCGA-DU-A7TD TCGA-E1-A7YJ TCGA-E1-A7YM TCGA-E1-A7YQ TCGA-E1-A7Z2 TCGA-FG-6692 
        7.50        19.46        21.30        51.88        13.08        18.44 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A70Z TCGA-FG-A87Q TCGA-HT-8104 TCGA-HT-8107 
       10.72        18.38        10.78         5.72        12.23         0.46 
TCGA-HT-8110 TCGA-HT-A5RC TCGA-HT-A61C TCGA-KT-A7W1 TCGA-QH-A6CX TCGA-QH-A6XC 
       13.78         5.33        17.65        14.40        12.23         5.03 
TCGA-S9-A6WN TCGA-S9-A7IX TCGA-S9-A7R2 TCGA-TM-A7C3 TCGA-TQ-A7RP TCGA-VM-A8CD 
       26.47        26.93        10.39        54.77        30.05         7.89 

$`EGFR WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 
        2.83        14.73         2.50        12.92        15.32        20.32 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 
        2.70         6.15        20.38         6.94        22.72        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0145 
       12.95        25.35        11.90         0.20        10.29         2.33 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
       46.59        12.33        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0178 TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 
        3.29         4.47        88.14        69.90        44.58        15.42 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
       38.96         7.40         7.63         0.53        15.02        24.16 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 
        0.72        13.32        20.42        48.69        12.62         5.75 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0875 
        5.75         9.80        14.20        46.88         7.86        43.46 
TCGA-06-0877 TCGA-06-0882 TCGA-06-0939 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 
        5.65        20.78        26.76        15.32        12.49         4.93 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       12.56         5.95         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        8.35         4.54         8.98         8.55         5.10         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 
      120.56         7.36        12.85         4.77         1.55         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0618 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       18.02        15.35        12.99        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       22.19        15.22        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0787 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.97         0.95         2.24         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1450 TCGA-14-1825 TCGA-14-3476 TCGA-14-4157 TCGA-15-1444 
        0.79        58.78         7.63         0.39         3.42        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-19-1390 TCGA-19-2619 TCGA-19-2623 TCGA-19-2629 
        3.91         4.31        25.38         9.67         7.53        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        7.92         2.33         5.06         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        30.05        14.04        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-28-1753 TCGA-28-2499 
       16.08         7.59         2.86        14.40         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        0.66         4.77         7.30         5.26        14.93        17.88 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 TCGA-32-1980 TCGA-32-1986 TCGA-32-2491 
       10.49         5.42         0.10         1.18        12.69        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.02        15.95        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 
        4.34        14.33         7.50         4.80         3.09         3.65 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
       47.93         2.53        36.85         3.29         2.70        11.38 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        8.35        20.98         5.03        34.45        18.64        36.20 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       17.46        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 
      133.74        19.89        16.83        94.52       114.08         2.40 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 
       62.96       156.23       154.36        14.99       105.21         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 
       90.77        30.67        26.30        10.36        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
        2.76        23.74        20.68        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        33.27        29.85        31.69        26.17        24.99 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       51.52        37.38        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YK 
      130.78        14.30        29.13        93.21         3.65        12.43 
TCGA-E1-A7YL TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       16.18        23.90        75.02        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
       36.82       146.14        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        42.54        41.33        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       38.27        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 
       15.02        16.44        22.26        28.54        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       20.45        18.64        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 
        6.25         0.10         2.50         5.56         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 
        0.13        20.22         0.07        27.35         0.10         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.52         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-P5-A5EV 
       20.81        20.71        19.00        42.77        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       14.53        13.61         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 
       16.34        16.73         1.91        16.50        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WO TCGA-S9-A6WP 
       38.56        84.99        31.10        19.86        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13         7.92        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
       27.16       169.84        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       18.71        20.48        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ 
       40.41        44.09        36.69        33.73        31.20        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       43.20        13.51         0.10        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  EGFR MUTATED EGFR WILD-TYPE 
          0.16           0.03 
  EGFR MUTATED EGFR WILD-TYPE 
        211.17         182.33 
  EGFR MUTATED EGFR WILD-TYPE 
        12.655         17.880 
[1] "0.2 - 211.2 (12.7)" "0.0 - 182.3 (17.9)"
[1] "hr=" "3"  
D56V2, continuous
D56V3, binary
                cls
clus               0   1
  EGFR MUTATED    73  35
  EGFR WILD-TYPE 205 477
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     73   35
  EGFR WILD-TYPE  205  477
                        clus
vv                       EGFR MUTATED EGFR WILD-TYPE
  BRAIN                            73            205
  CENTRAL NERVOUS SYSTEM           35            477
[1] 2 2
[1] FALSE
D56V4, binary
                cls
clus               0   1
  EGFR MUTATED    38  70
  EGFR WILD-TYPE 291 391
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     38   70
  EGFR WILD-TYPE  291  391
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           38            291
  MALE             70            391
[1] 2 2
[1] FALSE
D56V5, binary
                cls
clus               0   1
  EGFR MUTATED    18  83
  EGFR WILD-TYPE 214 425
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     18   83
  EGFR WILD-TYPE  214  425
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO            18            214
  YES           83            425
[1] 2 2
[1] FALSE
D56V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  EGFR MUTATED            20                             1                7
  EGFR WILD-TYPE         172                             8              123
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  EGFR MUTATED                   8                   0
  EGFR WILD-TYPE               182                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  EGFR MUTATED                                72
  EGFR WILD-TYPE                             193
D56V7, multiclass
                                 clus
vv                                EGFR MUTATED EGFR WILD-TYPE
  ASTROCYTOMA                               20            172
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                           7            123
  OLIGODENDROGLIOMA                          8            182
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           72            193
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  EGFR MUTATED                                  0     1
  EGFR WILD-TYPE                                1    12
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  EGFR MUTATED                          11    96
  EGFR WILD-TYPE                        27   626
D56V8, multiclass
                                  clus
vv                                 EGFR MUTATED EGFR WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             12
  BLACK OR AFRICAN AMERICAN                  11             27
  WHITE                                      96            626
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V9, binary
                cls
clus               0   1
  EGFR MUTATED     1  86
  EGFR WILD-TYPE  34 580
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      1   86
  EGFR WILD-TYPE   34  580
                        clus
vv                       EGFR MUTATED EGFR WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO           86            580
[1] 2 2
[1] FALSE

Clustering(57) Variable = ACADS MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2               0   1
  ACADS MUTATED     2   3
  ACADS WILD-TYPE 451 331
  ACADS MUTATED ACADS WILD-TYPE 
              5             782 
  ACADS MUTATED ACADS WILD-TYPE 
              3             331 
$`ACADS MUTATED`
TCGA-02-0033 TCGA-06-0188 TCGA-76-6193 TCGA-HT-8110 TCGA-HT-A5RA 
        2.83        44.58         2.70        13.78        27.35 

$`ACADS WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       73.84        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
        2.53        36.85        16.70         3.29        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
        5.56         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  ACADS MUTATED ACADS WILD-TYPE 
           2.70            0.03 
  ACADS MUTATED ACADS WILD-TYPE 
          44.58          211.17 
  ACADS MUTATED ACADS WILD-TYPE 
          13.78           16.83 
[1] "2.7 - 44.6 (13.8)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.8"
D57V2, continuous
D57V3, binary
                 cls
clus                0   1
  ACADS MUTATED     3   2
  ACADS WILD-TYPE 275 510
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACADS MUTATED      3    2
  ACADS WILD-TYPE  275  510
                        clus
vv                       ACADS MUTATED ACADS WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             2             510
[1] 2 2
[1] FALSE
D57V4, binary
                 cls
clus                0   1
  ACADS MUTATED     1   4
  ACADS WILD-TYPE 328 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACADS MUTATED      1    4
  ACADS WILD-TYPE  328  457
        clus
vv       ACADS MUTATED ACADS WILD-TYPE
  FEMALE             1             328
  MALE               4             457
[1] 2 2
[1] FALSE
D57V5, binary
                 cls
clus                0   1
  ACADS MUTATED     0   5
  ACADS WILD-TYPE 232 503
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACADS MUTATED      0    5
  ACADS WILD-TYPE  232  503
     clus
vv    ACADS MUTATED ACADS WILD-TYPE
  NO              0             232
  YES             5             503
[1] 2 2
[1] FALSE
D57V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ACADS MUTATED             2                             0                0
  ACADS WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ACADS MUTATED                   0                   0
  ACADS WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  ACADS MUTATED                                 3
  ACADS WILD-TYPE                             262
D57V7, multiclass
                                 clus
vv                                ACADS MUTATED ACADS WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ACADS MUTATED                                  0     0
  ACADS WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ACADS MUTATED                           0     4
  ACADS WILD-TYPE                        38   718
D57V8, multiclass
                                  clus
vv                                 ACADS MUTATED ACADS WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        4             718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V9, binary
                 cls
clus                0   1
  ACADS MUTATED     0   3
  ACADS WILD-TYPE  35 663
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACADS MUTATED      0    3
  ACADS WILD-TYPE   35  663
                        clus
vv                       ACADS MUTATED ACADS WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             3             663
[1] 2 2
[1] FALSE

Clustering(58) Variable = TMEM216 MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  TMEM216 MUTATED     3   0
  TMEM216 WILD-TYPE 450 334
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               784 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                0               334 
$`TMEM216 MUTATED`
TCGA-FG-A60J TCGA-HT-A5R9 TCGA-P5-A5F4 
       14.76         0.07         0.76 

$`TMEM216 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60K 
       38.27        10.72        18.38        18.71        23.70        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
        0.13        20.22        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        4.11         5.88         7.63         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  TMEM216 MUTATED TMEM216 WILD-TYPE 
             0.07              0.03 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
            14.76            211.17 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
             0.76             16.88 
[1] "0.1 - 14.8 (0.8)"   "0.0 - 211.2 (16.9)"
[1] "hr="    "440000"
D58V2, continuous
D58V3, binary
                   cls
clus                  0   1
  TMEM216 MUTATED     0   3
  TMEM216 WILD-TYPE 278 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM216 MUTATED      0    3
  TMEM216 WILD-TYPE  278  509
                        clus
vv                       TMEM216 MUTATED TMEM216 WILD-TYPE
  BRAIN                                0               278
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D58V4, binary
                   cls
clus                  0   1
  TMEM216 MUTATED     3   0
  TMEM216 WILD-TYPE 326 461
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM216 MUTATED      3    0
  TMEM216 WILD-TYPE  326  461
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  FEMALE               3               326
  MALE                 0               461
[1] 2 2
[1] FALSE
D58V5, binary
                   cls
clus                  0   1
  TMEM216 MUTATED     1   1
  TMEM216 WILD-TYPE 231 507
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM216 MUTATED      1    1
  TMEM216 WILD-TYPE  231  507
     clus
vv    TMEM216 MUTATED TMEM216 WILD-TYPE
  NO                1               231
  YES               1               507
[1] 2 2
[1] FALSE
D58V6, continuous
[1] "Remove cluster labels:" "TMEM216 MUTATED"       
clus
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                2               508 
       TCGA-02-0003        TCGA-02-0033        TCGA-02-0047        TCGA-02-0055 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-02-2470        TCGA-02-2483        TCGA-02-2485        TCGA-02-2486 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0126        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0151 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0154        TCGA-06-0155        TCGA-06-0157        TCGA-06-0158 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0165        TCGA-06-0167        TCGA-06-0168        TCGA-06-0169 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0185 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0188        TCGA-06-0192        TCGA-06-0195        TCGA-06-0214 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0238        TCGA-06-0240        TCGA-06-0241 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0646        TCGA-06-0648        TCGA-06-0686 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0743        TCGA-06-0744        TCGA-06-0745        TCGA-06-0747 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0750        TCGA-06-0875        TCGA-06-0876        TCGA-06-0878 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-1806        TCGA-06-2557        TCGA-06-2558        TCGA-06-2559 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-2561        TCGA-06-2562        TCGA-06-2563        TCGA-06-2564 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-2565        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5417 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6695        TCGA-06-6697 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-06-6700        TCGA-08-0386        TCGA-12-0615        TCGA-12-0616 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0688        TCGA-12-0692 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-12-0821        TCGA-12-1597        TCGA-12-3649        TCGA-12-3650 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5299        TCGA-12-5301 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-14-0740        TCGA-14-0786        TCGA-14-0787        TCGA-14-0789 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-14-1456        TCGA-14-1823        TCGA-14-1825        TCGA-14-1829 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-14-2554        TCGA-14-4157        TCGA-15-0742        TCGA-19-1390 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2623 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5954        TCGA-19-5958 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1442        TCGA-26-5132 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5139        TCGA-26-6173 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-26-6174        TCGA-27-1830        TCGA-27-1831        TCGA-27-1832 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-27-1833        TCGA-27-1834        TCGA-27-1835        TCGA-27-1836 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-27-1837        TCGA-27-1838        TCGA-27-2518        TCGA-27-2519 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-27-2521        TCGA-27-2523        TCGA-27-2524        TCGA-27-2526 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-27-2527        TCGA-27-2528        TCGA-28-2502        TCGA-28-2509 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-28-2513        TCGA-28-2514        TCGA-28-5204        TCGA-28-5207 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5211        TCGA-28-5213        TCGA-28-5214 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-28-5215        TCGA-28-5216        TCGA-28-5219        TCGA-28-5220 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-2615        TCGA-32-2638 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-32-4213        TCGA-41-2571        TCGA-41-2573        TCGA-41-2575 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4927 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-76-4934        TCGA-76-4935        TCGA-76-6191        TCGA-76-6192 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-76-6193        TCGA-76-6280        TCGA-76-6282        TCGA-76-6285 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6661 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-76-6662        TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-CS-4938        TCGA-CS-4941        TCGA-CS-4942        TCGA-CS-4943 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-CS-4944        TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5395 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-CS-5396        TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-CS-6290        TCGA-CS-6665        TCGA-CS-6666        TCGA-CS-6667 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-DB-5274        TCGA-DB-A4XE 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DB-A64L        TCGA-DB-A64Q        TCGA-DB-A64R        TCGA-DB-A64S 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W        TCGA-DB-A64X 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DB-A75L        TCGA-DB-A75O        TCGA-DH-5140        TCGA-DH-5142 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B        TCGA-DH-A66D 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7UR        TCGA-DH-A7UU 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DH-A7UV        TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-5874        TCGA-DU-6396        TCGA-DU-6401        TCGA-DU-6403 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6407        TCGA-DU-6408 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-6410        TCGA-DU-7009        TCGA-DU-7011        TCGA-DU-7013 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7294 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-7298        TCGA-DU-7299        TCGA-DU-7300        TCGA-DU-7301 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-8165        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TU        TCGA-DU-A5TW 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-A6S2        TCGA-DU-A6S6        TCGA-DU-A6S7        TCGA-DU-A6S8 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7T8        TCGA-DU-A7TA 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-DU-A7TB        TCGA-DU-A7TC        TCGA-DU-A7TD        TCGA-DU-A7TG 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-5322        TCGA-E1-A7YE        TCGA-E1-A7YH        TCGA-E1-A7YI 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-A7YJ        TCGA-E1-A7YK        TCGA-E1-A7YL        TCGA-E1-A7YM 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-A7YN        TCGA-E1-A7YO        TCGA-E1-A7YQ        TCGA-E1-A7YS 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-E1-A7Z4        TCGA-E1-A7Z6        TCGA-FG-5963        TCGA-FG-5965 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7638        TCGA-FG-8181        TCGA-FG-8185 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A60L 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-FG-A6J1        TCGA-FG-A6J3        TCGA-FG-A711        TCGA-FG-A713 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-FG-A87Q        TCGA-HT-7468        TCGA-HT-7470        TCGA-HT-7475 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7485 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7609        TCGA-HT-7611        TCGA-HT-7686 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-7689        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7858 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7884        TCGA-HT-8013        TCGA-HT-8105 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-8113        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R7 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-A5RA        TCGA-HT-A5RC        TCGA-HT-A615        TCGA-HT-A617 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-A618        TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A61C 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-HT-A74L        TCGA-IK-7675        TCGA-KT-A74X        TCGA-KT-A7W1 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F2        TCGA-P5-A5F6        TCGA-P5-A731 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-QH-A65R        TCGA-QH-A65S        TCGA-QH-A65V        TCGA-QH-A65X 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-QH-A65Z        TCGA-QH-A6CS        TCGA-QH-A6CU        TCGA-QH-A6CV 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-QH-A6CW        TCGA-QH-A6CX        TCGA-QH-A6CY        TCGA-QH-A6CZ 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-QH-A6X3        TCGA-QH-A6X4        TCGA-QH-A6X5        TCGA-QH-A6X8 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC        TCGA-QH-A86X 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-QH-A870        TCGA-RY-A83Y        TCGA-RY-A840        TCGA-RY-A845 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-RY-A847        TCGA-S9-A6TS        TCGA-S9-A6TU        TCGA-S9-A6TV 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A6TW        TCGA-S9-A6TX        TCGA-S9-A6TY        TCGA-S9-A6TZ 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U2        TCGA-S9-A6U5 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A6U6        TCGA-S9-A6U8        TCGA-S9-A6UA        TCGA-S9-A6UB 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG        TCGA-S9-A6WH 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A6WI        TCGA-S9-A6WL        TCGA-S9-A6WM        TCGA-S9-A6WN 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A6WO        TCGA-S9-A6WP        TCGA-S9-A6WQ        TCGA-S9-A7IQ 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A7IS        TCGA-S9-A7IX        TCGA-S9-A7IY        TCGA-S9-A7IZ 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7J3 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A7QW        TCGA-S9-A7QX        TCGA-S9-A7QY        TCGA-S9-A7QZ 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A7R1        TCGA-S9-A7R2        TCGA-S9-A7R3        TCGA-S9-A7R4 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-S9-A7R7        TCGA-S9-A7R8        TCGA-S9-A89V        TCGA-S9-A89Z 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TM-A7C3        TCGA-TM-A7C4        TCGA-TM-A7C5        TCGA-TM-A7CA 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TM-A7CF        TCGA-TM-A84B        TCGA-TM-A84C        TCGA-TM-A84F 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TM-A84G        TCGA-TM-A84H        TCGA-TM-A84I        TCGA-TM-A84J 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TM-A84L        TCGA-TM-A84M        TCGA-TM-A84O        TCGA-TM-A84Q 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TM-A84T        TCGA-TQ-A7RG 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TQ-A7RK        TCGA-TQ-A7RM        TCGA-TQ-A7RN        TCGA-TQ-A7RO 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TQ-A7RP        TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-TQ-A7RU        TCGA-TQ-A7RV        TCGA-TQ-A7RW        TCGA-TQ-A8XE 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-VM-A8C8        TCGA-VM-A8CA        TCGA-VM-A8CD        TCGA-VM-A8CE 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
       TCGA-VM-A8CF        TCGA-VM-A8CH        TCGA-WY-A858        TCGA-WY-A859 
"TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" "TMEM216 WILD-TYPE" 
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TMEM216 MUTATED             0                             0                1
  TMEM216 WILD-TYPE         192                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TMEM216 MUTATED                   2                   0
  TMEM216 WILD-TYPE               188                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  TMEM216 MUTATED                                 0
  TMEM216 WILD-TYPE                             265
D58V7, multiclass
                                 clus
vv                                TMEM216 MUTATED TMEM216 WILD-TYPE
  ASTROCYTOMA                                   0               192
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             2               188
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               0               265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TMEM216 MUTATED                                  0     0
  TMEM216 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  TMEM216 MUTATED                           0     3
  TMEM216 WILD-TYPE                        38   719
D58V8, multiclass
                                  clus
vv                                 TMEM216 MUTATED TMEM216 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          3               719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V9, binary
                   cls
clus                  0   1
  TMEM216 MUTATED     0   3
  TMEM216 WILD-TYPE  35 663
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM216 MUTATED      0    3
  TMEM216 WILD-TYPE   35  663
                        clus
vv                       TMEM216 MUTATED TMEM216 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               3               663
[1] 2 2
[1] FALSE

Clustering(59) Variable = ARID2 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2               0   1
  ARID2 MUTATED     9   4
  ARID2 WILD-TYPE 444 330
  ARID2 MUTATED ARID2 WILD-TYPE 
             13             774 
  ARID2 MUTATED ARID2 WILD-TYPE 
              4             330 
$`ARID2 MUTATED`
TCGA-19-2629 TCGA-32-1977 TCGA-DB-A75M TCGA-DH-A7UR TCGA-DU-5855 TCGA-DU-6392 
       24.23         0.10        17.88        54.25         6.81       211.17 
TCGA-DU-A5TY TCGA-DU-A7TB TCGA-E1-5303 TCGA-FG-A6IZ TCGA-S9-A7IS TCGA-S9-A89V 
       33.96        51.52        67.46        15.02         7.92        18.71 
TCGA-TM-A7CA 
       34.78 

$`ARID2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
       15.39        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        11.24        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        17.19        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        8.45       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A6S2 
       29.85        31.69        24.43        26.17        24.99        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TC 
       17.16        21.30        17.98       139.04        84.33        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5304 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6J1 
       18.71        23.70        14.76        17.82        21.53        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IX 
       26.47        18.61        18.64        14.07        36.13        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 
       99.06        30.05        98.63        31.59        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  ARID2 MUTATED ARID2 WILD-TYPE 
           0.10            0.03 
  ARID2 MUTATED ARID2 WILD-TYPE 
         211.17          182.33 
  ARID2 MUTATED ARID2 WILD-TYPE 
         24.230          16.715 
[1] "0.1 - 211.2 (24.2)" "0.0 - 182.3 (16.7)"
[1] "hr=" "2.2"
D59V2, continuous
D59V3, binary
                 cls
clus                0   1
  ARID2 MUTATED     2  11
  ARID2 WILD-TYPE 276 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      2   11
  ARID2 WILD-TYPE  276  501
                        clus
vv                       ARID2 MUTATED ARID2 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM            11             501
[1] 2 2
[1] FALSE
D59V4, binary
                 cls
clus                0   1
  ARID2 MUTATED     6   7
  ARID2 WILD-TYPE 323 454
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      6    7
  ARID2 WILD-TYPE  323  454
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  FEMALE             6             323
  MALE               7             454
[1] 2 2
[1] FALSE
D59V5, binary
                 cls
clus                0   1
  ARID2 MUTATED     2  10
  ARID2 WILD-TYPE 230 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      2   10
  ARID2 WILD-TYPE  230  498
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  NO              2             230
  YES            10             498
[1] 2 2
[1] FALSE
D59V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ARID2 MUTATED             7                             0                1
  ARID2 WILD-TYPE         185                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ARID2 MUTATED                   3                   0
  ARID2 WILD-TYPE               187                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  ARID2 MUTATED                                 2
  ARID2 WILD-TYPE                             263
D59V7, multiclass
                                 clus
vv                                ARID2 MUTATED ARID2 WILD-TYPE
  ASTROCYTOMA                                 7             185
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           3             187
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ARID2 MUTATED                                  0     1
  ARID2 WILD-TYPE                                1    12
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ARID2 MUTATED                           0    12
  ARID2 WILD-TYPE                        38   710
D59V8, multiclass
                                  clus
vv                                 ARID2 MUTATED ARID2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              12
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                       12             710
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V9, binary
                 cls
clus                0   1
  ARID2 MUTATED     1  12
  ARID2 WILD-TYPE  34 654
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      1   12
  ARID2 WILD-TYPE   34  654
                        clus
vv                       ARID2 MUTATED ARID2 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO            12             654
[1] 2 2
[1] FALSE

Clustering(60) Variable = FAM83D MUTATION ANALYSIS
D60V1, survival
                  sevent
clus2                0   1
  FAM83D MUTATED     2   3
  FAM83D WILD-TYPE 451 331
  FAM83D MUTATED FAM83D WILD-TYPE 
               5              782 
  FAM83D MUTATED FAM83D WILD-TYPE 
               3              331 
$`FAM83D MUTATED`
TCGA-14-1043 TCGA-41-5651 TCGA-DH-A7UU TCGA-E1-A7YN TCGA-HT-7687 
        0.79        15.12        13.71        23.90         0.10 

$`FAM83D WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        5.39         2.89        28.93         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        9.53         0.99         4.44        11.84         0.20        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       17.46        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       21.30        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 
        0.76        44.68         6.05        42.74        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  FAM83D MUTATED FAM83D WILD-TYPE 
            0.10             0.03 
  FAM83D MUTATED FAM83D WILD-TYPE 
           23.90           211.17 
  FAM83D MUTATED FAM83D WILD-TYPE 
           13.71            16.88 
[1] "0.1 - 23.9 (13.7)"  "0.0 - 211.2 (16.9)"
[1] "hr=" "2.9"
D60V2, continuous
D60V3, binary
                  cls
clus                 0   1
  FAM83D MUTATED     2   3
  FAM83D WILD-TYPE 276 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM83D MUTATED      2    3
  FAM83D WILD-TYPE  276  509
                        clus
vv                       FAM83D MUTATED FAM83D WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D60V4, binary
                  cls
clus                 0   1
  FAM83D MUTATED     2   3
  FAM83D WILD-TYPE 327 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM83D MUTATED      2    3
  FAM83D WILD-TYPE  327  458
        clus
vv       FAM83D MUTATED FAM83D WILD-TYPE
  FEMALE              2              327
  MALE                3              458
[1] 2 2
[1] FALSE
D60V5, binary
                  cls
clus                 0   1
  FAM83D MUTATED     0   4
  FAM83D WILD-TYPE 232 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM83D MUTATED      0    4
  FAM83D WILD-TYPE  232  504
     clus
vv    FAM83D MUTATED FAM83D WILD-TYPE
  NO               0              232
  YES              4              504
[1] 2 2
[1] FALSE
D60V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FAM83D MUTATED             2                             0                0
  FAM83D WILD-TYPE         190                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FAM83D MUTATED                   1                   0
  FAM83D WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  FAM83D MUTATED                                 2
  FAM83D WILD-TYPE                             263
D60V7, multiclass
                                 clus
vv                                FAM83D MUTATED FAM83D WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FAM83D MUTATED                                  0     0
  FAM83D WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  FAM83D MUTATED                           1     4
  FAM83D WILD-TYPE                        37   718
D60V8, multiclass
                                  clus
vv                                 FAM83D MUTATED FAM83D WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V9, binary
                  cls
clus                 0   1
  FAM83D MUTATED     0   4
  FAM83D WILD-TYPE  35 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM83D MUTATED      0    4
  FAM83D WILD-TYPE   35  662
                        clus
vv                       FAM83D MUTATED FAM83D WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(61) Variable = NEU2 MUTATION ANALYSIS
D61V1, survival
                sevent
clus2              0   1
  NEU2 MUTATED     3   5
  NEU2 WILD-TYPE 450 329
  NEU2 MUTATED NEU2 WILD-TYPE 
             8            779 
  NEU2 MUTATED NEU2 WILD-TYPE 
             5            329 
$`NEU2 MUTATED`
TCGA-06-0195 TCGA-12-0618 TCGA-14-1823 TCGA-DU-6399 TCGA-HT-A74H TCGA-HW-8322 
        7.40        12.99        17.85        65.75         2.43         6.18 
TCGA-P5-A733 TCGA-TQ-A8XE 
       13.61        31.36 

$`NEU2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0209 
       69.90        73.84        44.58        15.42        38.96         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       18.02        15.35        14.73        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1825 
       28.93         0.79         1.38        58.78        40.96         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       42.54        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
        9.01         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       61.41        26.99        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  NEU2 MUTATED NEU2 WILD-TYPE 
          2.43           0.03 
  NEU2 MUTATED NEU2 WILD-TYPE 
         65.75         211.17 
  NEU2 MUTATED NEU2 WILD-TYPE 
         13.30          16.83 
[1] "2.4 - 65.8 (13.3)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.8"
D61V2, continuous
D61V3, binary
                cls
clus               0   1
  NEU2 MUTATED     3   5
  NEU2 WILD-TYPE 275 507
[1] "tbl2"
                cls
clus             [,1] [,2]
  NEU2 MUTATED      3    5
  NEU2 WILD-TYPE  275  507
                        clus
vv                       NEU2 MUTATED NEU2 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            5            507
[1] 2 2
[1] FALSE
D61V4, binary
                cls
clus               0   1
  NEU2 MUTATED     3   5
  NEU2 WILD-TYPE 326 456
[1] "tbl2"
                cls
clus             [,1] [,2]
  NEU2 MUTATED      3    5
  NEU2 WILD-TYPE  326  456
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  FEMALE            3            326
  MALE              5            456
[1] 2 2
[1] FALSE
D61V5, binary
                cls
clus               0   1
  NEU2 MUTATED     2   6
  NEU2 WILD-TYPE 230 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  NEU2 MUTATED      2    6
  NEU2 WILD-TYPE  230  502
     clus
vv    NEU2 MUTATED NEU2 WILD-TYPE
  NO             2            230
  YES            6            502
[1] 2 2
[1] FALSE
D61V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NEU2 MUTATED             2                             0                0
  NEU2 WILD-TYPE         190                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NEU2 MUTATED                   3                   0
  NEU2 WILD-TYPE               187                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  NEU2 MUTATED                                 3
  NEU2 WILD-TYPE                             262
D61V7, multiclass
                                 clus
vv                                NEU2 MUTATED NEU2 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          3            187
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NEU2 MUTATED                                  0     0
  NEU2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  NEU2 MUTATED                           0     8
  NEU2 WILD-TYPE                        38   714
D61V8, multiclass
                                  clus
vv                                 NEU2 MUTATED NEU2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V9, binary
                cls
clus               0   1
  NEU2 MUTATED     1   6
  NEU2 WILD-TYPE  34 660
[1] "tbl2"
                cls
clus             [,1] [,2]
  NEU2 MUTATED      1    6
  NEU2 WILD-TYPE   34  660
                        clus
vv                       NEU2 MUTATED NEU2 WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            6            660
[1] 2 2
[1] FALSE

Clustering(62) Variable = LUM MUTATION ANALYSIS
D62V1, survival
               sevent
clus2             0   1
  LUM MUTATED     3   4
  LUM WILD-TYPE 450 330
  LUM MUTATED LUM WILD-TYPE 
            7           780 
  LUM MUTATED LUM WILD-TYPE 
            4           330 
$`LUM MUTATED`
TCGA-06-0126 TCGA-06-0145 TCGA-06-1806 TCGA-27-2524 TCGA-28-5211 TCGA-DU-6392 
        6.94         2.33        15.32         7.59        11.77       211.17 
TCGA-DU-8166 
       16.96 

$`LUM WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0128 
       15.45        20.32         2.70         6.15        20.38        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
       10.29         2.20        46.59        12.33        13.94        10.45 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       44.58        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 
       40.41        16.57        20.78        26.76        13.61         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       24.76        18.08        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       21.40        19.13        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  LUM MUTATED LUM WILD-TYPE 
         2.33          0.03 
  LUM MUTATED LUM WILD-TYPE 
       211.17        182.33 
  LUM MUTATED LUM WILD-TYPE 
        11.77         16.88 
[1] "2.3 - 211.2 (11.8)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.1"
D62V2, continuous
D62V3, binary
               cls
clus              0   1
  LUM MUTATED     5   2
  LUM WILD-TYPE 273 510
[1] "tbl2"
               cls
clus            [,1] [,2]
  LUM MUTATED      5    2
  LUM WILD-TYPE  273  510
                        clus
vv                       LUM MUTATED LUM WILD-TYPE
  BRAIN                            5           273
  CENTRAL NERVOUS SYSTEM           2           510
[1] 2 2
[1] FALSE
D62V4, binary
               cls
clus              0   1
  LUM MUTATED     3   4
  LUM WILD-TYPE 326 457
[1] "tbl2"
               cls
clus            [,1] [,2]
  LUM MUTATED      3    4
  LUM WILD-TYPE  326  457
        clus
vv       LUM MUTATED LUM WILD-TYPE
  FEMALE           3           326
  MALE             4           457
[1] 2 2
[1] FALSE
D62V5, binary
               cls
clus              0   1
  LUM MUTATED     1   5
  LUM WILD-TYPE 231 503
[1] "tbl2"
               cls
clus            [,1] [,2]
  LUM MUTATED      1    5
  LUM WILD-TYPE  231  503
     clus
vv    LUM MUTATED LUM WILD-TYPE
  NO            1           231
  YES           5           503
[1] 2 2
[1] FALSE
D62V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  LUM MUTATED             1                             1                1
  LUM WILD-TYPE         191                             8              129
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  LUM MUTATED                   0                   0
  LUM WILD-TYPE               190                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  LUM MUTATED                                 4
  LUM WILD-TYPE                             261
D62V7, multiclass
                                 clus
vv                                LUM MUTATED LUM WILD-TYPE
  ASTROCYTOMA                               1           191
  GLIOBLASTOMA MULTIFORME (GBM)             1             8
  OLIGOASTROCYTOMA                          1           129
  OLIGODENDROGLIOMA                         0           190
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           4           261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  LUM MUTATED                                  0     0
  LUM WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  LUM MUTATED                           1     6
  LUM WILD-TYPE                        37   716
D62V8, multiclass
                                  clus
vv                                 LUM MUTATED LUM WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  1            37
  WHITE                                      6           716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V9, binary
               cls
clus              0   1
  LUM MUTATED     0   6
  LUM WILD-TYPE  35 660
[1] "tbl2"
               cls
clus            [,1] [,2]
  LUM MUTATED      0    6
  LUM WILD-TYPE   35  660
                        clus
vv                       LUM MUTATED LUM WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO           6           660
[1] 2 2
[1] FALSE

Clustering(63) Variable = WRN MUTATION ANALYSIS
D63V1, survival
               sevent
clus2             0   1
  WRN MUTATED     5   1
  WRN WILD-TYPE 448 333
  WRN MUTATED WRN WILD-TYPE 
            6           781 
  WRN MUTATED WRN WILD-TYPE 
            1           333 
$`WRN MUTATED`
TCGA-06-2558 TCGA-DU-6392 TCGA-QH-A6X8 TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ 
       12.49       211.17        16.73        33.73        31.20        26.14 

$`WRN WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        15.32         1.08         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X9 TCGA-QH-A6XA 
        9.17        10.29        14.53        16.34         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RP TCGA-TQ-A7RR 
        2.04        40.41        44.09        36.69        30.05        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  WRN MUTATED WRN WILD-TYPE 
        12.49          0.03 
  WRN MUTATED WRN WILD-TYPE 
       211.17        182.33 
  WRN MUTATED WRN WILD-TYPE 
        28.67         16.80 
[1] "12.5 - 211.2 (28.7)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "5.1"
D63V2, continuous
D63V3, binary
               cls
clus              0   1
  WRN MUTATED     1   5
  WRN WILD-TYPE 277 507
[1] "tbl2"
               cls
clus            [,1] [,2]
  WRN MUTATED      1    5
  WRN WILD-TYPE  277  507
                        clus
vv                       WRN MUTATED WRN WILD-TYPE
  BRAIN                            1           277
  CENTRAL NERVOUS SYSTEM           5           507
[1] 2 2
[1] FALSE
D63V4, binary
               cls
clus              0   1
  WRN MUTATED     4   2
  WRN WILD-TYPE 325 459
[1] "tbl2"
               cls
clus            [,1] [,2]
  WRN MUTATED      4    2
  WRN WILD-TYPE  325  459
        clus
vv       WRN MUTATED WRN WILD-TYPE
  FEMALE           4           325
  MALE             2           459
[1] 2 2
[1] FALSE
D63V5, binary
               cls
clus              0   1
  WRN MUTATED     2   4
  WRN WILD-TYPE 230 504
[1] "tbl2"
               cls
clus            [,1] [,2]
  WRN MUTATED      2    4
  WRN WILD-TYPE  230  504
     clus
vv    WRN MUTATED WRN WILD-TYPE
  NO            2           230
  YES           4           504
[1] 2 2
[1] FALSE
D63V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  WRN MUTATED             1                             0                1
  WRN WILD-TYPE         191                             9              129
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  WRN MUTATED                   3                   0
  WRN WILD-TYPE               187                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  WRN MUTATED                                 1
  WRN WILD-TYPE                             264
D63V7, multiclass
                                 clus
vv                                WRN MUTATED WRN WILD-TYPE
  ASTROCYTOMA                               1           191
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          1           129
  OLIGODENDROGLIOMA                         3           187
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           1           264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  WRN MUTATED                                  0     0
  WRN WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  WRN MUTATED                           1     5
  WRN WILD-TYPE                        37   717
D63V8, multiclass
                                  clus
vv                                 WRN MUTATED WRN WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  1            37
  WHITE                                      5           717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V9, binary
               cls
clus              0   1
  WRN MUTATED     3   3
  WRN WILD-TYPE  32 663
[1] "tbl2"
               cls
clus            [,1] [,2]
  WRN MUTATED      3    3
  WRN WILD-TYPE   32  663
                        clus
vv                       WRN MUTATED WRN WILD-TYPE
  HISPANIC OR LATINO               3            32
  NOT HISPANIC OR LATINO           3           663
[1] 2 2
[1] FALSE

Clustering(64) Variable = TMEM184A MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  TMEM184A MUTATED     2   1
  TMEM184A WILD-TYPE 451 333
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                784 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 1                333 
$`TMEM184A MUTATED`
TCGA-DU-7012 TCGA-HT-7875 TCGA-QH-A6CZ 
        6.54         0.33         9.17 

$`TMEM184A WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 
      156.23       154.36        14.99       105.21         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  TMEM184A MUTATED TMEM184A WILD-TYPE 
              0.33               0.03 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
              9.17             211.17 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
              6.54              16.88 
[1] "0.3 - 9.2 (6.5)"    "0.0 - 211.2 (16.9)"
[1] "hr=" "3.5"
D64V2, continuous
D64V3, binary
                    cls
clus                   0   1
  TMEM184A MUTATED     0   3
  TMEM184A WILD-TYPE 278 509
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM184A MUTATED      0    3
  TMEM184A WILD-TYPE  278  509
                        clus
vv                       TMEM184A MUTATED TMEM184A WILD-TYPE
  BRAIN                                 0                278
  CENTRAL NERVOUS SYSTEM                3                509
[1] 2 2
[1] FALSE
D64V4, binary
                    cls
clus                   0   1
  TMEM184A MUTATED     1   2
  TMEM184A WILD-TYPE 328 459
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM184A MUTATED      1    2
  TMEM184A WILD-TYPE  328  459
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  FEMALE                1                328
  MALE                  2                459
[1] 2 2
[1] FALSE
D64V5, binary
                    cls
clus                   0   1
  TMEM184A MUTATED     1   2
  TMEM184A WILD-TYPE 231 506
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM184A MUTATED      1    2
  TMEM184A WILD-TYPE  231  506
     clus
vv    TMEM184A MUTATED TMEM184A WILD-TYPE
  NO                 1                231
  YES                2                506
[1] 2 2
[1] FALSE
D64V6, continuous
[1] "Remove cluster labels:" "TMEM184A MUTATED"      
clus
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 2                508 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0126 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0128         TCGA-06-0129         TCGA-06-0130 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0151         TCGA-06-0154         TCGA-06-0155 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0165 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0167         TCGA-06-0168         TCGA-06-0169 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0192 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0195         TCGA-06-0214         TCGA-06-0216 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0238         TCGA-06-0240         TCGA-06-0241 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0646         TCGA-06-0648 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0750 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0878 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0879         TCGA-06-0881         TCGA-06-0882 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-0939         TCGA-06-1806         TCGA-06-2557 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2567         TCGA-06-2569 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5417 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5858         TCGA-06-5859 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6700 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0615         TCGA-12-0616 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0688 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0821         TCGA-12-1597 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3652 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5299         TCGA-12-5301 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0786         TCGA-14-0787 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0813 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0871 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-14-1456         TCGA-14-1823         TCGA-14-1825 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-14-4157 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-15-0742         TCGA-19-1390         TCGA-19-1790 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4068         TCGA-19-5947 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5958         TCGA-19-5959 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5139 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-27-2528         TCGA-28-2502         TCGA-28-2509 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5211 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5219         TCGA-28-5220 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-2615 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4213         TCGA-41-2571 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-74-6573 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-4927         TCGA-76-4928         TCGA-76-4929 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4932         TCGA-76-4934 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-4935         TCGA-76-6191         TCGA-76-6192 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-6193         TCGA-76-6280         TCGA-76-6282 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6286         TCGA-76-6656 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-6657         TCGA-76-6661         TCGA-76-6662 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-4938         TCGA-CS-4941         TCGA-CS-4942 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-4943         TCGA-CS-4944         TCGA-CS-5390 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-5393         TCGA-CS-5395         TCGA-CS-5396 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-5397         TCGA-CS-6186         TCGA-CS-6188 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6290         TCGA-CS-6665         TCGA-CS-6666 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6667         TCGA-CS-6668         TCGA-CS-6669 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5274         TCGA-DB-A4XE         TCGA-DB-A64L 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A64Q         TCGA-DB-A64R         TCGA-DB-A64S 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A64U         TCGA-DB-A64V         TCGA-DB-A64W 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A64X         TCGA-DB-A75L         TCGA-DB-A75O 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-5140         TCGA-DH-5142         TCGA-DH-5143 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-5144         TCGA-DH-A66B         TCGA-DH-A66D 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-A66F         TCGA-DH-A66G         TCGA-DH-A7UR 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-A7UU         TCGA-DH-A7UV         TCGA-DU-5851 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5852         TCGA-DU-5853         TCGA-DU-5854 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5855         TCGA-DU-5870         TCGA-DU-5871 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5874         TCGA-DU-6396         TCGA-DU-6401 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6403         TCGA-DU-6404         TCGA-DU-6405 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6407         TCGA-DU-6408         TCGA-DU-6410 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7009         TCGA-DU-7011         TCGA-DU-7013 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7015         TCGA-DU-7018         TCGA-DU-7019 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7294         TCGA-DU-7298         TCGA-DU-7299 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7300         TCGA-DU-7301         TCGA-DU-7302 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7304         TCGA-DU-7306         TCGA-DU-7309 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8158         TCGA-DU-8161         TCGA-DU-8162 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8163         TCGA-DU-8165         TCGA-DU-8167 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8168         TCGA-DU-A5TP         TCGA-DU-A5TR 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A5TS         TCGA-DU-A5TU         TCGA-DU-A5TW 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A6S2         TCGA-DU-A6S6         TCGA-DU-A6S7 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A6S8         TCGA-DU-A76R         TCGA-DU-A7T6 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A7T8         TCGA-DU-A7TA         TCGA-DU-A7TB 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A7TC         TCGA-DU-A7TD         TCGA-DU-A7TG 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5302         TCGA-E1-5303         TCGA-E1-5304 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5305         TCGA-E1-5307         TCGA-E1-5311 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5318         TCGA-E1-5319         TCGA-E1-5322 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-A7YE         TCGA-E1-A7YH         TCGA-E1-A7YI 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-A7YJ         TCGA-E1-A7YK         TCGA-E1-A7YL 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-A7YM         TCGA-E1-A7YN         TCGA-E1-A7YO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-A7YQ         TCGA-E1-A7YS         TCGA-E1-A7YV 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-A7YW         TCGA-E1-A7YY         TCGA-E1-A7Z2 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-A7Z4         TCGA-E1-A7Z6         TCGA-FG-5963 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-5965         TCGA-FG-6688         TCGA-FG-6689 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-6690         TCGA-FG-6691         TCGA-FG-7636 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-7638         TCGA-FG-8181         TCGA-FG-8185 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8186         TCGA-FG-8187         TCGA-FG-8188 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8189         TCGA-FG-A4MT         TCGA-FG-A4MW 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A4MX         TCGA-FG-A60J         TCGA-FG-A60L 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A6J1         TCGA-FG-A6J3         TCGA-FG-A711 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A713         TCGA-FG-A87Q         TCGA-HT-7468 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7470         TCGA-HT-7475         TCGA-HT-7477 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7481         TCGA-HT-7482         TCGA-HT-7485 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7607         TCGA-HT-7609         TCGA-HT-7611 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7686         TCGA-HT-7689         TCGA-HT-7692 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7693         TCGA-HT-7694         TCGA-HT-7854 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7855         TCGA-HT-7856         TCGA-HT-7858 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7884         TCGA-HT-8013         TCGA-HT-8105 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8113         TCGA-HT-8564         TCGA-HT-A4DV 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A5R7         TCGA-HT-A5RA         TCGA-HT-A5RC 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A615         TCGA-HT-A617         TCGA-HT-A618 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A61A         TCGA-HT-A61B         TCGA-HT-A61C 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A74L         TCGA-IK-7675         TCGA-KT-A74X 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-KT-A7W1         TCGA-P5-A5EU         TCGA-P5-A5EV 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5EW         TCGA-P5-A5EX         TCGA-P5-A5F0 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5F2         TCGA-P5-A5F4         TCGA-P5-A5F6 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A731         TCGA-QH-A65R         TCGA-QH-A65S 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-QH-A65V         TCGA-QH-A65X         TCGA-QH-A65Z 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-QH-A6CS         TCGA-QH-A6CU         TCGA-QH-A6CV 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-QH-A6CW         TCGA-QH-A6CX         TCGA-QH-A6CY 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-QH-A6X3         TCGA-QH-A6X4         TCGA-QH-A6X5 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-QH-A6X8         TCGA-QH-A6X9         TCGA-QH-A6XA 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-QH-A6XC         TCGA-QH-A86X         TCGA-QH-A870 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-RY-A83Y         TCGA-RY-A840         TCGA-RY-A845 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-RY-A847         TCGA-S9-A6TS         TCGA-S9-A6TU 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6TV         TCGA-S9-A6TW         TCGA-S9-A6TX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6TY         TCGA-S9-A6TZ         TCGA-S9-A6U0 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6U1         TCGA-S9-A6U2         TCGA-S9-A6U5 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6U6         TCGA-S9-A6U8         TCGA-S9-A6UA 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6UB         TCGA-S9-A6WD         TCGA-S9-A6WE 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6WG         TCGA-S9-A6WH         TCGA-S9-A6WI 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6WL         TCGA-S9-A6WM         TCGA-S9-A6WN 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A6WO         TCGA-S9-A6WP         TCGA-S9-A6WQ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7IQ         TCGA-S9-A7IS         TCGA-S9-A7IX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7IY         TCGA-S9-A7IZ         TCGA-S9-A7J0 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7J1         TCGA-S9-A7J2         TCGA-S9-A7J3 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7QW         TCGA-S9-A7QX         TCGA-S9-A7QY 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7QZ         TCGA-S9-A7R1         TCGA-S9-A7R2 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7R3         TCGA-S9-A7R4         TCGA-S9-A7R7 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-S9-A7R8         TCGA-S9-A89V         TCGA-S9-A89Z 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A7C3         TCGA-TM-A7C4         TCGA-TM-A7C5 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A7CA         TCGA-TM-A7CF         TCGA-TM-A84B 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A84C         TCGA-TM-A84F         TCGA-TM-A84G 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A84H         TCGA-TM-A84I         TCGA-TM-A84J 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A84L         TCGA-TM-A84M         TCGA-TM-A84O 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A84Q         TCGA-TM-A84R         TCGA-TM-A84S 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TM-A84T         TCGA-TQ-A7RG         TCGA-TQ-A7RK 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TQ-A7RM         TCGA-TQ-A7RN         TCGA-TQ-A7RO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TQ-A7RP         TCGA-TQ-A7RQ         TCGA-TQ-A7RR 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TQ-A7RS         TCGA-TQ-A7RU         TCGA-TQ-A7RV 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-TQ-A7RW         TCGA-TQ-A8XE         TCGA-VM-A8C8 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-VM-A8CA         TCGA-VM-A8CD         TCGA-VM-A8CE 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-VM-A8CF         TCGA-VM-A8CH         TCGA-WY-A858 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-WY-A859 
"TMEM184A WILD-TYPE" 
                    vv
clus                 ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TMEM184A MUTATED             1                             0                1
  TMEM184A WILD-TYPE         191                             9              129
                    vv
clus                 OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TMEM184A MUTATED                   1                   0
  TMEM184A WILD-TYPE               189                   4
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  TMEM184A MUTATED                                 0
  TMEM184A WILD-TYPE                             265
D64V7, multiclass
                                 clus
vv                                TMEM184A MUTATED TMEM184A WILD-TYPE
  ASTROCYTOMA                                    1                191
  GLIOBLASTOMA MULTIFORME (GBM)                  0                  9
  OLIGOASTROCYTOMA                               1                129
  OLIGODENDROGLIOMA                              1                189
  TREATED PRIMARY GBM                            0                  4
  UNTREATED PRIMARY (DE NOVO) GBM                0                265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TMEM184A MUTATED                                  0     0
  TMEM184A WILD-TYPE                                1    13
                    vv
clus                 BLACK OR AFRICAN AMERICAN WHITE
  TMEM184A MUTATED                           1     2
  TMEM184A WILD-TYPE                        37   720
D64V8, multiclass
                                  clus
vv                                 TMEM184A MUTATED TMEM184A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                0                  1
  ASIAN                                           0                 13
  BLACK OR AFRICAN AMERICAN                       1                 37
  WHITE                                           2                720
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V9, binary
                    cls
clus                   0   1
  TMEM184A MUTATED     0   3
  TMEM184A WILD-TYPE  35 663
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM184A MUTATED      0    3
  TMEM184A WILD-TYPE   35  663
                        clus
vv                       TMEM184A MUTATED TMEM184A WILD-TYPE
  HISPANIC OR LATINO                    0                 35
  NOT HISPANIC OR LATINO                3                663
[1] 2 2
[1] FALSE

Clustering(65) Variable = ZNF512B MUTATION ANALYSIS
D65V1, survival
                   sevent
clus2                 0   1
  ZNF512B MUTATED     5   0
  ZNF512B WILD-TYPE 448 334
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               782 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                0               334 
$`ZNF512B MUTATED`
TCGA-DU-6392 TCGA-HT-7471 TCGA-HT-7688 TCGA-S9-A6U6 TCGA-TQ-A7RK 
      211.17         0.13        31.69        35.15        44.09 

$`ZNF512B WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 
        0.10         6.67        11.54        40.11         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
        0.10        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       32.61        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       40.41        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  ZNF512B MUTATED ZNF512B WILD-TYPE 
             0.13              0.03 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
           211.17            182.33 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
           35.150            16.765 
[1] "0.1 - 211.2 (35.1)" "0.0 - 182.3 (16.8)"
[1] "hr="     "9600000"
D65V2, continuous
D65V3, binary
                   cls
clus                  0   1
  ZNF512B MUTATED     0   5
  ZNF512B WILD-TYPE 278 507
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF512B MUTATED      0    5
  ZNF512B WILD-TYPE  278  507
                        clus
vv                       ZNF512B MUTATED ZNF512B WILD-TYPE
  BRAIN                                0               278
  CENTRAL NERVOUS SYSTEM               5               507
[1] 2 2
[1] FALSE
D65V4, binary
                   cls
clus                  0   1
  ZNF512B MUTATED     2   3
  ZNF512B WILD-TYPE 327 458
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF512B MUTATED      2    3
  ZNF512B WILD-TYPE  327  458
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  FEMALE               2               327
  MALE                 3               458
[1] 2 2
[1] FALSE
D65V5, binary
                   cls
clus                  0   1
  ZNF512B MUTATED     1   3
  ZNF512B WILD-TYPE 231 505
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF512B MUTATED      1    3
  ZNF512B WILD-TYPE  231  505
     clus
vv    ZNF512B MUTATED ZNF512B WILD-TYPE
  NO                1               231
  YES               3               505
[1] 2 2
[1] FALSE
D65V6, continuous
[1] "Remove cluster labels:" "ZNF512B MUTATED"       
clus
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                2               508 
       TCGA-02-0003        TCGA-02-0033        TCGA-02-0047        TCGA-02-0055 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-02-2470        TCGA-02-2483        TCGA-02-2485        TCGA-02-2486 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0126        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0151 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0154        TCGA-06-0155        TCGA-06-0157        TCGA-06-0158 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0165        TCGA-06-0167        TCGA-06-0168        TCGA-06-0169 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0185 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0188        TCGA-06-0192        TCGA-06-0195        TCGA-06-0214 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0238        TCGA-06-0240        TCGA-06-0241 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0646        TCGA-06-0648        TCGA-06-0686 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0743        TCGA-06-0744        TCGA-06-0745        TCGA-06-0747 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0750        TCGA-06-0875        TCGA-06-0876        TCGA-06-0878 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-1806        TCGA-06-2557        TCGA-06-2558        TCGA-06-2559 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-2561        TCGA-06-2562        TCGA-06-2563        TCGA-06-2564 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-2565        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5417 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6695        TCGA-06-6697 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-06-6700        TCGA-08-0386        TCGA-12-0615        TCGA-12-0616 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0688        TCGA-12-0692 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-12-0821        TCGA-12-1597        TCGA-12-3649        TCGA-12-3650 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5299        TCGA-12-5301 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-14-0740        TCGA-14-0786        TCGA-14-0787        TCGA-14-0789 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-14-1456        TCGA-14-1823        TCGA-14-1825        TCGA-14-1829 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-14-2554        TCGA-14-4157        TCGA-15-0742        TCGA-19-1390 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2623 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5954        TCGA-19-5958 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1442        TCGA-26-5132 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5139        TCGA-26-6173 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-26-6174        TCGA-27-1830        TCGA-27-1831        TCGA-27-1832 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-27-1833        TCGA-27-1834        TCGA-27-1835        TCGA-27-1836 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-27-1837        TCGA-27-1838        TCGA-27-2518        TCGA-27-2519 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-27-2521        TCGA-27-2523        TCGA-27-2524        TCGA-27-2526 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-27-2527        TCGA-27-2528        TCGA-28-2502        TCGA-28-2509 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-28-2513        TCGA-28-2514        TCGA-28-5204        TCGA-28-5207 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5211        TCGA-28-5213        TCGA-28-5214 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-28-5215        TCGA-28-5216        TCGA-28-5219        TCGA-28-5220 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-2615        TCGA-32-2638 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-32-4213        TCGA-41-2571        TCGA-41-2573        TCGA-41-2575 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4927 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-76-4934        TCGA-76-4935        TCGA-76-6191        TCGA-76-6192 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-76-6193        TCGA-76-6280        TCGA-76-6282        TCGA-76-6285 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6661 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-76-6662        TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-CS-4938        TCGA-CS-4941        TCGA-CS-4942        TCGA-CS-4943 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-CS-4944        TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5395 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-CS-5396        TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-CS-6290        TCGA-CS-6665        TCGA-CS-6666        TCGA-CS-6667 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-DB-5274        TCGA-DB-A4XE 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DB-A64L        TCGA-DB-A64Q        TCGA-DB-A64R        TCGA-DB-A64S 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W        TCGA-DB-A64X 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DB-A75L        TCGA-DB-A75O        TCGA-DH-5140        TCGA-DH-5142 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B        TCGA-DH-A66D 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7UR        TCGA-DH-A7UU 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DH-A7UV        TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-5874        TCGA-DU-6396        TCGA-DU-6401        TCGA-DU-6403 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6407        TCGA-DU-6408 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-6410        TCGA-DU-7009        TCGA-DU-7011        TCGA-DU-7013 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7294 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-7298        TCGA-DU-7299        TCGA-DU-7300        TCGA-DU-7301 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-8165        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TU        TCGA-DU-A5TW 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-A6S2        TCGA-DU-A6S6        TCGA-DU-A6S7        TCGA-DU-A6S8 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7T8        TCGA-DU-A7TA 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-DU-A7TB        TCGA-DU-A7TC        TCGA-DU-A7TD        TCGA-DU-A7TG 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-5322        TCGA-E1-A7YE        TCGA-E1-A7YH        TCGA-E1-A7YI 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-A7YJ        TCGA-E1-A7YK        TCGA-E1-A7YL        TCGA-E1-A7YM 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-A7YN        TCGA-E1-A7YO        TCGA-E1-A7YQ        TCGA-E1-A7YS 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-E1-A7Z4        TCGA-E1-A7Z6        TCGA-FG-5963        TCGA-FG-5965 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7638        TCGA-FG-8181        TCGA-FG-8185 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A60J 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-FG-A60L        TCGA-FG-A6J1        TCGA-FG-A6J3        TCGA-FG-A711 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-FG-A713        TCGA-FG-A87Q        TCGA-HT-7468        TCGA-HT-7470 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7477        TCGA-HT-7481        TCGA-HT-7482 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-7485        TCGA-HT-7607        TCGA-HT-7609        TCGA-HT-7611 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7689        TCGA-HT-7692        TCGA-HT-7693 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-7694        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7875        TCGA-HT-7884        TCGA-HT-8013 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8113        TCGA-HT-8564        TCGA-HT-A4DV 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5RA        TCGA-HT-A5RC        TCGA-HT-A615 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-A617        TCGA-HT-A618        TCGA-HT-A61A        TCGA-HT-A61B 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-HT-A61C        TCGA-HT-A74L        TCGA-IK-7675        TCGA-KT-A74X 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-KT-A7W1        TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-P5-A5EX        TCGA-P5-A5F0        TCGA-P5-A5F2        TCGA-P5-A5F4 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-P5-A5F6        TCGA-P5-A731        TCGA-QH-A65R        TCGA-QH-A65S 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X3        TCGA-QH-A6X4 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-QH-A6X5        TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-QH-A6XC        TCGA-QH-A86X        TCGA-QH-A870        TCGA-RY-A83Y 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-RY-A840        TCGA-RY-A845        TCGA-RY-A847        TCGA-S9-A6TS 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TW        TCGA-S9-A6TX 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A6TY        TCGA-S9-A6TZ        TCGA-S9-A6U0        TCGA-S9-A6U1 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A6U2        TCGA-S9-A6U5        TCGA-S9-A6U8        TCGA-S9-A6UA 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A6UB        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WI        TCGA-S9-A6WL        TCGA-S9-A6WM 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A6WN        TCGA-S9-A6WO        TCGA-S9-A6WP        TCGA-S9-A6WQ 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IX        TCGA-S9-A7IY 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A7IZ        TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A7J3        TCGA-S9-A7QW        TCGA-S9-A7QX        TCGA-S9-A7QY 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R2        TCGA-S9-A7R3 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A7R4        TCGA-S9-A7R7        TCGA-S9-A7R8        TCGA-S9-A89V 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-S9-A89Z        TCGA-TM-A7C3        TCGA-TM-A7C4        TCGA-TM-A7C5 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TM-A7CA        TCGA-TM-A7CF        TCGA-TM-A84B        TCGA-TM-A84C 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TM-A84F        TCGA-TM-A84G        TCGA-TM-A84H        TCGA-TM-A84I 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TM-A84J        TCGA-TM-A84L        TCGA-TM-A84M        TCGA-TM-A84O 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TM-A84Q        TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TM-A84T 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TQ-A7RG        TCGA-TQ-A7RM        TCGA-TQ-A7RN        TCGA-TQ-A7RO 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TQ-A7RP        TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-TQ-A7RU        TCGA-TQ-A7RV        TCGA-TQ-A7RW        TCGA-TQ-A8XE 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-VM-A8C8        TCGA-VM-A8CA        TCGA-VM-A8CD        TCGA-VM-A8CE 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
       TCGA-VM-A8CF        TCGA-VM-A8CH        TCGA-WY-A858        TCGA-WY-A859 
"ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" "ZNF512B WILD-TYPE" 
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZNF512B MUTATED             2                             0                1
  ZNF512B WILD-TYPE         190                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZNF512B MUTATED                   2                   0
  ZNF512B WILD-TYPE               188                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  ZNF512B MUTATED                                 0
  ZNF512B WILD-TYPE                             265
D65V7, multiclass
                                 clus
vv                                ZNF512B MUTATED ZNF512B WILD-TYPE
  ASTROCYTOMA                                   2               190
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             2               188
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               0               265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZNF512B MUTATED                                  0     0
  ZNF512B WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  ZNF512B MUTATED                           0     5
  ZNF512B WILD-TYPE                        38   717
D65V8, multiclass
                                  clus
vv                                 ZNF512B MUTATED ZNF512B WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          5               717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V9, binary
                   cls
clus                  0   1
  ZNF512B MUTATED     1   4
  ZNF512B WILD-TYPE  34 662
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF512B MUTATED      1    4
  ZNF512B WILD-TYPE   34  662
                        clus
vv                       ZNF512B MUTATED ZNF512B WILD-TYPE
  HISPANIC OR LATINO                   1                34
  NOT HISPANIC OR LATINO               4               662
[1] 2 2
[1] FALSE

Clustering(66) Variable = PRCP MUTATION ANALYSIS
D66V1, survival
                sevent
clus2              0   1
  PRCP MUTATED     1   4
  PRCP WILD-TYPE 452 330
  PRCP MUTATED PRCP WILD-TYPE 
             5            782 
  PRCP MUTATED PRCP WILD-TYPE 
             4            330 
$`PRCP MUTATED`
TCGA-06-0122 TCGA-12-0615 TCGA-76-4927 TCGA-DU-6403 TCGA-HT-8564 
        6.15        15.35        17.59        11.64        15.72 

$`PRCP WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       15.45        20.32         2.70        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       18.02        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
        4.54         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 
       46.06        65.75         1.22        87.45         7.04       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  PRCP MUTATED PRCP WILD-TYPE 
          6.15           0.03 
  PRCP MUTATED PRCP WILD-TYPE 
         17.59         211.17 
  PRCP MUTATED PRCP WILD-TYPE 
         15.35          16.88 
[1] "6.2 - 17.6 (15.3)"  "0.0 - 211.2 (16.9)"
[1] "hr=" "3.1"
D66V2, continuous
D66V3, binary
                cls
clus               0   1
  PRCP MUTATED     3   2
  PRCP WILD-TYPE 275 510
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRCP MUTATED      3    2
  PRCP WILD-TYPE  275  510
                        clus
vv                       PRCP MUTATED PRCP WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            2            510
[1] 2 2
[1] FALSE
D66V4, binary
                cls
clus               0   1
  PRCP MUTATED     3   2
  PRCP WILD-TYPE 326 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRCP MUTATED      3    2
  PRCP WILD-TYPE  326  459
        clus
vv       PRCP MUTATED PRCP WILD-TYPE
  FEMALE            3            326
  MALE              2            459
[1] 2 2
[1] FALSE
D66V5, binary
                cls
clus               0   1
  PRCP MUTATED     1   2
  PRCP WILD-TYPE 231 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRCP MUTATED      1    2
  PRCP WILD-TYPE  231  506
     clus
vv    PRCP MUTATED PRCP WILD-TYPE
  NO             1            231
  YES            2            506
[1] 2 2
[1] FALSE
D66V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PRCP MUTATED             1                             0                1
  PRCP WILD-TYPE         191                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PRCP MUTATED                   0                   0
  PRCP WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PRCP MUTATED                                 3
  PRCP WILD-TYPE                             262
D66V7, multiclass
                                 clus
vv                                PRCP MUTATED PRCP WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PRCP MUTATED                                  0     0
  PRCP WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PRCP MUTATED                           0     5
  PRCP WILD-TYPE                        38   717
D66V8, multiclass
                                  clus
vv                                 PRCP MUTATED PRCP WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       5            717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V9, binary
                cls
clus               0   1
  PRCP MUTATED     1   3
  PRCP WILD-TYPE  34 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRCP MUTATED      1    3
  PRCP WILD-TYPE   34  663
                        clus
vv                       PRCP MUTATED PRCP WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(67) Variable = ATF7IP2 MUTATION ANALYSIS
D67V1, survival
                   sevent
clus2                 0   1
  ATF7IP2 MUTATED     3   5
  ATF7IP2 WILD-TYPE 450 329
  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
                8               779 
  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
                5               329 
$`ATF7IP2 MUTATED`
TCGA-06-0166 TCGA-19-2631 TCGA-27-1838 TCGA-28-2513 TCGA-76-6661 TCGA-DU-A5TP 
        5.85         7.00        11.51         7.30        23.90        33.27 
TCGA-FG-A4MW TCGA-HT-A617 
       18.38        16.14 

$`ATF7IP2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0167 
       13.94        10.45         3.19        10.82        10.65        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       24.23         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        4.77         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
       20.98         4.83         5.03        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       38.27        10.72        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
        2.70        16.93         1.81        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
             5.85              0.03 
  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
            33.27            211.17 
  ATF7IP2 MUTATED ATF7IP2 WILD-TYPE 
           13.825            16.830 
[1] "5.8 - 33.3 (13.8)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2.1"
D67V2, continuous
D67V3, binary
                   cls
clus                  0   1
  ATF7IP2 MUTATED     5   3
  ATF7IP2 WILD-TYPE 273 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATF7IP2 MUTATED      5    3
  ATF7IP2 WILD-TYPE  273  509
                        clus
vv                       ATF7IP2 MUTATED ATF7IP2 WILD-TYPE
  BRAIN                                5               273
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D67V4, binary
                   cls
clus                  0   1
  ATF7IP2 MUTATED     3   5
  ATF7IP2 WILD-TYPE 326 456
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATF7IP2 MUTATED      3    5
  ATF7IP2 WILD-TYPE  326  456
        clus
vv       ATF7IP2 MUTATED ATF7IP2 WILD-TYPE
  FEMALE               3               326
  MALE                 5               456
[1] 2 2
[1] FALSE
D67V5, binary
                   cls
clus                  0   1
  ATF7IP2 MUTATED     1   6
  ATF7IP2 WILD-TYPE 231 502
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATF7IP2 MUTATED      1    6
  ATF7IP2 WILD-TYPE  231  502
     clus
vv    ATF7IP2 MUTATED ATF7IP2 WILD-TYPE
  NO                1               231
  YES               6               502
[1] 2 2
[1] FALSE
D67V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ATF7IP2 MUTATED             1                             0                1
  ATF7IP2 WILD-TYPE         191                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ATF7IP2 MUTATED                   1                   0
  ATF7IP2 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  ATF7IP2 MUTATED                                 5
  ATF7IP2 WILD-TYPE                             260
D67V7, multiclass
                                 clus
vv                                ATF7IP2 MUTATED ATF7IP2 WILD-TYPE
  ASTROCYTOMA                                   1               191
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               5               260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ATF7IP2 MUTATED                                  1     0
  ATF7IP2 WILD-TYPE                                0    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  ATF7IP2 MUTATED                           0     7
  ATF7IP2 WILD-TYPE                        38   715
D67V8, multiclass
                                  clus
vv                                 ATF7IP2 MUTATED ATF7IP2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               1                 0
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          7               715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V9, binary
                   cls
clus                  0   1
  ATF7IP2 MUTATED     0   6
  ATF7IP2 WILD-TYPE  35 660
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATF7IP2 MUTATED      0    6
  ATF7IP2 WILD-TYPE   35  660
                        clus
vv                       ATF7IP2 MUTATED ATF7IP2 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               6               660
[1] 2 2
[1] FALSE

Clustering(68) Variable = DNMT3A MUTATION ANALYSIS
D68V1, survival
                  sevent
clus2                0   1
  DNMT3A MUTATED    10   0
  DNMT3A WILD-TYPE 443 334
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              777 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
               0              334 
$`DNMT3A MUTATED`
TCGA-DU-6392 TCGA-DU-A5TS TCGA-FG-A710 TCGA-HT-7481 TCGA-HT-8564 TCGA-HW-8321 
      211.17        31.69        36.66        95.93        15.72        42.54 
TCGA-QH-A65X TCGA-S9-A7QW TCGA-S9-A89V TCGA-WH-A86K 
       15.85        15.06        18.71        13.32 

$`DNMT3A WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 
       15.02        16.44        22.26        28.54        10.78        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QX TCGA-S9-A7QY 
       20.02         8.19         2.04        20.68        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       31.59        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
        8.05        51.06        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  DNMT3A MUTATED DNMT3A WILD-TYPE 
           13.32             0.03 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
          211.17           182.33 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
            25.2             16.8 
[1] "13.3 - 211.2 (25.2)" "0.0 - 182.3 (16.8)" 
[1] "hr="     "9500000"
D68V2, continuous
D68V3, binary
                  cls
clus                 0   1
  DNMT3A MUTATED     0  10
  DNMT3A WILD-TYPE 278 502
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DNMT3A MUTATED      0   10
  DNMT3A WILD-TYPE  278  502
                        clus
vv                       DNMT3A MUTATED DNMT3A WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM             10              502
[1] 2 2
[1] FALSE
D68V4, binary
                  cls
clus                 0   1
  DNMT3A MUTATED     4   6
  DNMT3A WILD-TYPE 325 455
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DNMT3A MUTATED      4    6
  DNMT3A WILD-TYPE  325  455
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  FEMALE              4              325
  MALE                6              455
[1] 2 2
[1] FALSE
D68V5, binary
                  cls
clus                 0   1
  DNMT3A MUTATED     3   7
  DNMT3A WILD-TYPE 229 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DNMT3A MUTATED      3    7
  DNMT3A WILD-TYPE  229  501
     clus
vv    DNMT3A MUTATED DNMT3A WILD-TYPE
  NO               3              229
  YES              7              501
[1] 2 2
[1] FALSE
D68V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  DNMT3A MUTATED             6                             0                1
  DNMT3A WILD-TYPE         186                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  DNMT3A MUTATED                   3                   0
  DNMT3A WILD-TYPE               187                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  DNMT3A MUTATED                                 0
  DNMT3A WILD-TYPE                             265
D68V7, multiclass
                                 clus
vv                                DNMT3A MUTATED DNMT3A WILD-TYPE
  ASTROCYTOMA                                  6              186
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            3              187
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DNMT3A MUTATED                                  0     0
  DNMT3A WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  DNMT3A MUTATED                           1     9
  DNMT3A WILD-TYPE                        37   713
D68V8, multiclass
                                  clus
vv                                 DNMT3A MUTATED DNMT3A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         9              713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V9, binary
                  cls
clus                 0   1
  DNMT3A MUTATED     1   9
  DNMT3A WILD-TYPE  34 657
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DNMT3A MUTATED      1    9
  DNMT3A WILD-TYPE   34  657
                        clus
vv                       DNMT3A MUTATED DNMT3A WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              9              657
[1] 2 2
[1] FALSE

Clustering(69) Variable = PROKR2 MUTATION ANALYSIS
D69V1, survival
                  sevent
clus2                0   1
  PROKR2 MUTATED     2   7
  PROKR2 WILD-TYPE 451 327
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               9              778 
  PROKR2 MUTATED PROKR2 WILD-TYPE 
               7              327 
$`PROKR2 MUTATED`
TCGA-06-0743 TCGA-12-0615 TCGA-12-3652 TCGA-19-2620 TCGA-28-5209 TCGA-76-4925 
       26.40        15.35        34.92         4.87         2.53         4.80 
TCGA-DH-A7UT TCGA-DU-5852 TCGA-TM-A7CA 
       17.46         6.74        34.78 

$`PROKR2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 
        9.80         2.10        23.57        14.20        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       18.02        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3653 TCGA-12-5295 
       10.62        22.19        15.22        10.95        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 
        7.30         5.26        14.93        11.28        17.88        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
       14.33         7.50         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       54.25        23.21        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       17.46        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  PROKR2 MUTATED PROKR2 WILD-TYPE 
            2.53             0.03 
  PROKR2 MUTATED PROKR2 WILD-TYPE 
           34.92           211.17 
  PROKR2 MUTATED PROKR2 WILD-TYPE 
           15.35            16.83 
[1] "2.5 - 34.9 (15.3)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2.5"
D69V2, continuous
D69V3, binary
                  cls
clus                 0   1
  PROKR2 MUTATED     6   3
  PROKR2 WILD-TYPE 272 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR2 MUTATED      6    3
  PROKR2 WILD-TYPE  272  509
                        clus
vv                       PROKR2 MUTATED PROKR2 WILD-TYPE
  BRAIN                               6              272
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D69V4, binary
                  cls
clus                 0   1
  PROKR2 MUTATED     3   6
  PROKR2 WILD-TYPE 326 455
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR2 MUTATED      3    6
  PROKR2 WILD-TYPE  326  455
        clus
vv       PROKR2 MUTATED PROKR2 WILD-TYPE
  FEMALE              3              326
  MALE                6              455
[1] 2 2
[1] FALSE
D69V5, binary
                  cls
clus                 0   1
  PROKR2 MUTATED     2   7
  PROKR2 WILD-TYPE 230 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR2 MUTATED      2    7
  PROKR2 WILD-TYPE  230  501
     clus
vv    PROKR2 MUTATED PROKR2 WILD-TYPE
  NO               2              230
  YES              7              501
[1] 2 2
[1] FALSE
D69V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PROKR2 MUTATED             2                             0                1
  PROKR2 WILD-TYPE         190                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PROKR2 MUTATED                   0                   0
  PROKR2 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PROKR2 MUTATED                                 6
  PROKR2 WILD-TYPE                             259
D69V7, multiclass
                                 clus
vv                                PROKR2 MUTATED PROKR2 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              6              259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PROKR2 MUTATED                                  0     0
  PROKR2 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PROKR2 MUTATED                           0     9
  PROKR2 WILD-TYPE                        38   713
D69V8, multiclass
                                  clus
vv                                 PROKR2 MUTATED PROKR2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         9              713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V9, binary
                  cls
clus                 0   1
  PROKR2 MUTATED     0   8
  PROKR2 WILD-TYPE  35 658
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR2 MUTATED      0    8
  PROKR2 WILD-TYPE   35  658
                        clus
vv                       PROKR2 MUTATED PROKR2 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              8              658
[1] 2 2
[1] FALSE

Clustering(70) Variable = C10ORF76 MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  C10ORF76 MUTATED     2   2
  C10ORF76 WILD-TYPE 451 332
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
                 4                783 
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
                 2                332 
$`C10ORF76 MUTATED`
TCGA-19-5960 TCGA-DH-A7UR TCGA-DU-6392 TCGA-VW-A8FI 
       14.96        54.25       211.17         8.05 

$`C10ORF76 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       16.80        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US 
       30.21        42.05        27.81        17.19        17.19        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
              8.05               0.03 
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
            211.17             182.33 
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
            34.605             16.830 
[1] "8.1 - 211.2 (34.6)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2"  
D70V2, continuous
D70V3, binary
                    cls
clus                   0   1
  C10ORF76 MUTATED     1   3
  C10ORF76 WILD-TYPE 277 509
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF76 MUTATED      1    3
  C10ORF76 WILD-TYPE  277  509
                        clus
vv                       C10ORF76 MUTATED C10ORF76 WILD-TYPE
  BRAIN                                 1                277
  CENTRAL NERVOUS SYSTEM                3                509
[1] 2 2
[1] FALSE
D70V4, binary
                    cls
clus                   0   1
  C10ORF76 MUTATED     2   2
  C10ORF76 WILD-TYPE 327 459
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF76 MUTATED      2    2
  C10ORF76 WILD-TYPE  327  459
        clus
vv       C10ORF76 MUTATED C10ORF76 WILD-TYPE
  FEMALE                2                327
  MALE                  2                459
[1] 2 2
[1] FALSE
D70V5, binary
                    cls
clus                   0   1
  C10ORF76 MUTATED     0   4
  C10ORF76 WILD-TYPE 232 504
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF76 MUTATED      0    4
  C10ORF76 WILD-TYPE  232  504
     clus
vv    C10ORF76 MUTATED C10ORF76 WILD-TYPE
  NO                 0                232
  YES                4                504
[1] 2 2
[1] FALSE
D70V6, continuous
[1] "Remove cluster labels:" "C10ORF76 MUTATED"      
clus
  C10ORF76 MUTATED C10ORF76 WILD-TYPE 
                 2                508 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0126 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0128         TCGA-06-0129         TCGA-06-0130 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0139         TCGA-06-0140         TCGA-06-0141 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0151         TCGA-06-0154         TCGA-06-0155 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0157         TCGA-06-0158         TCGA-06-0165 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0167         TCGA-06-0168         TCGA-06-0169 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0178         TCGA-06-0184 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0188         TCGA-06-0192 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0195         TCGA-06-0214         TCGA-06-0216 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0238         TCGA-06-0240         TCGA-06-0241 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0646         TCGA-06-0648 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0750 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0878 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0879         TCGA-06-0881         TCGA-06-0882 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-0939         TCGA-06-1806         TCGA-06-2557 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2567         TCGA-06-2569 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5417 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5858         TCGA-06-5859 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6700 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0615         TCGA-12-0616 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0688 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0821         TCGA-12-1597 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3652 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5299         TCGA-12-5301 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0786         TCGA-14-0787 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0813 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0871 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-14-1456         TCGA-14-1823         TCGA-14-1825 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-14-4157 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-15-0742         TCGA-19-1390         TCGA-19-1790 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4068         TCGA-19-5947 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5958         TCGA-19-5959 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5139         TCGA-26-6173 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-26-6174         TCGA-27-1830         TCGA-27-1831 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1833         TCGA-27-1834 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1836         TCGA-27-1837 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-27-1838         TCGA-27-2518         TCGA-27-2519 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2527         TCGA-27-2528 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2509         TCGA-28-2513 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5211         TCGA-28-5213 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-28-5214         TCGA-28-5215         TCGA-28-5216 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-32-1982 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-32-1986         TCGA-32-2615         TCGA-32-2638 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-32-4213         TCGA-41-2571         TCGA-41-2573 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-41-2575         TCGA-74-6573         TCGA-74-6575 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6584 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4927 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-4932         TCGA-76-4934         TCGA-76-4935 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-CS-4938 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-CS-4941         TCGA-CS-4942         TCGA-CS-4943 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-CS-4944         TCGA-CS-5390         TCGA-CS-5393 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-CS-5395         TCGA-CS-5396         TCGA-CS-5397 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-CS-6186         TCGA-CS-6188         TCGA-CS-6290 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-CS-6665         TCGA-CS-6666         TCGA-CS-6667 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-CS-6668         TCGA-CS-6669         TCGA-DB-5274 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DB-A4XE         TCGA-DB-A64L         TCGA-DB-A64Q 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DB-A64R         TCGA-DB-A64S         TCGA-DB-A64U 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DB-A64V         TCGA-DB-A64W         TCGA-DB-A64X 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DB-A75L         TCGA-DB-A75O         TCGA-DH-5140 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DH-5142         TCGA-DH-5143         TCGA-DH-5144 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DH-A66B         TCGA-DH-A66D         TCGA-DH-A66F 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DH-A66G         TCGA-DH-A7UU         TCGA-DH-A7UV 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-5851         TCGA-DU-5852         TCGA-DU-5853 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-5854         TCGA-DU-5855         TCGA-DU-5870 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-5871         TCGA-DU-5874         TCGA-DU-6396 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-6401         TCGA-DU-6403         TCGA-DU-6404 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-6405         TCGA-DU-6407         TCGA-DU-6408 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-6410         TCGA-DU-7009         TCGA-DU-7011 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-7013         TCGA-DU-7015         TCGA-DU-7018 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-7019         TCGA-DU-7294         TCGA-DU-7298 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-7299         TCGA-DU-7300         TCGA-DU-7301 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-7302         TCGA-DU-7304         TCGA-DU-7306 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-7309         TCGA-DU-8158         TCGA-DU-8161 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-8162         TCGA-DU-8163         TCGA-DU-8165 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-8167         TCGA-DU-8168         TCGA-DU-A5TP 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-A5TR         TCGA-DU-A5TS         TCGA-DU-A5TU 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-A5TW         TCGA-DU-A6S2         TCGA-DU-A6S6 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-A6S7         TCGA-DU-A6S8         TCGA-DU-A76R 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-A7T6         TCGA-DU-A7T8         TCGA-DU-A7TA 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-A7TB         TCGA-DU-A7TC         TCGA-DU-A7TD 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-DU-A7TG         TCGA-E1-5302         TCGA-E1-5303 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-5304         TCGA-E1-5305         TCGA-E1-5307 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-5311         TCGA-E1-5318         TCGA-E1-5319 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-5322         TCGA-E1-A7YE         TCGA-E1-A7YH 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-A7YI         TCGA-E1-A7YJ         TCGA-E1-A7YK 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-A7YL         TCGA-E1-A7YM         TCGA-E1-A7YN 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-A7YO         TCGA-E1-A7YQ         TCGA-E1-A7YS 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-A7YV         TCGA-E1-A7YW         TCGA-E1-A7YY 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-E1-A7Z2         TCGA-E1-A7Z4         TCGA-E1-A7Z6 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-5963         TCGA-FG-5965         TCGA-FG-6688 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-6689         TCGA-FG-6690         TCGA-FG-6691 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-7636         TCGA-FG-7638         TCGA-FG-8181 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-8185         TCGA-FG-8186         TCGA-FG-8187 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-8188         TCGA-FG-8189         TCGA-FG-A4MT 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-A4MW         TCGA-FG-A4MX         TCGA-FG-A60J 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-A60L         TCGA-FG-A6J1         TCGA-FG-A6J3 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-FG-A711         TCGA-FG-A713         TCGA-FG-A87Q 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7468         TCGA-HT-7470         TCGA-HT-7475 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7477         TCGA-HT-7481         TCGA-HT-7482 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7485         TCGA-HT-7607         TCGA-HT-7609 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7611         TCGA-HT-7686         TCGA-HT-7689 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7692         TCGA-HT-7693         TCGA-HT-7694 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7854         TCGA-HT-7855         TCGA-HT-7856 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-7858         TCGA-HT-7875         TCGA-HT-7884 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-8013         TCGA-HT-8105         TCGA-HT-8113 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-8564         TCGA-HT-A4DV         TCGA-HT-A5R7 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-A5RA         TCGA-HT-A5RC         TCGA-HT-A615 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-A617         TCGA-HT-A618         TCGA-HT-A61A 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-HT-A61B         TCGA-HT-A61C         TCGA-HT-A74L 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-IK-7675         TCGA-KT-A74X         TCGA-KT-A7W1 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-P5-A5EU         TCGA-P5-A5EV         TCGA-P5-A5EW 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-P5-A5EX         TCGA-P5-A5F0         TCGA-P5-A5F2 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-P5-A5F4         TCGA-P5-A5F6         TCGA-P5-A731 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A65R         TCGA-QH-A65S         TCGA-QH-A65V 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A65X         TCGA-QH-A65Z         TCGA-QH-A6CS 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A6CU         TCGA-QH-A6CV         TCGA-QH-A6CW 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A6CX         TCGA-QH-A6CY         TCGA-QH-A6CZ 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A6X3         TCGA-QH-A6X4         TCGA-QH-A6X5 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A6X8         TCGA-QH-A6X9         TCGA-QH-A6XA 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-QH-A6XC         TCGA-QH-A86X         TCGA-QH-A870 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-RY-A83Y         TCGA-RY-A840         TCGA-RY-A845 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-RY-A847         TCGA-S9-A6TS         TCGA-S9-A6TU 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6TV         TCGA-S9-A6TW         TCGA-S9-A6TX 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6TY         TCGA-S9-A6TZ         TCGA-S9-A6U0 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6U1         TCGA-S9-A6U2         TCGA-S9-A6U5 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6U6         TCGA-S9-A6U8         TCGA-S9-A6UA 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6UB         TCGA-S9-A6WD         TCGA-S9-A6WE 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6WG         TCGA-S9-A6WH         TCGA-S9-A6WI 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6WL         TCGA-S9-A6WM         TCGA-S9-A6WN 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A6WO         TCGA-S9-A6WP         TCGA-S9-A6WQ 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7IQ         TCGA-S9-A7IS         TCGA-S9-A7IX 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7IY         TCGA-S9-A7IZ         TCGA-S9-A7J0 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7J1         TCGA-S9-A7J2         TCGA-S9-A7J3 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7QW         TCGA-S9-A7QX         TCGA-S9-A7QY 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7QZ         TCGA-S9-A7R1         TCGA-S9-A7R2 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7R3         TCGA-S9-A7R4         TCGA-S9-A7R7 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-S9-A7R8         TCGA-S9-A89V         TCGA-S9-A89Z 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A7C3         TCGA-TM-A7C4         TCGA-TM-A7C5 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A7CA         TCGA-TM-A7CF         TCGA-TM-A84B 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A84C         TCGA-TM-A84F         TCGA-TM-A84G 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A84H         TCGA-TM-A84I         TCGA-TM-A84J 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A84L         TCGA-TM-A84M         TCGA-TM-A84O 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A84Q         TCGA-TM-A84R         TCGA-TM-A84S 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TM-A84T         TCGA-TQ-A7RG         TCGA-TQ-A7RK 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TQ-A7RM         TCGA-TQ-A7RN         TCGA-TQ-A7RO 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TQ-A7RP         TCGA-TQ-A7RQ         TCGA-TQ-A7RR 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TQ-A7RS         TCGA-TQ-A7RU         TCGA-TQ-A7RV 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-TQ-A7RW         TCGA-TQ-A8XE         TCGA-VM-A8C8 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-VM-A8CA         TCGA-VM-A8CD         TCGA-VM-A8CE 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-VM-A8CF         TCGA-VM-A8CH         TCGA-WY-A858 
"C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" "C10ORF76 WILD-TYPE" 
        TCGA-WY-A859 
"C10ORF76 WILD-TYPE" 
                    vv
clus                 ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  C10ORF76 MUTATED             2                             0                0
  C10ORF76 WILD-TYPE         190                             9              130
                    vv
clus                 OLIGODENDROGLIOMA TREATED PRIMARY GBM
  C10ORF76 MUTATED                   1                   0
  C10ORF76 WILD-TYPE               189                   4
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  C10ORF76 MUTATED                                 1
  C10ORF76 WILD-TYPE                             264
D70V7, multiclass
                                 clus
vv                                C10ORF76 MUTATED C10ORF76 WILD-TYPE
  ASTROCYTOMA                                    2                190
  GLIOBLASTOMA MULTIFORME (GBM)                  0                  9
  OLIGOASTROCYTOMA                               0                130
  OLIGODENDROGLIOMA                              1                189
  TREATED PRIMARY GBM                            0                  4
  UNTREATED PRIMARY (DE NOVO) GBM                1                264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  C10ORF76 MUTATED                                  0     0
  C10ORF76 WILD-TYPE                                1    13
                    vv
clus                 BLACK OR AFRICAN AMERICAN WHITE
  C10ORF76 MUTATED                           0     4
  C10ORF76 WILD-TYPE                        38   718
D70V8, multiclass
                                  clus
vv                                 C10ORF76 MUTATED C10ORF76 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                0                  1
  ASIAN                                           0                 13
  BLACK OR AFRICAN AMERICAN                       0                 38
  WHITE                                           4                718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V9, binary
                    cls
clus                   0   1
  C10ORF76 MUTATED     0   4
  C10ORF76 WILD-TYPE  35 662
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF76 MUTATED      0    4
  C10ORF76 WILD-TYPE   35  662
                        clus
vv                       C10ORF76 MUTATED C10ORF76 WILD-TYPE
  HISPANIC OR LATINO                    0                 35
  NOT HISPANIC OR LATINO                4                662
[1] 2 2
[1] FALSE

Clustering(71) Variable = ZBTB20 MUTATION ANALYSIS
D71V1, survival
                  sevent
clus2                0   1
  ZBTB20 MUTATED    17   4
  ZBTB20 WILD-TYPE 436 330
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              766 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
               4              330 
$`ZBTB20 MUTATED`
TCGA-06-0132 TCGA-DB-A4XH TCGA-DB-A64V TCGA-DB-A64W TCGA-DH-A7US TCGA-DU-5849 
       25.35        31.63        29.23        14.40        23.21        14.56 
TCGA-DU-6392 TCGA-DU-6408 TCGA-E1-A7YS TCGA-FG-8187 TCGA-FG-A6J1 TCGA-HT-7605 
      211.17       114.08        15.32        20.09        16.44         4.57 
TCGA-HT-7608 TCGA-HT-7881 TCGA-HT-8563 TCGA-HT-8564 TCGA-HW-A5KJ TCGA-QH-A65R 
       22.06        35.47        28.27        15.72        10.55        15.16 
TCGA-RY-A847 TCGA-S9-A6WL TCGA-TQ-A7RV 
       30.67        31.10        61.41 

$`ZBTB20 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       22.72        33.67        12.95        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       37.45        33.57        72.95        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64X TCGA-DB-A75K 
        5.98        31.40        27.45        27.81        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        17.19        54.25        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       18.02        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YU 
       16.18        21.30        23.90        75.02        51.88         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8188 
       20.09        28.34        13.68        14.24        16.01        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J3 
       23.70        14.76        17.82        21.53        15.02        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
       17.29         3.16        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 
        0.33         0.13         3.68         5.33         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       13.74         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       40.01        42.54         6.18        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65S TCGA-QH-A65V 
       19.20         3.45         2.37         4.41         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-S9-A6TS TCGA-S9-A6TU 
        9.90        28.08         2.07        19.59        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RW 
       31.20        30.05        26.14        25.87        33.93        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
            4.57             0.03 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
          211.17           182.33 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
          23.210           16.715 
[1] "4.6 - 211.2 (23.2)" "0.0 - 182.3 (16.7)"
[1] "hr=" "3.2"
D71V2, continuous
D71V3, binary
                  cls
clus                 0   1
  ZBTB20 MUTATED     1  21
  ZBTB20 WILD-TYPE 277 491
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB20 MUTATED      1   21
  ZBTB20 WILD-TYPE  277  491
                        clus
vv                       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM             21              491
[1] 2 2
[1] FALSE
D71V4, binary
                  cls
clus                 0   1
  ZBTB20 MUTATED     7  15
  ZBTB20 WILD-TYPE 322 446
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB20 MUTATED      7   15
  ZBTB20 WILD-TYPE  322  446
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  FEMALE              7              322
  MALE               15              446
[1] 2 2
[1] FALSE
D71V5, binary
                  cls
clus                 0   1
  ZBTB20 MUTATED    11  10
  ZBTB20 WILD-TYPE 221 498
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB20 MUTATED     11   10
  ZBTB20 WILD-TYPE  221  498
     clus
vv    ZBTB20 MUTATED ZBTB20 WILD-TYPE
  NO              11              221
  YES             10              498
[1] 2 2
[1] FALSE
D71V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZBTB20 MUTATED             5                             0                4
  ZBTB20 WILD-TYPE         187                             9              126
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZBTB20 MUTATED                  12                   0
  ZBTB20 WILD-TYPE               178                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  ZBTB20 MUTATED                                 1
  ZBTB20 WILD-TYPE                             264
D71V7, multiclass
                                 clus
vv                                ZBTB20 MUTATED ZBTB20 WILD-TYPE
  ASTROCYTOMA                                  5              187
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             4              126
  OLIGODENDROGLIOMA                           12              178
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZBTB20 MUTATED                                  0     0
  ZBTB20 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZBTB20 MUTATED                           3    19
  ZBTB20 WILD-TYPE                        35   703
D71V8, multiclass
                                  clus
vv                                 ZBTB20 MUTATED ZBTB20 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     3               35
  WHITE                                        19              703
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V9, binary
                  cls
clus                 0   1
  ZBTB20 MUTATED     2  19
  ZBTB20 WILD-TYPE  33 647
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB20 MUTATED      2   19
  ZBTB20 WILD-TYPE   33  647
                        clus
vv                       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  HISPANIC OR LATINO                  2               33
  NOT HISPANIC OR LATINO             19              647
[1] 2 2
[1] FALSE

Clustering(72) Variable = KRT15 MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2               0   1
  KRT15 MUTATED     4   3
  KRT15 WILD-TYPE 449 331
  KRT15 MUTATED KRT15 WILD-TYPE 
              7             780 
  KRT15 MUTATED KRT15 WILD-TYPE 
              3             331 
$`KRT15 MUTATED`
TCGA-02-0047 TCGA-06-0879 TCGA-HT-7608 TCGA-QH-A6X9 TCGA-S9-A7R2 TCGA-TM-A7C4 
       14.73        40.41        22.06         1.91        10.39        48.33 
TCGA-TM-A84M 
       24.79 

$`KRT15 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
        7.17        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6XA TCGA-QH-A6XC 
       10.29        14.53        16.34        16.73        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       54.77        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  KRT15 MUTATED KRT15 WILD-TYPE 
           1.91            0.03 
  KRT15 MUTATED KRT15 WILD-TYPE 
          48.33          211.17 
  KRT15 MUTATED KRT15 WILD-TYPE 
         22.060          16.815 
[1] "1.9 - 48.3 (22.1)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1"  
D72V2, continuous
D72V3, binary
                 cls
clus                0   1
  KRT15 MUTATED     2   6
  KRT15 WILD-TYPE 276 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT15 MUTATED      2    6
  KRT15 WILD-TYPE  276  506
                        clus
vv                       KRT15 MUTATED KRT15 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             6             506
[1] 2 2
[1] FALSE
D72V4, binary
                 cls
clus                0   1
  KRT15 MUTATED     2   6
  KRT15 WILD-TYPE 327 455
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT15 MUTATED      2    6
  KRT15 WILD-TYPE  327  455
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  FEMALE             2             327
  MALE               6             455
[1] 2 2
[1] FALSE
D72V5, binary
                 cls
clus                0   1
  KRT15 MUTATED     4   4
  KRT15 WILD-TYPE 228 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT15 MUTATED      4    4
  KRT15 WILD-TYPE  228  504
     clus
vv    KRT15 MUTATED KRT15 WILD-TYPE
  NO              4             228
  YES             4             504
[1] 2 2
[1] FALSE
D72V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KRT15 MUTATED             3                             0                1
  KRT15 WILD-TYPE         189                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KRT15 MUTATED                   2                   0
  KRT15 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  KRT15 MUTATED                                 2
  KRT15 WILD-TYPE                             263
D72V7, multiclass
                                 clus
vv                                KRT15 MUTATED KRT15 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KRT15 MUTATED                                  0     0
  KRT15 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  KRT15 MUTATED                           1     7
  KRT15 WILD-TYPE                        37   715
D72V8, multiclass
                                  clus
vv                                 KRT15 MUTATED KRT15 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V9, binary
                 cls
clus                0   1
  KRT15 MUTATED     0   8
  KRT15 WILD-TYPE  35 658
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT15 MUTATED      0    8
  KRT15 WILD-TYPE   35  658
                        clus
vv                       KRT15 MUTATED KRT15 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             8             658
[1] 2 2
[1] FALSE

Clustering(73) Variable = G6PC MUTATION ANALYSIS
D73V1, survival
                sevent
clus2              0   1
  G6PC MUTATED     3   3
  G6PC WILD-TYPE 450 331
  G6PC MUTATED G6PC WILD-TYPE 
             6            781 
  G6PC MUTATED G6PC WILD-TYPE 
             3            331 
$`G6PC MUTATED`
TCGA-32-5222 TCGA-DU-6392 TCGA-DU-7292 TCGA-HT-8105 TCGA-HT-A74H TCGA-IK-7675 
       19.23       211.17         7.96         6.25         2.43        19.00 

$`G6PC WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.86        10.85         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       26.30        10.36        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  G6PC MUTATED G6PC WILD-TYPE 
          2.43           0.03 
  G6PC MUTATED G6PC WILD-TYPE 
        211.17         182.33 
  G6PC MUTATED G6PC WILD-TYPE 
         13.48          16.83 
[1] "2.4 - 211.2 (13.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.2"
D73V2, continuous
D73V3, binary
                cls
clus               0   1
  G6PC MUTATED     1   6
  G6PC WILD-TYPE 277 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  G6PC MUTATED      1    6
  G6PC WILD-TYPE  277  506
                        clus
vv                       G6PC MUTATED G6PC WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            6            506
[1] 2 2
[1] FALSE
D73V4, binary
                cls
clus               0   1
  G6PC MUTATED     2   5
  G6PC WILD-TYPE 327 456
[1] "tbl2"
                cls
clus             [,1] [,2]
  G6PC MUTATED      2    5
  G6PC WILD-TYPE  327  456
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  FEMALE            2            327
  MALE              5            456
[1] 2 2
[1] FALSE
D73V5, binary
                cls
clus               0   1
  G6PC MUTATED     1   6
  G6PC WILD-TYPE 231 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  G6PC MUTATED      1    6
  G6PC WILD-TYPE  231  502
     clus
vv    G6PC MUTATED G6PC WILD-TYPE
  NO             1            231
  YES            6            502
[1] 2 2
[1] FALSE
D73V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  G6PC MUTATED             3                             0                0
  G6PC WILD-TYPE         189                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  G6PC MUTATED                   3                   0
  G6PC WILD-TYPE               187                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  G6PC MUTATED                                 1
  G6PC WILD-TYPE                             264
D73V7, multiclass
                                 clus
vv                                G6PC MUTATED G6PC WILD-TYPE
  ASTROCYTOMA                                3            189
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          3            187
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  G6PC MUTATED                                  0     0
  G6PC WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  G6PC MUTATED                           0     7
  G6PC WILD-TYPE                        38   715
D73V8, multiclass
                                  clus
vv                                 G6PC MUTATED G6PC WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       7            715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V9, binary
                cls
clus               0   1
  G6PC MUTATED     2   5
  G6PC WILD-TYPE  33 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  G6PC MUTATED      2    5
  G6PC WILD-TYPE   33  661
                        clus
vv                       G6PC MUTATED G6PC WILD-TYPE
  HISPANIC OR LATINO                2             33
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(74) Variable = SERPING1 MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  SERPING1 MUTATED     3   1
  SERPING1 WILD-TYPE 450 333
  SERPING1 MUTATED SERPING1 WILD-TYPE 
                 4                783 
  SERPING1 MUTATED SERPING1 WILD-TYPE 
                 1                333 
$`SERPING1 MUTATED`
TCGA-74-6575 TCGA-E1-A7YM TCGA-HT-7684 TCGA-HT-8105 
       20.91        21.30         6.05         6.25 

$`SERPING1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       15.12        12.46         3.45         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       12.43        16.18        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7686 TCGA-HT-7687 
        0.16        16.24         0.76        44.68        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       33.01        12.23         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  SERPING1 MUTATED SERPING1 WILD-TYPE 
              6.05               0.03 
  SERPING1 MUTATED SERPING1 WILD-TYPE 
             21.30             211.17 
  SERPING1 MUTATED SERPING1 WILD-TYPE 
             13.58              16.83 
[1] "6.0 - 21.3 (13.6)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.1"
D74V2, continuous
D74V3, binary
                    cls
clus                   0   1
  SERPING1 MUTATED     1   3
  SERPING1 WILD-TYPE 277 509
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPING1 MUTATED      1    3
  SERPING1 WILD-TYPE  277  509
                        clus
vv                       SERPING1 MUTATED SERPING1 WILD-TYPE
  BRAIN                                 1                277
  CENTRAL NERVOUS SYSTEM                3                509
[1] 2 2
[1] FALSE
D74V4, binary
                    cls
clus                   0   1
  SERPING1 MUTATED     1   3
  SERPING1 WILD-TYPE 328 458
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPING1 MUTATED      1    3
  SERPING1 WILD-TYPE  328  458
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  FEMALE                1                328
  MALE                  3                458
[1] 2 2
[1] FALSE
D74V5, binary
                    cls
clus                   0   1
  SERPING1 MUTATED     1   3
  SERPING1 WILD-TYPE 231 505
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPING1 MUTATED      1    3
  SERPING1 WILD-TYPE  231  505
     clus
vv    SERPING1 MUTATED SERPING1 WILD-TYPE
  NO                 1                231
  YES                3                505
[1] 2 2
[1] FALSE
D74V6, continuous
                    vv
clus                 ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SERPING1 MUTATED             1                             0                1
  SERPING1 WILD-TYPE         191                             9              129
                    vv
clus                 OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SERPING1 MUTATED                   1                   0
  SERPING1 WILD-TYPE               189                   4
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  SERPING1 MUTATED                                 1
  SERPING1 WILD-TYPE                             264
D74V7, multiclass
                                 clus
vv                                SERPING1 MUTATED SERPING1 WILD-TYPE
  ASTROCYTOMA                                    1                191
  GLIOBLASTOMA MULTIFORME (GBM)                  0                  9
  OLIGOASTROCYTOMA                               1                129
  OLIGODENDROGLIOMA                              1                189
  TREATED PRIMARY GBM                            0                  4
  UNTREATED PRIMARY (DE NOVO) GBM                1                264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SERPING1 MUTATED                                  0     0
  SERPING1 WILD-TYPE                                1    13
                    vv
clus                 BLACK OR AFRICAN AMERICAN WHITE
  SERPING1 MUTATED                           0     3
  SERPING1 WILD-TYPE                        38   719
D74V8, multiclass
                                  clus
vv                                 SERPING1 MUTATED SERPING1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                0                  1
  ASIAN                                           0                 13
  BLACK OR AFRICAN AMERICAN                       0                 38
  WHITE                                           3                719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V9, binary
                    cls
clus                   0   1
  SERPING1 MUTATED     0   3
  SERPING1 WILD-TYPE  35 663
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPING1 MUTATED      0    3
  SERPING1 WILD-TYPE   35  663
                        clus
vv                       SERPING1 MUTATED SERPING1 WILD-TYPE
  HISPANIC OR LATINO                    0                 35
  NOT HISPANIC OR LATINO                3                663
[1] 2 2
[1] FALSE

Clustering(75) Variable = ZDHHC4 MUTATION ANALYSIS
D75V1, survival
                  sevent
clus2                0   1
  ZDHHC4 MUTATED     1   2
  ZDHHC4 WILD-TYPE 452 332
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
               3              784 
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
               2              332 
$`ZDHHC4 MUTATED`
TCGA-41-5651 TCGA-76-6286 TCGA-DU-6392 
       15.12        20.98       211.17 

$`ZDHHC4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06         8.35         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
           15.12             0.03 
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
          211.17           182.33 
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
          20.980           16.815 
[1] "15.1 - 211.2 (21.0)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "1.7"
D75V2, continuous
D75V3, binary
                  cls
clus                 0   1
  ZDHHC4 MUTATED     2   1
  ZDHHC4 WILD-TYPE 276 511
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZDHHC4 MUTATED      2    1
  ZDHHC4 WILD-TYPE  276  511
                        clus
vv                       ZDHHC4 MUTATED ZDHHC4 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              1              511
[1] 2 2
[1] FALSE
D75V4, binary
                  cls
clus                 0   1
  ZDHHC4 MUTATED     2   1
  ZDHHC4 WILD-TYPE 327 460
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZDHHC4 MUTATED      2    1
  ZDHHC4 WILD-TYPE  327  460
        clus
vv       ZDHHC4 MUTATED ZDHHC4 WILD-TYPE
  FEMALE              2              327
  MALE                1              460
[1] 2 2
[1] FALSE
D75V5, binary
                  cls
clus                 0   1
  ZDHHC4 MUTATED     0   3
  ZDHHC4 WILD-TYPE 232 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZDHHC4 MUTATED      0    3
  ZDHHC4 WILD-TYPE  232  505
     clus
vv    ZDHHC4 MUTATED ZDHHC4 WILD-TYPE
  NO               0              232
  YES              3              505
[1] 2 2
[1] FALSE
D75V6, continuous
[1] "Remove cluster labels:" "ZDHHC4 MUTATED"        
clus
  ZDHHC4 MUTATED ZDHHC4 WILD-TYPE 
               1              509 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0126       TCGA-06-0128       TCGA-06-0129       TCGA-06-0130 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0139       TCGA-06-0140       TCGA-06-0141       TCGA-06-0151 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0167       TCGA-06-0168       TCGA-06-0169 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0185 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0188       TCGA-06-0192       TCGA-06-0195       TCGA-06-0214 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0238       TCGA-06-0240       TCGA-06-0241 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0646       TCGA-06-0648       TCGA-06-0686 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0878 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-5408       TCGA-06-5410       TCGA-06-5411       TCGA-06-5412 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-5413       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-5418       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6695       TCGA-06-6697 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-06-6700       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5299       TCGA-12-5301 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-14-0740       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-4157       TCGA-15-0742       TCGA-19-1390 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5954       TCGA-19-5958 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5139       TCGA-26-6173 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-2502       TCGA-28-2509 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5219       TCGA-28-5220 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-2615       TCGA-32-2638 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-32-4213       TCGA-41-2571       TCGA-41-2573       TCGA-41-2575 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6661       TCGA-76-6662 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-76-6663       TCGA-76-6664       TCGA-81-5910       TCGA-CS-4938 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-CS-4941       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5395       TCGA-CS-5396 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6290 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-CS-6665       TCGA-CS-6666       TCGA-CS-6667       TCGA-CS-6668 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-CS-6669       TCGA-DB-5274       TCGA-DB-A4XE       TCGA-DB-A64L 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DB-A64Q       TCGA-DB-A64R       TCGA-DB-A64S       TCGA-DB-A64U 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DB-A64V       TCGA-DB-A64W       TCGA-DB-A64X       TCGA-DB-A75L 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DB-A75O       TCGA-DH-5140       TCGA-DH-5142       TCGA-DH-5143 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DH-5144       TCGA-DH-A66B       TCGA-DH-A66D       TCGA-DH-A66F 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DH-A66G       TCGA-DH-A7UR       TCGA-DH-A7UU       TCGA-DH-A7UV 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-5851       TCGA-DU-5852       TCGA-DU-5853       TCGA-DU-5854 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-5855       TCGA-DU-5870       TCGA-DU-5871       TCGA-DU-5874 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-6396       TCGA-DU-6401       TCGA-DU-6403       TCGA-DU-6404 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-6405       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7011       TCGA-DU-7013       TCGA-DU-7015 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7294       TCGA-DU-7298 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-7299       TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-7304       TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-8161       TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8165 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TU       TCGA-DU-A5TW       TCGA-DU-A6S2 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-A6S6       TCGA-DU-A6S7       TCGA-DU-A6S8       TCGA-DU-A76R 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-A7T6       TCGA-DU-A7T8       TCGA-DU-A7TA       TCGA-DU-A7TB 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-DU-A7TC       TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-E1-5302 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-A7YE       TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-A7YK       TCGA-E1-A7YL       TCGA-E1-A7YM       TCGA-E1-A7YN 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-A7YO       TCGA-E1-A7YQ       TCGA-E1-A7YS       TCGA-E1-A7YV 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2       TCGA-E1-A7Z4 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-E1-A7Z6       TCGA-FG-5963       TCGA-FG-5965       TCGA-FG-6688 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-FG-7638       TCGA-FG-8181       TCGA-FG-8185       TCGA-FG-8186 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-A4MT 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-FG-A60L 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-FG-A6J1       TCGA-FG-A6J3       TCGA-FG-A711       TCGA-FG-A713 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-FG-A87Q       TCGA-HT-7468       TCGA-HT-7470       TCGA-HT-7475 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7485 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7609       TCGA-HT-7611       TCGA-HT-7686 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-7689       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7858 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7884       TCGA-HT-8013       TCGA-HT-8105 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-8113       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R7 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-A5RA       TCGA-HT-A5RC       TCGA-HT-A615       TCGA-HT-A617 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-A618       TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A61C 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-HT-A74L       TCGA-IK-7675       TCGA-KT-A74X       TCGA-KT-A7W1 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-P5-A5F0       TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-P5-A731       TCGA-QH-A65R       TCGA-QH-A65S       TCGA-QH-A65V 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-QH-A6CZ       TCGA-QH-A6X3       TCGA-QH-A6X4       TCGA-QH-A6X5 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-QH-A6X8       TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-QH-A86X       TCGA-QH-A870       TCGA-RY-A83Y       TCGA-RY-A840 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-RY-A845       TCGA-RY-A847       TCGA-S9-A6TS       TCGA-S9-A6TU 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A6TV       TCGA-S9-A6TW       TCGA-S9-A6TX       TCGA-S9-A6TY 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A6TZ       TCGA-S9-A6U0       TCGA-S9-A6U1       TCGA-S9-A6U2 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U8       TCGA-S9-A6UA 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A6UB       TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A6WH       TCGA-S9-A6WI       TCGA-S9-A6WL       TCGA-S9-A6WM 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WO       TCGA-S9-A6WP       TCGA-S9-A6WQ 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A7IQ       TCGA-S9-A7IS       TCGA-S9-A7IX       TCGA-S9-A7IY 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A7IZ       TCGA-S9-A7J0       TCGA-S9-A7J1       TCGA-S9-A7J2 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A7J3       TCGA-S9-A7QW       TCGA-S9-A7QX       TCGA-S9-A7QY 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A7QZ       TCGA-S9-A7R1       TCGA-S9-A7R2       TCGA-S9-A7R3 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A7R4       TCGA-S9-A7R7       TCGA-S9-A7R8       TCGA-S9-A89V 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-S9-A89Z       TCGA-TM-A7C3       TCGA-TM-A7C4       TCGA-TM-A7C5 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TM-A7CA       TCGA-TM-A7CF       TCGA-TM-A84B       TCGA-TM-A84C 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TM-A84F       TCGA-TM-A84G       TCGA-TM-A84H       TCGA-TM-A84I 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TM-A84J       TCGA-TM-A84L       TCGA-TM-A84M       TCGA-TM-A84O 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TM-A84Q       TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TM-A84T 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TQ-A7RG       TCGA-TQ-A7RK       TCGA-TQ-A7RM       TCGA-TQ-A7RN 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TQ-A7RO       TCGA-TQ-A7RP       TCGA-TQ-A7RQ       TCGA-TQ-A7RR 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TQ-A7RS       TCGA-TQ-A7RU       TCGA-TQ-A7RV       TCGA-TQ-A7RW 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-TQ-A8XE       TCGA-VM-A8C8       TCGA-VM-A8CA       TCGA-VM-A8CD 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-VM-A8CE       TCGA-VM-A8CF       TCGA-VM-A8CH       TCGA-WY-A858 
"ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" "ZDHHC4 WILD-TYPE" 
      TCGA-WY-A859 
"ZDHHC4 WILD-TYPE" 
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZDHHC4 MUTATED             1                             0                0
  ZDHHC4 WILD-TYPE         191                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZDHHC4 MUTATED                   0                   0
  ZDHHC4 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  ZDHHC4 MUTATED                                 2
  ZDHHC4 WILD-TYPE                             263
D75V7, multiclass
                                 clus
vv                                ZDHHC4 MUTATED ZDHHC4 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZDHHC4 MUTATED                                  0     0
  ZDHHC4 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZDHHC4 MUTATED                           1     2
  ZDHHC4 WILD-TYPE                        37   720
D75V8, multiclass
                                  clus
vv                                 ZDHHC4 MUTATED ZDHHC4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         2              720
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V9, binary
                  cls
clus                 0   1
  ZDHHC4 MUTATED     0   3
  ZDHHC4 WILD-TYPE  35 663
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZDHHC4 MUTATED      0    3
  ZDHHC4 WILD-TYPE   35  663
                        clus
vv                       ZDHHC4 MUTATED ZDHHC4 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              3              663
[1] 2 2
[1] FALSE

Clustering(76) Variable = CPEB4 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2               0   1
  CPEB4 MUTATED     5   2
  CPEB4 WILD-TYPE 448 332
  CPEB4 MUTATED CPEB4 WILD-TYPE 
              7             780 
  CPEB4 MUTATED CPEB4 WILD-TYPE 
              2             332 
$`CPEB4 MUTATED`
TCGA-06-0747 TCGA-DB-5276 TCGA-DU-6392 TCGA-DU-7018 TCGA-DU-7019 TCGA-R8-A6MO 
        2.70        72.92       211.17        30.67        26.30        32.65 
TCGA-W9-A837 
       51.06 

$`CPEB4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7292 
      105.21         6.54         8.84        90.77        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       12.99        88.83        94.03        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-WH-A86K TCGA-WY-A858 
       37.05        16.01        23.21         8.05        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  CPEB4 MUTATED CPEB4 WILD-TYPE 
           2.70            0.03 
  CPEB4 MUTATED CPEB4 WILD-TYPE 
         211.17          182.33 
  CPEB4 MUTATED CPEB4 WILD-TYPE 
         32.650          16.715 
[1] "2.7 - 211.2 (32.6)" "0.0 - 182.3 (16.7)"
[1] "hr=" "3.2"
D76V2, continuous
D76V3, binary
                 cls
clus                0   1
  CPEB4 MUTATED     1   6
  CPEB4 WILD-TYPE 277 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPEB4 MUTATED      1    6
  CPEB4 WILD-TYPE  277  506
                        clus
vv                       CPEB4 MUTATED CPEB4 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             6             506
[1] 2 2
[1] FALSE
D76V4, binary
                 cls
clus                0   1
  CPEB4 MUTATED     3   4
  CPEB4 WILD-TYPE 326 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPEB4 MUTATED      3    4
  CPEB4 WILD-TYPE  326  457
        clus
vv       CPEB4 MUTATED CPEB4 WILD-TYPE
  FEMALE             3             326
  MALE               4             457
[1] 2 2
[1] FALSE
D76V5, binary
                 cls
clus                0   1
  CPEB4 MUTATED     3   4
  CPEB4 WILD-TYPE 229 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPEB4 MUTATED      3    4
  CPEB4 WILD-TYPE  229  504
     clus
vv    CPEB4 MUTATED CPEB4 WILD-TYPE
  NO              3             229
  YES             4             504
[1] 2 2
[1] FALSE
D76V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CPEB4 MUTATED             1                             0                2
  CPEB4 WILD-TYPE         191                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CPEB4 MUTATED                   3                   0
  CPEB4 WILD-TYPE               187                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  CPEB4 MUTATED                                 1
  CPEB4 WILD-TYPE                             264
D76V7, multiclass
                                 clus
vv                                CPEB4 MUTATED CPEB4 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           3             187
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CPEB4 MUTATED                                  0     1
  CPEB4 WILD-TYPE                                1    12
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  CPEB4 MUTATED                           0     6
  CPEB4 WILD-TYPE                        38   716
D76V8, multiclass
                                  clus
vv                                 CPEB4 MUTATED CPEB4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              12
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        6             716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V9, binary
                 cls
clus                0   1
  CPEB4 MUTATED     0   7
  CPEB4 WILD-TYPE  35 659
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPEB4 MUTATED      0    7
  CPEB4 WILD-TYPE   35  659
                        clus
vv                       CPEB4 MUTATED CPEB4 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             7             659
[1] 2 2
[1] FALSE

Clustering(77) Variable = EEF1A1 MUTATION ANALYSIS
D77V1, survival
                  sevent
clus2                0   1
  EEF1A1 MUTATED     2   6
  EEF1A1 WILD-TYPE 451 328
  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
               8              779 
  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
               6              328 
$`EEF1A1 MUTATED`
TCGA-06-0747 TCGA-14-0786 TCGA-19-5959 TCGA-32-1982 TCGA-DH-A669 TCGA-DU-6392 
        2.70        23.05        16.80         4.67        30.21       211.17 
TCGA-HT-7684 TCGA-HT-A5RC 
        6.05         5.33 

$`EEF1A1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 
        4.73        12.10         1.78        14.07        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
       19.50         1.18        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       63.88        46.06         8.02        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 
        0.13        20.22         0.07        27.35         0.10         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
            2.70             0.03 
  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
          211.17           182.33 
  EEF1A1 MUTATED EEF1A1 WILD-TYPE 
          11.425           16.830 
[1] "2.7 - 211.2 (11.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.4"
D77V2, continuous
D77V3, binary
                  cls
clus                 0   1
  EEF1A1 MUTATED     4   4
  EEF1A1 WILD-TYPE 274 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EEF1A1 MUTATED      4    4
  EEF1A1 WILD-TYPE  274  508
                        clus
vv                       EEF1A1 MUTATED EEF1A1 WILD-TYPE
  BRAIN                               4              274
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D77V4, binary
                  cls
clus                 0   1
  EEF1A1 MUTATED     5   3
  EEF1A1 WILD-TYPE 324 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EEF1A1 MUTATED      5    3
  EEF1A1 WILD-TYPE  324  458
        clus
vv       EEF1A1 MUTATED EEF1A1 WILD-TYPE
  FEMALE              5              324
  MALE                3              458
[1] 2 2
[1] FALSE
D77V5, binary
                  cls
clus                 0   1
  EEF1A1 MUTATED     2   5
  EEF1A1 WILD-TYPE 230 503
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EEF1A1 MUTATED      2    5
  EEF1A1 WILD-TYPE  230  503
     clus
vv    EEF1A1 MUTATED EEF1A1 WILD-TYPE
  NO               2              230
  YES              5              503
[1] 2 2
[1] FALSE
D77V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  EEF1A1 MUTATED             2                             0                1
  EEF1A1 WILD-TYPE         190                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  EEF1A1 MUTATED                   1                   0
  EEF1A1 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  EEF1A1 MUTATED                                 4
  EEF1A1 WILD-TYPE                             261
D77V7, multiclass
                                 clus
vv                                EEF1A1 MUTATED EEF1A1 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              4              261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  EEF1A1 MUTATED                                  0     0
  EEF1A1 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  EEF1A1 MUTATED                           0     8
  EEF1A1 WILD-TYPE                        38   714
D77V8, multiclass
                                  clus
vv                                 EEF1A1 MUTATED EEF1A1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         8              714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V9, binary
                  cls
clus                 0   1
  EEF1A1 MUTATED     0   7
  EEF1A1 WILD-TYPE  35 659
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EEF1A1 MUTATED      0    7
  EEF1A1 WILD-TYPE   35  659
                        clus
vv                       EEF1A1 MUTATED EEF1A1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              7              659
[1] 2 2
[1] FALSE

Clustering(78) Variable = PDHA1 MUTATION ANALYSIS
D78V1, survival
                 sevent
clus2               0   1
  PDHA1 MUTATED     3   3
  PDHA1 WILD-TYPE 450 331
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              6             781 
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              3             331 
$`PDHA1 MUTATED`
TCGA-19-2625 TCGA-DB-A4XH TCGA-DU-5854 TCGA-E1-5318 TCGA-E1-5322 TCGA-QH-A6X5 
        4.08        31.63         8.45        78.21       130.78        16.34 

$`PDHA1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       37.45        33.57        72.95        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
        6.74        13.38         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       57.93       134.27        95.57        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  PDHA1 MUTATED PDHA1 WILD-TYPE 
           4.08            0.03 
  PDHA1 MUTATED PDHA1 WILD-TYPE 
         130.78          211.17 
  PDHA1 MUTATED PDHA1 WILD-TYPE 
         23.985          16.830 
[1] "4.1 - 130.8 (24.0)" "0.0 - 211.2 (16.8)"
[1] "hr=" "1.3"
D78V2, continuous
D78V3, binary
                 cls
clus                0   1
  PDHA1 MUTATED     1   5
  PDHA1 WILD-TYPE 277 507
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDHA1 MUTATED      1    5
  PDHA1 WILD-TYPE  277  507
                        clus
vv                       PDHA1 MUTATED PDHA1 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             5             507
[1] 2 2
[1] FALSE
D78V4, binary
                 cls
clus                0   1
  PDHA1 MUTATED     6   0
  PDHA1 WILD-TYPE 323 461
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDHA1 MUTATED      6    0
  PDHA1 WILD-TYPE  323  461
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  FEMALE             6             323
  MALE               0             461
[1] 2 2
[1] FALSE
D78V5, binary
                 cls
clus                0   1
  PDHA1 MUTATED     3   3
  PDHA1 WILD-TYPE 229 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDHA1 MUTATED      3    3
  PDHA1 WILD-TYPE  229  505
     clus
vv    PDHA1 MUTATED PDHA1 WILD-TYPE
  NO              3             229
  YES             3             505
[1] 2 2
[1] FALSE
D78V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PDHA1 MUTATED             1                             0                3
  PDHA1 WILD-TYPE         191                             9              127
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PDHA1 MUTATED                   1                   0
  PDHA1 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  PDHA1 MUTATED                                 1
  PDHA1 WILD-TYPE                             264
D78V7, multiclass
                                 clus
vv                                PDHA1 MUTATED PDHA1 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            3             127
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PDHA1 MUTATED                                  0     0
  PDHA1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  PDHA1 MUTATED                           0     6
  PDHA1 WILD-TYPE                        38   716
D78V8, multiclass
                                  clus
vv                                 PDHA1 MUTATED PDHA1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        6             716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D78V9, binary
                 cls
clus                0   1
  PDHA1 MUTATED     0   6
  PDHA1 WILD-TYPE  35 660
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDHA1 MUTATED      0    6
  PDHA1 WILD-TYPE   35  660
                        clus
vv                       PDHA1 MUTATED PDHA1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             6             660
[1] 2 2
[1] FALSE

Clustering(79) Variable = FAM123C MUTATION ANALYSIS
D79V1, survival
                   sevent
clus2                 0   1
  FAM123C MUTATED     3   8
  FAM123C WILD-TYPE 450 326
  FAM123C MUTATED FAM123C WILD-TYPE 
               11               776 
  FAM123C MUTATED FAM123C WILD-TYPE 
                8               326 
$`FAM123C MUTATED`
TCGA-06-0169 TCGA-06-0192 TCGA-06-0209 TCGA-06-0644 TCGA-06-5413 TCGA-14-1825 
        3.29        38.96         7.63        12.62         8.81         7.63 
TCGA-76-4929 TCGA-DB-5277 TCGA-DU-7306 TCGA-HT-7479 TCGA-HW-A5KK 
        3.65        50.86        41.98        40.34        12.76 

$`FAM123C WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       11.41        19.66         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0195 TCGA-06-0213 TCGA-06-0214 
       73.84        44.58        15.42         7.40         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        5.75         5.75         9.80         2.10        23.57        14.20 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       26.40        46.88         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       20.78        26.76        13.61        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
        4.54         8.98         8.55         5.10         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       58.78        40.96        17.85         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 
        7.50         4.80         4.54        17.59         3.09         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        72.92        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8158 
       62.01        25.91        60.30        23.31         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7480 TCGA-HT-7481 
       17.42         6.54        24.26         6.38        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KL TCGA-HW-A5KM 
       40.01        42.54         6.18        10.55        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  FAM123C MUTATED FAM123C WILD-TYPE 
             3.29              0.03 
  FAM123C MUTATED FAM123C WILD-TYPE 
            50.86            211.17 
  FAM123C MUTATED FAM123C WILD-TYPE 
            12.62             16.88 
[1] "3.3 - 50.9 (12.6)"  "0.0 - 211.2 (16.9)"
[1] "hr=" "2"  
D79V2, continuous
D79V3, binary
                   cls
clus                  0   1
  FAM123C MUTATED     7   4
  FAM123C WILD-TYPE 271 508
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123C MUTATED      7    4
  FAM123C WILD-TYPE  271  508
                        clus
vv                       FAM123C MUTATED FAM123C WILD-TYPE
  BRAIN                                7               271
  CENTRAL NERVOUS SYSTEM               4               508
[1] 2 2
[1] FALSE
D79V4, binary
                   cls
clus                  0   1
  FAM123C MUTATED     1  10
  FAM123C WILD-TYPE 328 451
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123C MUTATED      1   10
  FAM123C WILD-TYPE  328  451
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  FEMALE               1               328
  MALE                10               451
[1] 2 2
[1] FALSE
D79V5, binary
                   cls
clus                  0   1
  FAM123C MUTATED     0  10
  FAM123C WILD-TYPE 232 498
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123C MUTATED      0   10
  FAM123C WILD-TYPE  232  498
     clus
vv    FAM123C MUTATED FAM123C WILD-TYPE
  NO                0               232
  YES              10               498
[1] 2 2
[1] FALSE
D79V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FAM123C MUTATED             3                             0                1
  FAM123C WILD-TYPE         189                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FAM123C MUTATED                   0                   0
  FAM123C WILD-TYPE               190                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  FAM123C MUTATED                                 7
  FAM123C WILD-TYPE                             258
D79V7, multiclass
                                 clus
vv                                FAM123C MUTATED FAM123C WILD-TYPE
  ASTROCYTOMA                                   3               189
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             0               190
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               7               258
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FAM123C MUTATED                                  0     0
  FAM123C WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  FAM123C MUTATED                           1    10
  FAM123C WILD-TYPE                        37   712
D79V8, multiclass
                                  clus
vv                                 FAM123C MUTATED FAM123C WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      1                37
  WHITE                                         10               712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V9, binary
                   cls
clus                  0   1
  FAM123C MUTATED     0  10
  FAM123C WILD-TYPE  35 656
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123C MUTATED      0   10
  FAM123C WILD-TYPE   35  656
                        clus
vv                       FAM123C MUTATED FAM123C WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO              10               656
[1] 2 2
[1] FALSE

Clustering(80) Variable = KRAS MUTATION ANALYSIS
D80V1, survival
                sevent
clus2              0   1
  KRAS MUTATED     3   1
  KRAS WILD-TYPE 450 333
  KRAS MUTATED KRAS WILD-TYPE 
             4            783 
  KRAS MUTATED KRAS WILD-TYPE 
             1            333 
$`KRAS MUTATED`
TCGA-06-2561 TCGA-74-6577 TCGA-CS-5396 TCGA-RY-A843 
       17.65         4.34         9.96         2.07 

$`KRAS WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       13.61        15.32         1.08        12.49         4.93        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
       12.46         3.45        20.91        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
       40.18         0.10        21.01         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A845 
       59.38        30.87         5.46         9.90        28.08        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  KRAS MUTATED KRAS WILD-TYPE 
          2.07           0.03 
  KRAS MUTATED KRAS WILD-TYPE 
         17.65         211.17 
  KRAS MUTATED KRAS WILD-TYPE 
          7.15          16.83 
[1] "2.1 - 17.6 (7.2)"   "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D80V2, continuous
D80V3, binary
                cls
clus               0   1
  KRAS MUTATED     2   2
  KRAS WILD-TYPE 276 510
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      2    2
  KRAS WILD-TYPE  276  510
                        clus
vv                       KRAS MUTATED KRAS WILD-TYPE
  BRAIN                             2            276
  CENTRAL NERVOUS SYSTEM            2            510
[1] 2 2
[1] FALSE
D80V4, binary
                cls
clus               0   1
  KRAS MUTATED     2   2
  KRAS WILD-TYPE 327 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      2    2
  KRAS WILD-TYPE  327  459
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE            2            327
  MALE              2            459
[1] 2 2
[1] FALSE
D80V5, binary
                cls
clus               0   1
  KRAS MUTATED     1   3
  KRAS WILD-TYPE 231 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      1    3
  KRAS WILD-TYPE  231  505
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             1            231
  YES            3            505
[1] 2 2
[1] FALSE
D80V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KRAS MUTATED             1                             0                0
  KRAS WILD-TYPE         191                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KRAS MUTATED                   1                   0
  KRAS WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  KRAS MUTATED                                 2
  KRAS WILD-TYPE                             263
D80V7, multiclass
                                 clus
vv                                KRAS MUTATED KRAS WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            2            263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KRAS MUTATED                                  0     0
  KRAS WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  KRAS MUTATED                           0     3
  KRAS WILD-TYPE                        38   719
D80V8, multiclass
                                  clus
vv                                 KRAS MUTATED KRAS WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D80V9, binary
                cls
clus               0   1
  KRAS MUTATED     0   3
  KRAS WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      0    3
  KRAS WILD-TYPE   35  663
                        clus
vv                       KRAS MUTATED KRAS WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(81) Variable = OAS2 MUTATION ANALYSIS
D81V1, survival
                sevent
clus2              0   1
  OAS2 MUTATED     1   3
  OAS2 WILD-TYPE 452 331
  OAS2 MUTATED OAS2 WILD-TYPE 
             4            783 
  OAS2 MUTATED OAS2 WILD-TYPE 
             3            331 
$`OAS2 MUTATED`
TCGA-06-5408 TCGA-12-0618 TCGA-32-2615 TCGA-CS-6290 
       11.74        12.99        15.95        17.95 

$`OAS2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       31.50         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       18.02        15.35        14.73        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  OAS2 MUTATED OAS2 WILD-TYPE 
         11.74           0.03 
  OAS2 MUTATED OAS2 WILD-TYPE 
         17.95         211.17 
  OAS2 MUTATED OAS2 WILD-TYPE 
         14.47          16.83 
[1] "11.7 - 17.9 (14.5)" "0.0 - 211.2 (16.8)"
[1] "hr=" "2.7"
D81V2, continuous
D81V3, binary
                cls
clus               0   1
  OAS2 MUTATED     3   1
  OAS2 WILD-TYPE 275 511
[1] "tbl2"
                cls
clus             [,1] [,2]
  OAS2 MUTATED      3    1
  OAS2 WILD-TYPE  275  511
                        clus
vv                       OAS2 MUTATED OAS2 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            1            511
[1] 2 2
[1] FALSE
D81V4, binary
                cls
clus               0   1
  OAS2 MUTATED     1   3
  OAS2 WILD-TYPE 328 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  OAS2 MUTATED      1    3
  OAS2 WILD-TYPE  328  458
        clus
vv       OAS2 MUTATED OAS2 WILD-TYPE
  FEMALE            1            328
  MALE              3            458
[1] 2 2
[1] FALSE
D81V5, binary
                cls
clus               0   1
  OAS2 MUTATED     0   4
  OAS2 WILD-TYPE 232 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  OAS2 MUTATED      0    4
  OAS2 WILD-TYPE  232  504
     clus
vv    OAS2 MUTATED OAS2 WILD-TYPE
  NO             0            232
  YES            4            504
[1] 2 2
[1] FALSE
D81V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  OAS2 MUTATED             1                             0                0
  OAS2 WILD-TYPE         191                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  OAS2 MUTATED                   0                   0
  OAS2 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  OAS2 MUTATED                                 3
  OAS2 WILD-TYPE                             262
D81V7, multiclass
                                 clus
vv                                OAS2 MUTATED OAS2 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  OAS2 MUTATED                                  0     0
  OAS2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  OAS2 MUTATED                           0     3
  OAS2 WILD-TYPE                        38   719
D81V8, multiclass
                                  clus
vv                                 OAS2 MUTATED OAS2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D81V9, binary
                cls
clus               0   1
  OAS2 MUTATED     0   3
  OAS2 WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  OAS2 MUTATED      0    3
  OAS2 WILD-TYPE   35  663
                        clus
vv                       OAS2 MUTATED OAS2 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(82) Variable = MAP3K1 MUTATION ANALYSIS
D82V1, survival
                  sevent
clus2                0   1
  MAP3K1 MUTATED     3   6
  MAP3K1 WILD-TYPE 450 328
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
               9              778 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
               6              328 
$`MAP3K1 MUTATED`
TCGA-06-0214 TCGA-06-0743 TCGA-06-2559 TCGA-12-0619 TCGA-14-0790 TCGA-26-6173 
       15.02        26.40         4.93        34.92        13.78         7.92 
TCGA-DU-6392 TCGA-DU-7304 TCGA-DU-A5TU 
      211.17        23.31        26.17 

$`MAP3K1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        7.63         0.53        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        14.20        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       14.73        12.99        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42        13.78        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 
       14.86         5.49         8.88        18.97         1.58         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7306 TCGA-DU-7309 
       44.02        62.01        25.91        60.30        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       24.43        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
            4.93             0.03 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
          211.17           182.33 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
          23.310           16.815 
[1] "4.9 - 211.2 (23.3)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.1"
D82V2, continuous
D82V3, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED     6   3
  MAP3K1 WILD-TYPE 272 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED      6    3
  MAP3K1 WILD-TYPE  272  509
                        clus
vv                       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  BRAIN                               6              272
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D82V4, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED     3   6
  MAP3K1 WILD-TYPE 326 455
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED      3    6
  MAP3K1 WILD-TYPE  326  455
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  FEMALE              3              326
  MALE                6              455
[1] 2 2
[1] FALSE
D82V5, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED     1   8
  MAP3K1 WILD-TYPE 231 500
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED      1    8
  MAP3K1 WILD-TYPE  231  500
     clus
vv    MAP3K1 MUTATED MAP3K1 WILD-TYPE
  NO               1              231
  YES              8              500
[1] 2 2
[1] FALSE
D82V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MAP3K1 MUTATED             2                             0                1
  MAP3K1 WILD-TYPE         190                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MAP3K1 MUTATED                   0                   0
  MAP3K1 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  MAP3K1 MUTATED                                 6
  MAP3K1 WILD-TYPE                             259
D82V7, multiclass
                                 clus
vv                                MAP3K1 MUTATED MAP3K1 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              6              259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MAP3K1 MUTATED                                  0     0
  MAP3K1 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  MAP3K1 MUTATED                           0     9
  MAP3K1 WILD-TYPE                        38   713
D82V8, multiclass
                                  clus
vv                                 MAP3K1 MUTATED MAP3K1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         9              713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D82V9, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED     0   8
  MAP3K1 WILD-TYPE  35 658
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED      0    8
  MAP3K1 WILD-TYPE   35  658
                        clus
vv                       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              8              658
[1] 2 2
[1] FALSE

Clustering(83) Variable = TRPV6 MUTATION ANALYSIS
D83V1, survival
                 sevent
clus2               0   1
  TRPV6 MUTATED     7   6
  TRPV6 WILD-TYPE 446 328
  TRPV6 MUTATED TRPV6 WILD-TYPE 
             13             774 
  TRPV6 MUTATED TRPV6 WILD-TYPE 
              6             328 
$`TRPV6 MUTATED`
TCGA-02-2483 TCGA-06-0686 TCGA-12-1597 TCGA-12-3653 TCGA-27-1838 TCGA-27-2519 
       15.32        14.20        22.19        14.53        11.51        18.08 
TCGA-76-6656 TCGA-DU-6392 TCGA-FG-8182 TCGA-HT-A5RA TCGA-P5-A731 TCGA-QH-A65V 
        4.83       211.17        13.68        27.35         9.01        12.62 
TCGA-QH-A6CZ 
        9.17 

$`TRPV6 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2485 
        4.73         2.83        14.73         2.50        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       10.62        15.22        10.95        34.92        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2521 
       40.54        21.30        30.05        14.04        24.76        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
        2.70        11.38        17.06         8.35        20.98         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.61        20.09        28.34        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       11.64        10.95        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
       12.23         2.20        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  TRPV6 MUTATED TRPV6 WILD-TYPE 
           4.83            0.03 
  TRPV6 MUTATED TRPV6 WILD-TYPE 
         211.17          182.33 
  TRPV6 MUTATED TRPV6 WILD-TYPE 
          14.20           16.93 
[1] "4.8 - 211.2 (14.2)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1"  
D83V2, continuous
D83V3, binary
                 cls
clus                0   1
  TRPV6 MUTATED     7   6
  TRPV6 WILD-TYPE 271 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPV6 MUTATED      7    6
  TRPV6 WILD-TYPE  271  506
                        clus
vv                       TRPV6 MUTATED TRPV6 WILD-TYPE
  BRAIN                              7             271
  CENTRAL NERVOUS SYSTEM             6             506
[1] 2 2
[1] FALSE
D83V4, binary
                 cls
clus                0   1
  TRPV6 MUTATED     7   6
  TRPV6 WILD-TYPE 322 455
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPV6 MUTATED      7    6
  TRPV6 WILD-TYPE  322  455
        clus
vv       TRPV6 MUTATED TRPV6 WILD-TYPE
  FEMALE             7             322
  MALE               6             455
[1] 2 2
[1] FALSE
D83V5, binary
                 cls
clus                0   1
  TRPV6 MUTATED     3  10
  TRPV6 WILD-TYPE 229 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPV6 MUTATED      3   10
  TRPV6 WILD-TYPE  229  498
     clus
vv    TRPV6 MUTATED TRPV6 WILD-TYPE
  NO              3             229
  YES            10             498
[1] 2 2
[1] FALSE
D83V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TRPV6 MUTATED             2                             0                2
  TRPV6 WILD-TYPE         190                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TRPV6 MUTATED                   2                   0
  TRPV6 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TRPV6 MUTATED                                 7
  TRPV6 WILD-TYPE                             258
D83V7, multiclass
                                 clus
vv                                TRPV6 MUTATED TRPV6 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             7             258
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TRPV6 MUTATED                                  0     1
  TRPV6 WILD-TYPE                                1    12
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  TRPV6 MUTATED                           1    11
  TRPV6 WILD-TYPE                        37   711
D83V8, multiclass
                                  clus
vv                                 TRPV6 MUTATED TRPV6 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              12
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                       11             711
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D83V9, binary
                 cls
clus                0   1
  TRPV6 MUTATED     0  13
  TRPV6 WILD-TYPE  35 653
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPV6 MUTATED      0   13
  TRPV6 WILD-TYPE   35  653
                        clus
vv                       TRPV6 MUTATED TRPV6 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            13             653
[1] 2 2
[1] FALSE

Clustering(84) Variable = MAP3K12 MUTATION ANALYSIS
D84V1, survival
                   sevent
clus2                 0   1
  MAP3K12 MUTATED     5   1
  MAP3K12 WILD-TYPE 448 333
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
                6               781 
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
                1               333 
$`MAP3K12 MUTATED`
TCGA-06-0877 TCGA-DU-6392 TCGA-DU-7019 TCGA-IK-8125 TCGA-R8-A73M TCGA-S9-A6WP 
        5.65       211.17        26.30        42.77        59.38        18.64 

$`MAP3K12 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.81        20.71        19.00        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-RY-A83X 
       11.08        12.99        88.83        94.03        32.65        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.61        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
             5.65              0.03 
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
           211.17            182.33 
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
           34.535            16.730 
[1] "5.7 - 211.2 (34.5)" "0.0 - 182.3 (16.7)"
[1] "hr=" "5.5"
D84V2, continuous
D84V3, binary
                   cls
clus                  0   1
  MAP3K12 MUTATED     1   5
  MAP3K12 WILD-TYPE 277 507
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAP3K12 MUTATED      1    5
  MAP3K12 WILD-TYPE  277  507
                        clus
vv                       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  BRAIN                                1               277
  CENTRAL NERVOUS SYSTEM               5               507
[1] 2 2
[1] FALSE
D84V4, binary
                   cls
clus                  0   1
  MAP3K12 MUTATED     2   4
  MAP3K12 WILD-TYPE 327 457
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAP3K12 MUTATED      2    4
  MAP3K12 WILD-TYPE  327  457
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  FEMALE               2               327
  MALE                 4               457
[1] 2 2
[1] FALSE
D84V5, binary
                   cls
clus                  0   1
  MAP3K12 MUTATED     2   4
  MAP3K12 WILD-TYPE 230 504
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAP3K12 MUTATED      2    4
  MAP3K12 WILD-TYPE  230  504
     clus
vv    MAP3K12 MUTATED MAP3K12 WILD-TYPE
  NO                2               230
  YES               4               504
[1] 2 2
[1] FALSE
D84V6, continuous
[1] "Remove cluster labels:" "MAP3K12 MUTATED"       
clus
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
                2               508 
       TCGA-02-0003        TCGA-02-0033        TCGA-02-0047        TCGA-02-0055 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-02-2470        TCGA-02-2483        TCGA-02-2485        TCGA-02-2486 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0126        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0151 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0154        TCGA-06-0155        TCGA-06-0157        TCGA-06-0158 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0165        TCGA-06-0167        TCGA-06-0168        TCGA-06-0169 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0185 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0188        TCGA-06-0192        TCGA-06-0195        TCGA-06-0214 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0238        TCGA-06-0240        TCGA-06-0241 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0646        TCGA-06-0648        TCGA-06-0686 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0743        TCGA-06-0744        TCGA-06-0745        TCGA-06-0747 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0750        TCGA-06-0875        TCGA-06-0876        TCGA-06-0878 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-1806        TCGA-06-2557        TCGA-06-2558        TCGA-06-2559 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-2561        TCGA-06-2562        TCGA-06-2563        TCGA-06-2564 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-2565        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5417 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6695        TCGA-06-6697 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-06-6700        TCGA-08-0386        TCGA-12-0615        TCGA-12-0616 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0688        TCGA-12-0692 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-12-0821        TCGA-12-1597        TCGA-12-3649        TCGA-12-3650 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5299        TCGA-12-5301 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-14-0740        TCGA-14-0786        TCGA-14-0787        TCGA-14-0789 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-14-1456        TCGA-14-1823        TCGA-14-1825        TCGA-14-1829 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-14-2554        TCGA-14-4157        TCGA-15-0742        TCGA-19-1390 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2623 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5954        TCGA-19-5958 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1442        TCGA-26-5132 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5139        TCGA-26-6173 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-26-6174        TCGA-27-1830        TCGA-27-1831        TCGA-27-1832 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-27-1833        TCGA-27-1834        TCGA-27-1835        TCGA-27-1836 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-27-1837        TCGA-27-1838        TCGA-27-2518        TCGA-27-2519 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-27-2521        TCGA-27-2523        TCGA-27-2524        TCGA-27-2526 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-27-2527        TCGA-27-2528        TCGA-28-2502        TCGA-28-2509 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-28-2513        TCGA-28-2514        TCGA-28-5204        TCGA-28-5207 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-28-5208        TCGA-28-5211        TCGA-28-5213        TCGA-28-5214 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-28-5215        TCGA-28-5216        TCGA-28-5219        TCGA-28-5220 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-2615        TCGA-32-2638 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-32-4213        TCGA-41-2571        TCGA-41-2573        TCGA-41-2575 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4927 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4932 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-76-4934        TCGA-76-4935        TCGA-76-6191        TCGA-76-6192 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-76-6193        TCGA-76-6280        TCGA-76-6282        TCGA-76-6285 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-76-6286        TCGA-76-6656        TCGA-76-6657        TCGA-76-6661 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-76-6662        TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-CS-4938        TCGA-CS-4941        TCGA-CS-4942        TCGA-CS-4943 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-CS-4944        TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5395 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-CS-5396        TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-CS-6290        TCGA-CS-6665        TCGA-CS-6666        TCGA-CS-6667 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-DB-5274        TCGA-DB-A4XE 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DB-A64L        TCGA-DB-A64Q        TCGA-DB-A64R        TCGA-DB-A64S 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W        TCGA-DB-A64X 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DB-A75L        TCGA-DB-A75O        TCGA-DH-5140        TCGA-DH-5142 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B        TCGA-DH-A66D 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7UR        TCGA-DH-A7UU 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DH-A7UV        TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-5874        TCGA-DU-6396        TCGA-DU-6401        TCGA-DU-6403 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6407        TCGA-DU-6408 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-6410        TCGA-DU-7009        TCGA-DU-7011        TCGA-DU-7013 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7294        TCGA-DU-7298 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-7299        TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8165 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A6S2 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-A6S6        TCGA-DU-A6S7        TCGA-DU-A6S8        TCGA-DU-A76R 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-A7T6        TCGA-DU-A7T8        TCGA-DU-A7TA        TCGA-DU-A7TB 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-DU-A7TC        TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-E1-5302 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-A7YE        TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-A7YK        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-A7YO        TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YV 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2        TCGA-E1-A7Z4 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-E1-A7Z6        TCGA-FG-5963        TCGA-FG-5965        TCGA-FG-6688 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7636 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-FG-7638        TCGA-FG-8181        TCGA-FG-8185        TCGA-FG-8186 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-A4MT 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A60J        TCGA-FG-A60L 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-FG-A6J1        TCGA-FG-A6J3        TCGA-FG-A711        TCGA-FG-A713 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-FG-A87Q        TCGA-HT-7468        TCGA-HT-7470        TCGA-HT-7475 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7485 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7609        TCGA-HT-7611        TCGA-HT-7686 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-7689        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7858 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7884        TCGA-HT-8013        TCGA-HT-8105 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-8113        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R7 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-A5RA        TCGA-HT-A5RC        TCGA-HT-A615        TCGA-HT-A617 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-A618        TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A61C 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-HT-A74L        TCGA-IK-7675        TCGA-KT-A74X        TCGA-KT-A7W1 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-P5-A731        TCGA-QH-A65R        TCGA-QH-A65S        TCGA-QH-A65V 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS        TCGA-QH-A6CU 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX        TCGA-QH-A6CY 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-QH-A6CZ        TCGA-QH-A6X3        TCGA-QH-A6X4        TCGA-QH-A6X5 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-QH-A86X        TCGA-QH-A870        TCGA-RY-A83Y        TCGA-RY-A840 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-RY-A845        TCGA-RY-A847        TCGA-S9-A6TS        TCGA-S9-A6TU 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A6TV        TCGA-S9-A6TW        TCGA-S9-A6TX        TCGA-S9-A6TY 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A6TZ        TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U2 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A6U5        TCGA-S9-A6U6        TCGA-S9-A6U8        TCGA-S9-A6UA 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A6UB        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WI        TCGA-S9-A6WL        TCGA-S9-A6WM 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A6WN        TCGA-S9-A6WO        TCGA-S9-A6WQ        TCGA-S9-A7IQ 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A7IS        TCGA-S9-A7IX        TCGA-S9-A7IY        TCGA-S9-A7IZ 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7J3 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A7QW        TCGA-S9-A7QX        TCGA-S9-A7QY        TCGA-S9-A7QZ 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A7R1        TCGA-S9-A7R2        TCGA-S9-A7R3        TCGA-S9-A7R4 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-S9-A7R7        TCGA-S9-A7R8        TCGA-S9-A89V        TCGA-S9-A89Z 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TM-A7C3        TCGA-TM-A7C4        TCGA-TM-A7C5        TCGA-TM-A7CA 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TM-A7CF        TCGA-TM-A84B        TCGA-TM-A84C        TCGA-TM-A84F 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TM-A84G        TCGA-TM-A84H        TCGA-TM-A84I        TCGA-TM-A84J 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TM-A84L        TCGA-TM-A84M        TCGA-TM-A84O        TCGA-TM-A84Q 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TM-A84T        TCGA-TQ-A7RG 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TQ-A7RK        TCGA-TQ-A7RM        TCGA-TQ-A7RN        TCGA-TQ-A7RO 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TQ-A7RP        TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-TQ-A7RU        TCGA-TQ-A7RV        TCGA-TQ-A7RW        TCGA-TQ-A8XE 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-VM-A8C8        TCGA-VM-A8CA        TCGA-VM-A8CD        TCGA-VM-A8CE 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
       TCGA-VM-A8CF        TCGA-VM-A8CH        TCGA-WY-A858        TCGA-WY-A859 
"MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" "MAP3K12 WILD-TYPE" 
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MAP3K12 MUTATED             1                             0                3
  MAP3K12 WILD-TYPE         191                             9              127
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MAP3K12 MUTATED                   1                   0
  MAP3K12 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  MAP3K12 MUTATED                                 1
  MAP3K12 WILD-TYPE                             264
D84V7, multiclass
                                 clus
vv                                MAP3K12 MUTATED MAP3K12 WILD-TYPE
  ASTROCYTOMA                                   1               191
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              3               127
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               1               264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MAP3K12 MUTATED                                  0     0
  MAP3K12 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  MAP3K12 MUTATED                           0     6
  MAP3K12 WILD-TYPE                        38   716
D84V8, multiclass
                                  clus
vv                                 MAP3K12 MUTATED MAP3K12 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          6               716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D84V9, binary
                   cls
clus                  0   1
  MAP3K12 MUTATED     0   6
  MAP3K12 WILD-TYPE  35 660
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAP3K12 MUTATED      0    6
  MAP3K12 WILD-TYPE   35  660
                        clus
vv                       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               6               660
[1] 2 2
[1] FALSE

Clustering(85) Variable = TLR7 MUTATION ANALYSIS
D85V1, survival
                sevent
clus2              0   1
  TLR7 MUTATED     6   4
  TLR7 WILD-TYPE 447 330
  TLR7 MUTATED TLR7 WILD-TYPE 
            10            777 
  TLR7 MUTATED TLR7 WILD-TYPE 
             4            330 
$`TLR7 MUTATED`
TCGA-19-5950 TCGA-28-5208 TCGA-41-5651 TCGA-74-6575 TCGA-DU-6392 TCGA-DU-7294 
       17.19        17.88        15.12        20.91       211.17        94.32 
TCGA-E1-A7YQ TCGA-HT-7474 TCGA-P5-A733 TCGA-TM-A84T 
       51.88         3.75        13.61        23.80 

$`TLR7 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5951 
        4.08        24.23         7.00         4.50         6.64         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       11.28         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44        11.84         0.20        12.46         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
       16.54        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A735 
       10.42        13.25        11.64        10.95         9.01         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       18.61        14.93        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  TLR7 MUTATED TLR7 WILD-TYPE 
          3.75           0.03 
  TLR7 MUTATED TLR7 WILD-TYPE 
        211.17         182.33 
  TLR7 MUTATED TLR7 WILD-TYPE 
        19.395         16.730 
[1] "3.8 - 211.2 (19.4)" "0.0 - 182.3 (16.7)"
[1] "hr=" "1.8"
D85V2, continuous
D85V3, binary
                cls
clus               0   1
  TLR7 MUTATED     4   6
  TLR7 WILD-TYPE 274 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR7 MUTATED      4    6
  TLR7 WILD-TYPE  274  506
                        clus
vv                       TLR7 MUTATED TLR7 WILD-TYPE
  BRAIN                             4            274
  CENTRAL NERVOUS SYSTEM            6            506
[1] 2 2
[1] FALSE
D85V4, binary
                cls
clus               0   1
  TLR7 MUTATED     7   3
  TLR7 WILD-TYPE 322 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR7 MUTATED      7    3
  TLR7 WILD-TYPE  322  458
        clus
vv       TLR7 MUTATED TLR7 WILD-TYPE
  FEMALE            7            322
  MALE              3            458
[1] 2 2
[1] FALSE
D85V5, binary
                cls
clus               0   1
  TLR7 MUTATED     3   7
  TLR7 WILD-TYPE 229 501
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR7 MUTATED      3    7
  TLR7 WILD-TYPE  229  501
     clus
vv    TLR7 MUTATED TLR7 WILD-TYPE
  NO             3            229
  YES            7            501
[1] 2 2
[1] FALSE
D85V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TLR7 MUTATED             2                             0                2
  TLR7 WILD-TYPE         190                             9              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TLR7 MUTATED                   2                   0
  TLR7 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TLR7 MUTATED                                 4
  TLR7 WILD-TYPE                             261
D85V7, multiclass
                                 clus
vv                                TLR7 MUTATED TLR7 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TLR7 MUTATED                                  0     0
  TLR7 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TLR7 MUTATED                           2     7
  TLR7 WILD-TYPE                        36   715
D85V8, multiclass
                                  clus
vv                                 TLR7 MUTATED TLR7 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   2             36
  WHITE                                       7            715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D85V9, binary
                cls
clus               0   1
  TLR7 MUTATED     0   8
  TLR7 WILD-TYPE  35 658
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR7 MUTATED      0    8
  TLR7 WILD-TYPE   35  658
                        clus
vv                       TLR7 MUTATED TLR7 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            8            658
[1] 2 2
[1] FALSE

Clustering(86) Variable = TREML2 MUTATION ANALYSIS
D86V1, survival
                  sevent
clus2                0   1
  TREML2 MUTATED     3   3
  TREML2 WILD-TYPE 450 331
  TREML2 MUTATED TREML2 WILD-TYPE 
               6              781 
  TREML2 MUTATED TREML2 WILD-TYPE 
               3              331 
$`TREML2 MUTATED`
TCGA-02-0047 TCGA-06-2557 TCGA-12-1597 TCGA-DB-A64Q TCGA-DU-6392 TCGA-HT-7688 
       14.73         1.08        22.19         5.98       211.17        31.69 

$`TREML2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       15.32        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       10.62        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64R 
       72.95        31.63        24.20        25.48        30.12        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 
       44.68         6.05        42.74         0.10        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  TREML2 MUTATED TREML2 WILD-TYPE 
            1.08             0.03 
  TREML2 MUTATED TREML2 WILD-TYPE 
          211.17           182.33 
  TREML2 MUTATED TREML2 WILD-TYPE 
           18.46            16.83 
[1] "1.1 - 211.2 (18.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.4"
D86V2, continuous
D86V3, binary
                  cls
clus                 0   1
  TREML2 MUTATED     3   3
  TREML2 WILD-TYPE 275 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TREML2 MUTATED      3    3
  TREML2 WILD-TYPE  275  509
                        clus
vv                       TREML2 MUTATED TREML2 WILD-TYPE
  BRAIN                               3              275
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D86V4, binary
                  cls
clus                 0   1
  TREML2 MUTATED     3   3
  TREML2 WILD-TYPE 326 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TREML2 MUTATED      3    3
  TREML2 WILD-TYPE  326  458
        clus
vv       TREML2 MUTATED TREML2 WILD-TYPE
  FEMALE              3              326
  MALE                3              458
[1] 2 2
[1] FALSE
D86V5, binary
                  cls
clus                 0   1
  TREML2 MUTATED     2   4
  TREML2 WILD-TYPE 230 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TREML2 MUTATED      2    4
  TREML2 WILD-TYPE  230  504
     clus
vv    TREML2 MUTATED TREML2 WILD-TYPE
  NO               2              230
  YES              4              504
[1] 2 2
[1] FALSE
D86V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TREML2 MUTATED             1                             0                1
  TREML2 WILD-TYPE         191                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TREML2 MUTATED                   1                   0
  TREML2 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  TREML2 MUTATED                                 3
  TREML2 WILD-TYPE                             262
D86V7, multiclass
                                 clus
vv                                TREML2 MUTATED TREML2 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              3              262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TREML2 MUTATED                                  0     0
  TREML2 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  TREML2 MUTATED                           1     4
  TREML2 WILD-TYPE                        37   718
D86V8, multiclass
                                  clus
vv                                 TREML2 MUTATED TREML2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D86V9, binary
                  cls
clus                 0   1
  TREML2 MUTATED     0   5
  TREML2 WILD-TYPE  35 661
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TREML2 MUTATED      0    5
  TREML2 WILD-TYPE   35  661
                        clus
vv                       TREML2 MUTATED TREML2 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              5              661
[1] 2 2
[1] FALSE

Clustering(87) Variable = MACC1 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2               0   1
  MACC1 MUTATED     2   6
  MACC1 WILD-TYPE 451 328
  MACC1 MUTATED MACC1 WILD-TYPE 
              8             779 
  MACC1 MUTATED MACC1 WILD-TYPE 
              6             328 
$`MACC1 MUTATED`
TCGA-06-0743 TCGA-06-5418 TCGA-06-6693 TCGA-32-4719 TCGA-DU-6392 TCGA-DU-7012 
       26.40         2.73       120.56        10.85       211.17         6.54 
TCGA-E1-5322 TCGA-TM-A84H 
      130.78        30.44 

$`MACC1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 
        9.80         2.10        23.57        14.20        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         5.10         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.79         5.39         1.48         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 
       21.14        20.32         3.72        12.59        19.86        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 
       62.96       156.23       154.36        14.99       105.21         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
       95.57        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       40.64        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  MACC1 MUTATED MACC1 WILD-TYPE 
           2.73            0.03 
  MACC1 MUTATED MACC1 WILD-TYPE 
         211.17          182.33 
  MACC1 MUTATED MACC1 WILD-TYPE 
          28.42           16.80 
[1] "2.7 - 211.2 (28.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.2"
D87V2, continuous
D87V3, binary
                 cls
clus                0   1
  MACC1 MUTATED     4   4
  MACC1 WILD-TYPE 274 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MACC1 MUTATED      4    4
  MACC1 WILD-TYPE  274  508
                        clus
vv                       MACC1 MUTATED MACC1 WILD-TYPE
  BRAIN                              4             274
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D87V4, binary
                 cls
clus                0   1
  MACC1 MUTATED     6   2
  MACC1 WILD-TYPE 323 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MACC1 MUTATED      6    2
  MACC1 WILD-TYPE  323  459
        clus
vv       MACC1 MUTATED MACC1 WILD-TYPE
  FEMALE             6             323
  MALE               2             459
[1] 2 2
[1] FALSE
D87V5, binary
                 cls
clus                0   1
  MACC1 MUTATED     2   6
  MACC1 WILD-TYPE 230 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MACC1 MUTATED      2    6
  MACC1 WILD-TYPE  230  502
     clus
vv    MACC1 MUTATED MACC1 WILD-TYPE
  NO              2             230
  YES             6             502
[1] 2 2
[1] FALSE
D87V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MACC1 MUTATED             2                             0                2
  MACC1 WILD-TYPE         190                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MACC1 MUTATED                   0                   0
  MACC1 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  MACC1 MUTATED                                 4
  MACC1 WILD-TYPE                             261
D87V7, multiclass
                                 clus
vv                                MACC1 MUTATED MACC1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             4             261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MACC1 MUTATED                                  0     0
  MACC1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MACC1 MUTATED                           1     7
  MACC1 WILD-TYPE                        37   715
D87V8, multiclass
                                  clus
vv                                 MACC1 MUTATED MACC1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D87V9, binary
                 cls
clus                0   1
  MACC1 MUTATED     0   8
  MACC1 WILD-TYPE  35 658
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MACC1 MUTATED      0    8
  MACC1 WILD-TYPE   35  658
                        clus
vv                       MACC1 MUTATED MACC1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             8             658
[1] 2 2
[1] FALSE

Clustering(88) Variable = AOX1 MUTATION ANALYSIS
D88V1, survival
                sevent
clus2              0   1
  AOX1 MUTATED     3   5
  AOX1 WILD-TYPE 450 329
  AOX1 MUTATED AOX1 WILD-TYPE 
             8            779 
  AOX1 MUTATED AOX1 WILD-TYPE 
             5            329 
$`AOX1 MUTATED`
TCGA-06-2559 TCGA-06-2561 TCGA-12-0618 TCGA-19-2620 TCGA-DU-6392 TCGA-DU-A5TR 
        4.93        17.65        12.99         4.87       211.17        29.85 
TCGA-E1-A7YJ TCGA-HT-7690 
       19.46         0.10 

$`AOX1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2562 TCGA-06-2563 
       13.61        15.32         1.08        12.49        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       15.35        14.73        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       33.27        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        31.69        14.96         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AOX1 MUTATED AOX1 WILD-TYPE 
          0.10           0.03 
  AOX1 MUTATED AOX1 WILD-TYPE 
        211.17         182.33 
  AOX1 MUTATED AOX1 WILD-TYPE 
         15.32          16.83 
[1] "0.1 - 211.2 (15.3)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.2"
D88V2, continuous
D88V3, binary
                cls
clus               0   1
  AOX1 MUTATED     4   4
  AOX1 WILD-TYPE 274 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOX1 MUTATED      4    4
  AOX1 WILD-TYPE  274  508
                        clus
vv                       AOX1 MUTATED AOX1 WILD-TYPE
  BRAIN                             4            274
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D88V4, binary
                cls
clus               0   1
  AOX1 MUTATED     2   6
  AOX1 WILD-TYPE 327 455
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOX1 MUTATED      2    6
  AOX1 WILD-TYPE  327  455
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  FEMALE            2            327
  MALE              6            455
[1] 2 2
[1] FALSE
D88V5, binary
                cls
clus               0   1
  AOX1 MUTATED     2   6
  AOX1 WILD-TYPE 230 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOX1 MUTATED      2    6
  AOX1 WILD-TYPE  230  502
     clus
vv    AOX1 MUTATED AOX1 WILD-TYPE
  NO             2            230
  YES            6            502
[1] 2 2
[1] FALSE
D88V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  AOX1 MUTATED             2                             0                2
  AOX1 WILD-TYPE         190                             9              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  AOX1 MUTATED                   0                   0
  AOX1 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  AOX1 MUTATED                                 4
  AOX1 WILD-TYPE                             261
D88V7, multiclass
                                 clus
vv                                AOX1 MUTATED AOX1 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AOX1 MUTATED                                  0     0
  AOX1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  AOX1 MUTATED                           0     8
  AOX1 WILD-TYPE                        38   714
D88V8, multiclass
                                  clus
vv                                 AOX1 MUTATED AOX1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D88V9, binary
                cls
clus               0   1
  AOX1 MUTATED     0   8
  AOX1 WILD-TYPE  35 658
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOX1 MUTATED      0    8
  AOX1 WILD-TYPE   35  658
                        clus
vv                       AOX1 MUTATED AOX1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            8            658
[1] 2 2
[1] FALSE

Clustering(89) Variable = HEATR3 MUTATION ANALYSIS
D89V1, survival
                  sevent
clus2                0   1
  HEATR3 MUTATED     1   3
  HEATR3 WILD-TYPE 452 331
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               4              783 
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               3              331 
$`HEATR3 MUTATED`
TCGA-06-2557 TCGA-76-4934 TCGA-DU-6392 TCGA-DU-6393 
        1.08         2.53       211.17        52.11 

$`HEATR3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        15.32        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
       47.93        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  HEATR3 MUTATED HEATR3 WILD-TYPE 
            1.08             0.03 
  HEATR3 MUTATED HEATR3 WILD-TYPE 
          211.17           182.33 
  HEATR3 MUTATED HEATR3 WILD-TYPE 
           27.32            16.83 
[1] "1.1 - 211.2 (27.3)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.2"
D89V2, continuous
D89V3, binary
                  cls
clus                 0   1
  HEATR3 MUTATED     2   2
  HEATR3 WILD-TYPE 276 510
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HEATR3 MUTATED      2    2
  HEATR3 WILD-TYPE  276  510
                        clus
vv                       HEATR3 MUTATED HEATR3 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              2              510
[1] 2 2
[1] FALSE
D89V4, binary
                  cls
clus                 0   1
  HEATR3 MUTATED     2   2
  HEATR3 WILD-TYPE 327 459
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HEATR3 MUTATED      2    2
  HEATR3 WILD-TYPE  327  459
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  FEMALE              2              327
  MALE                2              459
[1] 2 2
[1] FALSE
D89V5, binary
                  cls
clus                 0   1
  HEATR3 MUTATED     2   2
  HEATR3 WILD-TYPE 230 506
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HEATR3 MUTATED      2    2
  HEATR3 WILD-TYPE  230  506
     clus
vv    HEATR3 MUTATED HEATR3 WILD-TYPE
  NO               2              230
  YES              2              506
[1] 2 2
[1] FALSE
D89V6, continuous
[1] "Remove cluster labels:" "HEATR3 MUTATED"        
clus
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               2              508 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0126       TCGA-06-0128       TCGA-06-0129       TCGA-06-0130 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0139       TCGA-06-0140       TCGA-06-0141       TCGA-06-0151 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0167       TCGA-06-0168       TCGA-06-0169 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0185 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0188       TCGA-06-0192       TCGA-06-0195       TCGA-06-0214 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0238       TCGA-06-0240       TCGA-06-0241 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0646       TCGA-06-0648       TCGA-06-0686 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0878 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-5858       TCGA-06-5859       TCGA-06-6388       TCGA-06-6389 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-06-6390       TCGA-06-6695       TCGA-06-6697       TCGA-06-6700 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-08-0386       TCGA-12-0615       TCGA-12-0616       TCGA-12-0618 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-12-0619       TCGA-12-0688       TCGA-12-0692       TCGA-12-0821 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-12-1597       TCGA-12-3649       TCGA-12-3650       TCGA-12-3652 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-12-3653       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-14-0786       TCGA-14-0787       TCGA-14-0789       TCGA-14-0790 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-14-0813       TCGA-14-0817       TCGA-14-0862       TCGA-14-0871 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-14-1043       TCGA-14-1395       TCGA-14-1450       TCGA-14-1456 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-14-1823       TCGA-14-1825       TCGA-14-1829       TCGA-14-2554 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-19-1390       TCGA-19-1790 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2631 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5954       TCGA-19-5958       TCGA-19-5959 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-19-5960       TCGA-26-1442       TCGA-26-5132       TCGA-26-5133 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-26-5134       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-27-2528       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5219       TCGA-28-5220       TCGA-32-1982 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-32-1986       TCGA-32-2615       TCGA-32-2638       TCGA-32-4213 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2573       TCGA-41-2575       TCGA-74-6573 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4935 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-76-6191       TCGA-76-6192       TCGA-76-6193       TCGA-76-6280 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-76-6282       TCGA-76-6285       TCGA-76-6286       TCGA-76-6656 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-76-6657       TCGA-76-6661       TCGA-76-6662       TCGA-76-6663 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-76-6664       TCGA-81-5910       TCGA-CS-4938       TCGA-CS-4941 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CS-5393       TCGA-CS-5395       TCGA-CS-5396       TCGA-CS-5397 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6290       TCGA-CS-6665 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6667       TCGA-CS-6668       TCGA-CS-6669 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-A4XE       TCGA-DB-A64L       TCGA-DB-A64Q 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DB-A64R       TCGA-DB-A64S       TCGA-DB-A64U       TCGA-DB-A64V 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DB-A64W       TCGA-DB-A64X       TCGA-DB-A75L       TCGA-DB-A75O 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DH-A66B       TCGA-DH-A66D       TCGA-DH-A66F       TCGA-DH-A66G 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DH-A7UR       TCGA-DH-A7UU       TCGA-DH-A7UV       TCGA-DU-5851 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-5852       TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-5870       TCGA-DU-5871       TCGA-DU-5874       TCGA-DU-6396 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-6401       TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-7009 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-7011       TCGA-DU-7013       TCGA-DU-7015       TCGA-DU-7018 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-7019       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7299 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8165       TCGA-DU-8167 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR       TCGA-DU-A5TS 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-A5TU       TCGA-DU-A5TW       TCGA-DU-A6S2       TCGA-DU-A6S6 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-A6S7       TCGA-DU-A6S8       TCGA-DU-A76R       TCGA-DU-A7T6 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-A7T8       TCGA-DU-A7TA       TCGA-DU-A7TB       TCGA-DU-A7TC 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-E1-5302       TCGA-E1-5303 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322       TCGA-E1-A7YE 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ       TCGA-E1-A7YK 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-E1-A7YL       TCGA-E1-A7YM       TCGA-E1-A7YN       TCGA-E1-A7YO 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-E1-A7YQ       TCGA-E1-A7YS       TCGA-E1-A7YV       TCGA-E1-A7YW 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-E1-A7YY       TCGA-E1-A7Z2       TCGA-E1-A7Z4       TCGA-E1-A7Z6 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5965       TCGA-FG-6688       TCGA-FG-6689 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636       TCGA-FG-7638 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-FG-8181       TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-A4MT       TCGA-FG-A4MW 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-FG-A60L       TCGA-FG-A6J1 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-FG-A6J3       TCGA-FG-A711       TCGA-FG-A713       TCGA-FG-A87Q 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-7468       TCGA-HT-7470       TCGA-HT-7475       TCGA-HT-7477 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7485       TCGA-HT-7607 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7611       TCGA-HT-7686       TCGA-HT-7689 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7854 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7858       TCGA-HT-7875 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-7884       TCGA-HT-8013       TCGA-HT-8105       TCGA-HT-8113 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R7       TCGA-HT-A5RA 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-A5RC       TCGA-HT-A615       TCGA-HT-A617       TCGA-HT-A618 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A61C       TCGA-HT-A74L 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-IK-7675       TCGA-KT-A74X       TCGA-KT-A7W1       TCGA-P5-A5EU 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5F0 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6       TCGA-P5-A731 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-QH-A65R       TCGA-QH-A65S       TCGA-QH-A65V       TCGA-QH-A65X 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU       TCGA-QH-A6CV 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY       TCGA-QH-A6CZ 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-QH-A6X3       TCGA-QH-A6X4       TCGA-QH-A6X5       TCGA-QH-A6X8 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC       TCGA-QH-A86X 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-QH-A870       TCGA-RY-A83Y       TCGA-RY-A840       TCGA-RY-A845 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-RY-A847       TCGA-S9-A6TS       TCGA-S9-A6TU       TCGA-S9-A6TV 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A6TW       TCGA-S9-A6TX       TCGA-S9-A6TY       TCGA-S9-A6TZ 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A6U0       TCGA-S9-A6U1       TCGA-S9-A6U2       TCGA-S9-A6U5 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A6U6       TCGA-S9-A6U8       TCGA-S9-A6UA       TCGA-S9-A6UB 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG       TCGA-S9-A6WH 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A6WI       TCGA-S9-A6WL       TCGA-S9-A6WM       TCGA-S9-A6WN 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A6WO       TCGA-S9-A6WP       TCGA-S9-A6WQ       TCGA-S9-A7IQ 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A7IS       TCGA-S9-A7IX       TCGA-S9-A7IY       TCGA-S9-A7IZ 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A7J0       TCGA-S9-A7J1       TCGA-S9-A7J2       TCGA-S9-A7J3 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A7QW       TCGA-S9-A7QX       TCGA-S9-A7QY       TCGA-S9-A7QZ 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A7R1       TCGA-S9-A7R2       TCGA-S9-A7R3       TCGA-S9-A7R4 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-S9-A7R7       TCGA-S9-A7R8       TCGA-S9-A89V       TCGA-S9-A89Z 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TM-A7C3       TCGA-TM-A7C4       TCGA-TM-A7C5       TCGA-TM-A7CA 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TM-A7CF       TCGA-TM-A84B       TCGA-TM-A84C       TCGA-TM-A84F 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TM-A84G       TCGA-TM-A84H       TCGA-TM-A84I       TCGA-TM-A84J 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TM-A84L       TCGA-TM-A84M       TCGA-TM-A84O       TCGA-TM-A84Q 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TM-A84T       TCGA-TQ-A7RG 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TQ-A7RK       TCGA-TQ-A7RM       TCGA-TQ-A7RN       TCGA-TQ-A7RO 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TQ-A7RP       TCGA-TQ-A7RQ       TCGA-TQ-A7RR       TCGA-TQ-A7RS 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-TQ-A7RU       TCGA-TQ-A7RV       TCGA-TQ-A7RW       TCGA-TQ-A8XE 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-VM-A8C8       TCGA-VM-A8CA       TCGA-VM-A8CD       TCGA-VM-A8CE 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-VM-A8CF       TCGA-VM-A8CH       TCGA-WY-A858       TCGA-WY-A859 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  HEATR3 MUTATED             1                             0                0
  HEATR3 WILD-TYPE         191                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  HEATR3 MUTATED                   1                   0
  HEATR3 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  HEATR3 MUTATED                                 2
  HEATR3 WILD-TYPE                             263
D89V7, multiclass
                                 clus
vv                                HEATR3 MUTATED HEATR3 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  HEATR3 MUTATED                                  0     0
  HEATR3 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  HEATR3 MUTATED                           1     3
  HEATR3 WILD-TYPE                        37   719
D89V8, multiclass
                                  clus
vv                                 HEATR3 MUTATED HEATR3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         3              719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D89V9, binary
                  cls
clus                 0   1
  HEATR3 MUTATED     0   3
  HEATR3 WILD-TYPE  35 663
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HEATR3 MUTATED      0    3
  HEATR3 WILD-TYPE   35  663
                        clus
vv                       HEATR3 MUTATED HEATR3 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              3              663
[1] 2 2
[1] FALSE

Clustering(90) Variable = KRT13 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2               0   1
  KRT13 MUTATED     2   4
  KRT13 WILD-TYPE 451 330
  KRT13 MUTATED KRT13 WILD-TYPE 
              6             781 
  KRT13 MUTATED KRT13 WILD-TYPE 
              4             330 
$`KRT13 MUTATED`
TCGA-06-0145 TCGA-06-0169 TCGA-06-5414 TCGA-E1-A7YI TCGA-TM-A7C3 TCGA-TM-A7C4 
        2.33         3.29         8.98         3.65        54.77        48.33 

$`KRT13 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        0.20        10.29         2.20        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
       19.66         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       44.58        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5415 TCGA-06-5417 
        3.55         8.35         4.54         8.81         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       29.13        93.21        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       20.48        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  KRT13 MUTATED KRT13 WILD-TYPE 
           2.33            0.03 
  KRT13 MUTATED KRT13 WILD-TYPE 
          54.77          211.17 
  KRT13 MUTATED KRT13 WILD-TYPE 
          6.315          16.830 
[1] "2.3 - 54.8 (6.3)"   "0.0 - 211.2 (16.8)"
[1] "hr=" "2"  
D90V2, continuous
D90V3, binary
                 cls
clus                0   1
  KRT13 MUTATED     3   3
  KRT13 WILD-TYPE 275 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT13 MUTATED      3    3
  KRT13 WILD-TYPE  275  509
                        clus
vv                       KRT13 MUTATED KRT13 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D90V4, binary
                 cls
clus                0   1
  KRT13 MUTATED     4   2
  KRT13 WILD-TYPE 325 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT13 MUTATED      4    2
  KRT13 WILD-TYPE  325  459
        clus
vv       KRT13 MUTATED KRT13 WILD-TYPE
  FEMALE             4             325
  MALE               2             459
[1] 2 2
[1] FALSE
D90V5, binary
                 cls
clus                0   1
  KRT13 MUTATED     4   2
  KRT13 WILD-TYPE 228 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT13 MUTATED      4    2
  KRT13 WILD-TYPE  228  506
     clus
vv    KRT13 MUTATED KRT13 WILD-TYPE
  NO              4             228
  YES             2             506
[1] 2 2
[1] FALSE
D90V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KRT13 MUTATED             3                             0                0
  KRT13 WILD-TYPE         189                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KRT13 MUTATED                   0                   0
  KRT13 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  KRT13 MUTATED                                 3
  KRT13 WILD-TYPE                             262
D90V7, multiclass
                                 clus
vv                                KRT13 MUTATED KRT13 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KRT13 MUTATED                                  0     0
  KRT13 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  KRT13 MUTATED                           0     6
  KRT13 WILD-TYPE                        38   716
D90V8, multiclass
                                  clus
vv                                 KRT13 MUTATED KRT13 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        6             716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D90V9, binary
                 cls
clus                0   1
  KRT13 MUTATED     0   6
  KRT13 WILD-TYPE  35 660
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT13 MUTATED      0    6
  KRT13 WILD-TYPE   35  660
                        clus
vv                       KRT13 MUTATED KRT13 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             6             660
[1] 2 2
[1] FALSE

Clustering(91) Variable = CNOT1 MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2               0   1
  CNOT1 MUTATED     7   1
  CNOT1 WILD-TYPE 446 333
  CNOT1 MUTATED CNOT1 WILD-TYPE 
              8             779 
  CNOT1 MUTATED CNOT1 WILD-TYPE 
              1             333 
$`CNOT1 MUTATED`
TCGA-19-2629 TCGA-DB-A4XC TCGA-DU-5849 TCGA-DU-6392 TCGA-HT-7858 TCGA-HT-A616 
       24.23        46.72        14.56       211.17        50.63         1.81 
TCGA-S9-A6TV TCGA-S9-A7IY 
       18.77        23.51 

$`CNOT1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A4XE 
       78.28        46.42        18.84        30.21        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5851 TCGA-DU-5852 
       17.46        13.71        18.61        18.02        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7860 
       14.53        39.48        19.23        39.09         0.23         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A617 TCGA-HT-A618 
        0.10         5.33         2.70        16.93        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       87.12        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IZ TCGA-S9-A7J0 
       14.07        36.13         7.92        26.93        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  CNOT1 MUTATED CNOT1 WILD-TYPE 
           1.81            0.03 
  CNOT1 MUTATED CNOT1 WILD-TYPE 
         211.17          182.33 
  CNOT1 MUTATED CNOT1 WILD-TYPE 
          23.87           16.73 
[1] "1.8 - 211.2 (23.9)" "0.0 - 182.3 (16.7)"
[1] "hr=" "6.1"
D91V2, continuous
D91V3, binary
                 cls
clus                0   1
  CNOT1 MUTATED     1   7
  CNOT1 WILD-TYPE 277 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNOT1 MUTATED      1    7
  CNOT1 WILD-TYPE  277  505
                        clus
vv                       CNOT1 MUTATED CNOT1 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             7             505
[1] 2 2
[1] FALSE
D91V4, binary
                 cls
clus                0   1
  CNOT1 MUTATED     2   6
  CNOT1 WILD-TYPE 327 455
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNOT1 MUTATED      2    6
  CNOT1 WILD-TYPE  327  455
        clus
vv       CNOT1 MUTATED CNOT1 WILD-TYPE
  FEMALE             2             327
  MALE               6             455
[1] 2 2
[1] FALSE
D91V5, binary
                 cls
clus                0   1
  CNOT1 MUTATED     2   6
  CNOT1 WILD-TYPE 230 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNOT1 MUTATED      2    6
  CNOT1 WILD-TYPE  230  502
     clus
vv    CNOT1 MUTATED CNOT1 WILD-TYPE
  NO              2             230
  YES             6             502
[1] 2 2
[1] FALSE
D91V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CNOT1 MUTATED             3                             0                3
  CNOT1 WILD-TYPE         189                             9              127
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CNOT1 MUTATED                   1                   0
  CNOT1 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  CNOT1 MUTATED                                 1
  CNOT1 WILD-TYPE                             264
D91V7, multiclass
                                 clus
vv                                CNOT1 MUTATED CNOT1 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            3             127
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CNOT1 MUTATED                                  0     0
  CNOT1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  CNOT1 MUTATED                           0     8
  CNOT1 WILD-TYPE                        38   714
D91V8, multiclass
                                  clus
vv                                 CNOT1 MUTATED CNOT1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        8             714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D91V9, binary
                 cls
clus                0   1
  CNOT1 MUTATED     0   8
  CNOT1 WILD-TYPE  35 658
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNOT1 MUTATED      0    8
  CNOT1 WILD-TYPE   35  658
                        clus
vv                       CNOT1 MUTATED CNOT1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             8             658
[1] 2 2
[1] FALSE

Clustering(92) Variable = ESR2 MUTATION ANALYSIS
D92V1, survival
                sevent
clus2              0   1
  ESR2 MUTATED     2   4
  ESR2 WILD-TYPE 451 330
  ESR2 MUTATED ESR2 WILD-TYPE 
             6            781 
  ESR2 MUTATED ESR2 WILD-TYPE 
             4            330 
$`ESR2 MUTATED`
TCGA-06-0648 TCGA-41-3392 TCGA-76-4927 TCGA-DB-5274 TCGA-DU-6392 TCGA-DU-6399 
        9.80         0.99        17.59        75.25       211.17        65.75 

$`ESR2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
        4.54         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
        6.61       122.73        81.96        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6400 
       52.11        22.42        49.02        75.16        46.06         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  ESR2 MUTATED ESR2 WILD-TYPE 
          0.99           0.03 
  ESR2 MUTATED ESR2 WILD-TYPE 
        211.17         182.33 
  ESR2 MUTATED ESR2 WILD-TYPE 
         41.67          16.80 
[1] "1.0 - 211.2 (41.7)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.3"
D92V2, continuous
D92V3, binary
                cls
clus               0   1
  ESR2 MUTATED     3   3
  ESR2 WILD-TYPE 275 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR2 MUTATED      3    3
  ESR2 WILD-TYPE  275  509
                        clus
vv                       ESR2 MUTATED ESR2 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D92V4, binary
                cls
clus               0   1
  ESR2 MUTATED     2   4
  ESR2 WILD-TYPE 327 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR2 MUTATED      2    4
  ESR2 WILD-TYPE  327  457
        clus
vv       ESR2 MUTATED ESR2 WILD-TYPE
  FEMALE            2            327
  MALE              4            457
[1] 2 2
[1] FALSE
D92V5, binary
                cls
clus               0   1
  ESR2 MUTATED     1   4
  ESR2 WILD-TYPE 231 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR2 MUTATED      1    4
  ESR2 WILD-TYPE  231  504
     clus
vv    ESR2 MUTATED ESR2 WILD-TYPE
  NO             1            231
  YES            4            504
[1] 2 2
[1] FALSE
D92V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ESR2 MUTATED             1                             0                1
  ESR2 WILD-TYPE         191                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ESR2 MUTATED                   1                   0
  ESR2 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  ESR2 MUTATED                                 3
  ESR2 WILD-TYPE                             262
D92V7, multiclass
                                 clus
vv                                ESR2 MUTATED ESR2 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ESR2 MUTATED                                  0     0
  ESR2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  ESR2 MUTATED                           0     6
  ESR2 WILD-TYPE                        38   716
D92V8, multiclass
                                  clus
vv                                 ESR2 MUTATED ESR2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D92V9, binary
                cls
clus               0   1
  ESR2 MUTATED     0   5
  ESR2 WILD-TYPE  35 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR2 MUTATED      0    5
  ESR2 WILD-TYPE   35  661
                        clus
vv                       ESR2 MUTATED ESR2 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(93) Variable = GRHL3 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2               0   1
  GRHL3 MUTATED     5   3
  GRHL3 WILD-TYPE 448 331
  GRHL3 MUTATED GRHL3 WILD-TYPE 
              8             779 
  GRHL3 MUTATED GRHL3 WILD-TYPE 
              3             331 
$`GRHL3 MUTATED`
TCGA-06-0145 TCGA-06-0645 TCGA-06-5417 TCGA-32-1979 TCGA-DB-5270 TCGA-DU-6392 
        2.33         5.75         5.10        19.50       122.73       211.17 
TCGA-FG-A70Z TCGA-HT-7860 
       10.78         0.49 

$`GRHL3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        0.20        10.29         2.20        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       20.42        48.69        12.62         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
       39.09         0.23        50.63        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  GRHL3 MUTATED GRHL3 WILD-TYPE 
           0.49            0.03 
  GRHL3 MUTATED GRHL3 WILD-TYPE 
         211.17          182.33 
  GRHL3 MUTATED GRHL3 WILD-TYPE 
          8.265          16.830 
[1] "0.5 - 211.2 (8.3)"  "0.0 - 182.3 (16.8)"
[1] "hr=" "1.7"
D93V2, continuous
D93V3, binary
                 cls
clus                0   1
  GRHL3 MUTATED     4   4
  GRHL3 WILD-TYPE 274 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRHL3 MUTATED      4    4
  GRHL3 WILD-TYPE  274  508
                        clus
vv                       GRHL3 MUTATED GRHL3 WILD-TYPE
  BRAIN                              4             274
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D93V4, binary
                 cls
clus                0   1
  GRHL3 MUTATED     8   0
  GRHL3 WILD-TYPE 321 461
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRHL3 MUTATED      8    0
  GRHL3 WILD-TYPE  321  461
        clus
vv       GRHL3 MUTATED GRHL3 WILD-TYPE
  FEMALE             8             321
  MALE               0             461
[1] 2 2
[1] FALSE
D93V5, binary
                 cls
clus                0   1
  GRHL3 MUTATED     3   3
  GRHL3 WILD-TYPE 229 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRHL3 MUTATED      3    3
  GRHL3 WILD-TYPE  229  505
     clus
vv    GRHL3 MUTATED GRHL3 WILD-TYPE
  NO              3             229
  YES             3             505
[1] 2 2
[1] FALSE
D93V6, continuous
[1] "Remove cluster labels:" "GRHL3 MUTATED"         
clus
  GRHL3 MUTATED GRHL3 WILD-TYPE 
              1             509 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5418 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-5858      TCGA-06-5859      TCGA-06-6388      TCGA-06-6389 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-06-6390      TCGA-06-6695      TCGA-06-6697      TCGA-06-6700 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-08-0386      TCGA-12-0615      TCGA-12-0616      TCGA-12-0618 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-12-0619      TCGA-12-0688      TCGA-12-0692      TCGA-12-0821 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-14-0786      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0817      TCGA-14-0862      TCGA-14-0871 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-14-1456 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-19-1390      TCGA-19-1790 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2631 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5954      TCGA-19-5958      TCGA-19-5959 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5219      TCGA-28-5220      TCGA-32-1982 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-32-1986      TCGA-32-2615      TCGA-32-2638      TCGA-32-4213 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2573      TCGA-41-2575      TCGA-74-6573 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6285      TCGA-76-6286 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6661      TCGA-76-6662 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-76-6663      TCGA-76-6664      TCGA-81-5910      TCGA-CS-4938 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395      TCGA-CS-5396 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6290 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667      TCGA-CS-6668 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-A7YO      TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-E1-A7Z6      TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-FG-7638      TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-FG-A6J1      TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-FG-A87Q      TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-7689      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-8113      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-A5RA      TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-A618      TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-HT-A74L      TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-P5-A5F0      TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-P5-A731      TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-RY-A845      TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A6TZ      TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A6UB      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A7IZ      TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A7J3      TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A7R4      TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-S9-A89Z      TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TM-A7CA      TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TM-A84F      TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TM-A84J      TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TM-A84Q      TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TQ-A7RG      TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TQ-A7RO      TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TQ-A7RS      TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-VM-A8CE      TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858 
"GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" "GRHL3 WILD-TYPE" 
     TCGA-WY-A859 
"GRHL3 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GRHL3 MUTATED             2                             0                2
  GRHL3 WILD-TYPE         190                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GRHL3 MUTATED                   0                   0
  GRHL3 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  GRHL3 MUTATED                                 4
  GRHL3 WILD-TYPE                             261
D93V7, multiclass
                                 clus
vv                                GRHL3 MUTATED GRHL3 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             4             261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GRHL3 MUTATED                                  0     0
  GRHL3 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  GRHL3 MUTATED                           1     7
  GRHL3 WILD-TYPE                        37   715
D93V8, multiclass
                                  clus
vv                                 GRHL3 MUTATED GRHL3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D93V9, binary
                 cls
clus                0   1
  GRHL3 MUTATED     0   8
  GRHL3 WILD-TYPE  35 658
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRHL3 MUTATED      0    8
  GRHL3 WILD-TYPE   35  658
                        clus
vv                       GRHL3 MUTATED GRHL3 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             8             658
[1] 2 2
[1] FALSE

Clustering(94) Variable = RASGRF2 MUTATION ANALYSIS
D94V1, survival
                   sevent
clus2                 0   1
  RASGRF2 MUTATED     5   1
  RASGRF2 WILD-TYPE 448 333
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
                6               781 
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
                1               333 
$`RASGRF2 MUTATED`
TCGA-06-5414 TCGA-28-5209 TCGA-DB-A64X TCGA-DU-6392 TCGA-FG-6692 TCGA-QH-A6X4 
        8.98         2.53        18.51       211.17        18.44        14.53 

$`RASGRF2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       11.28        17.88        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7634 
       36.82        18.77        14.93        42.54        41.33        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X5 
       13.61        12.23         2.20         9.17        10.29        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
             2.53              0.03 
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
           211.17            182.33 
  RASGRF2 MUTATED RASGRF2 WILD-TYPE 
           16.485            16.830 
[1] "2.5 - 211.2 (16.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "4"  
D94V2, continuous
D94V3, binary
                   cls
clus                  0   1
  RASGRF2 MUTATED     2   4
  RASGRF2 WILD-TYPE 276 508
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RASGRF2 MUTATED      2    4
  RASGRF2 WILD-TYPE  276  508
                        clus
vv                       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  BRAIN                                2               276
  CENTRAL NERVOUS SYSTEM               4               508
[1] 2 2
[1] FALSE
D94V4, binary
                   cls
clus                  0   1
  RASGRF2 MUTATED     3   3
  RASGRF2 WILD-TYPE 326 458
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RASGRF2 MUTATED      3    3
  RASGRF2 WILD-TYPE  326  458
        clus
vv       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  FEMALE               3               326
  MALE                 3               458
[1] 2 2
[1] FALSE
D94V5, binary
                   cls
clus                  0   1
  RASGRF2 MUTATED     0   6
  RASGRF2 WILD-TYPE 232 502
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RASGRF2 MUTATED      0    6
  RASGRF2 WILD-TYPE  232  502
     clus
vv    RASGRF2 MUTATED RASGRF2 WILD-TYPE
  NO                0               232
  YES               6               502
[1] 2 2
[1] FALSE
D94V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  RASGRF2 MUTATED             2                             0                1
  RASGRF2 WILD-TYPE         190                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  RASGRF2 MUTATED                   1                   0
  RASGRF2 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  RASGRF2 MUTATED                                 2
  RASGRF2 WILD-TYPE                             263
D94V7, multiclass
                                 clus
vv                                RASGRF2 MUTATED RASGRF2 WILD-TYPE
  ASTROCYTOMA                                   2               190
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               2               263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RASGRF2 MUTATED                                  0     0
  RASGRF2 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  RASGRF2 MUTATED                           0     6
  RASGRF2 WILD-TYPE                        38   716
D94V8, multiclass
                                  clus
vv                                 RASGRF2 MUTATED RASGRF2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          6               716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D94V9, binary
                   cls
clus                  0   1
  RASGRF2 MUTATED     0   5
  RASGRF2 WILD-TYPE  35 661
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RASGRF2 MUTATED      0    5
  RASGRF2 WILD-TYPE   35  661
                        clus
vv                       RASGRF2 MUTATED RASGRF2 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               5               661
[1] 2 2
[1] FALSE

Clustering(95) Variable = PAK1 MUTATION ANALYSIS
D95V1, survival
                sevent
clus2              0   1
  PAK1 MUTATED     2   1
  PAK1 WILD-TYPE 451 333
  PAK1 MUTATED PAK1 WILD-TYPE 
             3            784 
  PAK1 MUTATED PAK1 WILD-TYPE 
             1            333 
$`PAK1 MUTATED`
TCGA-76-6662 TCGA-DU-6392 TCGA-HT-7873 
       34.45       211.17        23.61 

$`PAK1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        5.03        23.90        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63         0.49        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  PAK1 MUTATED PAK1 WILD-TYPE 
         23.61           0.03 
  PAK1 MUTATED PAK1 WILD-TYPE 
        211.17         182.33 
  PAK1 MUTATED PAK1 WILD-TYPE 
        34.450         16.765 
[1] "23.6 - 211.2 (34.5)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "3.9"
D95V2, continuous
D95V3, binary
                cls
clus               0   1
  PAK1 MUTATED     1   2
  PAK1 WILD-TYPE 277 510
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK1 MUTATED      1    2
  PAK1 WILD-TYPE  277  510
                        clus
vv                       PAK1 MUTATED PAK1 WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            2            510
[1] 2 2
[1] FALSE
D95V4, binary
                cls
clus               0   1
  PAK1 MUTATED     1   2
  PAK1 WILD-TYPE 328 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK1 MUTATED      1    2
  PAK1 WILD-TYPE  328  459
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  FEMALE            1            328
  MALE              2            459
[1] 2 2
[1] FALSE
D95V5, binary
                cls
clus               0   1
  PAK1 MUTATED     0   3
  PAK1 WILD-TYPE 232 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK1 MUTATED      0    3
  PAK1 WILD-TYPE  232  505
     clus
vv    PAK1 MUTATED PAK1 WILD-TYPE
  NO             0            232
  YES            3            505
[1] 2 2
[1] FALSE
D95V6, continuous
[1] "Remove cluster labels:" "PAK1 MUTATED"          
clus
  PAK1 MUTATED PAK1 WILD-TYPE 
             1            509 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0167     TCGA-06-0168     TCGA-06-0169 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0185 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0188     TCGA-06-0192     TCGA-06-0195     TCGA-06-0214 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0238     TCGA-06-0240     TCGA-06-0241 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0646     TCGA-06-0648     TCGA-06-0686 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0878 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-5408     TCGA-06-5410     TCGA-06-5411     TCGA-06-5412 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-5413     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-5418     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6695     TCGA-06-6697 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-06-6700     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5299     TCGA-12-5301 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-14-0740     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-4157     TCGA-15-0742     TCGA-19-1390 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5954     TCGA-19-5958 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5139     TCGA-26-6173 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-2502     TCGA-28-2509 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-28-2513     TCGA-28-2514     TCGA-28-5204     TCGA-28-5207 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5219     TCGA-28-5220 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-2615     TCGA-32-2638 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-32-4213     TCGA-41-2571     TCGA-41-2573     TCGA-41-2575 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-76-6663     TCGA-76-6664     TCGA-81-5910     TCGA-CS-4938 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395     TCGA-CS-5396 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6290 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667     TCGA-CS-6668 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE     TCGA-DB-A64L 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S     TCGA-DB-A64U 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X     TCGA-DB-A75L 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D     TCGA-DH-A66F 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU     TCGA-DH-A7UV 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853     TCGA-DU-5854 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871     TCGA-DU-5874 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403     TCGA-DU-6404 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013     TCGA-DU-7015 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294     TCGA-DU-7298 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8165 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-A7YE     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-A7YK     TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-A7YO     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7636 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-FG-7638     TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-FG-A6J1     TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-7607     TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-8113     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-A5RA     TCGA-HT-A5RC     TCGA-HT-A615     TCGA-HT-A617 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-A618     TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HT-A74L     TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-P5-A731     TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-RY-A845     TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A6TZ     TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A6U5     TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A6UB     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A6WN     TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A7IZ     TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A7J3     TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A7R4     TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-S9-A89Z     TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TM-A7CA     TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TM-A84F     TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TM-A84J     TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TM-A84Q     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TQ-A7RO     TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TQ-A7RS     TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-VM-A8CE     TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-WY-A859 
"PAK1 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PAK1 MUTATED             1                             0                1
  PAK1 WILD-TYPE         191                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PAK1 MUTATED                   0                   0
  PAK1 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PAK1 MUTATED                                 1
  PAK1 WILD-TYPE                             264
D95V7, multiclass
                                 clus
vv                                PAK1 MUTATED PAK1 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PAK1 MUTATED                                  0     0
  PAK1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PAK1 MUTATED                           0     3
  PAK1 WILD-TYPE                        38   719
D95V8, multiclass
                                  clus
vv                                 PAK1 MUTATED PAK1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D95V9, binary
                cls
clus               0   1
  PAK1 MUTATED     0   3
  PAK1 WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK1 MUTATED      0    3
  PAK1 WILD-TYPE   35  663
                        clus
vv                       PAK1 MUTATED PAK1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(96) Variable = SLC35A2 MUTATION ANALYSIS
D96V1, survival
                   sevent
clus2                 0   1
  SLC35A2 MUTATED     1   2
  SLC35A2 WILD-TYPE 452 332
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
                3               784 
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
                2               332 
$`SLC35A2 MUTATED`
TCGA-14-1825 TCGA-DB-A64R TCGA-DU-7299 
        7.63        31.40        44.02 

$`SLC35A2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       40.96        17.85         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
       30.12         5.98        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 
       26.30        10.36         7.96        94.32        18.94        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
             7.63              0.03 
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
            44.02            211.17 
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
           31.400            16.815 
[1] "7.6 - 44.0 (31.4)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.3"
D96V2, continuous
D96V3, binary
                   cls
clus                  0   1
  SLC35A2 MUTATED     1   2
  SLC35A2 WILD-TYPE 277 510
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35A2 MUTATED      1    2
  SLC35A2 WILD-TYPE  277  510
                        clus
vv                       SLC35A2 MUTATED SLC35A2 WILD-TYPE
  BRAIN                                1               277
  CENTRAL NERVOUS SYSTEM               2               510
[1] 2 2
[1] FALSE
D96V4, binary
                   cls
clus                  0   1
  SLC35A2 MUTATED     1   2
  SLC35A2 WILD-TYPE 328 459
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35A2 MUTATED      1    2
  SLC35A2 WILD-TYPE  328  459
        clus
vv       SLC35A2 MUTATED SLC35A2 WILD-TYPE
  FEMALE               1               328
  MALE                 2               459
[1] 2 2
[1] FALSE
D96V5, binary
                   cls
clus                  0   1
  SLC35A2 MUTATED     1   2
  SLC35A2 WILD-TYPE 231 506
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35A2 MUTATED      1    2
  SLC35A2 WILD-TYPE  231  506
     clus
vv    SLC35A2 MUTATED SLC35A2 WILD-TYPE
  NO                1               231
  YES               2               506
[1] 2 2
[1] FALSE
D96V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SLC35A2 MUTATED             1                             0                0
  SLC35A2 WILD-TYPE         191                             9              130
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SLC35A2 MUTATED                   1                   0
  SLC35A2 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  SLC35A2 MUTATED                                 1
  SLC35A2 WILD-TYPE                             264
D96V7, multiclass
                                 clus
vv                                SLC35A2 MUTATED SLC35A2 WILD-TYPE
  ASTROCYTOMA                                   1               191
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              0               130
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               1               264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SLC35A2 MUTATED                                  0     0
  SLC35A2 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  SLC35A2 MUTATED                           0     2
  SLC35A2 WILD-TYPE                        38   720
D96V8, multiclass
[1] "Remove cluster labels:" "SLC35A2 MUTATED"       
clus
  SLC35A2 MUTATED SLC35A2 WILD-TYPE 
                2               772 
       TCGA-02-0003        TCGA-02-0033        TCGA-02-0047        TCGA-02-0055 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-02-2470        TCGA-02-2483        TCGA-02-2485        TCGA-02-2486 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0119        TCGA-06-0122        TCGA-06-0124        TCGA-06-0126 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0128        TCGA-06-0129        TCGA-06-0130        TCGA-06-0132 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0137        TCGA-06-0139        TCGA-06-0140        TCGA-06-0141 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0142        TCGA-06-0145        TCGA-06-0151        TCGA-06-0152 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0154        TCGA-06-0155        TCGA-06-0157        TCGA-06-0158 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0165        TCGA-06-0166        TCGA-06-0167        TCGA-06-0168 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0173        TCGA-06-0174        TCGA-06-0178 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0184        TCGA-06-0185        TCGA-06-0188        TCGA-06-0189 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0195        TCGA-06-0209        TCGA-06-0213 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0214        TCGA-06-0216        TCGA-06-0219        TCGA-06-0237 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0644 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-1804        TCGA-06-1806        TCGA-06-2557        TCGA-06-2558 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-2559        TCGA-06-2561        TCGA-06-2562        TCGA-06-2563 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-2564        TCGA-06-2565        TCGA-06-2567        TCGA-06-2569 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-2570        TCGA-06-5408        TCGA-06-5410        TCGA-06-5411 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-5412        TCGA-06-5413        TCGA-06-5414        TCGA-06-5415 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-5417        TCGA-06-5418        TCGA-06-5856        TCGA-06-5858 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-5859        TCGA-06-6388        TCGA-06-6389        TCGA-06-6390 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-6391        TCGA-06-6693        TCGA-06-6694        TCGA-06-6695 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-6697        TCGA-06-6698        TCGA-06-6699        TCGA-06-6700 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-06-6701        TCGA-08-0386        TCGA-12-0615        TCGA-12-0616 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0688        TCGA-12-0692 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-12-0821        TCGA-12-1597        TCGA-12-3649        TCGA-12-3650 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5295        TCGA-12-5299 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-12-5301        TCGA-14-0740        TCGA-14-0781        TCGA-14-0786 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-14-0787        TCGA-14-0789        TCGA-14-0790        TCGA-14-0813 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-14-0817        TCGA-14-0862        TCGA-14-0871        TCGA-14-1043 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-14-1395        TCGA-14-1450        TCGA-14-1456        TCGA-14-1823 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-14-1829        TCGA-14-2554        TCGA-14-3476        TCGA-14-4157 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-15-0742        TCGA-15-1444        TCGA-16-0846        TCGA-16-0861 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-16-1045        TCGA-19-1390        TCGA-19-1790        TCGA-19-2619 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-19-2620        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4068        TCGA-19-5947 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5958        TCGA-19-5959 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1439        TCGA-26-1442        TCGA-26-5132 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-28-1747        TCGA-28-1753        TCGA-28-2499        TCGA-28-2502 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1977        TCGA-32-1979        TCGA-32-1980 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1991        TCGA-32-2491 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2632 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-32-2634        TCGA-32-2638        TCGA-32-4208        TCGA-32-4209 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-76-4925 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-76-4926        TCGA-76-4927        TCGA-76-4928        TCGA-76-4929 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-76-4931        TCGA-76-4932        TCGA-76-4934        TCGA-76-4935 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6280        TCGA-76-6282 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-76-6285        TCGA-76-6286        TCGA-76-6656        TCGA-76-6657 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-76-6661        TCGA-76-6662        TCGA-76-6663        TCGA-76-6664 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-81-5910        TCGA-81-5911        TCGA-87-5896        TCGA-CS-4938 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-CS-4941        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5395 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-CS-5396        TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-CS-6665        TCGA-CS-6666        TCGA-CS-6667        TCGA-CS-6668 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-CS-6669        TCGA-CS-6670        TCGA-DB-5270        TCGA-DB-5273 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-A4XA        TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-A4XE        TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-A64L        TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64S 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W        TCGA-DB-A64X 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M        TCGA-DB-A75O 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DH-5144        TCGA-DH-A669        TCGA-DH-A66B        TCGA-DH-A66D 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7UR        TCGA-DH-A7US 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DH-A7UT        TCGA-DH-A7UU        TCGA-DH-A7UV        TCGA-DU-5847 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392        TCGA-DU-6393 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-DU-A6S2        TCGA-DU-A6S3        TCGA-DU-A6S6 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-A6S7        TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-A76O        TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7T8 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-A7TA        TCGA-DU-A7TB        TCGA-DU-A7TC        TCGA-DU-A7TD 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-DU-A7TG        TCGA-DU-A7TJ        TCGA-E1-5302        TCGA-E1-5303 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322        TCGA-E1-A7YD 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-A7YE        TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-A7YK        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-A7YO        TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YU 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-E1-A7Z3        TCGA-E1-A7Z4        TCGA-E1-A7Z6        TCGA-EZ-7264 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-F6-A8O3        TCGA-F6-A8O4        TCGA-FG-5962        TCGA-FG-5963 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-6692        TCGA-FG-7634 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-FG-A60K 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-A60L        TCGA-FG-A6IZ        TCGA-FG-A6J1        TCGA-FG-A6J3 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-A70Y        TCGA-FG-A70Z        TCGA-FG-A710        TCGA-FG-A711 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-FG-A713        TCGA-FG-A87N        TCGA-FG-A87Q        TCGA-FN-7833 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7690        TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7694        TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7856        TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7873        TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7879        TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-7884        TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-8012        TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-8019        TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-8107        TCGA-HT-8108        TCGA-HT-8109        TCGA-HT-8110 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114        TCGA-HT-8558 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-8563        TCGA-HT-8564        TCGA-HT-A4DS        TCGA-HT-A4DV 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RA 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-A5RB        TCGA-HT-A5RC        TCGA-HT-A614        TCGA-HT-A615 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-A616        TCGA-HT-A617        TCGA-HT-A618        TCGA-HT-A619 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A61C        TCGA-HT-A74H 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HT-A74J        TCGA-HT-A74K        TCGA-HT-A74L        TCGA-HT-A74O 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-HW-A5KL        TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-KT-A74X        TCGA-KT-A7W1        TCGA-P5-A5ET        TCGA-P5-A5EU 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-P5-A72X        TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-P5-A733        TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-P5-A77W        TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-QH-A65R        TCGA-QH-A65S        TCGA-QH-A65V        TCGA-QH-A65X 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-QH-A65Z        TCGA-QH-A6CS        TCGA-QH-A6CU        TCGA-QH-A6CV 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-QH-A6CW        TCGA-QH-A6CX        TCGA-QH-A6CY        TCGA-QH-A6CZ 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-QH-A6X3        TCGA-QH-A6X4        TCGA-QH-A6X5        TCGA-QH-A6X8 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC        TCGA-QH-A86X 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML        TCGA-R8-A6MO 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-R8-A73M        TCGA-RY-A83X        TCGA-RY-A83Y        TCGA-RY-A83Z 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-RY-A843        TCGA-RY-A845        TCGA-RY-A847        TCGA-S9-A6TS 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TW        TCGA-S9-A6TX 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6TY        TCGA-S9-A6TZ        TCGA-S9-A6U0        TCGA-S9-A6U1 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6U2        TCGA-S9-A6U5        TCGA-S9-A6U6        TCGA-S9-A6U8 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6U9        TCGA-S9-A6UA        TCGA-S9-A6UB        TCGA-S9-A6WD 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6WE        TCGA-S9-A6WG        TCGA-S9-A6WH        TCGA-S9-A6WI 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6WL        TCGA-S9-A6WM        TCGA-S9-A6WN        TCGA-S9-A6WO 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A6WP        TCGA-S9-A6WQ        TCGA-S9-A7IQ        TCGA-S9-A7IS 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A7IX        TCGA-S9-A7IY        TCGA-S9-A7IZ        TCGA-S9-A7J0 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7J3        TCGA-S9-A7QW 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A7QX        TCGA-S9-A7QY        TCGA-S9-A7QZ        TCGA-S9-A7R1 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A7R2        TCGA-S9-A7R3        TCGA-S9-A7R4        TCGA-S9-A7R7 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-S9-A7R8        TCGA-S9-A89V        TCGA-S9-A89Z        TCGA-TM-A7C3 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TM-A7C4        TCGA-TM-A7C5        TCGA-TM-A7CA        TCGA-TM-A7CF 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TM-A84B        TCGA-TM-A84C        TCGA-TM-A84F        TCGA-TM-A84G 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TM-A84H        TCGA-TM-A84I        TCGA-TM-A84J        TCGA-TM-A84L 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TM-A84M        TCGA-TM-A84O        TCGA-TM-A84Q        TCGA-TM-A84R 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TM-A84S        TCGA-TM-A84T        TCGA-TQ-A7RF        TCGA-TQ-A7RG 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TQ-A7RH        TCGA-TQ-A7RI        TCGA-TQ-A7RJ        TCGA-TQ-A7RK 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TQ-A7RM        TCGA-TQ-A7RN        TCGA-TQ-A7RO        TCGA-TQ-A7RP 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RU 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-TQ-A7RV        TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-VM-A8CD        TCGA-VM-A8CE        TCGA-VM-A8CF        TCGA-VM-A8CH 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-VV-A829        TCGA-VW-A7QS        TCGA-VW-A8FI        TCGA-W9-A837 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-WH-A86K        TCGA-WY-A858        TCGA-WY-A859        TCGA-WY-A85A 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
       TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D        TCGA-WY-A85E 
"SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" "SLC35A2 WILD-TYPE" 
D96V9, binary
                   cls
clus                  0   1
  SLC35A2 MUTATED     1   2
  SLC35A2 WILD-TYPE  34 664
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35A2 MUTATED      1    2
  SLC35A2 WILD-TYPE   34  664
                        clus
vv                       SLC35A2 MUTATED SLC35A2 WILD-TYPE
  HISPANIC OR LATINO                   1                34
  NOT HISPANIC OR LATINO               2               664
[1] 2 2
[1] FALSE

Clustering(97) Variable = LGALS13 MUTATION ANALYSIS
D97V1, survival
                   sevent
clus2                 0   1
  LGALS13 MUTATED     2   2
  LGALS13 WILD-TYPE 451 332
  LGALS13 MUTATED LGALS13 WILD-TYPE 
                4               783 
  LGALS13 MUTATED LGALS13 WILD-TYPE 
                2               332 
$`LGALS13 MUTATED`
TCGA-06-0648 TCGA-DB-5276 TCGA-E1-5319 TCGA-TQ-A7RP 
        9.80        72.92        95.57        30.05 

$`LGALS13 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5322 TCGA-E1-A7YD 
       79.99        57.93       134.27        78.21       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  LGALS13 MUTATED LGALS13 WILD-TYPE 
             9.80              0.03 
  LGALS13 MUTATED LGALS13 WILD-TYPE 
            95.57            211.17 
  LGALS13 MUTATED LGALS13 WILD-TYPE 
           51.485            16.800 
[1] "9.8 - 95.6 (51.5)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D97V2, continuous
D97V3, binary
                   cls
clus                  0   1
  LGALS13 MUTATED     1   3
  LGALS13 WILD-TYPE 277 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LGALS13 MUTATED      1    3
  LGALS13 WILD-TYPE  277  509
                        clus
vv                       LGALS13 MUTATED LGALS13 WILD-TYPE
  BRAIN                                1               277
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D97V4, binary
                   cls
clus                  0   1
  LGALS13 MUTATED     1   3
  LGALS13 WILD-TYPE 328 458
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LGALS13 MUTATED      1    3
  LGALS13 WILD-TYPE  328  458
        clus
vv       LGALS13 MUTATED LGALS13 WILD-TYPE
  FEMALE               1               328
  MALE                 3               458
[1] 2 2
[1] FALSE
D97V5, binary
                   cls
clus                  0   1
  LGALS13 MUTATED     1   3
  LGALS13 WILD-TYPE 231 505
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LGALS13 MUTATED      1    3
  LGALS13 WILD-TYPE  231  505
     clus
vv    LGALS13 MUTATED LGALS13 WILD-TYPE
  NO                1               231
  YES               3               505
[1] 2 2
[1] FALSE
D97V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  LGALS13 MUTATED             0                             0                2
  LGALS13 WILD-TYPE         192                             9              128
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  LGALS13 MUTATED                   1                   0
  LGALS13 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  LGALS13 MUTATED                                 1
  LGALS13 WILD-TYPE                             264
D97V7, multiclass
                                 clus
vv                                LGALS13 MUTATED LGALS13 WILD-TYPE
  ASTROCYTOMA                                   0               192
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              2               128
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               1               264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  LGALS13 MUTATED                                  0     0
  LGALS13 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  LGALS13 MUTATED                           1     3
  LGALS13 WILD-TYPE                        37   719
D97V8, multiclass
                                  clus
vv                                 LGALS13 MUTATED LGALS13 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      1                37
  WHITE                                          3               719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D97V9, binary
                   cls
clus                  0   1
  LGALS13 MUTATED     1   3
  LGALS13 WILD-TYPE  34 663
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LGALS13 MUTATED      1    3
  LGALS13 WILD-TYPE   34  663
                        clus
vv                       LGALS13 MUTATED LGALS13 WILD-TYPE
  HISPANIC OR LATINO                   1                34
  NOT HISPANIC OR LATINO               3               663
[1] 2 2
[1] FALSE

Clustering(98) Variable = CDKN2A MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2                0   1
  CDKN2A MUTATED     4   2
  CDKN2A WILD-TYPE 449 332
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               6              781 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2              332 
$`CDKN2A MUTATED`
TCGA-06-2557 TCGA-32-2638 TCGA-CS-4943 TCGA-DU-6392 TCGA-TQ-A7RH TCGA-TQ-A7RU 
        1.08        25.18        18.15       211.17        15.98        33.93 

$`CDKN2A WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        15.32        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        4.70         7.69        43.89        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       14.93        23.80        21.37        19.69         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       25.87        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            1.08             0.03 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          211.17           182.33 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          21.665           16.800 
[1] "1.1 - 211.2 (21.7)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.3"
D98V2, continuous
D98V3, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     2   4
  CDKN2A WILD-TYPE 276 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      2    4
  CDKN2A WILD-TYPE  276  508
                        clus
vv                       CDKN2A MUTATED CDKN2A WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D98V4, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     1   5
  CDKN2A WILD-TYPE 328 456
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      1    5
  CDKN2A WILD-TYPE  328  456
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              1              328
  MALE                5              456
[1] 2 2
[1] FALSE
D98V5, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     4   2
  CDKN2A WILD-TYPE 228 506
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      4    2
  CDKN2A WILD-TYPE  228  506
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               4              228
  YES              2              506
[1] 2 2
[1] FALSE
D98V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CDKN2A MUTATED             2                             0                1
  CDKN2A WILD-TYPE         190                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CDKN2A MUTATED                   1                   0
  CDKN2A WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  CDKN2A MUTATED                                 2
  CDKN2A WILD-TYPE                             263
D98V7, multiclass
                                 clus
vv                                CDKN2A MUTATED CDKN2A WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CDKN2A MUTATED                                  0     0
  CDKN2A WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  CDKN2A MUTATED                           2     4
  CDKN2A WILD-TYPE                        36   718
D98V8, multiclass
                                  clus
vv                                 CDKN2A MUTATED CDKN2A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     2               36
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D98V9, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     2   3
  CDKN2A WILD-TYPE  33 663
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      2    3
  CDKN2A WILD-TYPE   33  663
                        clus
vv                       CDKN2A MUTATED CDKN2A WILD-TYPE
  HISPANIC OR LATINO                  2               33
  NOT HISPANIC OR LATINO              3              663
[1] 2 2
[1] FALSE

Clustering(99) Variable = DOCK5 MUTATION ANALYSIS
D99V1, survival
                 sevent
clus2               0   1
  DOCK5 MUTATED    10  10
  DOCK5 WILD-TYPE 443 324
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             20             767 
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             10             324 
$`DOCK5 MUTATED`
TCGA-06-0124 TCGA-06-0155 TCGA-06-0174 TCGA-06-0744 TCGA-06-5859 TCGA-28-1753 
       20.38        10.45         3.22        46.88         4.57         1.22 
TCGA-32-2632 TCGA-41-3915 TCGA-74-6578 TCGA-76-4932 TCGA-CS-6186 TCGA-CS-6665 
        8.84        11.84        14.33        47.93        17.69        12.43 
TCGA-DH-A66D TCGA-DH-A66G TCGA-DU-6392 TCGA-DU-6405 TCGA-DU-A5TT TCGA-HT-7467 
       27.81        17.19       211.17        19.89        24.43         0.10 
TCGA-TM-A7C3 TCGA-TQ-A7RJ 
       54.77        40.41 

$`DOCK5 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 
       15.45        20.32         2.70         6.15         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        3.29         4.47        88.14        69.90        73.84        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       14.20        26.40         7.86         2.70         2.70         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       20.78        26.76        13.61        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        4.54         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.15         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42        13.78        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.53         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        3.45        20.91         4.34         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
       17.59         3.09         3.65         9.17         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       21.01         9.96         6.38        23.84        17.95        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A7UR TCGA-DH-A7US 
        8.02        30.21        42.05        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
      133.74        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW 
       14.17        33.27        29.85        31.69        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
        5.72        27.52         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C4 
       30.05        98.63        31.59        18.71        20.48        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       19.69        15.98         2.04        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  DOCK5 MUTATED DOCK5 WILD-TYPE 
           0.10            0.03 
  DOCK5 MUTATED DOCK5 WILD-TYPE 
         211.17          182.33 
  DOCK5 MUTATED DOCK5 WILD-TYPE 
          17.44           16.80 
[1] "0.1 - 211.2 (17.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1"  
D99V2, continuous
D99V3, binary
                 cls
clus                0   1
  DOCK5 MUTATED    10  10
  DOCK5 WILD-TYPE 268 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK5 MUTATED     10   10
  DOCK5 WILD-TYPE  268  502
                        clus
vv                       DOCK5 MUTATED DOCK5 WILD-TYPE
  BRAIN                             10             268
  CENTRAL NERVOUS SYSTEM            10             502
[1] 2 2
[1] FALSE
D99V4, binary
                 cls
clus                0   1
  DOCK5 MUTATED     8  12
  DOCK5 WILD-TYPE 321 449
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK5 MUTATED      8   12
  DOCK5 WILD-TYPE  321  449
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  FEMALE             8             321
  MALE              12             449
[1] 2 2
[1] FALSE
D99V5, binary
                 cls
clus                0   1
  DOCK5 MUTATED     1  17
  DOCK5 WILD-TYPE 231 491
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK5 MUTATED      1   17
  DOCK5 WILD-TYPE  231  491
     clus
vv    DOCK5 MUTATED DOCK5 WILD-TYPE
  NO              1             231
  YES            17             491
[1] 2 2
[1] FALSE
D99V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  DOCK5 MUTATED             5                             0                2
  DOCK5 WILD-TYPE         187                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  DOCK5 MUTATED                   3                   1
  DOCK5 WILD-TYPE               187                   3
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  DOCK5 MUTATED                                 9
  DOCK5 WILD-TYPE                             256
D99V7, multiclass
                                 clus
vv                                DOCK5 MUTATED DOCK5 WILD-TYPE
  ASTROCYTOMA                                 5             187
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           3             187
  TREATED PRIMARY GBM                         1               3
  UNTREATED PRIMARY (DE NOVO) GBM             9             256
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DOCK5 MUTATED                                  0     0
  DOCK5 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  DOCK5 MUTATED                           0    19
  DOCK5 WILD-TYPE                        38   703
D99V8, multiclass
                                  clus
vv                                 DOCK5 MUTATED DOCK5 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                       19             703
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D99V9, binary
                 cls
clus                0   1
  DOCK5 MUTATED     2  16
  DOCK5 WILD-TYPE  33 650
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK5 MUTATED      2   16
  DOCK5 WILD-TYPE   33  650
                        clus
vv                       DOCK5 MUTATED DOCK5 WILD-TYPE
  HISPANIC OR LATINO                 2              33
  NOT HISPANIC OR LATINO            16             650
[1] 2 2
[1] FALSE

Clustering(100) Variable = TYRP1 MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2               0   1
  TYRP1 MUTATED     3   3
  TYRP1 WILD-TYPE 450 331
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              6             781 
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              3             331 
$`TYRP1 MUTATED`
TCGA-15-1444 TCGA-27-1837 TCGA-DU-6392 TCGA-DU-6405 TCGA-HT-A614 TCGA-S9-A6WL 
       50.53        14.04       211.17        19.89         2.70        31.10 

$`TYRP1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.42        13.78         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
      133.74        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
       27.35         0.10         5.33        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       85.55        38.56        84.99        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  TYRP1 MUTATED TYRP1 WILD-TYPE 
           2.70            0.03 
  TYRP1 MUTATED TYRP1 WILD-TYPE 
         211.17          182.33 
  TYRP1 MUTATED TYRP1 WILD-TYPE 
         25.495          16.800 
[1] "2.7 - 211.2 (25.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.6"
D100V2, continuous
D100V3, binary
                 cls
clus                0   1
  TYRP1 MUTATED     2   4
  TYRP1 WILD-TYPE 276 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TYRP1 MUTATED      2    4
  TYRP1 WILD-TYPE  276  508
                        clus
vv                       TYRP1 MUTATED TYRP1 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D100V4, binary
                 cls
clus                0   1
  TYRP1 MUTATED     2   4
  TYRP1 WILD-TYPE 327 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TYRP1 MUTATED      2    4
  TYRP1 WILD-TYPE  327  457
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  FEMALE             2             327
  MALE               4             457
[1] 2 2
[1] FALSE
D100V5, binary
                 cls
clus                0   1
  TYRP1 MUTATED     1   4
  TYRP1 WILD-TYPE 231 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TYRP1 MUTATED      1    4
  TYRP1 WILD-TYPE  231  504
     clus
vv    TYRP1 MUTATED TYRP1 WILD-TYPE
  NO              1             231
  YES             4             504
[1] 2 2
[1] FALSE
D100V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TYRP1 MUTATED             3                             1                1
  TYRP1 WILD-TYPE         189                             8              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TYRP1 MUTATED                   0                   0
  TYRP1 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TYRP1 MUTATED                                 1
  TYRP1 WILD-TYPE                             264
D100V7, multiclass
                                 clus
vv                                TYRP1 MUTATED TYRP1 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               1               8
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TYRP1 MUTATED                                  0     0
  TYRP1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  TYRP1 MUTATED                           0     6
  TYRP1 WILD-TYPE                        38   716
D100V8, multiclass
                                  clus
vv                                 TYRP1 MUTATED TYRP1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        6             716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D100V9, binary
                 cls
clus                0   1
  TYRP1 MUTATED     0   6
  TYRP1 WILD-TYPE  35 660
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TYRP1 MUTATED      0    6
  TYRP1 WILD-TYPE   35  660
                        clus
vv                       TYRP1 MUTATED TYRP1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             6             660
[1] 2 2
[1] FALSE

Clustering(101) Variable = CD99L2 MUTATION ANALYSIS
D101V1, survival
                  sevent
clus2                0   1
  CD99L2 MUTATED     4   1
  CD99L2 WILD-TYPE 449 333
  CD99L2 MUTATED CD99L2 WILD-TYPE 
               5              782 
  CD99L2 MUTATED CD99L2 WILD-TYPE 
               1              333 
$`CD99L2 MUTATED`
TCGA-12-0619 TCGA-DU-6392 TCGA-FG-8189 TCGA-HT-7471 TCGA-TQ-A7RG 
       34.92       211.17        22.52         0.13        19.69 

$`CD99L2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0688 
        4.96        18.02        15.35        14.73        12.99        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       20.09        14.96        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       11.54        40.11         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       14.93        23.80        21.37        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  CD99L2 MUTATED CD99L2 WILD-TYPE 
            0.13             0.03 
  CD99L2 MUTATED CD99L2 WILD-TYPE 
          211.17           182.33 
  CD99L2 MUTATED CD99L2 WILD-TYPE 
          22.520           16.765 
[1] "0.1 - 211.2 (22.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "4.3"
D101V2, continuous
D101V3, binary
                  cls
clus                 0   1
  CD99L2 MUTATED     1   4
  CD99L2 WILD-TYPE 277 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CD99L2 MUTATED      1    4
  CD99L2 WILD-TYPE  277  508
                        clus
vv                       CD99L2 MUTATED CD99L2 WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D101V4, binary
                  cls
clus                 0   1
  CD99L2 MUTATED     3   2
  CD99L2 WILD-TYPE 326 459
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CD99L2 MUTATED      3    2
  CD99L2 WILD-TYPE  326  459
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  FEMALE              3              326
  MALE                2              459
[1] 2 2
[1] FALSE
D101V5, binary
                  cls
clus                 0   1
  CD99L2 MUTATED     1   3
  CD99L2 WILD-TYPE 231 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CD99L2 MUTATED      1    3
  CD99L2 WILD-TYPE  231  505
     clus
vv    CD99L2 MUTATED CD99L2 WILD-TYPE
  NO               1              231
  YES              3              505
[1] 2 2
[1] FALSE
D101V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CD99L2 MUTATED             1                             0                1
  CD99L2 WILD-TYPE         191                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CD99L2 MUTATED                   2                   0
  CD99L2 WILD-TYPE               188                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  CD99L2 MUTATED                                 1
  CD99L2 WILD-TYPE                             264
D101V7, multiclass
                                 clus
vv                                CD99L2 MUTATED CD99L2 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            2              188
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CD99L2 MUTATED                                  0     0
  CD99L2 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  CD99L2 MUTATED                           0     5
  CD99L2 WILD-TYPE                        38   717
D101V8, multiclass
                                  clus
vv                                 CD99L2 MUTATED CD99L2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         5              717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D101V9, binary
                  cls
clus                 0   1
  CD99L2 MUTATED     1   4
  CD99L2 WILD-TYPE  34 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CD99L2 MUTATED      1    4
  CD99L2 WILD-TYPE   34  662
                        clus
vv                       CD99L2 MUTATED CD99L2 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(102) Variable = MORN5 MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2               0   1
  MORN5 MUTATED     1   2
  MORN5 WILD-TYPE 452 332
  MORN5 MUTATED MORN5 WILD-TYPE 
              3             784 
  MORN5 MUTATED MORN5 WILD-TYPE 
              2             332 
$`MORN5 MUTATED`
TCGA-41-3392 TCGA-CS-6668 TCGA-E1-A7YM 
        0.99        49.94        21.30 

$`MORN5 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       16.18        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  MORN5 MUTATED MORN5 WILD-TYPE 
           0.99            0.03 
  MORN5 MUTATED MORN5 WILD-TYPE 
          49.94          211.17 
  MORN5 MUTATED MORN5 WILD-TYPE 
         21.300          16.815 
[1] "1.0 - 49.9 (21.3)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.5"
D102V2, continuous
D102V3, binary
                 cls
clus                0   1
  MORN5 MUTATED     1   2
  MORN5 WILD-TYPE 277 510
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MORN5 MUTATED      1    2
  MORN5 WILD-TYPE  277  510
                        clus
vv                       MORN5 MUTATED MORN5 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             2             510
[1] 2 2
[1] FALSE
D102V4, binary
                 cls
clus                0   1
  MORN5 MUTATED     1   2
  MORN5 WILD-TYPE 328 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MORN5 MUTATED      1    2
  MORN5 WILD-TYPE  328  459
        clus
vv       MORN5 MUTATED MORN5 WILD-TYPE
  FEMALE             1             328
  MALE               2             459
[1] 2 2
[1] FALSE
D102V5, binary
                 cls
clus                0   1
  MORN5 MUTATED     2   1
  MORN5 WILD-TYPE 230 507
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MORN5 MUTATED      2    1
  MORN5 WILD-TYPE  230  507
     clus
vv    MORN5 MUTATED MORN5 WILD-TYPE
  NO              2             230
  YES             1             507
[1] 2 2
[1] FALSE
D102V6, continuous
[1] "Remove cluster labels:" "MORN5 MUTATED"         
clus
  MORN5 MUTATED MORN5 WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5139      TCGA-26-6173 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-2502      TCGA-28-2509 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5219      TCGA-28-5220 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-2615      TCGA-32-2638 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-32-4213      TCGA-41-2571      TCGA-41-2573      TCGA-41-2575 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-CS-4938      TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-CS-4944      TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-CS-5396      TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-CS-6290      TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YN      TCGA-E1-A7YO 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV      TCGA-E1-A7YW 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4      TCGA-E1-A7Z6 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636      TCGA-FG-7638 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT      TCGA-FG-A4MW 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L      TCGA-FG-A6J1 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713      TCGA-FG-A87Q 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475      TCGA-HT-7477 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485      TCGA-HT-7607 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686      TCGA-HT-7689 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7854 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858      TCGA-HT-7875 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105      TCGA-HT-8113 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7      TCGA-HT-A5RA 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617      TCGA-HT-A618 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C      TCGA-HT-A74L 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1      TCGA-P5-A5EU 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5F0 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6      TCGA-P5-A731 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V      TCGA-QH-A65X 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU      TCGA-QH-A6CV 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY      TCGA-QH-A6CZ 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5      TCGA-QH-A6X8 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC      TCGA-QH-A86X 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840      TCGA-RY-A845 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU      TCGA-S9-A6TV 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY      TCGA-S9-A6TZ 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2      TCGA-S9-A6U5 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA      TCGA-S9-A6UB 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG      TCGA-S9-A6WH 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM      TCGA-S9-A6WN 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ      TCGA-S9-A7IQ 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY      TCGA-S9-A7IZ 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7J3 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY      TCGA-S9-A7QZ 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3      TCGA-S9-A7R4 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V      TCGA-S9-A89Z 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5      TCGA-TM-A7CA 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C      TCGA-TM-A84F 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" "MORN5 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MORN5 MUTATED             1                             0                0
  MORN5 WILD-TYPE         191                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MORN5 MUTATED                   1                   0
  MORN5 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  MORN5 MUTATED                                 1
  MORN5 WILD-TYPE                             264
D102V7, multiclass
                                 clus
vv                                MORN5 MUTATED MORN5 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MORN5 MUTATED                                  0     0
  MORN5 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MORN5 MUTATED                           0     3
  MORN5 WILD-TYPE                        38   719
D102V8, multiclass
                                  clus
vv                                 MORN5 MUTATED MORN5 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        3             719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D102V9, binary
                 cls
clus                0   1
  MORN5 MUTATED     0   3
  MORN5 WILD-TYPE  35 663
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MORN5 MUTATED      0    3
  MORN5 WILD-TYPE   35  663
                        clus
vv                       MORN5 MUTATED MORN5 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             3             663
[1] 2 2
[1] FALSE

Clustering(103) Variable = SMARCA4 MUTATION ANALYSIS
D103V1, survival
                   sevent
clus2                 0   1
  SMARCA4 MUTATED    25   2
  SMARCA4 WILD-TYPE 428 332
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               27               760 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                2               332 
$`SMARCA4 MUTATED`
TCGA-28-5207 TCGA-CS-5393 TCGA-CS-6667 TCGA-DH-A7US TCGA-DH-A7UV TCGA-DU-6392 
       11.28        40.18         7.56        23.21        18.61       211.17 
TCGA-DU-7008 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7294 TCGA-F6-A8O3 TCGA-FG-6690 
      156.23        30.67        26.30        94.32         0.23        42.54 
TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7855 TCGA-HT-8109 TCGA-HT-A614 TCGA-HW-8322 
       17.29        31.69        19.23         5.56         2.70         6.18 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-RY-A840 TCGA-S9-A7R4 TCGA-TM-A84H TCGA-TQ-A7RV 
       14.53        13.61        28.08        30.05        30.44        61.41 
TCGA-VM-A8CF TCGA-WY-A858 TCGA-WY-A85A 
       20.02        43.96        43.40 

$`SMARCA4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       14.93        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       64.64         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6668 TCGA-CS-6669 
       23.84        17.95        12.43        46.95        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        17.19        54.25        17.46        13.71 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
       10.36         7.96        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       18.77        14.93        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
       42.74         0.10        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 
       17.52         6.90        14.53        39.48        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
       27.35         0.10         5.33        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
       42.54        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CX TCGA-QH-A6CY 
       15.85        14.04        19.33        14.83        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A843 
       32.65        59.38        30.87         5.46         9.90         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
      169.84        10.39        99.06        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J 
       24.92        16.18        59.05        40.64        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       25.87        33.93        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CH TCGA-VV-A829 
       13.51         0.10         7.89        39.16        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A859 
       16.01        23.21         8.05        51.06        13.32        39.88 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
             0.23              0.03 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
           211.17            182.33 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
           26.300            16.585 
[1] "0.2 - 211.2 (26.3)" "0.0 - 182.3 (16.6)"
[1] "hr=" "8.9"
D103V2, continuous
D103V3, binary
                   cls
clus                  0   1
  SMARCA4 MUTATED     1  26
  SMARCA4 WILD-TYPE 277 486
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      1   26
  SMARCA4 WILD-TYPE  277  486
                        clus
vv                       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  BRAIN                                1               277
  CENTRAL NERVOUS SYSTEM              26               486
[1] 2 2
[1] FALSE
D103V4, binary
                   cls
clus                  0   1
  SMARCA4 MUTATED     9  18
  SMARCA4 WILD-TYPE 320 443
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      9   18
  SMARCA4 WILD-TYPE  320  443
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  FEMALE               9               320
  MALE                18               443
[1] 2 2
[1] FALSE
D103V5, binary
                   cls
clus                  0   1
  SMARCA4 MUTATED     9  16
  SMARCA4 WILD-TYPE 223 492
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      9   16
  SMARCA4 WILD-TYPE  223  492
     clus
vv    SMARCA4 MUTATED SMARCA4 WILD-TYPE
  NO                9               223
  YES              16               492
[1] 2 2
[1] FALSE
D103V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SMARCA4 MUTATED            11                             0                5
  SMARCA4 WILD-TYPE         181                             9              125
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SMARCA4 MUTATED                  10                   0
  SMARCA4 WILD-TYPE               180                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  SMARCA4 MUTATED                                 1
  SMARCA4 WILD-TYPE                             264
D103V7, multiclass
                                 clus
vv                                SMARCA4 MUTATED SMARCA4 WILD-TYPE
  ASTROCYTOMA                                  11               181
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              5               125
  OLIGODENDROGLIOMA                            10               180
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               1               264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SMARCA4 MUTATED                                  0     2
  SMARCA4 WILD-TYPE                                1    11
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  SMARCA4 MUTATED                           0    24
  SMARCA4 WILD-TYPE                        38   698
D103V8, multiclass
                                  clus
vv                                 SMARCA4 MUTATED SMARCA4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          2                11
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                         24               698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D103V9, binary
                   cls
clus                  0   1
  SMARCA4 MUTATED     2  19
  SMARCA4 WILD-TYPE  33 647
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      2   19
  SMARCA4 WILD-TYPE   33  647
                        clus
vv                       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  HISPANIC OR LATINO                   2                33
  NOT HISPANIC OR LATINO              19               647
[1] 2 2
[1] FALSE

Clustering(104) Variable = NAP1L2 MUTATION ANALYSIS
D104V1, survival
                  sevent
clus2                0   1
  NAP1L2 MUTATED     4   2
  NAP1L2 WILD-TYPE 449 332
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               6              781 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               2              332 
$`NAP1L2 MUTATED`
TCGA-06-0169 TCGA-06-2558 TCGA-DH-A7UR TCGA-FG-A710 TCGA-HT-8114 TCGA-WY-A85D 
        3.29        12.49        54.25        36.66        34.19        37.71 

$`NAP1L2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       11.41        19.66         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7US TCGA-DH-A7UT 
       42.05        27.81        17.19        17.19        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        28.54        10.78        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
       13.78         0.23        29.59        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85E 
       20.81 

  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
            3.29             0.03 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
           54.25           211.17 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
          35.425           16.800 
[1] "3.3 - 54.2 (35.4)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D104V2, continuous
D104V3, binary
                  cls
clus                 0   1
  NAP1L2 MUTATED     2   4
  NAP1L2 WILD-TYPE 276 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      2    4
  NAP1L2 WILD-TYPE  276  508
                        clus
vv                       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D104V4, binary
                  cls
clus                 0   1
  NAP1L2 MUTATED     3   3
  NAP1L2 WILD-TYPE 326 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      3    3
  NAP1L2 WILD-TYPE  326  458
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  FEMALE              3              326
  MALE                3              458
[1] 2 2
[1] FALSE
D104V5, binary
                  cls
clus                 0   1
  NAP1L2 MUTATED     2   4
  NAP1L2 WILD-TYPE 230 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      2    4
  NAP1L2 WILD-TYPE  230  504
     clus
vv    NAP1L2 MUTATED NAP1L2 WILD-TYPE
  NO               2              230
  YES              4              504
[1] 2 2
[1] FALSE
D104V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NAP1L2 MUTATED             0                             0                2
  NAP1L2 WILD-TYPE         192                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NAP1L2 MUTATED                   2                   0
  NAP1L2 WILD-TYPE               188                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  NAP1L2 MUTATED                                 2
  NAP1L2 WILD-TYPE                             263
D104V7, multiclass
                                 clus
vv                                NAP1L2 MUTATED NAP1L2 WILD-TYPE
  ASTROCYTOMA                                  0              192
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            2              188
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NAP1L2 MUTATED                                  0     0
  NAP1L2 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  NAP1L2 MUTATED                           0     6
  NAP1L2 WILD-TYPE                        38   716
D104V8, multiclass
                                  clus
vv                                 NAP1L2 MUTATED NAP1L2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         6              716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D104V9, binary
                  cls
clus                 0   1
  NAP1L2 MUTATED     0   5
  NAP1L2 WILD-TYPE  35 661
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      0    5
  NAP1L2 WILD-TYPE   35  661
                        clus
vv                       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              5              661
[1] 2 2
[1] FALSE

Clustering(105) Variable = CD44 MUTATION ANALYSIS
D105V1, survival
                sevent
clus2              0   1
  CD44 MUTATED     3   3
  CD44 WILD-TYPE 450 331
  CD44 MUTATED CD44 WILD-TYPE 
             6            781 
  CD44 MUTATED CD44 WILD-TYPE 
             3            331 
$`CD44 MUTATED`
TCGA-06-0137 TCGA-06-0155 TCGA-32-2494 TCGA-DB-5281 TCGA-DB-A64L TCGA-DU-6392 
       26.70        10.45        20.78        78.28        24.20       211.17 

$`CD44 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 
       22.72        33.67        12.95        25.35        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19        10.82        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       44.58        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XA 
       50.86        91.13        44.52        36.56        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       31.63        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  CD44 MUTATED CD44 WILD-TYPE 
         10.45           0.03 
  CD44 MUTATED CD44 WILD-TYPE 
        211.17         182.33 
  CD44 MUTATED CD44 WILD-TYPE 
         25.45          16.73 
[1] "10.4 - 211.2 (25.4)" "0.0 - 182.3 (16.7)" 
[1] "hr=" "1.8"
D105V2, continuous
D105V3, binary
                cls
clus               0   1
  CD44 MUTATED     3   3
  CD44 WILD-TYPE 275 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD44 MUTATED      3    3
  CD44 WILD-TYPE  275  509
                        clus
vv                       CD44 MUTATED CD44 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D105V4, binary
                cls
clus               0   1
  CD44 MUTATED     4   2
  CD44 WILD-TYPE 325 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD44 MUTATED      4    2
  CD44 WILD-TYPE  325  459
        clus
vv       CD44 MUTATED CD44 WILD-TYPE
  FEMALE            4            325
  MALE              2            459
[1] 2 2
[1] FALSE
D105V5, binary
                cls
clus               0   1
  CD44 MUTATED     1   5
  CD44 WILD-TYPE 231 503
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD44 MUTATED      1    5
  CD44 WILD-TYPE  231  503
     clus
vv    CD44 MUTATED CD44 WILD-TYPE
  NO             1            231
  YES            5            503
[1] 2 2
[1] FALSE
D105V6, continuous
[1] "Remove cluster labels:" "CD44 MUTATED"          
clus
  CD44 MUTATED CD44 WILD-TYPE 
             2            508 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0157     TCGA-06-0158     TCGA-06-0165 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0167     TCGA-06-0168     TCGA-06-0169     TCGA-06-0174 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0178     TCGA-06-0184     TCGA-06-0185     TCGA-06-0188 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0214     TCGA-06-0216 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0686     TCGA-06-0743 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0744     TCGA-06-0745     TCGA-06-0747     TCGA-06-0750 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0878     TCGA-06-0879 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1806 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6695     TCGA-06-6697     TCGA-06-6700 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-08-0386     TCGA-12-0615     TCGA-12-0616     TCGA-12-0618 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-14-0786     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0817     TCGA-14-0862     TCGA-14-0871 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-14-1456 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-19-1390     TCGA-19-1790 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2631 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5954     TCGA-19-5958     TCGA-19-5959 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5219     TCGA-28-5220     TCGA-32-1982 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-32-1986     TCGA-32-2615     TCGA-32-2638     TCGA-32-4213 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2573     TCGA-41-2575     TCGA-74-6573 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6285     TCGA-76-6286 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6661     TCGA-76-6662 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-76-6663     TCGA-76-6664     TCGA-81-5910     TCGA-CS-4938 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395     TCGA-CS-5396 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6290 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667     TCGA-CS-6668 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE     TCGA-DB-A64Q 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DB-A64R     TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DB-A64W     TCGA-DB-A64X     TCGA-DB-A75L     TCGA-DB-A75O 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DH-A66B     TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DH-A7UR     TCGA-DH-A7UU     TCGA-DH-A7UV     TCGA-DU-5851 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-5852     TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-5870     TCGA-DU-5871     TCGA-DU-5874     TCGA-DU-6396 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-6401     TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-7009 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-7011     TCGA-DU-7013     TCGA-DU-7015     TCGA-DU-7018 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-7019     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7299 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8165     TCGA-DU-8167 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR     TCGA-DU-A5TS 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2     TCGA-DU-A6S6 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R     TCGA-DU-A7T6 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB     TCGA-DU-A7TC 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302     TCGA-E1-5303 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322     TCGA-E1-A7YE 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ     TCGA-E1-A7YK 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YO 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4     TCGA-E1-A7Z6 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7636     TCGA-FG-7638 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT     TCGA-FG-A4MW 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6J1 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713     TCGA-FG-A87Q 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475     TCGA-HT-7477 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485     TCGA-HT-7607 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686     TCGA-HT-7689 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7854 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858     TCGA-HT-7875 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105     TCGA-HT-8113 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7     TCGA-HT-A5RA 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-A5RC     TCGA-HT-A615     TCGA-HT-A617     TCGA-HT-A618 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C     TCGA-HT-A74L 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1     TCGA-P5-A5EU 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5F0 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6     TCGA-P5-A731 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V     TCGA-QH-A65X 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU     TCGA-QH-A6CV 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY     TCGA-QH-A6CZ 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840     TCGA-RY-A845 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6TZ 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2     TCGA-S9-A6U5 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA     TCGA-S9-A6UB 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM     TCGA-S9-A6WN 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7J3 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY     TCGA-S9-A7QZ 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3     TCGA-S9-A7R4 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V     TCGA-S9-A89Z 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5     TCGA-TM-A7CA 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C     TCGA-TM-A84F 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I     TCGA-TM-A84J 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O     TCGA-TM-A84Q 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T     TCGA-TQ-A7RG 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN     TCGA-TQ-A7RO 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD     TCGA-VM-A8CE 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
    TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858     TCGA-WY-A859 
"CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" "CD44 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CD44 MUTATED             1                             0                1
  CD44 WILD-TYPE         191                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CD44 MUTATED                   1                   0
  CD44 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  CD44 MUTATED                                 3
  CD44 WILD-TYPE                             262
D105V7, multiclass
                                 clus
vv                                CD44 MUTATED CD44 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CD44 MUTATED                                  0     0
  CD44 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CD44 MUTATED                           0     6
  CD44 WILD-TYPE                        38   716
D105V8, multiclass
                                  clus
vv                                 CD44 MUTATED CD44 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D105V9, binary
                cls
clus               0   1
  CD44 MUTATED     0   6
  CD44 WILD-TYPE  35 660
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD44 MUTATED      0    6
  CD44 WILD-TYPE   35  660
                        clus
vv                       CD44 MUTATED CD44 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            6            660
[1] 2 2
[1] FALSE

Clustering(106) Variable = OR52M1 MUTATION ANALYSIS
D106V1, survival
                  sevent
clus2                0   1
  OR52M1 MUTATED     3   5
  OR52M1 WILD-TYPE 450 329
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               8              779 
  OR52M1 MUTATED OR52M1 WILD-TYPE 
               5              329 
$`OR52M1 MUTATED`
TCGA-12-0616 TCGA-19-5960 TCGA-32-1986 TCGA-32-2615 TCGA-DH-A66B TCGA-DU-6396 
       14.73        14.96        12.69        15.95        42.05        75.16 
TCGA-FG-7643 TCGA-QH-A6CV 
       20.09        14.53 

$`OR52M1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
        4.96        18.02        15.35        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1991 TCGA-32-2491 
        0.10        19.50         1.18         4.67        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.02         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F 
       63.88        46.06         8.02        30.21        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       52.11        22.42        49.02        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       40.08        22.55        20.61        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       14.04        19.33        14.83        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  OR52M1 MUTATED OR52M1 WILD-TYPE 
           12.69             0.03 
  OR52M1 MUTATED OR52M1 WILD-TYPE 
           75.16           211.17 
  OR52M1 MUTATED OR52M1 WILD-TYPE 
          15.455           16.830 
[1] "12.7 - 75.2 (15.5)" "0.0 - 211.2 (16.8)"
[1] "hr=" "1.4"
D106V2, continuous
D106V3, binary
                  cls
clus                 0   1
  OR52M1 MUTATED     4   4
  OR52M1 WILD-TYPE 274 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52M1 MUTATED      4    4
  OR52M1 WILD-TYPE  274  508
                        clus
vv                       OR52M1 MUTATED OR52M1 WILD-TYPE
  BRAIN                               4              274
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D106V4, binary
                  cls
clus                 0   1
  OR52M1 MUTATED     3   5
  OR52M1 WILD-TYPE 326 456
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52M1 MUTATED      3    5
  OR52M1 WILD-TYPE  326  456
        clus
vv       OR52M1 MUTATED OR52M1 WILD-TYPE
  FEMALE              3              326
  MALE                5              456
[1] 2 2
[1] FALSE
D106V5, binary
                  cls
clus                 0   1
  OR52M1 MUTATED     1   7
  OR52M1 WILD-TYPE 231 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52M1 MUTATED      1    7
  OR52M1 WILD-TYPE  231  501
     clus
vv    OR52M1 MUTATED OR52M1 WILD-TYPE
  NO               1              231
  YES              7              501
[1] 2 2
[1] FALSE
D106V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  OR52M1 MUTATED             1                             0                3
  OR52M1 WILD-TYPE         191                             9              127
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  OR52M1 MUTATED                   0                   0
  OR52M1 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  OR52M1 MUTATED                                 4
  OR52M1 WILD-TYPE                             261
D106V7, multiclass
                                 clus
vv                                OR52M1 MUTATED OR52M1 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             3              127
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              4              261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  OR52M1 MUTATED                                  0     1
  OR52M1 WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  OR52M1 MUTATED                           0     7
  OR52M1 WILD-TYPE                        38   715
D106V8, multiclass
                                  clus
vv                                 OR52M1 MUTATED OR52M1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         7              715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D106V9, binary
                  cls
clus                 0   1
  OR52M1 MUTATED     0   8
  OR52M1 WILD-TYPE  35 658
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52M1 MUTATED      0    8
  OR52M1 WILD-TYPE   35  658
                        clus
vv                       OR52M1 MUTATED OR52M1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              8              658
[1] 2 2
[1] FALSE

Clustering(107) Variable = ROBO3 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2               0   1
  ROBO3 MUTATED     5   0
  ROBO3 WILD-TYPE 448 334
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             782 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              0             334 
$`ROBO3 MUTATED`
TCGA-CS-6667 TCGA-DB-A64L TCGA-HT-7676 TCGA-P5-A5F2 TCGA-TQ-A7RN 
        7.56        24.20         0.16         7.63        33.73 

$`ROBO3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P 
       37.45        33.57        72.95        31.63        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        5.88         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       40.41        44.09        36.69        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  ROBO3 MUTATED ROBO3 WILD-TYPE 
           0.16            0.03 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
          33.73          211.17 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
           7.63           16.83 
[1] "0.2 - 33.7 (7.6)"   "0.0 - 211.2 (16.8)"
[1] "hr="     "3300000"
D107V2, continuous
D107V3, binary
                 cls
clus                0   1
  ROBO3 MUTATED     0   5
  ROBO3 WILD-TYPE 278 507
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO3 MUTATED      0    5
  ROBO3 WILD-TYPE  278  507
                        clus
vv                       ROBO3 MUTATED ROBO3 WILD-TYPE
  BRAIN                              0             278
  CENTRAL NERVOUS SYSTEM             5             507
[1] 2 2
[1] FALSE
D107V4, binary
                 cls
clus                0   1
  ROBO3 MUTATED     3   2
  ROBO3 WILD-TYPE 326 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO3 MUTATED      3    2
  ROBO3 WILD-TYPE  326  459
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  FEMALE             3             326
  MALE               2             459
[1] 2 2
[1] FALSE
D107V5, binary
                 cls
clus                0   1
  ROBO3 MUTATED     2   2
  ROBO3 WILD-TYPE 230 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO3 MUTATED      2    2
  ROBO3 WILD-TYPE  230  506
     clus
vv    ROBO3 MUTATED ROBO3 WILD-TYPE
  NO              2             230
  YES             2             506
[1] 2 2
[1] FALSE
D107V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ROBO3 MUTATED             2                             0                0
  ROBO3 WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ROBO3 MUTATED                   3                   0
  ROBO3 WILD-TYPE               187                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  ROBO3 MUTATED                                 0
  ROBO3 WILD-TYPE                             265
D107V7, multiclass
                                 clus
vv                                ROBO3 MUTATED ROBO3 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           3             187
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             0             265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ROBO3 MUTATED                                  0     0
  ROBO3 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ROBO3 MUTATED                           0     5
  ROBO3 WILD-TYPE                        38   717
D107V8, multiclass
                                  clus
vv                                 ROBO3 MUTATED ROBO3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        5             717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D107V9, binary
                 cls
clus                0   1
  ROBO3 MUTATED     1   4
  ROBO3 WILD-TYPE  34 662
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO3 MUTATED      1    4
  ROBO3 WILD-TYPE   34  662
                        clus
vv                       ROBO3 MUTATED ROBO3 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             4             662
[1] 2 2
[1] FALSE

Clustering(108) Variable = MYO5A MUTATION ANALYSIS
D108V1, survival
                 sevent
clus2               0   1
  MYO5A MUTATED     3   2
  MYO5A WILD-TYPE 450 332
  MYO5A MUTATED MYO5A WILD-TYPE 
              5             782 
  MYO5A MUTATED MYO5A WILD-TYPE 
              2             332 
$`MYO5A MUTATED`
TCGA-74-6573 TCGA-CS-6186 TCGA-DU-5847 TCGA-DU-6392 TCGA-FG-5964 
        3.45        17.69        18.02       211.17        52.21 

$`MYO5A WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       15.12        12.46        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       17.46        13.71        18.61        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5965 
       39.48         0.23         0.20        47.77        25.48        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  MYO5A MUTATED MYO5A WILD-TYPE 
           3.45            0.03 
  MYO5A MUTATED MYO5A WILD-TYPE 
         211.17          182.33 
  MYO5A MUTATED MYO5A WILD-TYPE 
         18.020          16.765 
[1] "3.5 - 211.2 (18.0)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.2"
D108V2, continuous
D108V3, binary
                 cls
clus                0   1
  MYO5A MUTATED     1   4
  MYO5A WILD-TYPE 277 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO5A MUTATED      1    4
  MYO5A WILD-TYPE  277  508
                        clus
vv                       MYO5A MUTATED MYO5A WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D108V4, binary
                 cls
clus                0   1
  MYO5A MUTATED     2   3
  MYO5A WILD-TYPE 327 458
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO5A MUTATED      2    3
  MYO5A WILD-TYPE  327  458
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  FEMALE             2             327
  MALE               3             458
[1] 2 2
[1] FALSE
D108V5, binary
                 cls
clus                0   1
  MYO5A MUTATED     0   5
  MYO5A WILD-TYPE 232 503
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO5A MUTATED      0    5
  MYO5A WILD-TYPE  232  503
     clus
vv    MYO5A MUTATED MYO5A WILD-TYPE
  NO              0             232
  YES             5             503
[1] 2 2
[1] FALSE
D108V6, continuous
[1] "Remove cluster labels:" "MYO5A MUTATED"         
clus
  MYO5A MUTATED MYO5A WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5139      TCGA-26-6173 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-2502      TCGA-28-2509 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5219      TCGA-28-5220 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-2615      TCGA-32-2638 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-32-4213      TCGA-41-2571      TCGA-41-2573      TCGA-41-2575 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6285      TCGA-76-6286 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6661      TCGA-76-6662 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-76-6663      TCGA-76-6664      TCGA-81-5910      TCGA-CS-4938 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395      TCGA-CS-5396 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6188      TCGA-CS-6290      TCGA-CS-6665 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6667      TCGA-CS-6668      TCGA-CS-6669 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L      TCGA-DB-A64Q 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U      TCGA-DB-A64V 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L      TCGA-DB-A75O 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F      TCGA-DH-A66G 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV      TCGA-DU-5851 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874      TCGA-DU-6396 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-7009 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7299 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165      TCGA-DU-8167 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2      TCGA-DU-A6S6 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R      TCGA-DU-A7T6 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB      TCGA-DU-A7TC 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302      TCGA-E1-5303 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-E1-A7YE 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ      TCGA-E1-A7YK 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN      TCGA-E1-A7YO 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV      TCGA-E1-A7YW 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4      TCGA-E1-A7Z6 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636      TCGA-FG-7638 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT      TCGA-FG-A4MW 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L      TCGA-FG-A6J1 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713      TCGA-FG-A87Q 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475      TCGA-HT-7477 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485      TCGA-HT-7607 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686      TCGA-HT-7689 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7854 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858      TCGA-HT-7875 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105      TCGA-HT-8113 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7      TCGA-HT-A5RA 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617      TCGA-HT-A618 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C      TCGA-HT-A74L 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1      TCGA-P5-A5EU 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5F0 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6      TCGA-P5-A731 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V      TCGA-QH-A65X 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU      TCGA-QH-A6CV 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY      TCGA-QH-A6CZ 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5      TCGA-QH-A6X8 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC      TCGA-QH-A86X 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840      TCGA-RY-A845 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU      TCGA-S9-A6TV 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY      TCGA-S9-A6TZ 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2      TCGA-S9-A6U5 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA      TCGA-S9-A6UB 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG      TCGA-S9-A6WH 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM      TCGA-S9-A6WN 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ      TCGA-S9-A7IQ 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY      TCGA-S9-A7IZ 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7J3 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY      TCGA-S9-A7QZ 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3      TCGA-S9-A7R4 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V      TCGA-S9-A89Z 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5      TCGA-TM-A7CA 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C      TCGA-TM-A84F 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" "MYO5A WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MYO5A MUTATED             2                             0                1
  MYO5A WILD-TYPE         190                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MYO5A MUTATED                   1                   0
  MYO5A WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  MYO5A MUTATED                                 1
  MYO5A WILD-TYPE                             264
D108V7, multiclass
                                 clus
vv                                MYO5A MUTATED MYO5A WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYO5A MUTATED                                  0     0
  MYO5A WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MYO5A MUTATED                           0     4
  MYO5A WILD-TYPE                        38   718
D108V8, multiclass
                                  clus
vv                                 MYO5A MUTATED MYO5A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        4             718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D108V9, binary
                 cls
clus                0   1
  MYO5A MUTATED     0   4
  MYO5A WILD-TYPE  35 662
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO5A MUTATED      0    4
  MYO5A WILD-TYPE   35  662
                        clus
vv                       MYO5A MUTATED MYO5A WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             4             662
[1] 2 2
[1] FALSE

Clustering(109) Variable = KRT3 MUTATION ANALYSIS
D109V1, survival
                sevent
clus2              0   1
  KRT3 MUTATED     2   2
  KRT3 WILD-TYPE 451 332
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            783 
  KRT3 MUTATED KRT3 WILD-TYPE 
             2            332 
$`KRT3 MUTATED`
TCGA-DU-5854 TCGA-DU-6397 TCGA-IK-7675 TCGA-S9-A6WO 
        8.45        46.06        19.00        18.61 

$`KRT3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5870 
       14.56        17.46         6.74        13.38         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       12.76        20.81        20.71        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       19.86        26.47        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  KRT3 MUTATED KRT3 WILD-TYPE 
          8.45           0.03 
  KRT3 MUTATED KRT3 WILD-TYPE 
         46.06         211.17 
  KRT3 MUTATED KRT3 WILD-TYPE 
        18.805         16.800 
[1] "8.4 - 46.1 (18.8)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.2"
D109V2, continuous
D109V3, binary
                cls
clus               0   1
  KRT3 MUTATED     0   4
  KRT3 WILD-TYPE 278 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRT3 MUTATED      0    4
  KRT3 WILD-TYPE  278  508
                        clus
vv                       KRT3 MUTATED KRT3 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D109V4, binary
                cls
clus               0   1
  KRT3 MUTATED     1   3
  KRT3 WILD-TYPE 328 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRT3 MUTATED      1    3
  KRT3 WILD-TYPE  328  458
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  FEMALE            1            328
  MALE              3            458
[1] 2 2
[1] FALSE
D109V5, binary
                cls
clus               0   1
  KRT3 MUTATED     1   3
  KRT3 WILD-TYPE 231 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRT3 MUTATED      1    3
  KRT3 WILD-TYPE  231  505
     clus
vv    KRT3 MUTATED KRT3 WILD-TYPE
  NO             1            231
  YES            3            505
[1] 2 2
[1] FALSE
D109V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KRT3 MUTATED             2                             0                0
  KRT3 WILD-TYPE         190                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KRT3 MUTATED                   2                   0
  KRT3 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  KRT3 MUTATED                                 0
  KRT3 WILD-TYPE                             265
D109V7, multiclass
                                 clus
vv                                KRT3 MUTATED KRT3 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KRT3 MUTATED                                  0     0
  KRT3 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  KRT3 MUTATED                           0     4
  KRT3 WILD-TYPE                        38   718
D109V8, multiclass
                                  clus
vv                                 KRT3 MUTATED KRT3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       4            718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D109V9, binary
                cls
clus               0   1
  KRT3 MUTATED     1   3
  KRT3 WILD-TYPE  34 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRT3 MUTATED      1    3
  KRT3 WILD-TYPE   34  663
                        clus
vv                       KRT3 MUTATED KRT3 WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(110) Variable = GEFT MUTATION ANALYSIS
D110V1, survival
                sevent
clus2              0   1
  GEFT MUTATED     2   2
  GEFT WILD-TYPE 451 332
  GEFT MUTATED GEFT WILD-TYPE 
             4            783 
  GEFT MUTATED GEFT WILD-TYPE 
             2            332 
$`GEFT MUTATED`
TCGA-02-2485 TCGA-DU-6392 TCGA-E1-A7YD TCGA-HT-A5RC 
       15.45       211.17        14.30         5.33 

$`GEFT WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07        27.35         0.10         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  GEFT MUTATED GEFT WILD-TYPE 
          5.33           0.03 
  GEFT MUTATED GEFT WILD-TYPE 
        211.17         182.33 
  GEFT MUTATED GEFT WILD-TYPE 
        14.875         16.830 
[1] "5.3 - 211.2 (14.9)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.7"
D110V2, continuous
D110V3, binary
                cls
clus               0   1
  GEFT MUTATED     1   3
  GEFT WILD-TYPE 277 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  GEFT MUTATED      1    3
  GEFT WILD-TYPE  277  509
                        clus
vv                       GEFT MUTATED GEFT WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D110V4, binary
                cls
clus               0   1
  GEFT MUTATED     2   2
  GEFT WILD-TYPE 327 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  GEFT MUTATED      2    2
  GEFT WILD-TYPE  327  459
        clus
vv       GEFT MUTATED GEFT WILD-TYPE
  FEMALE            2            327
  MALE              2            459
[1] 2 2
[1] FALSE
D110V5, binary
                cls
clus               0   1
  GEFT MUTATED     0   4
  GEFT WILD-TYPE 232 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  GEFT MUTATED      0    4
  GEFT WILD-TYPE  232  504
     clus
vv    GEFT MUTATED GEFT WILD-TYPE
  NO             0            232
  YES            4            504
[1] 2 2
[1] FALSE
D110V6, continuous
[1] "Remove cluster labels:" "GEFT MUTATED"          
clus
  GEFT MUTATED GEFT WILD-TYPE 
             2            508 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2486     TCGA-06-0126 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0139 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0140     TCGA-06-0141     TCGA-06-0151     TCGA-06-0154 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0155     TCGA-06-0157     TCGA-06-0158     TCGA-06-0165 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0167     TCGA-06-0168     TCGA-06-0169     TCGA-06-0174 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0178     TCGA-06-0184     TCGA-06-0185     TCGA-06-0188 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0214     TCGA-06-0216 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0686     TCGA-06-0743 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0744     TCGA-06-0745     TCGA-06-0747     TCGA-06-0750 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0878     TCGA-06-0879 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1806 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6695     TCGA-06-6697     TCGA-06-6700 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-08-0386     TCGA-12-0615     TCGA-12-0616     TCGA-12-0618 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-14-0786     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0817     TCGA-14-0862     TCGA-14-0871 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-14-1456 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-19-1390     TCGA-19-1790 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2631 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5954     TCGA-19-5958     TCGA-19-5959 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-27-2528     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5219     TCGA-28-5220     TCGA-32-1982 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-32-1986     TCGA-32-2615     TCGA-32-2638     TCGA-32-4213 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2573     TCGA-41-2575     TCGA-74-6573 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6285     TCGA-76-6286 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6661     TCGA-76-6662 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-76-6663     TCGA-76-6664     TCGA-81-5910     TCGA-CS-4938 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395     TCGA-CS-5396 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6290 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667     TCGA-CS-6668 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE     TCGA-DB-A64L 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S     TCGA-DB-A64U 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X     TCGA-DB-A75L 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D     TCGA-DH-A66F 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU     TCGA-DH-A7UV 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853     TCGA-DU-5854 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871     TCGA-DU-5874 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403     TCGA-DU-6404 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013     TCGA-DU-7015 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294     TCGA-DU-7298 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8165 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-A7YE     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-A7YK     TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-A7YO     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7636 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-FG-7638     TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-FG-A6J1     TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-7607     TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-8113     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-A5RA     TCGA-HT-A615     TCGA-HT-A617     TCGA-HT-A618 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C     TCGA-HT-A74L 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1     TCGA-P5-A5EU 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5F0 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6     TCGA-P5-A731 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V     TCGA-QH-A65X 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU     TCGA-QH-A6CV 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY     TCGA-QH-A6CZ 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840     TCGA-RY-A845 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6TZ 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2     TCGA-S9-A6U5 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA     TCGA-S9-A6UB 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM     TCGA-S9-A6WN 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7J3 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY     TCGA-S9-A7QZ 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3     TCGA-S9-A7R4 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V     TCGA-S9-A89Z 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5     TCGA-TM-A7CA 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C     TCGA-TM-A84F 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I     TCGA-TM-A84J 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O     TCGA-TM-A84Q 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T     TCGA-TQ-A7RG 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN     TCGA-TQ-A7RO 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD     TCGA-VM-A8CE 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
    TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858     TCGA-WY-A859 
"GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" "GEFT WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GEFT MUTATED             3                             0                0
  GEFT WILD-TYPE         189                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GEFT MUTATED                   0                   0
  GEFT WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  GEFT MUTATED                                 1
  GEFT WILD-TYPE                             264
D110V7, multiclass
                                 clus
vv                                GEFT MUTATED GEFT WILD-TYPE
  ASTROCYTOMA                                3            189
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GEFT MUTATED                                  0     0
  GEFT WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  GEFT MUTATED                           1     3
  GEFT WILD-TYPE                        37   719
D110V8, multiclass
                                  clus
vv                                 GEFT MUTATED GEFT WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   1             37
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D110V9, binary
                cls
clus               0   1
  GEFT MUTATED     0   4
  GEFT WILD-TYPE  35 662
[1] "tbl2"
                cls
clus             [,1] [,2]
  GEFT MUTATED      0    4
  GEFT WILD-TYPE   35  662
                        clus
vv                       GEFT MUTATED GEFT WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            4            662
[1] 2 2
[1] FALSE

Clustering(111) Variable = POM121 MUTATION ANALYSIS
D111V1, survival
                  sevent
clus2                0   1
  POM121 MUTATED     3   3
  POM121 WILD-TYPE 450 331
  POM121 MUTATED POM121 WILD-TYPE 
               6              781 
  POM121 MUTATED POM121 WILD-TYPE 
               3              331 
$`POM121 MUTATED`
TCGA-06-0141 TCGA-32-4211 TCGA-DU-6392 TCGA-HT-7880 TCGA-S9-A7QX TCGA-TM-A84C 
       10.29        12.59       211.17         5.33        18.54        16.18 

$`POM121 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        0.20         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4213 
       22.78        25.18        21.14        20.32         3.72        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        3.68        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       20.68        15.06        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  POM121 MUTATED POM121 WILD-TYPE 
            5.33             0.03 
  POM121 MUTATED POM121 WILD-TYPE 
          211.17           182.33 
  POM121 MUTATED POM121 WILD-TYPE 
          14.385           16.830 
[1] "5.3 - 211.2 (14.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.3"
D111V2, continuous
D111V3, binary
                  cls
clus                 0   1
  POM121 MUTATED     2   4
  POM121 WILD-TYPE 276 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POM121 MUTATED      2    4
  POM121 WILD-TYPE  276  508
                        clus
vv                       POM121 MUTATED POM121 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D111V4, binary
                  cls
clus                 0   1
  POM121 MUTATED     2   4
  POM121 WILD-TYPE 327 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POM121 MUTATED      2    4
  POM121 WILD-TYPE  327  457
        clus
vv       POM121 MUTATED POM121 WILD-TYPE
  FEMALE              2              327
  MALE                4              457
[1] 2 2
[1] FALSE
D111V5, binary
                  cls
clus                 0   1
  POM121 MUTATED     2   4
  POM121 WILD-TYPE 230 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POM121 MUTATED      2    4
  POM121 WILD-TYPE  230  504
     clus
vv    POM121 MUTATED POM121 WILD-TYPE
  NO               2              230
  YES              4              504
[1] 2 2
[1] FALSE
D111V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  POM121 MUTATED             3                             0                1
  POM121 WILD-TYPE         189                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  POM121 MUTATED                   0                   0
  POM121 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  POM121 MUTATED                                 2
  POM121 WILD-TYPE                             263
D111V7, multiclass
                                 clus
vv                                POM121 MUTATED POM121 WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  POM121 MUTATED                                  0     0
  POM121 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  POM121 MUTATED                           0     6
  POM121 WILD-TYPE                        38   716
D111V8, multiclass
                                  clus
vv                                 POM121 MUTATED POM121 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         6              716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D111V9, binary
                  cls
clus                 0   1
  POM121 MUTATED     0   6
  POM121 WILD-TYPE  35 660
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POM121 MUTATED      0    6
  POM121 WILD-TYPE   35  660
                        clus
vv                       POM121 MUTATED POM121 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              6              660
[1] 2 2
[1] FALSE

Clustering(112) Variable = CMA1 MUTATION ANALYSIS
D112V1, survival
                sevent
clus2              0   1
  CMA1 MUTATED     2   1
  CMA1 WILD-TYPE 451 333
  CMA1 MUTATED CMA1 WILD-TYPE 
             3            784 
  CMA1 MUTATED CMA1 WILD-TYPE 
             1            333 
$`CMA1 MUTATED`
TCGA-06-6700 TCGA-DU-6392 TCGA-E1-5304 
        4.77       211.17        41.13 

$`CMA1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 
        7.36         8.32        12.85         4.77         1.55         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  CMA1 MUTATED CMA1 WILD-TYPE 
          4.77           0.03 
  CMA1 MUTATED CMA1 WILD-TYPE 
        211.17         182.33 
  CMA1 MUTATED CMA1 WILD-TYPE 
        41.130         16.815 
[1] "4.8 - 211.2 (41.1)" "0.0 - 182.3 (16.8)"
[1] "hr=" "3.5"
D112V2, continuous
D112V3, binary
                cls
clus               0   1
  CMA1 MUTATED     1   2
  CMA1 WILD-TYPE 277 510
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      1    2
  CMA1 WILD-TYPE  277  510
                        clus
vv                       CMA1 MUTATED CMA1 WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            2            510
[1] 2 2
[1] FALSE
D112V4, binary
                cls
clus               0   1
  CMA1 MUTATED     1   2
  CMA1 WILD-TYPE 328 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      1    2
  CMA1 WILD-TYPE  328  459
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  FEMALE            1            328
  MALE              2            459
[1] 2 2
[1] FALSE
D112V5, binary
                cls
clus               0   1
  CMA1 MUTATED     0   3
  CMA1 WILD-TYPE 232 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      0    3
  CMA1 WILD-TYPE  232  505
     clus
vv    CMA1 MUTATED CMA1 WILD-TYPE
  NO             0            232
  YES            3            505
[1] 2 2
[1] FALSE
D112V6, continuous
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            508 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0167     TCGA-06-0168     TCGA-06-0169 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0185 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0188     TCGA-06-0192     TCGA-06-0195     TCGA-06-0214 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0238     TCGA-06-0240     TCGA-06-0241 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0646     TCGA-06-0648     TCGA-06-0686 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0878 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-5408     TCGA-06-5410     TCGA-06-5411     TCGA-06-5412 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-5413     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-5418     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6695     TCGA-06-6697 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-08-0386     TCGA-12-0615     TCGA-12-0616     TCGA-12-0618 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-14-0786     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0817     TCGA-14-0862     TCGA-14-0871 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-14-1456 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-19-1390     TCGA-19-1790 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2631 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5954     TCGA-19-5958     TCGA-19-5959 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5219     TCGA-28-5220     TCGA-32-1982 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-32-1986     TCGA-32-2615     TCGA-32-2638     TCGA-32-4213 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2573     TCGA-41-2575     TCGA-74-6573 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6285     TCGA-76-6286 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6661     TCGA-76-6662 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-76-6663     TCGA-76-6664     TCGA-81-5910     TCGA-CS-4938 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395     TCGA-CS-5396 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6290 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667     TCGA-CS-6668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE     TCGA-DB-A64L 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S     TCGA-DB-A64U 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X     TCGA-DB-A75L 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D     TCGA-DH-A66F 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU     TCGA-DH-A7UV 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853     TCGA-DU-5854 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871     TCGA-DU-5874 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403     TCGA-DU-6404 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013     TCGA-DU-7015 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294     TCGA-DU-7298 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8165 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-E1-5303     TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322     TCGA-E1-A7YE 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ     TCGA-E1-A7YK 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN     TCGA-E1-A7YO 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV     TCGA-E1-A7YW 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4     TCGA-E1-A7Z6 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7636     TCGA-FG-7638 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT     TCGA-FG-A4MW 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6J1 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713     TCGA-FG-A87Q 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475     TCGA-HT-7477 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485     TCGA-HT-7607 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686     TCGA-HT-7689 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7854 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858     TCGA-HT-7875 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105     TCGA-HT-8113 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7     TCGA-HT-A5RA 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-A5RC     TCGA-HT-A615     TCGA-HT-A617     TCGA-HT-A618 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C     TCGA-HT-A74L 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1     TCGA-P5-A5EU 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5F0 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6     TCGA-P5-A731 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V     TCGA-QH-A65X 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU     TCGA-QH-A6CV 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY     TCGA-QH-A6CZ 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840     TCGA-RY-A845 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6TZ 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2     TCGA-S9-A6U5 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA     TCGA-S9-A6UB 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM     TCGA-S9-A6WN 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7J3 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY     TCGA-S9-A7QZ 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3     TCGA-S9-A7R4 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V     TCGA-S9-A89Z 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5     TCGA-TM-A7CA 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C     TCGA-TM-A84F 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I     TCGA-TM-A84J 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O     TCGA-TM-A84Q 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T     TCGA-TQ-A7RG 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN     TCGA-TQ-A7RO 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD     TCGA-VM-A8CE 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858     TCGA-WY-A859 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CMA1 MUTATED             2                             0                0
  CMA1 WILD-TYPE         190                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CMA1 MUTATED                   0                   0
  CMA1 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  CMA1 MUTATED                                 1
  CMA1 WILD-TYPE                             264
D112V7, multiclass
                                 clus
vv                                CMA1 MUTATED CMA1 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CMA1 MUTATED                                  0     0
  CMA1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CMA1 MUTATED                           0     3
  CMA1 WILD-TYPE                        38   719
D112V8, multiclass
                                  clus
vv                                 CMA1 MUTATED CMA1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D112V9, binary
                cls
clus               0   1
  CMA1 MUTATED     0   3
  CMA1 WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      0    3
  CMA1 WILD-TYPE   35  663
                        clus
vv                       CMA1 MUTATED CMA1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(113) Variable = QKI MUTATION ANALYSIS
D113V1, survival
               sevent
clus2             0   1
  QKI MUTATED     0   6
  QKI WILD-TYPE 453 328
  QKI MUTATED QKI WILD-TYPE 
            6           781 
  QKI MUTATED QKI WILD-TYPE 
            6           328 
$`QKI MUTATED`
TCGA-06-0155 TCGA-06-0237 TCGA-06-0650 TCGA-28-5207 TCGA-28-5208 TCGA-FG-5965 
       10.45        13.64        23.57        11.28        17.88        36.82 

$`QKI WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       13.94         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 
        0.53        15.02        24.16         0.72        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5209 TCGA-28-5211 
        4.77         7.30         5.26        14.93         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6688 
        0.23         0.20        47.77        25.48        52.21        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  QKI MUTATED QKI WILD-TYPE 
        10.45          0.03 
  QKI MUTATED QKI WILD-TYPE 
        36.82        211.17 
  QKI MUTATED QKI WILD-TYPE 
        15.76         16.83 
[1] "10.4 - 36.8 (15.8)" "0.0 - 211.2 (16.8)"
[1] "hr=" "2.9"
D113V2, continuous
D113V3, binary
               cls
clus              0   1
  QKI MUTATED     5   1
  QKI WILD-TYPE 273 511
[1] "tbl2"
               cls
clus            [,1] [,2]
  QKI MUTATED      5    1
  QKI WILD-TYPE  273  511
                        clus
vv                       QKI MUTATED QKI WILD-TYPE
  BRAIN                            5           273
  CENTRAL NERVOUS SYSTEM           1           511
[1] 2 2
[1] FALSE
D113V4, binary
               cls
clus              0   1
  QKI MUTATED     3   3
  QKI WILD-TYPE 326 458
[1] "tbl2"
               cls
clus            [,1] [,2]
  QKI MUTATED      3    3
  QKI WILD-TYPE  326  458
        clus
vv       QKI MUTATED QKI WILD-TYPE
  FEMALE           3           326
  MALE             3           458
[1] 2 2
[1] FALSE
D113V5, binary
               cls
clus              0   1
  QKI MUTATED     1   5
  QKI WILD-TYPE 231 503
[1] "tbl2"
               cls
clus            [,1] [,2]
  QKI MUTATED      1    5
  QKI WILD-TYPE  231  503
     clus
vv    QKI MUTATED QKI WILD-TYPE
  NO            1           231
  YES           5           503
[1] 2 2
[1] FALSE
D113V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  QKI MUTATED             0                             0                1
  QKI WILD-TYPE         192                             9              129
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  QKI MUTATED                   0                   0
  QKI WILD-TYPE               190                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  QKI MUTATED                                 5
  QKI WILD-TYPE                             260
D113V7, multiclass
                                 clus
vv                                QKI MUTATED QKI WILD-TYPE
  ASTROCYTOMA                               0           192
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          1           129
  OLIGODENDROGLIOMA                         0           190
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           5           260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  QKI MUTATED                                  0     0
  QKI WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  QKI MUTATED                           0     6
  QKI WILD-TYPE                        38   716
D113V8, multiclass
                                  clus
vv                                 QKI MUTATED QKI WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  0            38
  WHITE                                      6           716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D113V9, binary
               cls
clus              0   1
  QKI MUTATED     0   4
  QKI WILD-TYPE  35 662
[1] "tbl2"
               cls
clus            [,1] [,2]
  QKI MUTATED      0    4
  QKI WILD-TYPE   35  662
                        clus
vv                       QKI MUTATED QKI WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO           4           662
[1] 2 2
[1] FALSE

Clustering(114) Variable = TMPRSS6 MUTATION ANALYSIS
D114V1, survival
                   sevent
clus2                 0   1
  TMPRSS6 MUTATED     5   4
  TMPRSS6 WILD-TYPE 448 330
  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
                9               778 
  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
                4               330 
$`TMPRSS6 MUTATED`
TCGA-06-0878 TCGA-06-5415 TCGA-19-2629 TCGA-26-5139 TCGA-27-1832 TCGA-76-4928 
        7.17         8.55        24.23         1.58         9.86         3.09 
TCGA-DU-6392 TCGA-DU-7006 TCGA-HT-7855 
      211.17        11.47        19.23 

$`TMPRSS6 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        5.65        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        9.67         4.87         7.53         0.16         4.08         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 
        7.92         2.33         5.06        16.60        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 
       14.33         7.50         4.80         4.54        17.59         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
      114.08         7.96         2.40        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7856 TCGA-HT-7857 
       17.52         6.90        14.53        39.48        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
             1.58              0.03 
  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
           211.17            182.33 
  TMPRSS6 MUTATED TMPRSS6 WILD-TYPE 
             9.86             16.88 
[1] "1.6 - 211.2 (9.9)"  "0.0 - 182.3 (16.9)"
[1] "hr=" "1.1"
D114V2, continuous
D114V3, binary
                   cls
clus                  0   1
  TMPRSS6 MUTATED     6   3
  TMPRSS6 WILD-TYPE 272 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMPRSS6 MUTATED      6    3
  TMPRSS6 WILD-TYPE  272  509
                        clus
vv                       TMPRSS6 MUTATED TMPRSS6 WILD-TYPE
  BRAIN                                6               272
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D114V4, binary
                   cls
clus                  0   1
  TMPRSS6 MUTATED     5   4
  TMPRSS6 WILD-TYPE 324 457
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMPRSS6 MUTATED      5    4
  TMPRSS6 WILD-TYPE  324  457
        clus
vv       TMPRSS6 MUTATED TMPRSS6 WILD-TYPE
  FEMALE               5               324
  MALE                 4               457
[1] 2 2
[1] FALSE
D114V5, binary
                   cls
clus                  0   1
  TMPRSS6 MUTATED     1   8
  TMPRSS6 WILD-TYPE 231 500
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMPRSS6 MUTATED      1    8
  TMPRSS6 WILD-TYPE  231  500
     clus
vv    TMPRSS6 MUTATED TMPRSS6 WILD-TYPE
  NO                1               231
  YES               8               500
[1] 2 2
[1] FALSE
D114V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TMPRSS6 MUTATED             3                             0                0
  TMPRSS6 WILD-TYPE         189                             9              130
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TMPRSS6 MUTATED                   0                   0
  TMPRSS6 WILD-TYPE               190                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  TMPRSS6 MUTATED                                 6
  TMPRSS6 WILD-TYPE                             259
D114V7, multiclass
                                 clus
vv                                TMPRSS6 MUTATED TMPRSS6 WILD-TYPE
  ASTROCYTOMA                                   3               189
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              0               130
  OLIGODENDROGLIOMA                             0               190
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               6               259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TMPRSS6 MUTATED                                  0     0
  TMPRSS6 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  TMPRSS6 MUTATED                           0     9
  TMPRSS6 WILD-TYPE                        38   713
D114V8, multiclass
                                  clus
vv                                 TMPRSS6 MUTATED TMPRSS6 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          9               713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D114V9, binary
                   cls
clus                  0   1
  TMPRSS6 MUTATED     0   8
  TMPRSS6 WILD-TYPE  35 658
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMPRSS6 MUTATED      0    8
  TMPRSS6 WILD-TYPE   35  658
                        clus
vv                       TMPRSS6 MUTATED TMPRSS6 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               8               658
[1] 2 2
[1] FALSE

Clustering(115) Variable = PLXNA3 MUTATION ANALYSIS
D115V1, survival
                  sevent
clus2                0   1
  PLXNA3 MUTATED     9   1
  PLXNA3 WILD-TYPE 444 333
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
              10              777 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1              333 
$`PLXNA3 MUTATED`
TCGA-06-5412 TCGA-CS-5396 TCGA-DU-5872 TCGA-DU-6392 TCGA-FG-6688 TCGA-FG-8185 
        4.54         9.96        17.49       211.17        18.77        14.24 
TCGA-FG-A4MU TCGA-HT-A615 TCGA-P5-A737 TCGA-QH-A6CU 
       10.72        16.93        12.23        14.83 

$`PLXNA3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 
       31.50        11.74         3.55         8.35         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 
       64.64        40.18         0.10        21.01         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       36.82        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       13.68        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       38.27        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
        2.70         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        9.60         7.56        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
            4.54             0.03 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
          211.17           182.33 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
          14.535           16.830 
[1] "4.5 - 211.2 (14.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "5.1"
D115V2, continuous
D115V3, binary
                  cls
clus                 0   1
  PLXNA3 MUTATED     1   9
  PLXNA3 WILD-TYPE 277 503
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PLXNA3 MUTATED      1    9
  PLXNA3 WILD-TYPE  277  503
                        clus
vv                       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM              9              503
[1] 2 2
[1] FALSE
D115V4, binary
                  cls
clus                 0   1
  PLXNA3 MUTATED     7   3
  PLXNA3 WILD-TYPE 322 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PLXNA3 MUTATED      7    3
  PLXNA3 WILD-TYPE  322  458
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  FEMALE              7              322
  MALE                3              458
[1] 2 2
[1] FALSE
D115V5, binary
                  cls
clus                 0   1
  PLXNA3 MUTATED     1   8
  PLXNA3 WILD-TYPE 231 500
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PLXNA3 MUTATED      1    8
  PLXNA3 WILD-TYPE  231  500
     clus
vv    PLXNA3 MUTATED PLXNA3 WILD-TYPE
  NO               1              231
  YES              8              500
[1] 2 2
[1] FALSE
D115V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PLXNA3 MUTATED             3                             0                3
  PLXNA3 WILD-TYPE         189                             9              127
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PLXNA3 MUTATED                   3                   0
  PLXNA3 WILD-TYPE               187                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PLXNA3 MUTATED                                 1
  PLXNA3 WILD-TYPE                             264
D115V7, multiclass
                                 clus
vv                                PLXNA3 MUTATED PLXNA3 WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             3              127
  OLIGODENDROGLIOMA                            3              187
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PLXNA3 MUTATED                                  0     0
  PLXNA3 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PLXNA3 MUTATED                           2     8
  PLXNA3 WILD-TYPE                        36   714
D115V8, multiclass
                                  clus
vv                                 PLXNA3 MUTATED PLXNA3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     2               36
  WHITE                                         8              714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D115V9, binary
                  cls
clus                 0   1
  PLXNA3 MUTATED     0  10
  PLXNA3 WILD-TYPE  35 656
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PLXNA3 MUTATED      0   10
  PLXNA3 WILD-TYPE   35  656
                        clus
vv                       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO             10              656
[1] 2 2
[1] FALSE

Clustering(116) Variable = EPS8L1 MUTATION ANALYSIS
D116V1, survival
                  sevent
clus2                0   1
  EPS8L1 MUTATED     3   1
  EPS8L1 WILD-TYPE 450 333
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
               4              783 
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
               1              333 
$`EPS8L1 MUTATED`
TCGA-32-2634 TCGA-41-6646 TCGA-CS-5393 TCGA-DU-6392 
       22.78        12.46        40.18       211.17 

$`EPS8L1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
        8.84        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
           12.46             0.03 
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
          211.17           182.33 
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
           31.48            16.80 
[1] "12.5 - 211.2 (31.5)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "4.1"
D116V2, continuous
D116V3, binary
                  cls
clus                 0   1
  EPS8L1 MUTATED     2   2
  EPS8L1 WILD-TYPE 276 510
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L1 MUTATED      2    2
  EPS8L1 WILD-TYPE  276  510
                        clus
vv                       EPS8L1 MUTATED EPS8L1 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              2              510
[1] 2 2
[1] FALSE
D116V4, binary
                  cls
clus                 0   1
  EPS8L1 MUTATED     2   2
  EPS8L1 WILD-TYPE 327 459
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L1 MUTATED      2    2
  EPS8L1 WILD-TYPE  327  459
        clus
vv       EPS8L1 MUTATED EPS8L1 WILD-TYPE
  FEMALE              2              327
  MALE                2              459
[1] 2 2
[1] FALSE
D116V5, binary
                  cls
clus                 0   1
  EPS8L1 MUTATED     1   3
  EPS8L1 WILD-TYPE 231 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L1 MUTATED      1    3
  EPS8L1 WILD-TYPE  231  505
     clus
vv    EPS8L1 MUTATED EPS8L1 WILD-TYPE
  NO               1              231
  YES              3              505
[1] 2 2
[1] FALSE
D116V6, continuous
[1] "Remove cluster labels:" "EPS8L1 MUTATED"        
clus
  EPS8L1 MUTATED EPS8L1 WILD-TYPE 
               1              509 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0126       TCGA-06-0128       TCGA-06-0129       TCGA-06-0130 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0139       TCGA-06-0140       TCGA-06-0141       TCGA-06-0151 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0167       TCGA-06-0168       TCGA-06-0169 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0185 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0188       TCGA-06-0192       TCGA-06-0195       TCGA-06-0214 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0238       TCGA-06-0240       TCGA-06-0241 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0646       TCGA-06-0648       TCGA-06-0686 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0878 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-5408       TCGA-06-5410       TCGA-06-5411       TCGA-06-5412 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-5413       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-5418       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6695       TCGA-06-6697 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-06-6700       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5299       TCGA-12-5301 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-14-0740       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-4157       TCGA-15-0742       TCGA-19-1390 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5954       TCGA-19-5958 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5139       TCGA-26-6173 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-2502       TCGA-28-2509 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5219       TCGA-28-5220 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-2615       TCGA-32-2638 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-32-4213       TCGA-41-2571       TCGA-41-2573       TCGA-41-2575 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-CS-4938       TCGA-CS-4941       TCGA-CS-4942       TCGA-CS-4943 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5395       TCGA-CS-5396 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6290 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-CS-6665       TCGA-CS-6666       TCGA-CS-6667       TCGA-CS-6668 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-CS-6669       TCGA-DB-5274       TCGA-DB-A4XE       TCGA-DB-A64L 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DB-A64Q       TCGA-DB-A64R       TCGA-DB-A64S       TCGA-DB-A64U 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DB-A64V       TCGA-DB-A64W       TCGA-DB-A64X       TCGA-DB-A75L 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DB-A75O       TCGA-DH-5140       TCGA-DH-5142       TCGA-DH-5143 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DH-5144       TCGA-DH-A66B       TCGA-DH-A66D       TCGA-DH-A66F 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DH-A66G       TCGA-DH-A7UR       TCGA-DH-A7UU       TCGA-DH-A7UV 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-5851       TCGA-DU-5852       TCGA-DU-5853       TCGA-DU-5854 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-5855       TCGA-DU-5870       TCGA-DU-5871       TCGA-DU-5874 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-6396       TCGA-DU-6401       TCGA-DU-6403       TCGA-DU-6404 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-6405       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7011       TCGA-DU-7013       TCGA-DU-7015 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7294       TCGA-DU-7298 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-7299       TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-7304       TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-8161       TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8165 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TU       TCGA-DU-A5TW       TCGA-DU-A6S2 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-A6S6       TCGA-DU-A6S7       TCGA-DU-A6S8       TCGA-DU-A76R 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-A7T6       TCGA-DU-A7T8       TCGA-DU-A7TA       TCGA-DU-A7TB 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-DU-A7TC       TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-E1-5302 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-A7YE       TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-A7YK       TCGA-E1-A7YL       TCGA-E1-A7YM       TCGA-E1-A7YN 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-A7YO       TCGA-E1-A7YQ       TCGA-E1-A7YS       TCGA-E1-A7YV 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2       TCGA-E1-A7Z4 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-E1-A7Z6       TCGA-FG-5963       TCGA-FG-5965       TCGA-FG-6688 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-FG-7638       TCGA-FG-8181       TCGA-FG-8185       TCGA-FG-8186 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-A4MT 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-FG-A60L 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-FG-A6J1       TCGA-FG-A6J3       TCGA-FG-A711       TCGA-FG-A713 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-FG-A87Q       TCGA-HT-7468       TCGA-HT-7470       TCGA-HT-7475 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7485 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7609       TCGA-HT-7611       TCGA-HT-7686 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-7689       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7858 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7884       TCGA-HT-8013       TCGA-HT-8105 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-8113       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R7 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-A5RA       TCGA-HT-A5RC       TCGA-HT-A615       TCGA-HT-A617 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-A618       TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A61C 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-HT-A74L       TCGA-IK-7675       TCGA-KT-A74X       TCGA-KT-A7W1 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-P5-A5F0       TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-P5-A731       TCGA-QH-A65R       TCGA-QH-A65S       TCGA-QH-A65V 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-QH-A6CZ       TCGA-QH-A6X3       TCGA-QH-A6X4       TCGA-QH-A6X5 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-QH-A6X8       TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-QH-A86X       TCGA-QH-A870       TCGA-RY-A83Y       TCGA-RY-A840 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-RY-A845       TCGA-RY-A847       TCGA-S9-A6TS       TCGA-S9-A6TU 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A6TV       TCGA-S9-A6TW       TCGA-S9-A6TX       TCGA-S9-A6TY 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A6TZ       TCGA-S9-A6U0       TCGA-S9-A6U1       TCGA-S9-A6U2 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U8       TCGA-S9-A6UA 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A6UB       TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A6WH       TCGA-S9-A6WI       TCGA-S9-A6WL       TCGA-S9-A6WM 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WO       TCGA-S9-A6WP       TCGA-S9-A6WQ 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A7IQ       TCGA-S9-A7IS       TCGA-S9-A7IX       TCGA-S9-A7IY 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A7IZ       TCGA-S9-A7J0       TCGA-S9-A7J1       TCGA-S9-A7J2 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A7J3       TCGA-S9-A7QW       TCGA-S9-A7QX       TCGA-S9-A7QY 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A7QZ       TCGA-S9-A7R1       TCGA-S9-A7R2       TCGA-S9-A7R3 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A7R4       TCGA-S9-A7R7       TCGA-S9-A7R8       TCGA-S9-A89V 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-S9-A89Z       TCGA-TM-A7C3       TCGA-TM-A7C4       TCGA-TM-A7C5 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TM-A7CA       TCGA-TM-A7CF       TCGA-TM-A84B       TCGA-TM-A84C 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TM-A84F       TCGA-TM-A84G       TCGA-TM-A84H       TCGA-TM-A84I 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TM-A84J       TCGA-TM-A84L       TCGA-TM-A84M       TCGA-TM-A84O 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TM-A84Q       TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TM-A84T 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TQ-A7RG       TCGA-TQ-A7RK       TCGA-TQ-A7RM       TCGA-TQ-A7RN 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TQ-A7RO       TCGA-TQ-A7RP       TCGA-TQ-A7RQ       TCGA-TQ-A7RR 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TQ-A7RS       TCGA-TQ-A7RU       TCGA-TQ-A7RV       TCGA-TQ-A7RW 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-TQ-A8XE       TCGA-VM-A8C8       TCGA-VM-A8CA       TCGA-VM-A8CD 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-VM-A8CE       TCGA-VM-A8CF       TCGA-VM-A8CH       TCGA-WY-A858 
"EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" "EPS8L1 WILD-TYPE" 
      TCGA-WY-A859 
"EPS8L1 WILD-TYPE" 
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  EPS8L1 MUTATED             2                             0                0
  EPS8L1 WILD-TYPE         190                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  EPS8L1 MUTATED                   0                   0
  EPS8L1 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  EPS8L1 MUTATED                                 2
  EPS8L1 WILD-TYPE                             263
D116V7, multiclass
                                 clus
vv                                EPS8L1 MUTATED EPS8L1 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  EPS8L1 MUTATED                                  0     0
  EPS8L1 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  EPS8L1 MUTATED                           0     4
  EPS8L1 WILD-TYPE                        38   718
D116V8, multiclass
                                  clus
vv                                 EPS8L1 MUTATED EPS8L1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D116V9, binary
                  cls
clus                 0   1
  EPS8L1 MUTATED     0   3
  EPS8L1 WILD-TYPE  35 663
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L1 MUTATED      0    3
  EPS8L1 WILD-TYPE   35  663
                        clus
vv                       EPS8L1 MUTATED EPS8L1 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              3              663
[1] 2 2
[1] FALSE

Clustering(117) Variable = PRG4 MUTATION ANALYSIS
D117V1, survival
                sevent
clus2              0   1
  PRG4 MUTATED     8   2
  PRG4 WILD-TYPE 445 332
  PRG4 MUTATED PRG4 WILD-TYPE 
            10            777 
  PRG4 MUTATED PRG4 WILD-TYPE 
             2            332 
$`PRG4 MUTATED`
TCGA-15-1444 TCGA-19-5959 TCGA-DH-A66F TCGA-FG-A70Z TCGA-HT-7854 TCGA-HT-8109 
       50.53        16.80        17.19        10.78        39.48         5.56 
TCGA-HT-A618 TCGA-QH-A6CY TCGA-S9-A6WO TCGA-TQ-A7RF 
       16.83         2.20        18.61        21.37 

$`PRG4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.42        13.78         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5960 
       18.90         4.73        12.10         1.78        14.07        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       42.05        27.81        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       16.44        22.26        28.54        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       14.53        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 
        6.25         0.10         0.46         2.50        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A619 
        5.33         2.70        16.93         1.81        16.14        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       31.10        19.86        26.47        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       18.61        14.93        23.80        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  PRG4 MUTATED PRG4 WILD-TYPE 
          2.20           0.03 
  PRG4 MUTATED PRG4 WILD-TYPE 
         50.53         211.17 
  PRG4 MUTATED PRG4 WILD-TYPE 
         17.01          16.73 
[1] "2.2 - 50.5 (17.0)"  "0.0 - 211.2 (16.7)"
[1] "hr=" "1.9"
D117V2, continuous
D117V3, binary
                cls
clus               0   1
  PRG4 MUTATED     2   8
  PRG4 WILD-TYPE 276 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG4 MUTATED      2    8
  PRG4 WILD-TYPE  276  504
                        clus
vv                       PRG4 MUTATED PRG4 WILD-TYPE
  BRAIN                             2            276
  CENTRAL NERVOUS SYSTEM            8            504
[1] 2 2
[1] FALSE
D117V4, binary
                cls
clus               0   1
  PRG4 MUTATED     4   6
  PRG4 WILD-TYPE 325 455
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG4 MUTATED      4    6
  PRG4 WILD-TYPE  325  455
        clus
vv       PRG4 MUTATED PRG4 WILD-TYPE
  FEMALE            4            325
  MALE              6            455
[1] 2 2
[1] FALSE
D117V5, binary
                cls
clus               0   1
  PRG4 MUTATED     3   7
  PRG4 WILD-TYPE 229 501
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG4 MUTATED      3    7
  PRG4 WILD-TYPE  229  501
     clus
vv    PRG4 MUTATED PRG4 WILD-TYPE
  NO             3            229
  YES            7            501
[1] 2 2
[1] FALSE
D117V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PRG4 MUTATED             3                             1                2
  PRG4 WILD-TYPE         189                             8              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PRG4 MUTATED                   3                   0
  PRG4 WILD-TYPE               187                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PRG4 MUTATED                                 1
  PRG4 WILD-TYPE                             264
D117V7, multiclass
                                 clus
vv                                PRG4 MUTATED PRG4 WILD-TYPE
  ASTROCYTOMA                                3            189
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          3            187
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PRG4 MUTATED                                  0     0
  PRG4 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PRG4 MUTATED                           1     9
  PRG4 WILD-TYPE                        37   713
D117V8, multiclass
                                  clus
vv                                 PRG4 MUTATED PRG4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   1             37
  WHITE                                       9            713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D117V9, binary
                cls
clus               0   1
  PRG4 MUTATED     1   9
  PRG4 WILD-TYPE  34 657
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG4 MUTATED      1    9
  PRG4 WILD-TYPE   34  657
                        clus
vv                       PRG4 MUTATED PRG4 WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            9            657
[1] 2 2
[1] FALSE

Clustering(118) Variable = RFX4 MUTATION ANALYSIS
D118V1, survival
                sevent
clus2              0   1
  RFX4 MUTATED     4   2
  RFX4 WILD-TYPE 449 332
  RFX4 MUTATED RFX4 WILD-TYPE 
             6            781 
  RFX4 MUTATED RFX4 WILD-TYPE 
             2            332 
$`RFX4 MUTATED`
TCGA-14-1043 TCGA-19-2623 TCGA-DB-A75K TCGA-DH-A7US TCGA-DU-6392 TCGA-DU-8162 
        0.79         7.53        12.10        23.21       211.17        14.60 

$`RFX4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        5.39         2.89        28.93         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        5.06         9.67         4.87         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7UT TCGA-DH-A7UU 
       27.81        17.19        17.19        54.25        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 
       23.31        41.98         2.76         5.10        23.74        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  RFX4 MUTATED RFX4 WILD-TYPE 
          0.79           0.03 
  RFX4 MUTATED RFX4 WILD-TYPE 
        211.17         182.33 
  RFX4 MUTATED RFX4 WILD-TYPE 
         13.35          16.83 
[1] "0.8 - 211.2 (13.3)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.9"
D118V2, continuous
D118V3, binary
                cls
clus               0   1
  RFX4 MUTATED     2   4
  RFX4 WILD-TYPE 276 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  RFX4 MUTATED      2    4
  RFX4 WILD-TYPE  276  508
                        clus
vv                       RFX4 MUTATED RFX4 WILD-TYPE
  BRAIN                             2            276
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D118V4, binary
                cls
clus               0   1
  RFX4 MUTATED     3   3
  RFX4 WILD-TYPE 326 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  RFX4 MUTATED      3    3
  RFX4 WILD-TYPE  326  458
        clus
vv       RFX4 MUTATED RFX4 WILD-TYPE
  FEMALE            3            326
  MALE              3            458
[1] 2 2
[1] FALSE
D118V5, binary
                cls
clus               0   1
  RFX4 MUTATED     1   5
  RFX4 WILD-TYPE 231 503
[1] "tbl2"
                cls
clus             [,1] [,2]
  RFX4 MUTATED      1    5
  RFX4 WILD-TYPE  231  503
     clus
vv    RFX4 MUTATED RFX4 WILD-TYPE
  NO             1            231
  YES            5            503
[1] 2 2
[1] FALSE
D118V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  RFX4 MUTATED             1                             0                2
  RFX4 WILD-TYPE         191                             9              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  RFX4 MUTATED                   1                   0
  RFX4 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  RFX4 MUTATED                                 2
  RFX4 WILD-TYPE                             263
D118V7, multiclass
                                 clus
vv                                RFX4 MUTATED RFX4 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            2            263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RFX4 MUTATED                                  0     0
  RFX4 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RFX4 MUTATED                           0     6
  RFX4 WILD-TYPE                        38   716
D118V8, multiclass
                                  clus
vv                                 RFX4 MUTATED RFX4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D118V9, binary
                cls
clus               0   1
  RFX4 MUTATED     0   5
  RFX4 WILD-TYPE  35 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  RFX4 MUTATED      0    5
  RFX4 WILD-TYPE   35  661
                        clus
vv                       RFX4 MUTATED RFX4 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(119) Variable = MYT1 MUTATION ANALYSIS
D119V1, survival
                sevent
clus2              0   1
  MYT1 MUTATED     4   2
  MYT1 WILD-TYPE 449 332
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            781 
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            332 
$`MYT1 MUTATED`
TCGA-DU-6392 TCGA-DU-7299 TCGA-HT-8018 TCGA-S9-A7R7 TCGA-TM-A84F TCGA-TM-A84H 
      211.17        44.02        37.87        98.63        59.05        30.44 

$`MYT1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R8 TCGA-S9-A89V 
      169.84        10.39        99.06        30.05        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       24.92        16.18        40.64        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  MYT1 MUTATED MYT1 WILD-TYPE 
         30.44           0.03 
  MYT1 MUTATED MYT1 WILD-TYPE 
        211.17         182.33 
  MYT1 MUTATED MYT1 WILD-TYPE 
        51.535         16.700 
[1] "30.4 - 211.2 (51.5)" "0.0 - 182.3 (16.7)" 
[1] "hr=" "3.6"
D119V2, continuous
D119V3, binary
                cls
clus               0   1
  MYT1 MUTATED     0   6
  MYT1 WILD-TYPE 278 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYT1 MUTATED      0    6
  MYT1 WILD-TYPE  278  506
                        clus
vv                       MYT1 MUTATED MYT1 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            6            506
[1] 2 2
[1] FALSE
D119V4, binary
                cls
clus               0   1
  MYT1 MUTATED     3   3
  MYT1 WILD-TYPE 326 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYT1 MUTATED      3    3
  MYT1 WILD-TYPE  326  458
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  FEMALE            3            326
  MALE              3            458
[1] 2 2
[1] FALSE
D119V5, binary
                cls
clus               0   1
  MYT1 MUTATED     0   6
  MYT1 WILD-TYPE 232 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYT1 MUTATED      0    6
  MYT1 WILD-TYPE  232  502
     clus
vv    MYT1 MUTATED MYT1 WILD-TYPE
  NO             0            232
  YES            6            502
[1] 2 2
[1] FALSE
D119V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MYT1 MUTATED             4                             0                2
  MYT1 WILD-TYPE         188                             9              128
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MYT1 MUTATED                   0                   0
  MYT1 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  MYT1 MUTATED                                 0
  MYT1 WILD-TYPE                             265
D119V7, multiclass
                                 clus
vv                                MYT1 MUTATED MYT1 WILD-TYPE
  ASTROCYTOMA                                4            188
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           2            128
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYT1 MUTATED                                  0     0
  MYT1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  MYT1 MUTATED                           0     6
  MYT1 WILD-TYPE                        38   716
D119V8, multiclass
                                  clus
vv                                 MYT1 MUTATED MYT1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D119V9, binary
                cls
clus               0   1
  MYT1 MUTATED     0   6
  MYT1 WILD-TYPE  35 660
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYT1 MUTATED      0    6
  MYT1 WILD-TYPE   35  660
                        clus
vv                       MYT1 MUTATED MYT1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            6            660
[1] 2 2
[1] FALSE

Clustering(120) Variable = GFRA4 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2               0   1
  GFRA4 MUTATED     1   2
  GFRA4 WILD-TYPE 452 332
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              3             784 
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              2             332 
$`GFRA4 MUTATED`
TCGA-19-5958 TCGA-76-4925 TCGA-FG-8185 
       14.07         4.80        14.24 

$`GFRA4 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5959 
        8.02        18.90         4.73        12.10         1.78        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 
       20.61        20.09        28.34        13.68        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  GFRA4 MUTATED GFRA4 WILD-TYPE 
           4.80            0.03 
  GFRA4 MUTATED GFRA4 WILD-TYPE 
          14.24          211.17 
  GFRA4 MUTATED GFRA4 WILD-TYPE 
          14.07           16.88 
[1] "4.8 - 14.2 (14.1)"  "0.0 - 211.2 (16.9)"
[1] "hr=" "3.2"
D120V2, continuous
D120V3, binary
                 cls
clus                0   1
  GFRA4 MUTATED     2   1
  GFRA4 WILD-TYPE 276 511
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA4 MUTATED      2    1
  GFRA4 WILD-TYPE  276  511
                        clus
vv                       GFRA4 MUTATED GFRA4 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             1             511
[1] 2 2
[1] FALSE
D120V4, binary
                 cls
clus                0   1
  GFRA4 MUTATED     0   3
  GFRA4 WILD-TYPE 329 458
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA4 MUTATED      0    3
  GFRA4 WILD-TYPE  329  458
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  FEMALE             0             329
  MALE               3             458
[1] 2 2
[1] FALSE
D120V5, binary
                 cls
clus                0   1
  GFRA4 MUTATED     0   3
  GFRA4 WILD-TYPE 232 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA4 MUTATED      0    3
  GFRA4 WILD-TYPE  232  505
     clus
vv    GFRA4 MUTATED GFRA4 WILD-TYPE
  NO              0             232
  YES             3             505
[1] 2 2
[1] FALSE
D120V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GFRA4 MUTATED             1                             0                0
  GFRA4 WILD-TYPE         191                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GFRA4 MUTATED                   0                   0
  GFRA4 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  GFRA4 MUTATED                                 2
  GFRA4 WILD-TYPE                             263
D120V7, multiclass
                                 clus
vv                                GFRA4 MUTATED GFRA4 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GFRA4 MUTATED                                  0     0
  GFRA4 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  GFRA4 MUTATED                           0     3
  GFRA4 WILD-TYPE                        38   719
D120V8, multiclass
                                  clus
vv                                 GFRA4 MUTATED GFRA4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        3             719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D120V9, binary
                 cls
clus                0   1
  GFRA4 MUTATED     0   3
  GFRA4 WILD-TYPE  35 663
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA4 MUTATED      0    3
  GFRA4 WILD-TYPE   35  663
                        clus
vv                       GFRA4 MUTATED GFRA4 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             3             663
[1] 2 2
[1] FALSE

Clustering(121) Variable = PASD1 MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2               0   1
  PASD1 MUTATED     6   2
  PASD1 WILD-TYPE 447 332
  PASD1 MUTATED PASD1 WILD-TYPE 
              8             779 
  PASD1 MUTATED PASD1 WILD-TYPE 
              2             332 
$`PASD1 MUTATED`
TCGA-06-6698 TCGA-19-5954 TCGA-41-3393 TCGA-81-5911 TCGA-HT-7877 TCGA-HT-A5R9 
        4.77        12.10         4.44        17.72         0.13         0.07 
TCGA-RY-A845 TCGA-S9-A6WQ 
       19.59        14.07 

$`PASD1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.32        12.85         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       18.90         4.73         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       18.64        36.20         1.61        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7879 TCGA-HT-7880 
        0.49        23.61        37.15         0.33         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5RA TCGA-HT-A5RB 
        0.23        26.04         0.13        20.22        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
        9.90        28.08         2.07        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  PASD1 MUTATED PASD1 WILD-TYPE 
           0.07            0.03 
  PASD1 MUTATED PASD1 WILD-TYPE 
          19.59          211.17 
  PASD1 MUTATED PASD1 WILD-TYPE 
          8.435          16.930 
[1] "0.1 - 19.6 (8.4)"   "0.0 - 211.2 (16.9)"
[1] "hr=" "1.4"
D121V2, continuous
D121V3, binary
                 cls
clus                0   1
  PASD1 MUTATED     4   4
  PASD1 WILD-TYPE 274 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PASD1 MUTATED      4    4
  PASD1 WILD-TYPE  274  508
                        clus
vv                       PASD1 MUTATED PASD1 WILD-TYPE
  BRAIN                              4             274
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D121V4, binary
                 cls
clus                0   1
  PASD1 MUTATED     7   1
  PASD1 WILD-TYPE 322 460
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PASD1 MUTATED      7    1
  PASD1 WILD-TYPE  322  460
        clus
vv       PASD1 MUTATED PASD1 WILD-TYPE
  FEMALE             7             322
  MALE               1             460
[1] 2 2
[1] FALSE
D121V5, binary
                 cls
clus                0   1
  PASD1 MUTATED     3   4
  PASD1 WILD-TYPE 229 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PASD1 MUTATED      3    4
  PASD1 WILD-TYPE  229  504
     clus
vv    PASD1 MUTATED PASD1 WILD-TYPE
  NO              3             229
  YES             4             504
[1] 2 2
[1] FALSE
D121V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PASD1 MUTATED             0                             0                2
  PASD1 WILD-TYPE         192                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PASD1 MUTATED                   2                   0
  PASD1 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  PASD1 MUTATED                                 4
  PASD1 WILD-TYPE                             261
D121V7, multiclass
                                 clus
vv                                PASD1 MUTATED PASD1 WILD-TYPE
  ASTROCYTOMA                                 0             192
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             4             261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PASD1 MUTATED                                  0     0
  PASD1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  PASD1 MUTATED                           0     8
  PASD1 WILD-TYPE                        38   714
D121V8, multiclass
                                  clus
vv                                 PASD1 MUTATED PASD1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        8             714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D121V9, binary
                 cls
clus                0   1
  PASD1 MUTATED     0   7
  PASD1 WILD-TYPE  35 659
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PASD1 MUTATED      0    7
  PASD1 WILD-TYPE   35  659
                        clus
vv                       PASD1 MUTATED PASD1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             7             659
[1] 2 2
[1] FALSE

Clustering(122) Variable = TNFRSF9 MUTATION ANALYSIS
D122V1, survival
                   sevent
clus2                 0   1
  TNFRSF9 MUTATED     3   1
  TNFRSF9 WILD-TYPE 450 333
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                4               783 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                1               333 
$`TNFRSF9 MUTATED`
TCGA-19-5954 TCGA-FG-6688 TCGA-FG-8182 TCGA-FG-A713 
       12.10        18.77        13.68        20.45 

$`TNFRSF9 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
        8.02        18.90         4.73         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
       47.77        25.48        52.21        36.82        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.61        20.09        28.34        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
            12.10              0.03 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
            20.45            211.17 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
           16.225            16.830 
[1] "12.1 - 20.4 (16.2)" "0.0 - 211.2 (16.8)"
[1] "hr=" "1.3"
D122V2, continuous
D122V3, binary
                   cls
clus                  0   1
  TNFRSF9 MUTATED     1   3
  TNFRSF9 WILD-TYPE 277 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TNFRSF9 MUTATED      1    3
  TNFRSF9 WILD-TYPE  277  509
                        clus
vv                       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  BRAIN                                1               277
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D122V4, binary
                   cls
clus                  0   1
  TNFRSF9 MUTATED     3   1
  TNFRSF9 WILD-TYPE 326 460
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TNFRSF9 MUTATED      3    1
  TNFRSF9 WILD-TYPE  326  460
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  FEMALE               3               326
  MALE                 1               460
[1] 2 2
[1] FALSE
D122V5, binary
                   cls
clus                  0   1
  TNFRSF9 MUTATED     1   3
  TNFRSF9 WILD-TYPE 231 505
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TNFRSF9 MUTATED      1    3
  TNFRSF9 WILD-TYPE  231  505
     clus
vv    TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  NO                1               231
  YES               3               505
[1] 2 2
[1] FALSE
D122V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TNFRSF9 MUTATED             1                             0                1
  TNFRSF9 WILD-TYPE         191                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TNFRSF9 MUTATED                   1                   0
  TNFRSF9 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  TNFRSF9 MUTATED                                 1
  TNFRSF9 WILD-TYPE                             264
D122V7, multiclass
                                 clus
vv                                TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  ASTROCYTOMA                                   1               191
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               1               264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TNFRSF9 MUTATED                                  0     0
  TNFRSF9 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  TNFRSF9 MUTATED                           1     3
  TNFRSF9 WILD-TYPE                        37   719
D122V8, multiclass
                                  clus
vv                                 TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      1                37
  WHITE                                          3               719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D122V9, binary
                   cls
clus                  0   1
  TNFRSF9 MUTATED     0   4
  TNFRSF9 WILD-TYPE  35 662
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TNFRSF9 MUTATED      0    4
  TNFRSF9 WILD-TYPE   35  662
                        clus
vv                       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               4               662
[1] 2 2
[1] FALSE

Clustering(123) Variable = EGR1 MUTATION ANALYSIS
D123V1, survival
                sevent
clus2              0   1
  EGR1 MUTATED     2   3
  EGR1 WILD-TYPE 451 331
  EGR1 MUTATED EGR1 WILD-TYPE 
             5            782 
  EGR1 MUTATED EGR1 WILD-TYPE 
             3            331 
$`EGR1 MUTATED`
TCGA-19-2625 TCGA-27-2527 TCGA-32-2615 TCGA-DU-6392 TCGA-P5-A5F2 
        4.08        14.40        15.95       211.17         7.63 

$`EGR1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        7.59         2.86        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        15.02         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  EGR1 MUTATED EGR1 WILD-TYPE 
          4.08           0.03 
  EGR1 MUTATED EGR1 WILD-TYPE 
        211.17         182.33 
  EGR1 MUTATED EGR1 WILD-TYPE 
         14.40          16.88 
[1] "4.1 - 211.2 (14.4)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.1"
D123V2, continuous
D123V3, binary
                cls
clus               0   1
  EGR1 MUTATED     3   2
  EGR1 WILD-TYPE 275 510
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGR1 MUTATED      3    2
  EGR1 WILD-TYPE  275  510
                        clus
vv                       EGR1 MUTATED EGR1 WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            2            510
[1] 2 2
[1] FALSE
D123V4, binary
                cls
clus               0   1
  EGR1 MUTATED     3   2
  EGR1 WILD-TYPE 326 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGR1 MUTATED      3    2
  EGR1 WILD-TYPE  326  459
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  FEMALE            3            326
  MALE              2            459
[1] 2 2
[1] FALSE
D123V5, binary
                cls
clus               0   1
  EGR1 MUTATED     2   3
  EGR1 WILD-TYPE 230 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGR1 MUTATED      2    3
  EGR1 WILD-TYPE  230  505
     clus
vv    EGR1 MUTATED EGR1 WILD-TYPE
  NO             2            230
  YES            3            505
[1] 2 2
[1] FALSE
D123V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  EGR1 MUTATED             2                             0                0
  EGR1 WILD-TYPE         190                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  EGR1 MUTATED                   0                   0
  EGR1 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  EGR1 MUTATED                                 3
  EGR1 WILD-TYPE                             262
D123V7, multiclass
                                 clus
vv                                EGR1 MUTATED EGR1 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  EGR1 MUTATED                                  0     0
  EGR1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  EGR1 MUTATED                           0     5
  EGR1 WILD-TYPE                        38   717
D123V8, multiclass
                                  clus
vv                                 EGR1 MUTATED EGR1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       5            717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D123V9, binary
                cls
clus               0   1
  EGR1 MUTATED     0   5
  EGR1 WILD-TYPE  35 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGR1 MUTATED      0    5
  EGR1 WILD-TYPE   35  661
                        clus
vv                       EGR1 MUTATED EGR1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(124) Variable = FAM126B MUTATION ANALYSIS
D124V1, survival
                   sevent
clus2                 0   1
  FAM126B MUTATED     2   5
  FAM126B WILD-TYPE 451 329
  FAM126B MUTATED FAM126B WILD-TYPE 
                7               780 
  FAM126B MUTATED FAM126B WILD-TYPE 
                5               329 
$`FAM126B MUTATED`
TCGA-02-0033 TCGA-06-0879 TCGA-19-2631 TCGA-32-1991 TCGA-DU-6392 TCGA-HT-A61B 
        2.83        40.41         7.00        16.93       211.17        17.52 
TCGA-TM-A84B 
       24.92 

$`FAM126B WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
        7.17        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
       19.50         1.18         4.67        12.69        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       16.83        21.40         6.38        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84C TCGA-TM-A84F 
       48.33        49.32        34.78        65.39        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  FAM126B MUTATED FAM126B WILD-TYPE 
             2.83              0.03 
  FAM126B MUTATED FAM126B WILD-TYPE 
           211.17            182.33 
  FAM126B MUTATED FAM126B WILD-TYPE 
           17.520            16.765 
[1] "2.8 - 211.2 (17.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.1"
D124V2, continuous
D124V3, binary
                   cls
clus                  0   1
  FAM126B MUTATED     4   4
  FAM126B WILD-TYPE 274 508
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM126B MUTATED      4    4
  FAM126B WILD-TYPE  274  508
                        clus
vv                       FAM126B MUTATED FAM126B WILD-TYPE
  BRAIN                                4               274
  CENTRAL NERVOUS SYSTEM               4               508
[1] 2 2
[1] FALSE
D124V4, binary
                   cls
clus                  0   1
  FAM126B MUTATED     3   5
  FAM126B WILD-TYPE 326 456
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM126B MUTATED      3    5
  FAM126B WILD-TYPE  326  456
        clus
vv       FAM126B MUTATED FAM126B WILD-TYPE
  FEMALE               3               326
  MALE                 5               456
[1] 2 2
[1] FALSE
D124V5, binary
                   cls
clus                  0   1
  FAM126B MUTATED     2   6
  FAM126B WILD-TYPE 230 502
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM126B MUTATED      2    6
  FAM126B WILD-TYPE  230  502
     clus
vv    FAM126B MUTATED FAM126B WILD-TYPE
  NO                2               230
  YES               6               502
[1] 2 2
[1] FALSE
D124V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FAM126B MUTATED             3                             0                0
  FAM126B WILD-TYPE         189                             9              130
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FAM126B MUTATED                   1                   0
  FAM126B WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  FAM126B MUTATED                                 4
  FAM126B WILD-TYPE                             261
D124V7, multiclass
                                 clus
vv                                FAM126B MUTATED FAM126B WILD-TYPE
  ASTROCYTOMA                                   3               189
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              0               130
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               4               261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FAM126B MUTATED                                  0     0
  FAM126B WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  FAM126B MUTATED                           0     8
  FAM126B WILD-TYPE                        38   714
D124V8, multiclass
                                  clus
vv                                 FAM126B MUTATED FAM126B WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          8               714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D124V9, binary
                   cls
clus                  0   1
  FAM126B MUTATED     1   6
  FAM126B WILD-TYPE  34 660
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM126B MUTATED      1    6
  FAM126B WILD-TYPE   34  660
                        clus
vv                       FAM126B MUTATED FAM126B WILD-TYPE
  HISPANIC OR LATINO                   1                34
  NOT HISPANIC OR LATINO               6               660
[1] 2 2
[1] FALSE

Clustering(125) Variable = SON MUTATION ANALYSIS
D125V1, survival
               sevent
clus2             0   1
  SON MUTATED     7   2
  SON WILD-TYPE 446 332
  SON MUTATED SON WILD-TYPE 
            9           778 
  SON MUTATED SON WILD-TYPE 
            2           332 
$`SON MUTATED`
TCGA-32-4213 TCGA-DB-5280 TCGA-DU-5874 TCGA-DU-6392 TCGA-HT-7471 TCGA-HT-8564 
       19.86        36.56        15.16       211.17         0.13        15.72 
TCGA-P5-A5EV TCGA-S9-A6UA TCGA-VM-A8CD 
        0.23         5.85         7.89 

$`SON WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 
       47.93        72.92        50.86        91.13        44.52        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       17.49        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
       40.11         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DS 
        0.23        29.59        34.19        13.74        28.27         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       42.77        14.40        14.40         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  SON MUTATED SON WILD-TYPE 
         0.13          0.03 
  SON MUTATED SON WILD-TYPE 
       211.17        182.33 
  SON MUTATED SON WILD-TYPE 
        15.16         16.88 
[1] "0.1 - 211.2 (15.2)" "0.0 - 182.3 (16.9)"
[1] "hr=" "2.3"
D125V2, continuous
D125V3, binary
               cls
clus              0   1
  SON MUTATED     1   8
  SON WILD-TYPE 277 504
[1] "tbl2"
               cls
clus            [,1] [,2]
  SON MUTATED      1    8
  SON WILD-TYPE  277  504
                        clus
vv                       SON MUTATED SON WILD-TYPE
  BRAIN                            1           277
  CENTRAL NERVOUS SYSTEM           8           504
[1] 2 2
[1] FALSE
D125V4, binary
               cls
clus              0   1
  SON MUTATED     4   5
  SON WILD-TYPE 325 456
[1] "tbl2"
               cls
clus            [,1] [,2]
  SON MUTATED      4    5
  SON WILD-TYPE  325  456
        clus
vv       SON MUTATED SON WILD-TYPE
  FEMALE           4           325
  MALE             5           456
[1] 2 2
[1] FALSE
D125V5, binary
               cls
clus              0   1
  SON MUTATED     4   3
  SON WILD-TYPE 228 505
[1] "tbl2"
               cls
clus            [,1] [,2]
  SON MUTATED      4    3
  SON WILD-TYPE  228  505
     clus
vv    SON MUTATED SON WILD-TYPE
  NO            4           228
  YES           3           505
[1] 2 2
[1] FALSE
D125V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SON MUTATED             5                             0                1
  SON WILD-TYPE         187                             9              129
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SON MUTATED                   2                   0
  SON WILD-TYPE               188                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  SON MUTATED                                 1
  SON WILD-TYPE                             264
D125V7, multiclass
                                 clus
vv                                SON MUTATED SON WILD-TYPE
  ASTROCYTOMA                               5           187
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          1           129
  OLIGODENDROGLIOMA                         2           188
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           1           264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SON MUTATED                                  0     0
  SON WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  SON MUTATED                           0     9
  SON WILD-TYPE                        38   713
D125V8, multiclass
                                  clus
vv                                 SON MUTATED SON WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  0            38
  WHITE                                      9           713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D125V9, binary
               cls
clus              0   1
  SON MUTATED     1   7
  SON WILD-TYPE  34 659
[1] "tbl2"
               cls
clus            [,1] [,2]
  SON MUTATED      1    7
  SON WILD-TYPE   34  659
                        clus
vv                       SON MUTATED SON WILD-TYPE
  HISPANIC OR LATINO               1            34
  NOT HISPANIC OR LATINO           7           659
[1] 2 2
[1] FALSE

Clustering(126) Variable = AMPD1 MUTATION ANALYSIS
D126V1, survival
                 sevent
clus2               0   1
  AMPD1 MUTATED     2   5
  AMPD1 WILD-TYPE 451 329
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              7             780 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              5             329 
$`AMPD1 MUTATED`
TCGA-12-5295 TCGA-26-5136 TCGA-32-2638 TCGA-DU-6392 TCGA-DU-A76K TCGA-FG-A711 
       14.93        18.97        25.18       211.17        11.41        48.69 
TCGA-TM-A84Q 
       25.38 

$`AMPD1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       34.92        14.53         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.88         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       22.29        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       28.54        10.78        36.66        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       24.79        33.24        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  AMPD1 MUTATED AMPD1 WILD-TYPE 
          11.41            0.03 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
         211.17          182.33 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
         25.180          16.765 
[1] "11.4 - 211.2 (25.2)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "1.1"
D126V2, continuous
D126V3, binary
                 cls
clus                0   1
  AMPD1 MUTATED     3   4
  AMPD1 WILD-TYPE 275 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      3    4
  AMPD1 WILD-TYPE  275  508
                        clus
vv                       AMPD1 MUTATED AMPD1 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D126V4, binary
                 cls
clus                0   1
  AMPD1 MUTATED     4   3
  AMPD1 WILD-TYPE 325 458
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      4    3
  AMPD1 WILD-TYPE  325  458
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  FEMALE             4             325
  MALE               3             458
[1] 2 2
[1] FALSE
D126V5, binary
                 cls
clus                0   1
  AMPD1 MUTATED     2   4
  AMPD1 WILD-TYPE 230 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      2    4
  AMPD1 WILD-TYPE  230  504
     clus
vv    AMPD1 MUTATED AMPD1 WILD-TYPE
  NO              2             230
  YES             4             504
[1] 2 2
[1] FALSE
D126V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  AMPD1 MUTATED             2                             0                0
  AMPD1 WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  AMPD1 MUTATED                   2                   0
  AMPD1 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  AMPD1 MUTATED                                 3
  AMPD1 WILD-TYPE                             262
D126V7, multiclass
                                 clus
vv                                AMPD1 MUTATED AMPD1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AMPD1 MUTATED                                  0     0
  AMPD1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  AMPD1 MUTATED                           0     7
  AMPD1 WILD-TYPE                        38   715
D126V8, multiclass
                                  clus
vv                                 AMPD1 MUTATED AMPD1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D126V9, binary
                 cls
clus                0   1
  AMPD1 MUTATED     0   7
  AMPD1 WILD-TYPE  35 659
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      0    7
  AMPD1 WILD-TYPE   35  659
                        clus
vv                       AMPD1 MUTATED AMPD1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             7             659
[1] 2 2
[1] FALSE

Clustering(127) Variable = TNFSF9 MUTATION ANALYSIS
D127V1, survival
                  sevent
clus2                0   1
  TNFSF9 MUTATED     3   2
  TNFSF9 WILD-TYPE 450 332
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               5              782 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               2              332 
$`TNFSF9 MUTATED`
TCGA-06-6695 TCGA-12-5301 TCGA-76-6282 TCGA-P5-A5EW TCGA-TQ-A7RG 
        8.32         2.04        17.06         6.71        19.69 

$`TNFSF9 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.53        14.93         3.22        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       14.93        23.80        21.37        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
            2.04             0.03 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
           19.69           211.17 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
            8.32            16.83 
[1] "2.0 - 19.7 (8.3)"   "0.0 - 211.2 (16.8)"
[1] "hr=" "1.9"
D127V2, continuous
D127V3, binary
                  cls
clus                 0   1
  TNFSF9 MUTATED     3   2
  TNFSF9 WILD-TYPE 275 510
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNFSF9 MUTATED      3    2
  TNFSF9 WILD-TYPE  275  510
                        clus
vv                       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  BRAIN                               3              275
  CENTRAL NERVOUS SYSTEM              2              510
[1] 2 2
[1] FALSE
D127V4, binary
                  cls
clus                 0   1
  TNFSF9 MUTATED     1   4
  TNFSF9 WILD-TYPE 328 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNFSF9 MUTATED      1    4
  TNFSF9 WILD-TYPE  328  457
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  FEMALE              1              328
  MALE                4              457
[1] 2 2
[1] FALSE
D127V5, binary
                  cls
clus                 0   1
  TNFSF9 MUTATED     1   3
  TNFSF9 WILD-TYPE 231 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNFSF9 MUTATED      1    3
  TNFSF9 WILD-TYPE  231  505
     clus
vv    TNFSF9 MUTATED TNFSF9 WILD-TYPE
  NO               1              231
  YES              3              505
[1] 2 2
[1] FALSE
D127V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TNFSF9 MUTATED             1                             0                1
  TNFSF9 WILD-TYPE         191                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TNFSF9 MUTATED                   0                   0
  TNFSF9 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  TNFSF9 MUTATED                                 3
  TNFSF9 WILD-TYPE                             262
D127V7, multiclass
                                 clus
vv                                TNFSF9 MUTATED TNFSF9 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              3              262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TNFSF9 MUTATED                                  0     0
  TNFSF9 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  TNFSF9 MUTATED                           0     5
  TNFSF9 WILD-TYPE                        38   717
D127V8, multiclass
                                  clus
vv                                 TNFSF9 MUTATED TNFSF9 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         5              717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D127V9, binary
                  cls
clus                 0   1
  TNFSF9 MUTATED     1   4
  TNFSF9 WILD-TYPE  34 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNFSF9 MUTATED      1    4
  TNFSF9 WILD-TYPE   34  662
                        clus
vv                       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(128) Variable = MYH11 MUTATION ANALYSIS
D128V1, survival
                 sevent
clus2               0   1
  MYH11 MUTATED     9   5
  MYH11 WILD-TYPE 444 329
  MYH11 MUTATED MYH11 WILD-TYPE 
             14             773 
  MYH11 MUTATED MYH11 WILD-TYPE 
              5             329 
$`MYH11 MUTATED`
TCGA-06-0185 TCGA-06-0686 TCGA-06-6391 TCGA-19-2623 TCGA-32-2495 TCGA-DH-A66B 
       73.84        14.20         1.48         7.53        15.02        42.05 
TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-A6S3 TCGA-FG-A60L TCGA-FG-A6IZ TCGA-HT-8105 
      211.17        11.64        21.57        21.53        15.02         6.25 
TCGA-HT-A61C TCGA-P5-A733 
       17.65        13.61 

$`MYH11 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       69.90        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.10        23.57        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.79         5.39       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        4.87         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
       46.06         8.02        30.21        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
        7.04       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S6 
       24.43        26.17        24.99        33.96        25.55        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6J1 TCGA-FG-A6J3 
       18.71        23.70        14.76        17.82        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
       21.40         6.38        17.52         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  MYH11 MUTATED MYH11 WILD-TYPE 
           1.48            0.03 
  MYH11 MUTATED MYH11 WILD-TYPE 
         211.17          182.33 
  MYH11 MUTATED MYH11 WILD-TYPE 
          15.02           16.83 
[1] "1.5 - 211.2 (15.0)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.5"
D128V2, continuous
D128V3, binary
                 cls
clus                0   1
  MYH11 MUTATED     5   9
  MYH11 WILD-TYPE 273 503
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYH11 MUTATED      5    9
  MYH11 WILD-TYPE  273  503
                        clus
vv                       MYH11 MUTATED MYH11 WILD-TYPE
  BRAIN                              5             273
  CENTRAL NERVOUS SYSTEM             9             503
[1] 2 2
[1] FALSE
D128V4, binary
                 cls
clus                0   1
  MYH11 MUTATED     6   8
  MYH11 WILD-TYPE 323 453
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYH11 MUTATED      6    8
  MYH11 WILD-TYPE  323  453
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  FEMALE             6             323
  MALE               8             453
[1] 2 2
[1] FALSE
D128V5, binary
                 cls
clus                0   1
  MYH11 MUTATED     3  11
  MYH11 WILD-TYPE 229 497
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYH11 MUTATED      3   11
  MYH11 WILD-TYPE  229  497
     clus
vv    MYH11 MUTATED MYH11 WILD-TYPE
  NO              3             229
  YES            11             497
[1] 2 2
[1] FALSE
D128V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MYH11 MUTATED             4                             0                1
  MYH11 WILD-TYPE         188                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MYH11 MUTATED                   4                   1
  MYH11 WILD-TYPE               186                   3
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  MYH11 MUTATED                                 4
  MYH11 WILD-TYPE                             261
D128V7, multiclass
                                 clus
vv                                MYH11 MUTATED MYH11 WILD-TYPE
  ASTROCYTOMA                                 4             188
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           4             186
  TREATED PRIMARY GBM                         1               3
  UNTREATED PRIMARY (DE NOVO) GBM             4             261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYH11 MUTATED                                  0     0
  MYH11 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MYH11 MUTATED                           0    14
  MYH11 WILD-TYPE                        38   708
D128V8, multiclass
                                  clus
vv                                 MYH11 MUTATED MYH11 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                       14             708
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D128V9, binary
                 cls
clus                0   1
  MYH11 MUTATED     0  14
  MYH11 WILD-TYPE  35 652
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYH11 MUTATED      0   14
  MYH11 WILD-TYPE   35  652
                        clus
vv                       MYH11 MUTATED MYH11 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO            14             652
[1] 2 2
[1] FALSE

Clustering(129) Variable = FMR1 MUTATION ANALYSIS
D129V1, survival
                sevent
clus2              0   1
  FMR1 MUTATED     5   0
  FMR1 WILD-TYPE 448 334
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            782 
  FMR1 MUTATED FMR1 WILD-TYPE 
             0            334 
$`FMR1 MUTATED`
TCGA-DU-6392 TCGA-DU-A76O TCGA-FG-8188 TCGA-S9-A6WG TCGA-S9-A6WN 
      211.17        17.16        14.96        85.55        26.47 

$`FMR1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       20.09        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
       75.25       135.22        38.56        84.99        31.10        19.86 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  FMR1 MUTATED FMR1 WILD-TYPE 
         14.96           0.03 
  FMR1 MUTATED FMR1 WILD-TYPE 
        211.17         182.33 
  FMR1 MUTATED FMR1 WILD-TYPE 
        26.470         16.765 
[1] "15.0 - 211.2 (26.5)" "0.0 - 182.3 (16.8)" 
[1] "hr="     "9600000"
D129V2, continuous
D129V3, binary
                cls
clus               0   1
  FMR1 MUTATED     0   5
  FMR1 WILD-TYPE 278 507
[1] "tbl2"
                cls
clus             [,1] [,2]
  FMR1 MUTATED      0    5
  FMR1 WILD-TYPE  278  507
                        clus
vv                       FMR1 MUTATED FMR1 WILD-TYPE
  BRAIN                             0            278
  CENTRAL NERVOUS SYSTEM            5            507
[1] 2 2
[1] FALSE
D129V4, binary
                cls
clus               0   1
  FMR1 MUTATED     2   3
  FMR1 WILD-TYPE 327 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  FMR1 MUTATED      2    3
  FMR1 WILD-TYPE  327  458
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  FEMALE            2            327
  MALE              3            458
[1] 2 2
[1] FALSE
D129V5, binary
                cls
clus               0   1
  FMR1 MUTATED     1   4
  FMR1 WILD-TYPE 231 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  FMR1 MUTATED      1    4
  FMR1 WILD-TYPE  231  504
     clus
vv    FMR1 MUTATED FMR1 WILD-TYPE
  NO             1            231
  YES            4            504
[1] 2 2
[1] FALSE
D129V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FMR1 MUTATED             4                             0                1
  FMR1 WILD-TYPE         188                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FMR1 MUTATED                   0                   0
  FMR1 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  FMR1 MUTATED                                 0
  FMR1 WILD-TYPE                             265
D129V7, multiclass
                                 clus
vv                                FMR1 MUTATED FMR1 WILD-TYPE
  ASTROCYTOMA                                4            188
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            0            265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FMR1 MUTATED                                  0     0
  FMR1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  FMR1 MUTATED                           0     5
  FMR1 WILD-TYPE                        38   717
D129V8, multiclass
                                  clus
vv                                 FMR1 MUTATED FMR1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       5            717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D129V9, binary
                cls
clus               0   1
  FMR1 MUTATED     0   5
  FMR1 WILD-TYPE  35 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  FMR1 MUTATED      0    5
  FMR1 WILD-TYPE   35  661
                        clus
vv                       FMR1 MUTATED FMR1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(130) Variable = SOX13 MUTATION ANALYSIS
D130V1, survival
                 sevent
clus2               0   1
  SOX13 MUTATED     2   3
  SOX13 WILD-TYPE 451 331
  SOX13 MUTATED SOX13 WILD-TYPE 
              5             782 
  SOX13 MUTATED SOX13 WILD-TYPE 
              3             331 
$`SOX13 MUTATED`
TCGA-06-5411 TCGA-32-1991 TCGA-74-6577 TCGA-DU-6392 TCGA-DU-A7TD 
        8.35        16.93         4.34       211.17         7.50 

$`SOX13 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       31.50        11.74         3.55         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        3.45        20.91        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TG TCGA-DU-A7TJ 
      139.04        84.33        51.52        37.38        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  SOX13 MUTATED SOX13 WILD-TYPE 
           4.34            0.03 
  SOX13 MUTATED SOX13 WILD-TYPE 
         211.17          182.33 
  SOX13 MUTATED SOX13 WILD-TYPE 
           8.35           16.83 
[1] "4.3 - 211.2 (8.3)"  "0.0 - 182.3 (16.8)"
[1] "hr=" "1.1"
D130V2, continuous
D130V3, binary
                 cls
clus                0   1
  SOX13 MUTATED     3   2
  SOX13 WILD-TYPE 275 510
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SOX13 MUTATED      3    2
  SOX13 WILD-TYPE  275  510
                        clus
vv                       SOX13 MUTATED SOX13 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             2             510
[1] 2 2
[1] FALSE
D130V4, binary
                 cls
clus                0   1
  SOX13 MUTATED     1   4
  SOX13 WILD-TYPE 328 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SOX13 MUTATED      1    4
  SOX13 WILD-TYPE  328  457
        clus
vv       SOX13 MUTATED SOX13 WILD-TYPE
  FEMALE             1             328
  MALE               4             457
[1] 2 2
[1] FALSE
D130V5, binary
                 cls
clus                0   1
  SOX13 MUTATED     0   5
  SOX13 WILD-TYPE 232 503
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SOX13 MUTATED      0    5
  SOX13 WILD-TYPE  232  503
     clus
vv    SOX13 MUTATED SOX13 WILD-TYPE
  NO              0             232
  YES             5             503
[1] 2 2
[1] FALSE
D130V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SOX13 MUTATED             1                             0                1
  SOX13 WILD-TYPE         191                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SOX13 MUTATED                   0                   0
  SOX13 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  SOX13 MUTATED                                 3
  SOX13 WILD-TYPE                             262
D130V7, multiclass
                                 clus
vv                                SOX13 MUTATED SOX13 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SOX13 MUTATED                                  0     0
  SOX13 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  SOX13 MUTATED                           0     4
  SOX13 WILD-TYPE                        38   718
D130V8, multiclass
                                  clus
vv                                 SOX13 MUTATED SOX13 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        4             718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D130V9, binary
                 cls
clus                0   1
  SOX13 MUTATED     0   4
  SOX13 WILD-TYPE  35 662
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SOX13 MUTATED      0    4
  SOX13 WILD-TYPE   35  662
                        clus
vv                       SOX13 MUTATED SOX13 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             4             662
[1] 2 2
[1] FALSE

Clustering(131) Variable = ANKRD36 MUTATION ANALYSIS
D131V1, survival
                   sevent
clus2                 0   1
  ANKRD36 MUTATED     3   4
  ANKRD36 WILD-TYPE 450 330
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               780 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                4               330 
$`ANKRD36 MUTATED`
TCGA-DU-7012 TCGA-DU-A5TS TCGA-E1-5304 TCGA-E1-A7Z6 TCGA-S9-A6TS TCGA-S9-A6U6 
        6.54        31.69        41.13        32.35        62.17        35.15 
TCGA-TM-A84H 
       30.44 

$`ANKRD36 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 
      156.23       154.36        14.99       105.21         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5305 
        7.50        44.42         0.56        50.14        67.46        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       30.67        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U8 
       36.82        24.39        25.81        29.85        32.61        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       59.05        40.64        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
             6.54              0.03 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
            62.17            211.17 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
           32.350            16.715 
[1] "6.5 - 62.2 (32.4)"  "0.0 - 211.2 (16.7)"
[1] "hr=" "1.1"
D131V2, continuous
D131V3, binary
                   cls
clus                  0   1
  ANKRD36 MUTATED     0   7
  ANKRD36 WILD-TYPE 278 505
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD36 MUTATED      0    7
  ANKRD36 WILD-TYPE  278  505
                        clus
vv                       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  BRAIN                                0               278
  CENTRAL NERVOUS SYSTEM               7               505
[1] 2 2
[1] FALSE
D131V4, binary
                   cls
clus                  0   1
  ANKRD36 MUTATED     4   3
  ANKRD36 WILD-TYPE 325 458
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD36 MUTATED      4    3
  ANKRD36 WILD-TYPE  325  458
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  FEMALE               4               325
  MALE                 3               458
[1] 2 2
[1] FALSE
D131V5, binary
                   cls
clus                  0   1
  ANKRD36 MUTATED     0   7
  ANKRD36 WILD-TYPE 232 501
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD36 MUTATED      0    7
  ANKRD36 WILD-TYPE  232  501
     clus
vv    ANKRD36 MUTATED ANKRD36 WILD-TYPE
  NO                0               232
  YES               7               501
[1] 2 2
[1] FALSE
D131V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ANKRD36 MUTATED             5                             0                1
  ANKRD36 WILD-TYPE         187                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ANKRD36 MUTATED                   1                   0
  ANKRD36 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  ANKRD36 MUTATED                                 0
  ANKRD36 WILD-TYPE                             265
D131V7, multiclass
                                 clus
vv                                ANKRD36 MUTATED ANKRD36 WILD-TYPE
  ASTROCYTOMA                                   5               187
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               0               265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ANKRD36 MUTATED                                  0     0
  ANKRD36 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  ANKRD36 MUTATED                           2     5
  ANKRD36 WILD-TYPE                        36   717
D131V8, multiclass
                                  clus
vv                                 ANKRD36 MUTATED ANKRD36 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      2                36
  WHITE                                          5               717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D131V9, binary
                   cls
clus                  0   1
  ANKRD36 MUTATED     0   7
  ANKRD36 WILD-TYPE  35 659
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD36 MUTATED      0    7
  ANKRD36 WILD-TYPE   35  659
                        clus
vv                       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               7               659
[1] 2 2
[1] FALSE

Clustering(132) Variable = KLKB1 MUTATION ANALYSIS
D132V1, survival
                 sevent
clus2               0   1
  KLKB1 MUTATED     5   2
  KLKB1 WILD-TYPE 448 332
  KLKB1 MUTATED KLKB1 WILD-TYPE 
              7             780 
  KLKB1 MUTATED KLKB1 WILD-TYPE 
              2             332 
$`KLKB1 MUTATED`
TCGA-27-2519 TCGA-41-3393 TCGA-DU-6392 TCGA-HT-7475 TCGA-HT-7689 TCGA-HT-7694 
       18.08         4.44       211.17        17.42        14.96         6.90 
TCGA-HW-7490 
       45.60 

$`KLKB1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 
       30.05        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7695 TCGA-HT-7854 
        0.10         0.10         2.96        17.52        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  KLKB1 MUTATED KLKB1 WILD-TYPE 
           4.44            0.03 
  KLKB1 MUTATED KLKB1 WILD-TYPE 
         211.17          182.33 
  KLKB1 MUTATED KLKB1 WILD-TYPE 
         17.420          16.815 
[1] "4.4 - 211.2 (17.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.3"
D132V2, continuous
D132V3, binary
                 cls
clus                0   1
  KLKB1 MUTATED     2   5
  KLKB1 WILD-TYPE 276 507
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLKB1 MUTATED      2    5
  KLKB1 WILD-TYPE  276  507
                        clus
vv                       KLKB1 MUTATED KLKB1 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             5             507
[1] 2 2
[1] FALSE
D132V4, binary
                 cls
clus                0   1
  KLKB1 MUTATED     3   4
  KLKB1 WILD-TYPE 326 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLKB1 MUTATED      3    4
  KLKB1 WILD-TYPE  326  457
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  FEMALE             3             326
  MALE               4             457
[1] 2 2
[1] FALSE
D132V5, binary
                 cls
clus                0   1
  KLKB1 MUTATED     1   6
  KLKB1 WILD-TYPE 231 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLKB1 MUTATED      1    6
  KLKB1 WILD-TYPE  231  502
     clus
vv    KLKB1 MUTATED KLKB1 WILD-TYPE
  NO              1             231
  YES             6             502
[1] 2 2
[1] FALSE
D132V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KLKB1 MUTATED             2                             0                1
  KLKB1 WILD-TYPE         190                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KLKB1 MUTATED                   2                   0
  KLKB1 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  KLKB1 MUTATED                                 2
  KLKB1 WILD-TYPE                             263
D132V7, multiclass
                                 clus
vv                                KLKB1 MUTATED KLKB1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KLKB1 MUTATED                                  0     0
  KLKB1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  KLKB1 MUTATED                           0     7
  KLKB1 WILD-TYPE                        38   715
D132V8, multiclass
                                  clus
vv                                 KLKB1 MUTATED KLKB1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D132V9, binary
                 cls
clus                0   1
  KLKB1 MUTATED     0   7
  KLKB1 WILD-TYPE  35 659
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLKB1 MUTATED      0    7
  KLKB1 WILD-TYPE   35  659
                        clus
vv                       KLKB1 MUTATED KLKB1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             7             659
[1] 2 2
[1] FALSE

Clustering(133) Variable = ST3GAL6 MUTATION ANALYSIS
D133V1, survival
                   sevent
clus2                 0   1
  ST3GAL6 MUTATED     2   3
  ST3GAL6 WILD-TYPE 451 331
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
                5               782 
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
                3               331 
$`ST3GAL6 MUTATED`
TCGA-06-0747 TCGA-27-1830 TCGA-DU-6392 TCGA-DU-A7T6 TCGA-HT-7860 
        2.70         5.06       211.17        17.98         0.49 

$`ST3GAL6 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 
        8.88        18.97         1.58         7.92         2.33        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
             0.49              0.03 
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
           211.17            182.33 
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
             5.06             16.83 
[1] "0.5 - 211.2 (5.1)"  "0.0 - 182.3 (16.8)"
[1] "hr=" "1"  
D133V2, continuous
D133V3, binary
                   cls
clus                  0   1
  ST3GAL6 MUTATED     2   3
  ST3GAL6 WILD-TYPE 276 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST3GAL6 MUTATED      2    3
  ST3GAL6 WILD-TYPE  276  509
                        clus
vv                       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  BRAIN                                2               276
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D133V4, binary
                   cls
clus                  0   1
  ST3GAL6 MUTATED     3   2
  ST3GAL6 WILD-TYPE 326 459
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST3GAL6 MUTATED      3    2
  ST3GAL6 WILD-TYPE  326  459
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  FEMALE               3               326
  MALE                 2               459
[1] 2 2
[1] FALSE
D133V5, binary
                   cls
clus                  0   1
  ST3GAL6 MUTATED     0   3
  ST3GAL6 WILD-TYPE 232 505
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST3GAL6 MUTATED      0    3
  ST3GAL6 WILD-TYPE  232  505
     clus
vv    ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  NO                0               232
  YES               3               505
[1] 2 2
[1] FALSE
D133V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ST3GAL6 MUTATED             2                             0                0
  ST3GAL6 WILD-TYPE         190                             9              130
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ST3GAL6 MUTATED                   1                   0
  ST3GAL6 WILD-TYPE               189                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  ST3GAL6 MUTATED                                 2
  ST3GAL6 WILD-TYPE                             263
D133V7, multiclass
                                 clus
vv                                ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  ASTROCYTOMA                                   2               190
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              0               130
  OLIGODENDROGLIOMA                             1               189
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               2               263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ST3GAL6 MUTATED                                  0     0
  ST3GAL6 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  ST3GAL6 MUTATED                           0     5
  ST3GAL6 WILD-TYPE                        38   717
D133V8, multiclass
                                  clus
vv                                 ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          5               717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D133V9, binary
                   cls
clus                  0   1
  ST3GAL6 MUTATED     0   5
  ST3GAL6 WILD-TYPE  35 661
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST3GAL6 MUTATED      0    5
  ST3GAL6 WILD-TYPE   35  661
                        clus
vv                       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               5               661
[1] 2 2
[1] FALSE

Clustering(134) Variable = HTT MUTATION ANALYSIS
D134V1, survival
               sevent
clus2             0   1
  HTT MUTATED     5   0
  HTT WILD-TYPE 448 334
  HTT MUTATED HTT WILD-TYPE 
            5           782 
  HTT MUTATED HTT WILD-TYPE 
            0           334 
$`HTT MUTATED`
TCGA-DU-6392 TCGA-HT-7875 TCGA-HW-7495 TCGA-P5-A5EX TCGA-R8-A6MK 
      211.17         0.33        35.44         7.99        88.83 

$`HTT WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        0.23         6.71         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       11.08        12.99        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  HTT MUTATED HTT WILD-TYPE 
         0.33          0.03 
  HTT MUTATED HTT WILD-TYPE 
       211.17        182.33 
  HTT MUTATED HTT WILD-TYPE 
       35.440        16.815 
[1] "0.3 - 211.2 (35.4)" "0.0 - 182.3 (16.8)"
[1] "hr="     "9700000"
D134V2, continuous
D134V3, binary
               cls
clus              0   1
  HTT MUTATED     0   5
  HTT WILD-TYPE 278 507
[1] "tbl2"
               cls
clus            [,1] [,2]
  HTT MUTATED      0    5
  HTT WILD-TYPE  278  507
                        clus
vv                       HTT MUTATED HTT WILD-TYPE
  BRAIN                            0           278
  CENTRAL NERVOUS SYSTEM           5           507
[1] 2 2
[1] FALSE
D134V4, binary
               cls
clus              0   1
  HTT MUTATED     3   2
  HTT WILD-TYPE 326 459
[1] "tbl2"
               cls
clus            [,1] [,2]
  HTT MUTATED      3    2
  HTT WILD-TYPE  326  459
        clus
vv       HTT MUTATED HTT WILD-TYPE
  FEMALE           3           326
  MALE             2           459
[1] 2 2
[1] FALSE
D134V5, binary
               cls
clus              0   1
  HTT MUTATED     2   3
  HTT WILD-TYPE 230 505
[1] "tbl2"
               cls
clus            [,1] [,2]
  HTT MUTATED      2    3
  HTT WILD-TYPE  230  505
     clus
vv    HTT MUTATED HTT WILD-TYPE
  NO            2           230
  YES           3           505
[1] 2 2
[1] FALSE
D134V6, continuous
[1] "Remove cluster labels:" "HTT MUTATED"           
clus
  HTT MUTATED HTT WILD-TYPE 
            2           508 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0126    TCGA-06-0128 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0129    TCGA-06-0130    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0151    TCGA-06-0154    TCGA-06-0155    TCGA-06-0157    TCGA-06-0158 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0165    TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0174 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0192 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0195    TCGA-06-0214    TCGA-06-0216    TCGA-06-0238    TCGA-06-0240 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0646    TCGA-06-0648    TCGA-06-0686 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0743    TCGA-06-0744    TCGA-06-0745    TCGA-06-0747    TCGA-06-0750 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0875    TCGA-06-0876    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1806    TCGA-06-2557    TCGA-06-2558 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5858    TCGA-06-5859 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6695    TCGA-06-6697 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-06-6700    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616    TCGA-12-0618 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821    TCGA-12-1597 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653    TCGA-12-5299 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-12-5301    TCGA-14-0740    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-4157    TCGA-15-0742 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5954    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134    TCGA-26-5139 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-2502 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204    TCGA-28-5207 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-28-5208    TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-28-5216    TCGA-28-5219    TCGA-28-5220    TCGA-32-1982    TCGA-32-1986 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-32-2615    TCGA-32-2638    TCGA-32-4213    TCGA-41-2571    TCGA-41-2573 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-41-2575    TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-74-6584    TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-76-4929    TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-76-6191    TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-76-6285    TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-76-6662    TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-CS-4938 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-CS-4941    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5395    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6290    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6667 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-CS-6668    TCGA-CS-6669    TCGA-DB-5274    TCGA-DB-A4XE    TCGA-DB-A64L 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DB-A64Q    TCGA-DB-A64R    TCGA-DB-A64S    TCGA-DB-A64U    TCGA-DB-A64V 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DB-A64W    TCGA-DB-A64X    TCGA-DB-A75L    TCGA-DB-A75O    TCGA-DH-5140 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144    TCGA-DH-A66B    TCGA-DH-A66D 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DH-A66F    TCGA-DH-A66G    TCGA-DH-A7UR    TCGA-DH-A7UU    TCGA-DH-A7UV 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853    TCGA-DU-5854    TCGA-DU-5855 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5874    TCGA-DU-6396    TCGA-DU-6401 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6407    TCGA-DU-6408 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-6410    TCGA-DU-7009    TCGA-DU-7011    TCGA-DU-7013    TCGA-DU-7015 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-7018    TCGA-DU-7019    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7299 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-7300    TCGA-DU-7301    TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-7309    TCGA-DU-8158    TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-8165    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP    TCGA-DU-A5TR 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-A5TS    TCGA-DU-A5TU    TCGA-DU-A5TW    TCGA-DU-A6S2    TCGA-DU-A6S6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-A6S7    TCGA-DU-A6S8    TCGA-DU-A76R    TCGA-DU-A7T6    TCGA-DU-A7T8 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-DU-A7TA    TCGA-DU-A7TB    TCGA-DU-A7TC    TCGA-DU-A7TD    TCGA-DU-A7TG 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305    TCGA-E1-5307 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322    TCGA-E1-A7YE 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-E1-A7YH    TCGA-E1-A7YI    TCGA-E1-A7YJ    TCGA-E1-A7YK    TCGA-E1-A7YL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-E1-A7YM    TCGA-E1-A7YN    TCGA-E1-A7YO    TCGA-E1-A7YQ    TCGA-E1-A7YS 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-E1-A7YV    TCGA-E1-A7YW    TCGA-E1-A7YY    TCGA-E1-A7Z2    TCGA-E1-A7Z4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-E1-A7Z6    TCGA-FG-5963    TCGA-FG-5965    TCGA-FG-6688    TCGA-FG-6689 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7636    TCGA-FG-7638    TCGA-FG-8181 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187    TCGA-FG-8188    TCGA-FG-8189 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-FG-A4MT    TCGA-FG-A4MW    TCGA-FG-A4MX    TCGA-FG-A60J    TCGA-FG-A60L 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-FG-A6J1    TCGA-FG-A6J3    TCGA-FG-A711    TCGA-FG-A713    TCGA-FG-A87Q 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-7468    TCGA-HT-7470    TCGA-HT-7475    TCGA-HT-7477    TCGA-HT-7481 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-7482    TCGA-HT-7485    TCGA-HT-7607    TCGA-HT-7609    TCGA-HT-7611 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-7686    TCGA-HT-7689    TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-7854    TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7858    TCGA-HT-7884 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-8013    TCGA-HT-8105    TCGA-HT-8113    TCGA-HT-8564    TCGA-HT-A4DV 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5RA    TCGA-HT-A5RC    TCGA-HT-A615    TCGA-HT-A617 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-HT-A618    TCGA-HT-A61A    TCGA-HT-A61B    TCGA-HT-A61C    TCGA-HT-A74L 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-IK-7675    TCGA-KT-A74X    TCGA-KT-A7W1    TCGA-P5-A5EU    TCGA-P5-A5EV 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-P5-A5EW    TCGA-P5-A5F0    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-P5-A731    TCGA-QH-A65R    TCGA-QH-A65S    TCGA-QH-A65V    TCGA-QH-A65X 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-QH-A65Z    TCGA-QH-A6CS    TCGA-QH-A6CU    TCGA-QH-A6CV    TCGA-QH-A6CW 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-QH-A6CX    TCGA-QH-A6CY    TCGA-QH-A6CZ    TCGA-QH-A6X3    TCGA-QH-A6X4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-QH-A6X5    TCGA-QH-A6X8    TCGA-QH-A6X9    TCGA-QH-A6XA    TCGA-QH-A6XC 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-QH-A86X    TCGA-QH-A870    TCGA-RY-A83Y    TCGA-RY-A840    TCGA-RY-A845 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-RY-A847    TCGA-S9-A6TS    TCGA-S9-A6TU    TCGA-S9-A6TV    TCGA-S9-A6TW 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A6TX    TCGA-S9-A6TY    TCGA-S9-A6TZ    TCGA-S9-A6U0    TCGA-S9-A6U1 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A6U2    TCGA-S9-A6U5    TCGA-S9-A6U6    TCGA-S9-A6U8    TCGA-S9-A6UA 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A6UB    TCGA-S9-A6WD    TCGA-S9-A6WE    TCGA-S9-A6WG    TCGA-S9-A6WH 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A6WI    TCGA-S9-A6WL    TCGA-S9-A6WM    TCGA-S9-A6WN    TCGA-S9-A6WO 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A6WP    TCGA-S9-A6WQ    TCGA-S9-A7IQ    TCGA-S9-A7IS    TCGA-S9-A7IX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A7IY    TCGA-S9-A7IZ    TCGA-S9-A7J0    TCGA-S9-A7J1    TCGA-S9-A7J2 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A7J3    TCGA-S9-A7QW    TCGA-S9-A7QX    TCGA-S9-A7QY    TCGA-S9-A7QZ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A7R1    TCGA-S9-A7R2    TCGA-S9-A7R3    TCGA-S9-A7R4    TCGA-S9-A7R7 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S9-A7R8    TCGA-S9-A89V    TCGA-S9-A89Z    TCGA-TM-A7C3    TCGA-TM-A7C4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-TM-A7C5    TCGA-TM-A7CA    TCGA-TM-A7CF    TCGA-TM-A84B    TCGA-TM-A84C 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-TM-A84F    TCGA-TM-A84G    TCGA-TM-A84H    TCGA-TM-A84I    TCGA-TM-A84J 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-TM-A84L    TCGA-TM-A84M    TCGA-TM-A84O    TCGA-TM-A84Q    TCGA-TM-A84R 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-TM-A84S    TCGA-TM-A84T    TCGA-TQ-A7RG    TCGA-TQ-A7RK    TCGA-TQ-A7RM 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-TQ-A7RN    TCGA-TQ-A7RO    TCGA-TQ-A7RP    TCGA-TQ-A7RQ    TCGA-TQ-A7RR 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-TQ-A7RS    TCGA-TQ-A7RU    TCGA-TQ-A7RV    TCGA-TQ-A7RW    TCGA-TQ-A8XE 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-VM-A8C8    TCGA-VM-A8CA    TCGA-VM-A8CD    TCGA-VM-A8CE    TCGA-VM-A8CF 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-VM-A8CH    TCGA-WY-A858    TCGA-WY-A859 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  HTT MUTATED             1                             0                0
  HTT WILD-TYPE         191                             9              130
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  HTT MUTATED                   4                   0
  HTT WILD-TYPE               186                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  HTT MUTATED                                 0
  HTT WILD-TYPE                             265
D134V7, multiclass
                                 clus
vv                                HTT MUTATED HTT WILD-TYPE
  ASTROCYTOMA                               1           191
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          0           130
  OLIGODENDROGLIOMA                         4           186
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           0           265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  HTT MUTATED                                  0     0
  HTT WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  HTT MUTATED                           0     5
  HTT WILD-TYPE                        38   717
D134V8, multiclass
                                  clus
vv                                 HTT MUTATED HTT WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  0            38
  WHITE                                      5           717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D134V9, binary
               cls
clus              0   1
  HTT MUTATED     0   5
  HTT WILD-TYPE  35 661
[1] "tbl2"
               cls
clus            [,1] [,2]
  HTT MUTATED      0    5
  HTT WILD-TYPE   35  661
                        clus
vv                       HTT MUTATED HTT WILD-TYPE
  HISPANIC OR LATINO               0            35
  NOT HISPANIC OR LATINO           5           661
[1] 2 2
[1] FALSE

Clustering(135) Variable = AK7 MUTATION ANALYSIS
D135V1, survival
               sevent
clus2             0   1
  AK7 MUTATED     3   5
  AK7 WILD-TYPE 450 329
  AK7 MUTATED AK7 WILD-TYPE 
            8           779 
  AK7 MUTATED AK7 WILD-TYPE 
            5           329 
$`AK7 MUTATED`
TCGA-06-0749 TCGA-19-2620 TCGA-19-5951 TCGA-28-1747 TCGA-CS-6188 TCGA-DU-7006 
        2.70         4.87         8.02         2.53        23.84        11.47 
TCGA-HT-7686 TCGA-HT-8564 
       42.74        15.72 

$`AK7 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        7.86         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        5.06         9.67         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 
        7.00         4.50         6.64        17.19        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       14.40        15.78         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6290 TCGA-CS-6665 
       21.01         9.96         6.38        17.69        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7007 
       16.83        94.52       114.08         7.96         2.40        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        13.74        28.27         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  AK7 MUTATED AK7 WILD-TYPE 
         2.53          0.03 
  AK7 MUTATED AK7 WILD-TYPE 
        42.74        211.17 
  AK7 MUTATED AK7 WILD-TYPE 
        9.745        16.930 
[1] "2.5 - 42.7 (9.7)"   "0.0 - 211.2 (16.9)"
[1] "hr=" "2.5"
D135V2, continuous
D135V3, binary
               cls
clus              0   1
  AK7 MUTATED     4   4
  AK7 WILD-TYPE 274 508
[1] "tbl2"
               cls
clus            [,1] [,2]
  AK7 MUTATED      4    4
  AK7 WILD-TYPE  274  508
                        clus
vv                       AK7 MUTATED AK7 WILD-TYPE
  BRAIN                            4           274
  CENTRAL NERVOUS SYSTEM           4           508
[1] 2 2
[1] FALSE
D135V4, binary
               cls
clus              0   1
  AK7 MUTATED     3   5
  AK7 WILD-TYPE 326 456
[1] "tbl2"
               cls
clus            [,1] [,2]
  AK7 MUTATED      3    5
  AK7 WILD-TYPE  326  456
        clus
vv       AK7 MUTATED AK7 WILD-TYPE
  FEMALE           3           326
  MALE             5           456
[1] 2 2
[1] FALSE
D135V5, binary
               cls
clus              0   1
  AK7 MUTATED     1   7
  AK7 WILD-TYPE 231 501
[1] "tbl2"
               cls
clus            [,1] [,2]
  AK7 MUTATED      1    7
  AK7 WILD-TYPE  231  501
     clus
vv    AK7 MUTATED AK7 WILD-TYPE
  NO            1           231
  YES           7           501
[1] 2 2
[1] FALSE
D135V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  AK7 MUTATED             4                             0                0
  AK7 WILD-TYPE         188                             9              130
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  AK7 MUTATED                   0                   0
  AK7 WILD-TYPE               190                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  AK7 MUTATED                                 4
  AK7 WILD-TYPE                             261
D135V7, multiclass
                                 clus
vv                                AK7 MUTATED AK7 WILD-TYPE
  ASTROCYTOMA                               4           188
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          0           130
  OLIGODENDROGLIOMA                         0           190
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           4           261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AK7 MUTATED                                  0     0
  AK7 WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  AK7 MUTATED                           1     7
  AK7 WILD-TYPE                        37   715
D135V8, multiclass
                                  clus
vv                                 AK7 MUTATED AK7 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  1            37
  WHITE                                      7           715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D135V9, binary
               cls
clus              0   1
  AK7 MUTATED     1   7
  AK7 WILD-TYPE  34 659
[1] "tbl2"
               cls
clus            [,1] [,2]
  AK7 MUTATED      1    7
  AK7 WILD-TYPE   34  659
                        clus
vv                       AK7 MUTATED AK7 WILD-TYPE
  HISPANIC OR LATINO               1            34
  NOT HISPANIC OR LATINO           7           659
[1] 2 2
[1] FALSE

Clustering(136) Variable = ZZZ3 MUTATION ANALYSIS
D136V1, survival
                sevent
clus2              0   1
  ZZZ3 MUTATED     4   0
  ZZZ3 WILD-TYPE 449 334
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
             4            783 
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
             0            334 
$`ZZZ3 MUTATED`
TCGA-06-2563 TCGA-DU-6392 TCGA-FG-6690 TCGA-TQ-A7RF 
       30.64       211.17        42.54        21.37 

$`ZZZ3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       12.56         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6691 
       25.48        52.21        36.82        18.77        14.93        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       18.61        14.93        23.80        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
         21.37           0.03 
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
        211.17         182.33 
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
         36.59          16.73 
[1] "21.4 - 211.2 (36.6)" "0.0 - 182.3 (16.7)" 
[1] "hr="     "9600000"
D136V2, continuous
D136V3, binary
                cls
clus               0   1
  ZZZ3 MUTATED     1   3
  ZZZ3 WILD-TYPE 277 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZZZ3 MUTATED      1    3
  ZZZ3 WILD-TYPE  277  509
                        clus
vv                       ZZZ3 MUTATED ZZZ3 WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D136V4, binary
                cls
clus               0   1
  ZZZ3 MUTATED     3   1
  ZZZ3 WILD-TYPE 326 460
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZZZ3 MUTATED      3    1
  ZZZ3 WILD-TYPE  326  460
        clus
vv       ZZZ3 MUTATED ZZZ3 WILD-TYPE
  FEMALE            3            326
  MALE              1            460
[1] 2 2
[1] FALSE
D136V5, binary
                cls
clus               0   1
  ZZZ3 MUTATED     0   4
  ZZZ3 WILD-TYPE 232 504
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZZZ3 MUTATED      0    4
  ZZZ3 WILD-TYPE  232  504
     clus
vv    ZZZ3 MUTATED ZZZ3 WILD-TYPE
  NO             0            232
  YES            4            504
[1] 2 2
[1] FALSE
D136V6, continuous
[1] "Remove cluster labels:" "ZZZ3 MUTATED"          
clus
  ZZZ3 MUTATED ZZZ3 WILD-TYPE 
             2            508 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0167     TCGA-06-0168     TCGA-06-0169 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0185 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0188     TCGA-06-0192     TCGA-06-0195     TCGA-06-0214 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0238     TCGA-06-0240     TCGA-06-0241 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0646     TCGA-06-0648     TCGA-06-0686 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0878 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2564     TCGA-06-2565 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6695     TCGA-06-6697     TCGA-06-6700 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-08-0386     TCGA-12-0615     TCGA-12-0616     TCGA-12-0618 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0688     TCGA-12-0692     TCGA-12-0821 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-12-1597     TCGA-12-3649     TCGA-12-3650     TCGA-12-3652 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-14-0786     TCGA-14-0787     TCGA-14-0789     TCGA-14-0790 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-14-0813     TCGA-14-0817     TCGA-14-0862     TCGA-14-0871 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-14-1456 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-19-1390     TCGA-19-1790 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2631 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5954     TCGA-19-5958     TCGA-19-5959 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-19-5960     TCGA-26-1442     TCGA-26-5132     TCGA-26-5133 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-26-5134     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5219     TCGA-28-5220     TCGA-32-1982 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-32-1986     TCGA-32-2615     TCGA-32-2638     TCGA-32-4213 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-41-2571     TCGA-41-2573     TCGA-41-2575     TCGA-74-6573 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932     TCGA-76-4934 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-76-4935     TCGA-76-6191     TCGA-76-6192     TCGA-76-6193 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-76-6280     TCGA-76-6282     TCGA-76-6285     TCGA-76-6286 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6661     TCGA-76-6662 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-76-6663     TCGA-76-6664     TCGA-81-5910     TCGA-CS-4938 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395     TCGA-CS-5396 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6290 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667     TCGA-CS-6668 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE     TCGA-DB-A64L 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S     TCGA-DB-A64U 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X     TCGA-DB-A75L 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D     TCGA-DH-A66F 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU     TCGA-DH-A7UV 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853     TCGA-DU-5854 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871     TCGA-DU-5874 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403     TCGA-DU-6404 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013     TCGA-DU-7015 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294     TCGA-DU-7298 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8163     TCGA-DU-8165 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A6S2 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8     TCGA-DU-A76R 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA     TCGA-DU-A7TB 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG     TCGA-E1-5302 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-A7YE     TCGA-E1-A7YH     TCGA-E1-A7YI     TCGA-E1-A7YJ 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-A7YK     TCGA-E1-A7YL     TCGA-E1-A7YM     TCGA-E1-A7YN 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-A7YO     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z4 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-FG-5963     TCGA-FG-5965     TCGA-FG-6688 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6691     TCGA-FG-7636     TCGA-FG-7638 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-A4MT     TCGA-FG-A4MW 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-FG-A60L     TCGA-FG-A6J1 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-FG-A6J3     TCGA-FG-A711     TCGA-FG-A713     TCGA-FG-A87Q 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7470     TCGA-HT-7475     TCGA-HT-7477 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7485     TCGA-HT-7607 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7611     TCGA-HT-7686     TCGA-HT-7689 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7854 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7858     TCGA-HT-7875 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-7884     TCGA-HT-8013     TCGA-HT-8105     TCGA-HT-8113 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R7     TCGA-HT-A5RA 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-A5RC     TCGA-HT-A615     TCGA-HT-A617     TCGA-HT-A618 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A61C     TCGA-HT-A74L 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1     TCGA-P5-A5EU 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5F0 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6     TCGA-P5-A731 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V     TCGA-QH-A65X 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU     TCGA-QH-A6CV 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY     TCGA-QH-A6CZ 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5     TCGA-QH-A6X8 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC     TCGA-QH-A86X 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840     TCGA-RY-A845 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY     TCGA-S9-A6TZ 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2     TCGA-S9-A6U5 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA     TCGA-S9-A6UB 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG     TCGA-S9-A6WH 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM     TCGA-S9-A6WN 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ     TCGA-S9-A7IQ 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7J3 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY     TCGA-S9-A7QZ 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3     TCGA-S9-A7R4 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V     TCGA-S9-A89Z 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5     TCGA-TM-A7CA 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C     TCGA-TM-A84F 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I     TCGA-TM-A84J 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O     TCGA-TM-A84Q 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T     TCGA-TQ-A7RG 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN     TCGA-TQ-A7RO 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD     TCGA-VM-A8CE 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
    TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858     TCGA-WY-A859 
"ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" "ZZZ3 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZZZ3 MUTATED             1                             0                0
  ZZZ3 WILD-TYPE         191                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZZZ3 MUTATED                   2                   0
  ZZZ3 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  ZZZ3 MUTATED                                 1
  ZZZ3 WILD-TYPE                             264
D136V7, multiclass
                                 clus
vv                                ZZZ3 MUTATED ZZZ3 WILD-TYPE
  ASTROCYTOMA                                1            191
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZZZ3 MUTATED                                  0     0
  ZZZ3 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  ZZZ3 MUTATED                           0     4
  ZZZ3 WILD-TYPE                        38   718
D136V8, multiclass
                                  clus
vv                                 ZZZ3 MUTATED ZZZ3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       4            718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D136V9, binary
                cls
clus               0   1
  ZZZ3 MUTATED     0   4
  ZZZ3 WILD-TYPE  35 662
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZZZ3 MUTATED      0    4
  ZZZ3 WILD-TYPE   35  662
                        clus
vv                       ZZZ3 MUTATED ZZZ3 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            4            662
[1] 2 2
[1] FALSE

Clustering(137) Variable = CDA MUTATION ANALYSIS
D137V1, survival
               sevent
clus2             0   1
  CDA MUTATED     2   1
  CDA WILD-TYPE 451 333
  CDA MUTATED CDA WILD-TYPE 
            3           784 
  CDA MUTATED CDA WILD-TYPE 
            1           333 
$`CDA MUTATED`
TCGA-19-1790 TCGA-32-4213 TCGA-TQ-A7RV 
        5.06        19.86        61.41 

$`CDA WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
       25.38         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RW 
       31.20        30.05        26.14        25.87        33.93        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  CDA MUTATED CDA WILD-TYPE 
         5.06          0.03 
  CDA MUTATED CDA WILD-TYPE 
        61.41        211.17 
  CDA MUTATED CDA WILD-TYPE 
       19.860        16.815 
[1] "5.1 - 61.4 (19.9)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.4"
D137V2, continuous
D137V3, binary
               cls
clus              0   1
  CDA MUTATED     2   1
  CDA WILD-TYPE 276 511
[1] "tbl2"
               cls
clus            [,1] [,2]
  CDA MUTATED      2    1
  CDA WILD-TYPE  276  511
                        clus
vv                       CDA MUTATED CDA WILD-TYPE
  BRAIN                            2           276
  CENTRAL NERVOUS SYSTEM           1           511
[1] 2 2
[1] FALSE
D137V4, binary
               cls
clus              0   1
  CDA MUTATED     1   2
  CDA WILD-TYPE 328 459
[1] "tbl2"
               cls
clus            [,1] [,2]
  CDA MUTATED      1    2
  CDA WILD-TYPE  328  459
        clus
vv       CDA MUTATED CDA WILD-TYPE
  FEMALE           1           328
  MALE             2           459
[1] 2 2
[1] FALSE
D137V5, binary
               cls
clus              0   1
  CDA MUTATED     1   2
  CDA WILD-TYPE 231 506
[1] "tbl2"
               cls
clus            [,1] [,2]
  CDA MUTATED      1    2
  CDA WILD-TYPE  231  506
     clus
vv    CDA MUTATED CDA WILD-TYPE
  NO            1           231
  YES           2           506
[1] 2 2
[1] FALSE
D137V6, continuous
               vv
clus            ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CDA MUTATED             1                             0                0
  CDA WILD-TYPE         191                             9              130
               vv
clus            OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CDA MUTATED                   0                   0
  CDA WILD-TYPE               190                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  CDA MUTATED                                 2
  CDA WILD-TYPE                             263
D137V7, multiclass
                                 clus
vv                                CDA MUTATED CDA WILD-TYPE
  ASTROCYTOMA                               1           191
  GLIOBLASTOMA MULTIFORME (GBM)             0             9
  OLIGOASTROCYTOMA                          0           130
  OLIGODENDROGLIOMA                         0           190
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM           2           263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CDA MUTATED                                  0     0
  CDA WILD-TYPE                                1    13
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  CDA MUTATED                           0     3
  CDA WILD-TYPE                        38   719
D137V8, multiclass
                                  clus
vv                                 CDA MUTATED CDA WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            13
  BLACK OR AFRICAN AMERICAN                  0            38
  WHITE                                      3           719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D137V9, binary
               cls
clus              0   1
  CDA MUTATED     1   2
  CDA WILD-TYPE  34 664
[1] "tbl2"
               cls
clus            [,1] [,2]
  CDA MUTATED      1    2
  CDA WILD-TYPE   34  664
                        clus
vv                       CDA MUTATED CDA WILD-TYPE
  HISPANIC OR LATINO               1            34
  NOT HISPANIC OR LATINO           2           664
[1] 2 2
[1] FALSE

Clustering(138) Variable = NPTX1 MUTATION ANALYSIS
D138V1, survival
                 sevent
clus2               0   1
  NPTX1 MUTATED     2   3
  NPTX1 WILD-TYPE 451 331
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              5             782 
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              3             331 
$`NPTX1 MUTATED`
TCGA-06-0650 TCGA-32-4213 TCGA-DU-6392 TCGA-DU-6394 TCGA-TM-A7C3 
       23.57        19.86       211.17        22.42        54.77 

$`NPTX1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.80         2.10        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       17.49        15.16        52.11        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       20.48        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  NPTX1 MUTATED NPTX1 WILD-TYPE 
          19.86            0.03 
  NPTX1 MUTATED NPTX1 WILD-TYPE 
         211.17          182.33 
  NPTX1 MUTATED NPTX1 WILD-TYPE 
         23.570          16.715 
[1] "19.9 - 211.2 (23.6)" "0.0 - 182.3 (16.7)" 
[1] "hr=" "1.6"
D138V2, continuous
D138V3, binary
                 cls
clus                0   1
  NPTX1 MUTATED     2   3
  NPTX1 WILD-TYPE 276 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPTX1 MUTATED      2    3
  NPTX1 WILD-TYPE  276  509
                        clus
vv                       NPTX1 MUTATED NPTX1 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D138V4, binary
                 cls
clus                0   1
  NPTX1 MUTATED     4   1
  NPTX1 WILD-TYPE 325 460
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPTX1 MUTATED      4    1
  NPTX1 WILD-TYPE  325  460
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  FEMALE             4             325
  MALE               1             460
[1] 2 2
[1] FALSE
D138V5, binary
                 cls
clus                0   1
  NPTX1 MUTATED     1   4
  NPTX1 WILD-TYPE 231 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPTX1 MUTATED      1    4
  NPTX1 WILD-TYPE  231  504
     clus
vv    NPTX1 MUTATED NPTX1 WILD-TYPE
  NO              1             231
  YES             4             504
[1] 2 2
[1] FALSE
D138V6, continuous
[1] "Remove cluster labels:" "NPTX1 MUTATED"         
clus
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5139      TCGA-26-6173 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-2502      TCGA-28-2509 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5219      TCGA-28-5220 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-2615      TCGA-32-2638 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2573      TCGA-41-2575      TCGA-74-6573 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6285      TCGA-76-6286 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6661      TCGA-76-6662 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-76-6663      TCGA-76-6664      TCGA-81-5910      TCGA-CS-4938 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395      TCGA-CS-5396 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6290 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667      TCGA-CS-6668 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-A7YO      TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-E1-A7Z6      TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-FG-7638      TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-FG-A6J1      TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-FG-A87Q      TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-7689      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-8113      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-A5RA      TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-A618      TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-HT-A74L      TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-P5-A5F0      TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-P5-A731      TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-RY-A845      TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A6TZ      TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A6UB      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A7IZ      TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A7J3      TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A7R4      TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-S9-A89Z      TCGA-TM-A7C4      TCGA-TM-A7C5      TCGA-TM-A7CA 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C      TCGA-TM-A84F 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" "NPTX1 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NPTX1 MUTATED             2                             0                0
  NPTX1 WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NPTX1 MUTATED                   1                   0
  NPTX1 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  NPTX1 MUTATED                                 2
  NPTX1 WILD-TYPE                             263
D138V7, multiclass
                                 clus
vv                                NPTX1 MUTATED NPTX1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NPTX1 MUTATED                                  0     0
  NPTX1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  NPTX1 MUTATED                           0     5
  NPTX1 WILD-TYPE                        38   717
D138V8, multiclass
                                  clus
vv                                 NPTX1 MUTATED NPTX1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        5             717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D138V9, binary
                 cls
clus                0   1
  NPTX1 MUTATED     0   5
  NPTX1 WILD-TYPE  35 661
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPTX1 MUTATED      0    5
  NPTX1 WILD-TYPE   35  661
                        clus
vv                       NPTX1 MUTATED NPTX1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             5             661
[1] 2 2
[1] FALSE

Clustering(139) Variable = C10ORF46 MUTATION ANALYSIS
D139V1, survival
                    sevent
clus2                  0   1
  C10ORF46 MUTATED     1   2
  C10ORF46 WILD-TYPE 452 332
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
                 3                784 
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
                 2                332 
$`C10ORF46 MUTATED`
TCGA-06-0129 TCGA-CS-5395 TCGA-DU-6392 
       33.67        21.01       211.17 

$`C10ORF46 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       22.72        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       64.64        40.18         0.10         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
             21.01               0.03 
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
            211.17             182.33 
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
            33.670             16.765 
[1] "21.0 - 211.2 (33.7)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "1.9"
D139V2, continuous
D139V3, binary
                    cls
clus                   0   1
  C10ORF46 MUTATED     1   2
  C10ORF46 WILD-TYPE 277 510
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF46 MUTATED      1    2
  C10ORF46 WILD-TYPE  277  510
                        clus
vv                       C10ORF46 MUTATED C10ORF46 WILD-TYPE
  BRAIN                                 1                277
  CENTRAL NERVOUS SYSTEM                2                510
[1] 2 2
[1] FALSE
D139V4, binary
                    cls
clus                   0   1
  C10ORF46 MUTATED     1   2
  C10ORF46 WILD-TYPE 328 459
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF46 MUTATED      1    2
  C10ORF46 WILD-TYPE  328  459
        clus
vv       C10ORF46 MUTATED C10ORF46 WILD-TYPE
  FEMALE                1                328
  MALE                  2                459
[1] 2 2
[1] FALSE
D139V5, binary
                    cls
clus                   0   1
  C10ORF46 MUTATED     0   3
  C10ORF46 WILD-TYPE 232 505
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF46 MUTATED      0    3
  C10ORF46 WILD-TYPE  232  505
     clus
vv    C10ORF46 MUTATED C10ORF46 WILD-TYPE
  NO                 0                232
  YES                3                505
[1] 2 2
[1] FALSE
D139V6, continuous
[1] "Remove cluster labels:" "C10ORF46 MUTATED"      
clus
  C10ORF46 MUTATED C10ORF46 WILD-TYPE 
                 2                508 
        TCGA-02-0003         TCGA-02-0033         TCGA-02-0047 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-02-0055         TCGA-02-2470         TCGA-02-2483 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0126 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0128         TCGA-06-0130         TCGA-06-0139 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0151 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0165         TCGA-06-0167 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0174 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0184         TCGA-06-0185 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0192         TCGA-06-0195 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0214         TCGA-06-0216         TCGA-06-0238 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0240         TCGA-06-0241         TCGA-06-0644 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0646         TCGA-06-0648         TCGA-06-0686 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0750         TCGA-06-0875 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0876         TCGA-06-0878         TCGA-06-0879 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-1806         TCGA-06-2557         TCGA-06-2558 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5417         TCGA-06-5418 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6695 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6700         TCGA-08-0386 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0688         TCGA-12-0692 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-12-0821         TCGA-12-1597         TCGA-12-3649 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-12-3650         TCGA-12-3652         TCGA-12-3653 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0740 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0813         TCGA-14-0817 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-14-0862         TCGA-14-0871         TCGA-14-1043 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1450         TCGA-14-1456 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-14-2554         TCGA-14-4157         TCGA-15-0742 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-19-1390         TCGA-19-1790         TCGA-19-2619 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2623         TCGA-19-2631 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-19-4068         TCGA-19-5947         TCGA-19-5950 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5954 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5139         TCGA-26-6173 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-26-6174         TCGA-27-1830         TCGA-27-1831 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1833         TCGA-27-1834 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-27-1835         TCGA-27-1836         TCGA-27-1837 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-27-1838         TCGA-27-2518         TCGA-27-2519 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-27-2521         TCGA-27-2523         TCGA-27-2524 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-27-2526         TCGA-27-2527         TCGA-27-2528 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2509         TCGA-28-2513 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5211         TCGA-28-5213 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-28-5214         TCGA-28-5215         TCGA-28-5216 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-32-1982 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-32-1986         TCGA-32-2615         TCGA-32-2638 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-32-4213         TCGA-41-2571         TCGA-41-2573 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-41-2575         TCGA-74-6573         TCGA-74-6575 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6584 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4927 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-4932         TCGA-76-4934         TCGA-76-4935 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-CS-4938 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-CS-4941         TCGA-CS-4942         TCGA-CS-4943 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-CS-4944         TCGA-CS-5390         TCGA-CS-5393 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-CS-5396         TCGA-CS-5397         TCGA-CS-6186 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-CS-6188         TCGA-CS-6290         TCGA-CS-6665 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-CS-6666         TCGA-CS-6667         TCGA-CS-6668 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-CS-6669         TCGA-DB-5274         TCGA-DB-A4XE 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DB-A64L         TCGA-DB-A64Q         TCGA-DB-A64R 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DB-A64S         TCGA-DB-A64U         TCGA-DB-A64V 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DB-A64W         TCGA-DB-A64X         TCGA-DB-A75L 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DB-A75O         TCGA-DH-5140         TCGA-DH-5142 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DH-5143         TCGA-DH-5144         TCGA-DH-A66B 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DH-A66D         TCGA-DH-A66F         TCGA-DH-A66G 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DH-A7UR         TCGA-DH-A7UU         TCGA-DH-A7UV 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-5851         TCGA-DU-5852         TCGA-DU-5853 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-5854         TCGA-DU-5855         TCGA-DU-5870 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-5871         TCGA-DU-5874         TCGA-DU-6396 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-6401         TCGA-DU-6403         TCGA-DU-6404 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-6405         TCGA-DU-6407         TCGA-DU-6408 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-6410         TCGA-DU-7009         TCGA-DU-7011 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-7013         TCGA-DU-7015         TCGA-DU-7018 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-7019         TCGA-DU-7294         TCGA-DU-7298 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-7299         TCGA-DU-7300         TCGA-DU-7301 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-7302         TCGA-DU-7304         TCGA-DU-7306 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-7309         TCGA-DU-8158         TCGA-DU-8161 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-8162         TCGA-DU-8163         TCGA-DU-8165 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-8167         TCGA-DU-8168         TCGA-DU-A5TP 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-A5TR         TCGA-DU-A5TS         TCGA-DU-A5TU 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-A5TW         TCGA-DU-A6S2         TCGA-DU-A6S6 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-A6S7         TCGA-DU-A6S8         TCGA-DU-A76R 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-A7T6         TCGA-DU-A7T8         TCGA-DU-A7TA 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-A7TB         TCGA-DU-A7TC         TCGA-DU-A7TD 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-DU-A7TG         TCGA-E1-5302         TCGA-E1-5303 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-5304         TCGA-E1-5305         TCGA-E1-5307 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-5311         TCGA-E1-5318         TCGA-E1-5319 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-5322         TCGA-E1-A7YE         TCGA-E1-A7YH 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-A7YI         TCGA-E1-A7YJ         TCGA-E1-A7YK 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-A7YL         TCGA-E1-A7YM         TCGA-E1-A7YN 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-A7YO         TCGA-E1-A7YQ         TCGA-E1-A7YS 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-A7YV         TCGA-E1-A7YW         TCGA-E1-A7YY 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-E1-A7Z2         TCGA-E1-A7Z4         TCGA-E1-A7Z6 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-5963         TCGA-FG-5965         TCGA-FG-6688 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-6689         TCGA-FG-6690         TCGA-FG-6691 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-7636         TCGA-FG-7638         TCGA-FG-8181 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-8185         TCGA-FG-8186         TCGA-FG-8187 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-8188         TCGA-FG-8189         TCGA-FG-A4MT 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-A4MW         TCGA-FG-A4MX         TCGA-FG-A60J 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-A60L         TCGA-FG-A6J1         TCGA-FG-A6J3 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-FG-A711         TCGA-FG-A713         TCGA-FG-A87Q 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7468         TCGA-HT-7470         TCGA-HT-7475 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7477         TCGA-HT-7481         TCGA-HT-7482 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7485         TCGA-HT-7607         TCGA-HT-7609 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7611         TCGA-HT-7686         TCGA-HT-7689 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7692         TCGA-HT-7693         TCGA-HT-7694 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7854         TCGA-HT-7855         TCGA-HT-7856 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-7858         TCGA-HT-7875         TCGA-HT-7884 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-8013         TCGA-HT-8105         TCGA-HT-8113 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-8564         TCGA-HT-A4DV         TCGA-HT-A5R7 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-A5RA         TCGA-HT-A5RC         TCGA-HT-A615 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-A617         TCGA-HT-A618         TCGA-HT-A61A 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-HT-A61B         TCGA-HT-A61C         TCGA-HT-A74L 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-IK-7675         TCGA-KT-A74X         TCGA-KT-A7W1 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-P5-A5EU         TCGA-P5-A5EV         TCGA-P5-A5EW 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-P5-A5EX         TCGA-P5-A5F0         TCGA-P5-A5F2 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-P5-A5F4         TCGA-P5-A5F6         TCGA-P5-A731 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A65R         TCGA-QH-A65S         TCGA-QH-A65V 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A65X         TCGA-QH-A65Z         TCGA-QH-A6CS 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A6CU         TCGA-QH-A6CV         TCGA-QH-A6CW 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A6CX         TCGA-QH-A6CY         TCGA-QH-A6CZ 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A6X3         TCGA-QH-A6X4         TCGA-QH-A6X5 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A6X8         TCGA-QH-A6X9         TCGA-QH-A6XA 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-QH-A6XC         TCGA-QH-A86X         TCGA-QH-A870 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-RY-A83Y         TCGA-RY-A840         TCGA-RY-A845 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-RY-A847         TCGA-S9-A6TS         TCGA-S9-A6TU 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6TV         TCGA-S9-A6TW         TCGA-S9-A6TX 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6TY         TCGA-S9-A6TZ         TCGA-S9-A6U0 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6U1         TCGA-S9-A6U2         TCGA-S9-A6U5 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6U6         TCGA-S9-A6U8         TCGA-S9-A6UA 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6UB         TCGA-S9-A6WD         TCGA-S9-A6WE 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6WG         TCGA-S9-A6WH         TCGA-S9-A6WI 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6WL         TCGA-S9-A6WM         TCGA-S9-A6WN 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A6WO         TCGA-S9-A6WP         TCGA-S9-A6WQ 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7IQ         TCGA-S9-A7IS         TCGA-S9-A7IX 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7IY         TCGA-S9-A7IZ         TCGA-S9-A7J0 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7J1         TCGA-S9-A7J2         TCGA-S9-A7J3 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7QW         TCGA-S9-A7QX         TCGA-S9-A7QY 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7QZ         TCGA-S9-A7R1         TCGA-S9-A7R2 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7R3         TCGA-S9-A7R4         TCGA-S9-A7R7 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-S9-A7R8         TCGA-S9-A89V         TCGA-S9-A89Z 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A7C3         TCGA-TM-A7C4         TCGA-TM-A7C5 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A7CA         TCGA-TM-A7CF         TCGA-TM-A84B 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A84C         TCGA-TM-A84F         TCGA-TM-A84G 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A84H         TCGA-TM-A84I         TCGA-TM-A84J 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A84L         TCGA-TM-A84M         TCGA-TM-A84O 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A84Q         TCGA-TM-A84R         TCGA-TM-A84S 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TM-A84T         TCGA-TQ-A7RG         TCGA-TQ-A7RK 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TQ-A7RM         TCGA-TQ-A7RN         TCGA-TQ-A7RO 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TQ-A7RP         TCGA-TQ-A7RQ         TCGA-TQ-A7RR 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TQ-A7RS         TCGA-TQ-A7RU         TCGA-TQ-A7RV 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-TQ-A7RW         TCGA-TQ-A8XE         TCGA-VM-A8C8 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-VM-A8CA         TCGA-VM-A8CD         TCGA-VM-A8CE 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-VM-A8CF         TCGA-VM-A8CH         TCGA-WY-A858 
"C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" "C10ORF46 WILD-TYPE" 
        TCGA-WY-A859 
"C10ORF46 WILD-TYPE" 
                    vv
clus                 ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  C10ORF46 MUTATED             1                             0                0
  C10ORF46 WILD-TYPE         191                             9              130
                    vv
clus                 OLIGODENDROGLIOMA TREATED PRIMARY GBM
  C10ORF46 MUTATED                   1                   0
  C10ORF46 WILD-TYPE               189                   4
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  C10ORF46 MUTATED                                 1
  C10ORF46 WILD-TYPE                             264
D139V7, multiclass
                                 clus
vv                                C10ORF46 MUTATED C10ORF46 WILD-TYPE
  ASTROCYTOMA                                    1                191
  GLIOBLASTOMA MULTIFORME (GBM)                  0                  9
  OLIGOASTROCYTOMA                               0                130
  OLIGODENDROGLIOMA                              1                189
  TREATED PRIMARY GBM                            0                  4
  UNTREATED PRIMARY (DE NOVO) GBM                1                264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  C10ORF46 MUTATED                                  0     1
  C10ORF46 WILD-TYPE                                1    12
                    vv
clus                 BLACK OR AFRICAN AMERICAN WHITE
  C10ORF46 MUTATED                           1     1
  C10ORF46 WILD-TYPE                        37   721
D139V8, multiclass
                                  clus
vv                                 C10ORF46 MUTATED C10ORF46 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                0                  1
  ASIAN                                           1                 12
  BLACK OR AFRICAN AMERICAN                       1                 37
  WHITE                                           1                721
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D139V9, binary
                    cls
clus                   0   1
  C10ORF46 MUTATED     0   2
  C10ORF46 WILD-TYPE  35 664
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF46 MUTATED      0    2
  C10ORF46 WILD-TYPE   35  664
                        clus
vv                       C10ORF46 MUTATED C10ORF46 WILD-TYPE
  HISPANIC OR LATINO                    0                 35
  NOT HISPANIC OR LATINO                2                664
[1] 2 2
[1] FALSE

Clustering(140) Variable = CHGB MUTATION ANALYSIS
D140V1, survival
                sevent
clus2              0   1
  CHGB MUTATED     5   3
  CHGB WILD-TYPE 448 331
  CHGB MUTATED CHGB WILD-TYPE 
             8            779 
  CHGB MUTATED CHGB WILD-TYPE 
             3            331 
$`CHGB MUTATED`
TCGA-06-0184 TCGA-06-0878 TCGA-06-6699 TCGA-19-5959 TCGA-DU-6392 TCGA-FG-8191 
       69.90         7.17         1.55        16.80       211.17        32.61 
TCGA-HT-7480 TCGA-S9-A7R8 
       75.19        31.59 

$`CHGB WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
       12.85         4.77         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
       12.10         1.78        14.07        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
        6.38        40.34        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       98.63        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  CHGB MUTATED CHGB WILD-TYPE 
          1.55           0.03 
  CHGB MUTATED CHGB WILD-TYPE 
        211.17         182.33 
  CHGB MUTATED CHGB WILD-TYPE 
         32.10          16.73 
[1] "1.6 - 211.2 (32.1)" "0.0 - 182.3 (16.7)"
[1] "hr=" "2.2"
D140V2, continuous
D140V3, binary
                cls
clus               0   1
  CHGB MUTATED     4   4
  CHGB WILD-TYPE 274 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHGB MUTATED      4    4
  CHGB WILD-TYPE  274  508
                        clus
vv                       CHGB MUTATED CHGB WILD-TYPE
  BRAIN                             4            274
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D140V4, binary
                cls
clus               0   1
  CHGB MUTATED     4   4
  CHGB WILD-TYPE 325 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHGB MUTATED      4    4
  CHGB WILD-TYPE  325  457
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  FEMALE            4            325
  MALE              4            457
[1] 2 2
[1] FALSE
D140V5, binary
                cls
clus               0   1
  CHGB MUTATED     0   8
  CHGB WILD-TYPE 232 500
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHGB MUTATED      0    8
  CHGB WILD-TYPE  232  500
     clus
vv    CHGB MUTATED CHGB WILD-TYPE
  NO             0            232
  YES            8            500
[1] 2 2
[1] FALSE
D140V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CHGB MUTATED             2                             0                0
  CHGB WILD-TYPE         190                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CHGB MUTATED                   2                   0
  CHGB WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  CHGB MUTATED                                 4
  CHGB WILD-TYPE                             261
D140V7, multiclass
                                 clus
vv                                CHGB MUTATED CHGB WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CHGB MUTATED                                  0     0
  CHGB WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CHGB MUTATED                           0     8
  CHGB WILD-TYPE                        38   714
D140V8, multiclass
                                  clus
vv                                 CHGB MUTATED CHGB WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D140V9, binary
                cls
clus               0   1
  CHGB MUTATED     0   8
  CHGB WILD-TYPE  35 658
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHGB MUTATED      0    8
  CHGB WILD-TYPE   35  658
                        clus
vv                       CHGB MUTATED CHGB WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            8            658
[1] 2 2
[1] FALSE

Clustering(141) Variable = MTMR12 MUTATION ANALYSIS
D141V1, survival
                  sevent
clus2                0   1
  MTMR12 MUTATED     1   3
  MTMR12 WILD-TYPE 452 331
  MTMR12 MUTATED MTMR12 WILD-TYPE 
               4              783 
  MTMR12 MUTATED MTMR12 WILD-TYPE 
               3              331 
$`MTMR12 MUTATED`
TCGA-08-0386 TCGA-76-4925 TCGA-DU-6392 TCGA-HT-A5RC 
       18.02         4.80       211.17         5.33 

$`MTMR12 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
        4.96        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
        0.07        27.35         0.10         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  MTMR12 MUTATED MTMR12 WILD-TYPE 
            4.80             0.03 
  MTMR12 MUTATED MTMR12 WILD-TYPE 
          211.17           182.33 
  MTMR12 MUTATED MTMR12 WILD-TYPE 
          11.675           16.830 
[1] "4.8 - 211.2 (11.7)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.1"
D141V2, continuous
D141V3, binary
                  cls
clus                 0   1
  MTMR12 MUTATED     2   2
  MTMR12 WILD-TYPE 276 510
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTMR12 MUTATED      2    2
  MTMR12 WILD-TYPE  276  510
                        clus
vv                       MTMR12 MUTATED MTMR12 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              2              510
[1] 2 2
[1] FALSE
D141V4, binary
                  cls
clus                 0   1
  MTMR12 MUTATED     2   2
  MTMR12 WILD-TYPE 327 459
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTMR12 MUTATED      2    2
  MTMR12 WILD-TYPE  327  459
        clus
vv       MTMR12 MUTATED MTMR12 WILD-TYPE
  FEMALE              2              327
  MALE                2              459
[1] 2 2
[1] FALSE
D141V5, binary
                  cls
clus                 0   1
  MTMR12 MUTATED     0   4
  MTMR12 WILD-TYPE 232 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTMR12 MUTATED      0    4
  MTMR12 WILD-TYPE  232  504
     clus
vv    MTMR12 MUTATED MTMR12 WILD-TYPE
  NO               0              232
  YES              4              504
[1] 2 2
[1] FALSE
D141V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MTMR12 MUTATED             2                             0                0
  MTMR12 WILD-TYPE         190                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MTMR12 MUTATED                   0                   0
  MTMR12 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  MTMR12 MUTATED                                 2
  MTMR12 WILD-TYPE                             263
D141V7, multiclass
                                 clus
vv                                MTMR12 MUTATED MTMR12 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MTMR12 MUTATED                                  0     0
  MTMR12 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  MTMR12 MUTATED                           0     4
  MTMR12 WILD-TYPE                        38   718
D141V8, multiclass
                                  clus
vv                                 MTMR12 MUTATED MTMR12 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D141V9, binary
                  cls
clus                 0   1
  MTMR12 MUTATED     0   4
  MTMR12 WILD-TYPE  35 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTMR12 MUTATED      0    4
  MTMR12 WILD-TYPE   35  662
                        clus
vv                       MTMR12 MUTATED MTMR12 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(142) Variable = CD1D MUTATION ANALYSIS
D142V1, survival
                sevent
clus2              0   1
  CD1D MUTATED     1   3
  CD1D WILD-TYPE 452 331
  CD1D MUTATED CD1D WILD-TYPE 
             4            783 
  CD1D MUTATED CD1D WILD-TYPE 
             3            331 
$`CD1D MUTATED`
TCGA-06-0184 TCGA-06-6697 TCGA-19-5959 TCGA-76-6285 
       69.90        12.85        16.80         8.35 

$`CD1D WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
        8.32         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 
        4.73        12.10         1.78        14.07        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  CD1D MUTATED CD1D WILD-TYPE 
          8.35           0.03 
  CD1D MUTATED CD1D WILD-TYPE 
         69.90         211.17 
  CD1D MUTATED CD1D WILD-TYPE 
        14.825         16.830 
[1] "8.3 - 69.9 (14.8)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.7"
D142V2, continuous
D142V3, binary
                cls
clus               0   1
  CD1D MUTATED     4   0
  CD1D WILD-TYPE 274 512
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1D MUTATED      4    0
  CD1D WILD-TYPE  274  512
                        clus
vv                       CD1D MUTATED CD1D WILD-TYPE
  BRAIN                             4            274
  CENTRAL NERVOUS SYSTEM            0            512
[1] 2 2
[1] FALSE
D142V4, binary
                cls
clus               0   1
  CD1D MUTATED     2   2
  CD1D WILD-TYPE 327 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1D MUTATED      2    2
  CD1D WILD-TYPE  327  459
        clus
vv       CD1D MUTATED CD1D WILD-TYPE
  FEMALE            2            327
  MALE              2            459
[1] 2 2
[1] FALSE
D142V5, binary
                cls
clus               0   1
  CD1D MUTATED     1   3
  CD1D WILD-TYPE 231 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1D MUTATED      1    3
  CD1D WILD-TYPE  231  505
     clus
vv    CD1D MUTATED CD1D WILD-TYPE
  NO             1            231
  YES            3            505
[1] 2 2
[1] FALSE
D142V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CD1D MUTATED             0                             0                0
  CD1D WILD-TYPE         192                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CD1D MUTATED                   0                   0
  CD1D WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  CD1D MUTATED                                 4
  CD1D WILD-TYPE                             261
D142V7, multiclass
                                 clus
vv                                CD1D MUTATED CD1D WILD-TYPE
  ASTROCYTOMA                                0            192
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CD1D MUTATED                                  0     0
  CD1D WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CD1D MUTATED                           0     4
  CD1D WILD-TYPE                        38   718
D142V8, multiclass
                                  clus
vv                                 CD1D MUTATED CD1D WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       4            718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D142V9, binary
                cls
clus               0   1
  CD1D MUTATED     0   3
  CD1D WILD-TYPE  35 663
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1D MUTATED      0    3
  CD1D WILD-TYPE   35  663
                        clus
vv                       CD1D MUTATED CD1D WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            3            663
[1] 2 2
[1] FALSE

Clustering(143) Variable = GABRA6 MUTATION ANALYSIS
D143V1, survival
                  sevent
clus2                0   1
  GABRA6 MUTATED     5  10
  GABRA6 WILD-TYPE 448 324
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              15              772 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              10              324 
$`GABRA6 MUTATED`
TCGA-02-2486 TCGA-06-5411 TCGA-06-5414 TCGA-06-6390 TCGA-19-2620 TCGA-27-1835 
       20.32         8.35         8.98         5.39         4.87        21.30 
TCGA-27-2526 TCGA-32-4210 TCGA-74-6575 TCGA-76-4931 TCGA-76-6286 TCGA-DU-6392 
        2.86         3.72        20.91         9.17        20.98       211.17 
TCGA-DU-7007 TCGA-DU-7309 TCGA-HT-A4DS 
       62.96         2.76         0.23 

$`GABRA6 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       15.45         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5415 TCGA-06-5417 
       11.74         3.55         4.54         8.81         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2623 
        4.31        29.03        25.38         5.06         9.67         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
       16.08         7.59        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 
       22.78        25.18        21.14        20.32        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        3.45         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
       17.59         3.09         3.65        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7008 
       94.52       114.08         7.96         2.40        11.47       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       13.74        28.27        15.72        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  GABRA6 MUTATED GABRA6 WILD-TYPE 
            0.23             0.03 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
          211.17           182.33 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
            8.98            16.88 
[1] "0.2 - 211.2 (9.0)"  "0.0 - 182.3 (16.9)"
[1] "hr=" "1.7"
D143V2, continuous
D143V3, binary
                  cls
clus                 0   1
  GABRA6 MUTATED    11   4
  GABRA6 WILD-TYPE 267 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA6 MUTATED     11    4
  GABRA6 WILD-TYPE  267  508
                        clus
vv                       GABRA6 MUTATED GABRA6 WILD-TYPE
  BRAIN                              11              267
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D143V4, binary
                  cls
clus                 0   1
  GABRA6 MUTATED     7   8
  GABRA6 WILD-TYPE 322 453
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA6 MUTATED      7    8
  GABRA6 WILD-TYPE  322  453
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  FEMALE              7              322
  MALE                8              453
[1] 2 2
[1] FALSE
D143V5, binary
                  cls
clus                 0   1
  GABRA6 MUTATED     1  11
  GABRA6 WILD-TYPE 231 497
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA6 MUTATED      1   11
  GABRA6 WILD-TYPE  231  497
     clus
vv    GABRA6 MUTATED GABRA6 WILD-TYPE
  NO               1              231
  YES             11              497
[1] 2 2
[1] FALSE
D143V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GABRA6 MUTATED             3                             0                0
  GABRA6 WILD-TYPE         189                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GABRA6 MUTATED                   1                   0
  GABRA6 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  GABRA6 MUTATED                                11
  GABRA6 WILD-TYPE                             254
D143V7, multiclass
                                 clus
vv                                GABRA6 MUTATED GABRA6 WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM             11              254
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GABRA6 MUTATED                                  0     0
  GABRA6 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  GABRA6 MUTATED                           0    14
  GABRA6 WILD-TYPE                        38   708
D143V8, multiclass
                                  clus
vv                                 GABRA6 MUTATED GABRA6 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                        14              708
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D143V9, binary
                  cls
clus                 0   1
  GABRA6 MUTATED     0  13
  GABRA6 WILD-TYPE  35 653
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA6 MUTATED      0   13
  GABRA6 WILD-TYPE   35  653
                        clus
vv                       GABRA6 MUTATED GABRA6 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO             13              653
[1] 2 2
[1] FALSE

Clustering(144) Variable = SLC2A3 MUTATION ANALYSIS
D144V1, survival
                  sevent
clus2                0   1
  SLC2A3 MUTATED     3   2
  SLC2A3 WILD-TYPE 450 332
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
               5              782 
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
               2              332 
$`SLC2A3 MUTATED`
TCGA-02-0003 TCGA-12-0619 TCGA-CS-6188 TCGA-DU-6392 TCGA-F6-A8O3 
        4.73        34.92        23.84       211.17         0.23 

$`SLC2A3 WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        2.83        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0688 TCGA-12-0692 
       18.02        15.35        14.73        12.99        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
       18.97         1.58         7.92         2.33         5.06        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        24.23        40.54        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
       39.48         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX 
       18.61        18.64        14.07        36.13         7.92        26.93 
TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 
       23.51        19.99        20.02         8.19         2.04        20.68 
TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 
       15.06        18.54        28.37        27.16       169.84        10.39 
TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z 
       99.06        30.05        98.63        31.59        18.71        20.48 
TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       54.77        48.33        49.32        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
            0.23             0.03 
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
          211.17           182.33 
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
          23.840           16.815 
[1] "0.2 - 211.2 (23.8)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.9"
D144V2, continuous
D144V3, binary
                  cls
clus                 0   1
  SLC2A3 MUTATED     2   3
  SLC2A3 WILD-TYPE 276 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC2A3 MUTATED      2    3
  SLC2A3 WILD-TYPE  276  509
                        clus
vv                       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D144V4, binary
                  cls
clus                 0   1
  SLC2A3 MUTATED     1   4
  SLC2A3 WILD-TYPE 328 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC2A3 MUTATED      1    4
  SLC2A3 WILD-TYPE  328  457
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  FEMALE              1              328
  MALE                4              457
[1] 2 2
[1] FALSE
D144V5, binary
                  cls
clus                 0   1
  SLC2A3 MUTATED     0   4
  SLC2A3 WILD-TYPE 232 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC2A3 MUTATED      0    4
  SLC2A3 WILD-TYPE  232  504
     clus
vv    SLC2A3 MUTATED SLC2A3 WILD-TYPE
  NO               0              232
  YES              4              504
[1] 2 2
[1] FALSE
D144V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SLC2A3 MUTATED             2                             0                0
  SLC2A3 WILD-TYPE         190                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SLC2A3 MUTATED                   1                   0
  SLC2A3 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  SLC2A3 MUTATED                                 2
  SLC2A3 WILD-TYPE                             263
D144V7, multiclass
                                 clus
vv                                SLC2A3 MUTATED SLC2A3 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SLC2A3 MUTATED                                  0     1
  SLC2A3 WILD-TYPE                                1    12
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  SLC2A3 MUTATED                           0     4
  SLC2A3 WILD-TYPE                        38   718
D144V8, multiclass
                                  clus
vv                                 SLC2A3 MUTATED SLC2A3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         1               12
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D144V9, binary
                  cls
clus                 0   1
  SLC2A3 MUTATED     0   5
  SLC2A3 WILD-TYPE  35 661
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC2A3 MUTATED      0    5
  SLC2A3 WILD-TYPE   35  661
                        clus
vv                       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              5              661
[1] 2 2
[1] FALSE

Clustering(145) Variable = WDR90 MUTATION ANALYSIS
D145V1, survival
                 sevent
clus2               0   1
  WDR90 MUTATED     4   4
  WDR90 WILD-TYPE 449 330
  WDR90 MUTATED WDR90 WILD-TYPE 
              8             779 
  WDR90 MUTATED WDR90 WILD-TYPE 
              4             330 
$`WDR90 MUTATED`
TCGA-06-0157 TCGA-06-0158 TCGA-06-2559 TCGA-06-5408 TCGA-06-6701 TCGA-DU-6392 
        3.19        10.82         4.93        11.74         4.96       211.17 
TCGA-HT-8105 TCGA-QH-A86X 
        6.25        11.08 

$`WDR90 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
       13.94        10.45        10.65         5.85        11.41        19.66 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 
        3.29         4.47         3.22        88.14        69.90        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       44.58        15.42        38.96         7.40         7.63         0.53 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       15.02        24.16         0.72        13.64        13.32        20.42 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       48.69        12.62         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08        12.49        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 
       16.64         4.37         0.43        31.50         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        4.54         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        1.55         4.77        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42        13.78        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        24.23         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       17.19         8.02        18.90         4.73        12.10         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
       14.07        16.80        14.96        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88        18.97         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         5.06        16.60         9.86        24.23        40.54 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        18.08 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8106 
       63.55         0.10        37.87        33.01        12.23         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
        1.91        16.50         5.03        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  WDR90 MUTATED WDR90 WILD-TYPE 
           3.19            0.03 
  WDR90 MUTATED WDR90 WILD-TYPE 
         211.17          182.33 
  WDR90 MUTATED WDR90 WILD-TYPE 
          8.535          16.930 
[1] "3.2 - 211.2 (8.5)"  "0.0 - 182.3 (16.9)"
[1] "hr=" "1.1"
D145V2, continuous
D145V3, binary
                 cls
clus                0   1
  WDR90 MUTATED     5   3
  WDR90 WILD-TYPE 273 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR90 MUTATED      5    3
  WDR90 WILD-TYPE  273  509
                        clus
vv                       WDR90 MUTATED WDR90 WILD-TYPE
  BRAIN                              5             273
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D145V4, binary
                 cls
clus                0   1
  WDR90 MUTATED     3   5
  WDR90 WILD-TYPE 326 456
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR90 MUTATED      3    5
  WDR90 WILD-TYPE  326  456
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  FEMALE             3             326
  MALE               5             456
[1] 2 2
[1] FALSE
D145V5, binary
                 cls
clus                0   1
  WDR90 MUTATED     1   7
  WDR90 WILD-TYPE 231 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR90 MUTATED      1    7
  WDR90 WILD-TYPE  231  501
     clus
vv    WDR90 MUTATED WDR90 WILD-TYPE
  NO              1             231
  YES             7             501
[1] 2 2
[1] FALSE
D145V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  WDR90 MUTATED             1                             0                0
  WDR90 WILD-TYPE         191                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  WDR90 MUTATED                   2                   0
  WDR90 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  WDR90 MUTATED                                 5
  WDR90 WILD-TYPE                             260
D145V7, multiclass
                                 clus
vv                                WDR90 MUTATED WDR90 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             5             260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  WDR90 MUTATED                                  0     0
  WDR90 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  WDR90 MUTATED                           0     8
  WDR90 WILD-TYPE                        38   714
D145V8, multiclass
                                  clus
vv                                 WDR90 MUTATED WDR90 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        8             714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D145V9, binary
                 cls
clus                0   1
  WDR90 MUTATED     0   8
  WDR90 WILD-TYPE  35 658
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR90 MUTATED      0    8
  WDR90 WILD-TYPE   35  658
                        clus
vv                       WDR90 MUTATED WDR90 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             8             658
[1] 2 2
[1] FALSE

Clustering(146) Variable = REXO1 MUTATION ANALYSIS
D146V1, survival
                 sevent
clus2               0   1
  REXO1 MUTATED     3   5
  REXO1 WILD-TYPE 450 329
  REXO1 MUTATED REXO1 WILD-TYPE 
              8             779 
  REXO1 MUTATED REXO1 WILD-TYPE 
              5             329 
$`REXO1 MUTATED`
TCGA-06-0119 TCGA-06-0644 TCGA-14-0862 TCGA-76-6657 TCGA-DB-A4X9 TCGA-DU-6392 
        2.70        12.62         2.89         5.03        46.42       211.17 
TCGA-E1-A7Z2 TCGA-S9-A6WM 
       13.08        19.86 

$`REXO1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       15.45        20.32         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       20.42        48.69         5.75         5.75         9.80         2.10 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57        14.20        26.40        46.88         7.86         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       40.41        16.57        20.78        26.76        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08        12.49         4.93        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 
        2.24        11.24        13.78         1.35         5.39        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
        8.35        20.98         4.83        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB 
       91.13        44.52        36.56        78.28        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
      156.23       154.36        14.99       105.21         6.54         8.84 
TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 
       90.77        30.67        26.30        10.36         7.96        94.32 
TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 
       18.94        44.02        62.01        25.91        60.30        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       84.99        31.10        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  REXO1 MUTATED REXO1 WILD-TYPE 
           2.70            0.03 
  REXO1 MUTATED REXO1 WILD-TYPE 
         211.17          182.33 
  REXO1 MUTATED REXO1 WILD-TYPE 
          12.85           16.83 
[1] "2.7 - 211.2 (12.8)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.1"
D146V2, continuous
D146V3, binary
                 cls
clus                0   1
  REXO1 MUTATED     4   4
  REXO1 WILD-TYPE 274 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REXO1 MUTATED      4    4
  REXO1 WILD-TYPE  274  508
                        clus
vv                       REXO1 MUTATED REXO1 WILD-TYPE
  BRAIN                              4             274
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D146V4, binary
                 cls
clus                0   1
  REXO1 MUTATED     5   3
  REXO1 WILD-TYPE 324 458
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REXO1 MUTATED      5    3
  REXO1 WILD-TYPE  324  458
        clus
vv       REXO1 MUTATED REXO1 WILD-TYPE
  FEMALE             5             324
  MALE               3             458
[1] 2 2
[1] FALSE
D146V5, binary
                 cls
clus                0   1
  REXO1 MUTATED     4   4
  REXO1 WILD-TYPE 228 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REXO1 MUTATED      4    4
  REXO1 WILD-TYPE  228  504
     clus
vv    REXO1 MUTATED REXO1 WILD-TYPE
  NO              4             228
  YES             4             504
[1] 2 2
[1] FALSE
D146V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  REXO1 MUTATED             2                             1                1
  REXO1 WILD-TYPE         190                             8              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  REXO1 MUTATED                   1                   0
  REXO1 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  REXO1 MUTATED                                 3
  REXO1 WILD-TYPE                             262
D146V7, multiclass
                                 clus
vv                                REXO1 MUTATED REXO1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               1               8
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  REXO1 MUTATED                                  0     0
  REXO1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  REXO1 MUTATED                           1     7
  REXO1 WILD-TYPE                        37   715
D146V8, multiclass
                                  clus
vv                                 REXO1 MUTATED REXO1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D146V9, binary
                 cls
clus                0   1
  REXO1 MUTATED     0   7
  REXO1 WILD-TYPE  35 659
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REXO1 MUTATED      0    7
  REXO1 WILD-TYPE   35  659
                        clus
vv                       REXO1 MUTATED REXO1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             7             659
[1] 2 2
[1] FALSE

Clustering(147) Variable = TTC30B MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2                0   1
  TTC30B MUTATED     4   3
  TTC30B WILD-TYPE 449 331
  TTC30B MUTATED TTC30B WILD-TYPE 
               7              780 
  TTC30B MUTATED TTC30B WILD-TYPE 
               3              331 
$`TTC30B MUTATED`
TCGA-06-2558 TCGA-DU-6392 TCGA-DU-A7T8 TCGA-S9-A6TX TCGA-TM-A84L TCGA-TM-A84Q 
       12.49       211.17       139.04        28.14        40.83        25.38 
TCGA-WY-A859 
       39.88 

$`TTC30B WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.61        15.32         1.08         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       21.30        17.98        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.16        24.79        33.24        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.96        43.40        45.80        46.88        37.71        20.81 

  TTC30B MUTATED TTC30B WILD-TYPE 
           12.49             0.03 
  TTC30B MUTATED TTC30B WILD-TYPE 
          211.17           182.33 
  TTC30B MUTATED TTC30B WILD-TYPE 
          39.880           16.715 
[1] "12.5 - 211.2 (39.9)" "0.0 - 182.3 (16.7)" 
[1] "hr=" "2.5"
D147V2, continuous
D147V3, binary
                  cls
clus                 0   1
  TTC30B MUTATED     1   6
  TTC30B WILD-TYPE 277 506
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TTC30B MUTATED      1    6
  TTC30B WILD-TYPE  277  506
                        clus
vv                       TTC30B MUTATED TTC30B WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM              6              506
[1] 2 2
[1] FALSE
D147V4, binary
                  cls
clus                 0   1
  TTC30B MUTATED     3   4
  TTC30B WILD-TYPE 326 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TTC30B MUTATED      3    4
  TTC30B WILD-TYPE  326  457
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  FEMALE              3              326
  MALE                4              457
[1] 2 2
[1] FALSE
D147V5, binary
                  cls
clus                 0   1
  TTC30B MUTATED     2   5
  TTC30B WILD-TYPE 230 503
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TTC30B MUTATED      2    5
  TTC30B WILD-TYPE  230  503
     clus
vv    TTC30B MUTATED TTC30B WILD-TYPE
  NO               2              230
  YES              5              503
[1] 2 2
[1] FALSE
D147V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TTC30B MUTATED             3                             0                2
  TTC30B WILD-TYPE         189                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TTC30B MUTATED                   1                   0
  TTC30B WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  TTC30B MUTATED                                 1
  TTC30B WILD-TYPE                             264
D147V7, multiclass
                                 clus
vv                                TTC30B MUTATED TTC30B WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TTC30B MUTATED                                  0     0
  TTC30B WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  TTC30B MUTATED                           0     7
  TTC30B WILD-TYPE                        38   715
D147V8, multiclass
                                  clus
vv                                 TTC30B MUTATED TTC30B WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         7              715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D147V9, binary
                  cls
clus                 0   1
  TTC30B MUTATED     0   6
  TTC30B WILD-TYPE  35 660
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TTC30B MUTATED      0    6
  TTC30B WILD-TYPE   35  660
                        clus
vv                       TTC30B MUTATED TTC30B WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              6              660
[1] 2 2
[1] FALSE

Clustering(148) Variable = ZMYM2 MUTATION ANALYSIS
D148V1, survival
                 sevent
clus2               0   1
  ZMYM2 MUTATED     6   1
  ZMYM2 WILD-TYPE 447 333
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             780 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              1             333 
$`ZMYM2 MUTATED`
TCGA-DU-6392 TCGA-DU-7013 TCGA-DU-A6S6 TCGA-FG-5962 TCGA-FG-A4MX TCGA-HT-7875 
      211.17         8.84        95.11        47.77        18.71         0.33 
TCGA-TQ-A7RJ 
       40.41 

$`ZMYM2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7015 TCGA-DU-7018 
      154.36        14.99       105.21         6.54        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5963 TCGA-FG-5964 
       32.35        39.48         0.23         0.20        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MY 
       22.52        32.61        38.27        10.72        18.38        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       23.61        37.15         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RK TCGA-TQ-A7RM 
       21.37        19.69        15.98         2.04        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
           0.33            0.03 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
         211.17          182.33 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
         40.410          16.765 
[1] "0.3 - 211.2 (40.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "6.2"
D148V2, continuous
D148V3, binary
                 cls
clus                0   1
  ZMYM2 MUTATED     0   7
  ZMYM2 WILD-TYPE 278 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM2 MUTATED      0    7
  ZMYM2 WILD-TYPE  278  505
                        clus
vv                       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  BRAIN                              0             278
  CENTRAL NERVOUS SYSTEM             7             505
[1] 2 2
[1] FALSE
D148V4, binary
                 cls
clus                0   1
  ZMYM2 MUTATED     3   4
  ZMYM2 WILD-TYPE 326 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM2 MUTATED      3    4
  ZMYM2 WILD-TYPE  326  457
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  FEMALE             3             326
  MALE               4             457
[1] 2 2
[1] FALSE
D148V5, binary
                 cls
clus                0   1
  ZMYM2 MUTATED     1   6
  ZMYM2 WILD-TYPE 231 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM2 MUTATED      1    6
  ZMYM2 WILD-TYPE  231  502
     clus
vv    ZMYM2 MUTATED ZMYM2 WILD-TYPE
  NO              1             231
  YES             6             502
[1] 2 2
[1] FALSE
D148V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZMYM2 MUTATED             3                             0                2
  ZMYM2 WILD-TYPE         189                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZMYM2 MUTATED                   2                   0
  ZMYM2 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  ZMYM2 MUTATED                                 0
  ZMYM2 WILD-TYPE                             265
D148V7, multiclass
                                 clus
vv                                ZMYM2 MUTATED ZMYM2 WILD-TYPE
  ASTROCYTOMA                                 3             189
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             0             265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZMYM2 MUTATED                                  0     0
  ZMYM2 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ZMYM2 MUTATED                           0     7
  ZMYM2 WILD-TYPE                        38   715
D148V8, multiclass
                                  clus
vv                                 ZMYM2 MUTATED ZMYM2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        7             715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D148V9, binary
                 cls
clus                0   1
  ZMYM2 MUTATED     1   6
  ZMYM2 WILD-TYPE  34 660
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM2 MUTATED      1    6
  ZMYM2 WILD-TYPE   34  660
                        clus
vv                       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             6             660
[1] 2 2
[1] FALSE

Clustering(149) Variable = NKPD1 MUTATION ANALYSIS
D149V1, survival
                 sevent
clus2               0   1
  NKPD1 MUTATED     2   1
  NKPD1 WILD-TYPE 451 333
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              3             784 
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              1             333 
$`NKPD1 MUTATED`
TCGA-DU-7010 TCGA-HT-8010 TCGA-S9-A7R4 
       14.99         1.64        30.05 

$`NKPD1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
      182.33        18.94        17.49        15.16       211.17        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.04        11.64       133.74        19.89        16.83 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       94.52       114.08         7.96         2.40        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      156.23       154.36       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       11.28        31.43        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R7 TCGA-S9-A7R8 
       27.16       169.84        10.39        99.06        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  NKPD1 MUTATED NKPD1 WILD-TYPE 
           1.64            0.03 
  NKPD1 MUTATED NKPD1 WILD-TYPE 
          30.05          211.17 
  NKPD1 MUTATED NKPD1 WILD-TYPE 
          14.99           16.83 
[1] "1.6 - 30.1 (15.0)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.1"
D149V2, continuous
D149V3, binary
                 cls
clus                0   1
  NKPD1 MUTATED     0   3
  NKPD1 WILD-TYPE 278 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NKPD1 MUTATED      0    3
  NKPD1 WILD-TYPE  278  509
                        clus
vv                       NKPD1 MUTATED NKPD1 WILD-TYPE
  BRAIN                              0             278
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D149V4, binary
                 cls
clus                0   1
  NKPD1 MUTATED     2   1
  NKPD1 WILD-TYPE 327 460
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NKPD1 MUTATED      2    1
  NKPD1 WILD-TYPE  327  460
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  FEMALE             2             327
  MALE               1             460
[1] 2 2
[1] FALSE
D149V5, binary
                 cls
clus                0   1
  NKPD1 MUTATED     1   2
  NKPD1 WILD-TYPE 231 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NKPD1 MUTATED      1    2
  NKPD1 WILD-TYPE  231  506
     clus
vv    NKPD1 MUTATED NKPD1 WILD-TYPE
  NO              1             231
  YES             2             506
[1] 2 2
[1] FALSE
D149V6, continuous
[1] "Remove cluster labels:" "NKPD1 MUTATED"         
clus
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              1             509 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5139      TCGA-26-6173 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-2502      TCGA-28-2509 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5219      TCGA-28-5220 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-2615      TCGA-32-2638 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-32-4213      TCGA-41-2571      TCGA-41-2573      TCGA-41-2575 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-4938      TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-4944      TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-5396      TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-6290      TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A64L      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A75L      TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DH-A7UV      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5874      TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6410      TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7298      TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-8165      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A6S2      TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A76R      TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A7TB      TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-A7YJ      TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YM 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-A7YN      TCGA-E1-A7YO      TCGA-E1-A7YQ      TCGA-E1-A7YS 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-A7YV      TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-A7Z4      TCGA-E1-A7Z6      TCGA-FG-5963      TCGA-FG-5965 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7638      TCGA-FG-8181      TCGA-FG-8185 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A60J 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-A60L      TCGA-FG-A6J1      TCGA-FG-A6J3      TCGA-FG-A711 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-A713      TCGA-FG-A87Q      TCGA-HT-7468      TCGA-HT-7470 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7477      TCGA-HT-7481      TCGA-HT-7482 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7611 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7689      TCGA-HT-7692      TCGA-HT-7693 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7875      TCGA-HT-7884      TCGA-HT-8013 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8113      TCGA-HT-8564      TCGA-HT-A4DV 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5RA      TCGA-HT-A5RC      TCGA-HT-A615 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-A617      TCGA-HT-A618      TCGA-HT-A61A      TCGA-HT-A61B 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-A61C      TCGA-HT-A74L      TCGA-IK-7675      TCGA-KT-A74X 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-KT-A7W1      TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5EX      TCGA-P5-A5F0      TCGA-P5-A5F2      TCGA-P5-A5F4 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5F6      TCGA-P5-A731      TCGA-QH-A65R      TCGA-QH-A65S 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-QH-A65V      TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-QH-A6CU      TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-QH-A6CY      TCGA-QH-A6CZ      TCGA-QH-A6X3      TCGA-QH-A6X4 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-QH-A6X5      TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-QH-A6XC      TCGA-QH-A86X      TCGA-QH-A870      TCGA-RY-A83Y 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-RY-A840      TCGA-RY-A845      TCGA-RY-A847      TCGA-S9-A6TS 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6TU      TCGA-S9-A6TV      TCGA-S9-A6TW      TCGA-S9-A6TX 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6TY      TCGA-S9-A6TZ      TCGA-S9-A6U0      TCGA-S9-A6U1 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6U2      TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U8 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6UA      TCGA-S9-A6UB      TCGA-S9-A6WD      TCGA-S9-A6WE 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6WG      TCGA-S9-A6WH      TCGA-S9-A6WI      TCGA-S9-A6WL 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6WM      TCGA-S9-A6WN      TCGA-S9-A6WO      TCGA-S9-A6WP 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A6WQ      TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IX 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A7IY      TCGA-S9-A7IZ      TCGA-S9-A7J0      TCGA-S9-A7J1 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A7J2      TCGA-S9-A7J3      TCGA-S9-A7QW      TCGA-S9-A7QX 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A7QY      TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R2 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A7R3      TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-S9-A89Z      TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TM-A7CA      TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TM-A84F      TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TM-A84J      TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TM-A84Q      TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TQ-A7RG      TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TQ-A7RO      TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TQ-A7RS      TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-VM-A8CE      TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-WY-A859 
"NKPD1 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NKPD1 MUTATED             2                             0                0
  NKPD1 WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NKPD1 MUTATED                   1                   0
  NKPD1 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  NKPD1 MUTATED                                 0
  NKPD1 WILD-TYPE                             265
D149V7, multiclass
                                 clus
vv                                NKPD1 MUTATED NKPD1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             0             265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NKPD1 MUTATED                                  0     0
  NKPD1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  NKPD1 MUTATED                           0     3
  NKPD1 WILD-TYPE                        38   719
D149V8, multiclass
                                  clus
vv                                 NKPD1 MUTATED NKPD1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        3             719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D149V9, binary
                 cls
clus                0   1
  NKPD1 MUTATED     1   2
  NKPD1 WILD-TYPE  34 664
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NKPD1 MUTATED      1    2
  NKPD1 WILD-TYPE   34  664
                        clus
vv                       NKPD1 MUTATED NKPD1 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             2             664
[1] 2 2
[1] FALSE

Clustering(150) Variable = ALPK3 MUTATION ANALYSIS
D150V1, survival
                 sevent
clus2               0   1
  ALPK3 MUTATED     2   2
  ALPK3 WILD-TYPE 451 332
  ALPK3 MUTATED ALPK3 WILD-TYPE 
              4             783 
  ALPK3 MUTATED ALPK3 WILD-TYPE 
              2             332 
$`ALPK3 MUTATED`
TCGA-06-0152 TCGA-41-3393 TCGA-DU-6392 TCGA-HT-8564 
       12.33         4.44       211.17        15.72 

$`ALPK3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0154 
        0.20        10.29         2.20         2.33        46.59        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       28.27         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  ALPK3 MUTATED ALPK3 WILD-TYPE 
           4.44            0.03 
  ALPK3 MUTATED ALPK3 WILD-TYPE 
         211.17          182.33 
  ALPK3 MUTATED ALPK3 WILD-TYPE 
         14.025          16.830 
[1] "4.4 - 211.2 (14.0)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.6"
D150V2, continuous
D150V3, binary
                 cls
clus                0   1
  ALPK3 MUTATED     2   2
  ALPK3 WILD-TYPE 276 510
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ALPK3 MUTATED      2    2
  ALPK3 WILD-TYPE  276  510
                        clus
vv                       ALPK3 MUTATED ALPK3 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             2             510
[1] 2 2
[1] FALSE
D150V4, binary
                 cls
clus                0   1
  ALPK3 MUTATED     2   2
  ALPK3 WILD-TYPE 327 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ALPK3 MUTATED      2    2
  ALPK3 WILD-TYPE  327  459
        clus
vv       ALPK3 MUTATED ALPK3 WILD-TYPE
  FEMALE             2             327
  MALE               2             459
[1] 2 2
[1] FALSE
D150V5, binary
                 cls
clus                0   1
  ALPK3 MUTATED     1   3
  ALPK3 WILD-TYPE 231 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ALPK3 MUTATED      1    3
  ALPK3 WILD-TYPE  231  505
     clus
vv    ALPK3 MUTATED ALPK3 WILD-TYPE
  NO              1             231
  YES             3             505
[1] 2 2
[1] FALSE
D150V6, continuous
[1] "Remove cluster labels:" "ALPK3 MUTATED"         
clus
  ALPK3 MUTATED ALPK3 WILD-TYPE 
              1             509 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5132 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-26-5133      TCGA-26-5134      TCGA-26-5139      TCGA-26-6173 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-2502      TCGA-28-2509 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-28-2513      TCGA-28-2514      TCGA-28-5204      TCGA-28-5207 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-28-5208      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5219      TCGA-28-5220 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-32-1982      TCGA-32-1986      TCGA-32-2615      TCGA-32-2638 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-32-4213      TCGA-41-2571      TCGA-41-2573      TCGA-41-2575 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-CS-4938      TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-CS-4944      TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-CS-5396      TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-CS-6290      TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DB-A64L      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DB-A75L      TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DH-A7UV      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-5874      TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-6410      TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-7298      TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-8165      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-A6S2      TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-A76R      TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-DU-A7TB      TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-5322      TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-A7YJ      TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YM 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-A7YN      TCGA-E1-A7YO      TCGA-E1-A7YQ      TCGA-E1-A7YS 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-A7YV      TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-E1-A7Z4      TCGA-E1-A7Z6      TCGA-FG-5963      TCGA-FG-5965 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7638      TCGA-FG-8181      TCGA-FG-8185 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A60J 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-FG-A60L      TCGA-FG-A6J1      TCGA-FG-A6J3      TCGA-FG-A711 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-FG-A713      TCGA-FG-A87Q      TCGA-HT-7468      TCGA-HT-7470 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7477      TCGA-HT-7481      TCGA-HT-7482 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7611 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7689      TCGA-HT-7692      TCGA-HT-7693 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7875      TCGA-HT-7884      TCGA-HT-8013 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8113      TCGA-HT-A4DV      TCGA-HT-A5R7 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-A5RA      TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-A618      TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-HT-A74L      TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-P5-A5F0      TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-P5-A731      TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-RY-A845      TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A6TZ      TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A6UB      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A7IZ      TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A7J3      TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A7R4      TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-S9-A89Z      TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TM-A7CA      TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TM-A84F      TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TM-A84J      TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TM-A84Q      TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TQ-A7RG      TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TQ-A7RO      TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TQ-A7RS      TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-VM-A8CE      TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858 
"ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" "ALPK3 WILD-TYPE" 
     TCGA-WY-A859 
"ALPK3 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ALPK3 MUTATED             2                             0                0
  ALPK3 WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ALPK3 MUTATED                   0                   0
  ALPK3 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  ALPK3 MUTATED                                 2
  ALPK3 WILD-TYPE                             263
D150V7, multiclass
                                 clus
vv                                ALPK3 MUTATED ALPK3 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ALPK3 MUTATED                                  0     0
  ALPK3 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ALPK3 MUTATED                           0     4
  ALPK3 WILD-TYPE                        38   718
D150V8, multiclass
                                  clus
vv                                 ALPK3 MUTATED ALPK3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        4             718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D150V9, binary
                 cls
clus                0   1
  ALPK3 MUTATED     1   3
  ALPK3 WILD-TYPE  34 663
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ALPK3 MUTATED      1    3
  ALPK3 WILD-TYPE   34  663
                        clus
vv                       ALPK3 MUTATED ALPK3 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             3             663
[1] 2 2
[1] FALSE

Clustering(151) Variable = INF2 MUTATION ANALYSIS
D151V1, survival
                sevent
clus2              0   1
  INF2 MUTATED     2   2
  INF2 WILD-TYPE 451 332
  INF2 MUTATED INF2 WILD-TYPE 
             4            783 
  INF2 MUTATED INF2 WILD-TYPE 
             2            332 
$`INF2 MUTATED`
TCGA-06-0237 TCGA-DU-7012 TCGA-HT-7681 TCGA-HT-A61B 
       13.64         6.54        44.68        17.52 

$`INF2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 
        7.63         0.53        15.02        24.16         0.72        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
      154.36        14.99       105.21         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
        0.16        16.24         0.76         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61C 
        1.81        16.14        16.83        21.40         6.38        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  INF2 MUTATED INF2 WILD-TYPE 
          6.54           0.03 
  INF2 MUTATED INF2 WILD-TYPE 
         44.68         211.17 
  INF2 MUTATED INF2 WILD-TYPE 
         15.58          16.83 
[1] "6.5 - 44.7 (15.6)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.3"
D151V2, continuous
D151V3, binary
                cls
clus               0   1
  INF2 MUTATED     1   3
  INF2 WILD-TYPE 277 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  INF2 MUTATED      1    3
  INF2 WILD-TYPE  277  509
                        clus
vv                       INF2 MUTATED INF2 WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D151V4, binary
                cls
clus               0   1
  INF2 MUTATED     3   1
  INF2 WILD-TYPE 326 460
[1] "tbl2"
                cls
clus             [,1] [,2]
  INF2 MUTATED      3    1
  INF2 WILD-TYPE  326  460
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  FEMALE            3            326
  MALE              1            460
[1] 2 2
[1] FALSE
D151V5, binary
                cls
clus               0   1
  INF2 MUTATED     1   3
  INF2 WILD-TYPE 231 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  INF2 MUTATED      1    3
  INF2 WILD-TYPE  231  505
     clus
vv    INF2 MUTATED INF2 WILD-TYPE
  NO             1            231
  YES            3            505
[1] 2 2
[1] FALSE
D151V6, continuous
[1] "Remove cluster labels:" "INF2 MUTATED"          
clus
  INF2 MUTATED INF2 WILD-TYPE 
             1            509 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0126     TCGA-06-0128     TCGA-06-0129     TCGA-06-0130 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0139     TCGA-06-0140     TCGA-06-0141     TCGA-06-0151 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0167     TCGA-06-0168     TCGA-06-0169 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0185 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0188     TCGA-06-0192     TCGA-06-0195     TCGA-06-0214 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0216     TCGA-06-0238     TCGA-06-0240     TCGA-06-0241 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0644     TCGA-06-0646     TCGA-06-0648     TCGA-06-0686 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0743     TCGA-06-0744     TCGA-06-0745     TCGA-06-0747 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0750     TCGA-06-0875     TCGA-06-0876     TCGA-06-0878 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-1806     TCGA-06-2557     TCGA-06-2558     TCGA-06-2559 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-2561     TCGA-06-2562     TCGA-06-2563     TCGA-06-2564 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-2565     TCGA-06-2567     TCGA-06-2569     TCGA-06-2570 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-5408     TCGA-06-5410     TCGA-06-5411     TCGA-06-5412 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-5413     TCGA-06-5414     TCGA-06-5415     TCGA-06-5417 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-5418     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6695     TCGA-06-6697 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-06-6700     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5299     TCGA-12-5301 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-14-0740     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-4157     TCGA-15-0742     TCGA-19-1390 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-19-2631     TCGA-19-4068     TCGA-19-5947     TCGA-19-5950 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-19-5951     TCGA-19-5952     TCGA-19-5954     TCGA-19-5958 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5139     TCGA-26-6173 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-2502     TCGA-28-2509 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-28-2513     TCGA-28-2514     TCGA-28-5204     TCGA-28-5207 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-28-5208     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5219     TCGA-28-5220 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-1986     TCGA-32-2615     TCGA-32-2638 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-32-4213     TCGA-41-2571     TCGA-41-2573     TCGA-41-2575 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-CS-4938     TCGA-CS-4941     TCGA-CS-4942     TCGA-CS-4943 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5395 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-CS-5396     TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-CS-6290     TCGA-CS-6665     TCGA-CS-6666     TCGA-CS-6667 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-CS-6668     TCGA-CS-6669     TCGA-DB-5274     TCGA-DB-A4XE 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DB-A64L     TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DB-A75L     TCGA-DB-A75O     TCGA-DH-5140     TCGA-DH-5142 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7UR     TCGA-DH-A7UU 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DH-A7UV     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-5874     TCGA-DU-6396     TCGA-DU-6401     TCGA-DU-6403 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6407     TCGA-DU-6408 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-6410     TCGA-DU-7009     TCGA-DU-7011     TCGA-DU-7013 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7294 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-7298     TCGA-DU-7299     TCGA-DU-7300     TCGA-DU-7301 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306     TCGA-DU-7309 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162     TCGA-DU-8163 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-8165     TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-A5TR     TCGA-DU-A5TS     TCGA-DU-A5TU     TCGA-DU-A5TW 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-A6S2     TCGA-DU-A6S6     TCGA-DU-A6S7     TCGA-DU-A6S8 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-A76R     TCGA-DU-A7T6     TCGA-DU-A7T8     TCGA-DU-A7TA 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-DU-A7TB     TCGA-DU-A7TC     TCGA-DU-A7TD     TCGA-DU-A7TG 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-5322     TCGA-E1-A7YE     TCGA-E1-A7YH     TCGA-E1-A7YI 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-A7YJ     TCGA-E1-A7YK     TCGA-E1-A7YL     TCGA-E1-A7YM 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-A7YN     TCGA-E1-A7YO     TCGA-E1-A7YQ     TCGA-E1-A7YS 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-A7YV     TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-E1-A7Z4     TCGA-E1-A7Z6     TCGA-FG-5963     TCGA-FG-5965 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FG-6688     TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7638     TCGA-FG-8181     TCGA-FG-8185 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A60J 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FG-A60L     TCGA-FG-A6J1     TCGA-FG-A6J3     TCGA-FG-A711 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FG-A713     TCGA-FG-A87Q     TCGA-HT-7468     TCGA-HT-7470 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-7475     TCGA-HT-7477     TCGA-HT-7481     TCGA-HT-7482 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7607     TCGA-HT-7609     TCGA-HT-7611 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-7686     TCGA-HT-7689     TCGA-HT-7692     TCGA-HT-7693 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-7694     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7875     TCGA-HT-7884     TCGA-HT-8013 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8113     TCGA-HT-8564     TCGA-HT-A4DV 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5RA     TCGA-HT-A5RC     TCGA-HT-A615 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-A617     TCGA-HT-A618     TCGA-HT-A61A     TCGA-HT-A61C 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HT-A74L     TCGA-IK-7675     TCGA-KT-A74X     TCGA-KT-A7W1 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-P5-A731     TCGA-QH-A65R     TCGA-QH-A65S     TCGA-QH-A65V 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS     TCGA-QH-A6CU 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX     TCGA-QH-A6CY 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-QH-A6CZ     TCGA-QH-A6X3     TCGA-QH-A6X4     TCGA-QH-A6X5 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-RY-A83Y     TCGA-RY-A840 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-RY-A845     TCGA-RY-A847     TCGA-S9-A6TS     TCGA-S9-A6TU 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A6TV     TCGA-S9-A6TW     TCGA-S9-A6TX     TCGA-S9-A6TY 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A6TZ     TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U2 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A6U5     TCGA-S9-A6U6     TCGA-S9-A6U8     TCGA-S9-A6UA 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A6UB     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WI     TCGA-S9-A6WL     TCGA-S9-A6WM 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A6WN     TCGA-S9-A6WO     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IX     TCGA-S9-A7IY 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A7IZ     TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A7J3     TCGA-S9-A7QW     TCGA-S9-A7QX     TCGA-S9-A7QY 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R2     TCGA-S9-A7R3 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A7R4     TCGA-S9-A7R7     TCGA-S9-A7R8     TCGA-S9-A89V 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-S9-A89Z     TCGA-TM-A7C3     TCGA-TM-A7C4     TCGA-TM-A7C5 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TM-A7CA     TCGA-TM-A7CF     TCGA-TM-A84B     TCGA-TM-A84C 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TM-A84F     TCGA-TM-A84G     TCGA-TM-A84H     TCGA-TM-A84I 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TM-A84J     TCGA-TM-A84L     TCGA-TM-A84M     TCGA-TM-A84O 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TM-A84Q     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TM-A84T 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RK     TCGA-TQ-A7RM     TCGA-TQ-A7RN 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TQ-A7RO     TCGA-TQ-A7RP     TCGA-TQ-A7RQ     TCGA-TQ-A7RR 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TQ-A7RS     TCGA-TQ-A7RU     TCGA-TQ-A7RV     TCGA-TQ-A7RW 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8CA     TCGA-VM-A8CD 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-VM-A8CE     TCGA-VM-A8CF     TCGA-VM-A8CH     TCGA-WY-A858 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-WY-A859 
"INF2 WILD-TYPE" 
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  INF2 MUTATED             2                             0                1
  INF2 WILD-TYPE         190                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  INF2 MUTATED                   0                   0
  INF2 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  INF2 MUTATED                                 1
  INF2 WILD-TYPE                             264
D151V7, multiclass
                                 clus
vv                                INF2 MUTATED INF2 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  INF2 MUTATED                                  0     0
  INF2 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  INF2 MUTATED                           1     3
  INF2 WILD-TYPE                        37   719
D151V8, multiclass
                                  clus
vv                                 INF2 MUTATED INF2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   1             37
  WHITE                                       3            719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D151V9, binary
                cls
clus               0   1
  INF2 MUTATED     0   4
  INF2 WILD-TYPE  35 662
[1] "tbl2"
                cls
clus             [,1] [,2]
  INF2 MUTATED      0    4
  INF2 WILD-TYPE   35  662
                        clus
vv                       INF2 MUTATED INF2 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            4            662
[1] 2 2
[1] FALSE

Clustering(152) Variable = SGOL2 MUTATION ANALYSIS
D152V1, survival
                 sevent
clus2               0   1
  SGOL2 MUTATED     4   4
  SGOL2 WILD-TYPE 449 330
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              8             779 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              4             330 
$`SGOL2 MUTATED`
TCGA-06-0168 TCGA-14-0789 TCGA-14-3476 TCGA-DU-6392 TCGA-FG-A711 TCGA-QH-A6CW 
       19.66        11.24         0.39       211.17        48.69        13.61 
TCGA-R8-A6ML TCGA-TM-A84T 
       94.03        23.80 

$`SGOL2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       11.41         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       23.05         2.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.63         7.17        17.49         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A713 TCGA-FG-A87N 
       22.26        28.54        10.78        36.66        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       88.83        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TQ-A7RF TCGA-TQ-A7RG 
       33.24        25.38        18.61        14.93        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  SGOL2 MUTATED SGOL2 WILD-TYPE 
           0.39            0.03 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
         211.17          182.33 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
          21.73           16.80 
[1] "0.4 - 211.2 (21.7)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.5"
D152V2, continuous
D152V3, binary
                 cls
clus                0   1
  SGOL2 MUTATED     3   5
  SGOL2 WILD-TYPE 275 507
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGOL2 MUTATED      3    5
  SGOL2 WILD-TYPE  275  507
                        clus
vv                       SGOL2 MUTATED SGOL2 WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             5             507
[1] 2 2
[1] FALSE
D152V4, binary
                 cls
clus                0   1
  SGOL2 MUTATED     3   5
  SGOL2 WILD-TYPE 326 456
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGOL2 MUTATED      3    5
  SGOL2 WILD-TYPE  326  456
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  FEMALE             3             326
  MALE               5             456
[1] 2 2
[1] FALSE
D152V5, binary
                 cls
clus                0   1
  SGOL2 MUTATED     4   4
  SGOL2 WILD-TYPE 228 504
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGOL2 MUTATED      4    4
  SGOL2 WILD-TYPE  228  504
     clus
vv    SGOL2 MUTATED SGOL2 WILD-TYPE
  NO              4             228
  YES             4             504
[1] 2 2
[1] FALSE
D152V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SGOL2 MUTATED             1                             0                2
  SGOL2 WILD-TYPE         191                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SGOL2 MUTATED                   2                   0
  SGOL2 WILD-TYPE               188                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  SGOL2 MUTATED                                 3
  SGOL2 WILD-TYPE                             262
D152V7, multiclass
                                 clus
vv                                SGOL2 MUTATED SGOL2 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           2             188
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SGOL2 MUTATED                                  0     0
  SGOL2 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  SGOL2 MUTATED                           0     8
  SGOL2 WILD-TYPE                        38   714
D152V8, multiclass
                                  clus
vv                                 SGOL2 MUTATED SGOL2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        8             714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D152V9, binary
                 cls
clus                0   1
  SGOL2 MUTATED     1   5
  SGOL2 WILD-TYPE  34 661
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGOL2 MUTATED      1    5
  SGOL2 WILD-TYPE   34  661
                        clus
vv                       SGOL2 MUTATED SGOL2 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             5             661
[1] 2 2
[1] FALSE

Clustering(153) Variable = GPR132 MUTATION ANALYSIS
D153V1, survival
                  sevent
clus2                0   1
  GPR132 MUTATED     4   2
  GPR132 WILD-TYPE 449 332
  GPR132 MUTATED GPR132 WILD-TYPE 
               6              781 
  GPR132 MUTATED GPR132 WILD-TYPE 
               2              332 
$`GPR132 MUTATED`
TCGA-02-0047 TCGA-32-1977 TCGA-DH-5143 TCGA-DU-6392 TCGA-DU-A7T8 TCGA-S9-A7IQ 
       14.73         0.10        46.06       211.17       139.04        36.13 

$`GPR132 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
       15.39        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       19.96        31.82        63.88         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
       15.16        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 
        0.10         0.10         2.96        17.52         6.90        14.53 
TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       39.48        19.23        39.09         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
       23.61        37.15         0.33         0.13         3.68         5.33 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 
       35.47         3.72        11.28        31.43         1.64        16.24 
TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
        9.40        63.55         0.10        37.87        33.01        12.23 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
        6.25         0.10         0.46         2.50         5.56        13.78 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
        0.23        29.59        34.19        13.74        28.27        15.72 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.61        18.64        14.07         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  GPR132 MUTATED GPR132 WILD-TYPE 
            0.10             0.03 
  GPR132 MUTATED GPR132 WILD-TYPE 
          211.17           182.33 
  GPR132 MUTATED GPR132 WILD-TYPE 
          41.095           16.800 
[1] "0.1 - 211.2 (41.1)" "0.0 - 182.3 (16.8)"
[1] "hr=" "3.2"
D153V2, continuous
D153V3, binary
                  cls
clus                 0   1
  GPR132 MUTATED     2   4
  GPR132 WILD-TYPE 276 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR132 MUTATED      2    4
  GPR132 WILD-TYPE  276  508
                        clus
vv                       GPR132 MUTATED GPR132 WILD-TYPE
  BRAIN                               2              276
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D153V4, binary
                  cls
clus                 0   1
  GPR132 MUTATED     3   3
  GPR132 WILD-TYPE 326 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR132 MUTATED      3    3
  GPR132 WILD-TYPE  326  458
        clus
vv       GPR132 MUTATED GPR132 WILD-TYPE
  FEMALE              3              326
  MALE                3              458
[1] 2 2
[1] FALSE
D153V5, binary
                  cls
clus                 0   1
  GPR132 MUTATED     1   4
  GPR132 WILD-TYPE 231 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR132 MUTATED      1    4
  GPR132 WILD-TYPE  231  504
     clus
vv    GPR132 MUTATED GPR132 WILD-TYPE
  NO               1              231
  YES              4              504
[1] 2 2
[1] FALSE
D153V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GPR132 MUTATED             1                             0                3
  GPR132 WILD-TYPE         191                             9              127
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GPR132 MUTATED                   0                   0
  GPR132 WILD-TYPE               190                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  GPR132 MUTATED                                 2
  GPR132 WILD-TYPE                             263
D153V7, multiclass
                                 clus
vv                                GPR132 MUTATED GPR132 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             3              127
  OLIGODENDROGLIOMA                            0              190
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              2              263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GPR132 MUTATED                                  0     0
  GPR132 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  GPR132 MUTATED                           0     6
  GPR132 WILD-TYPE                        38   716
D153V8, multiclass
                                  clus
vv                                 GPR132 MUTATED GPR132 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         6              716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D153V9, binary
                  cls
clus                 0   1
  GPR132 MUTATED     1   5
  GPR132 WILD-TYPE  34 661
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR132 MUTATED      1    5
  GPR132 WILD-TYPE   34  661
                        clus
vv                       GPR132 MUTATED GPR132 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              5              661
[1] 2 2
[1] FALSE

Clustering(154) Variable = TP63 MUTATION ANALYSIS
D154V1, survival
                sevent
clus2              0   1
  TP63 MUTATED     5   4
  TP63 WILD-TYPE 448 330
  TP63 MUTATED TP63 WILD-TYPE 
             9            778 
  TP63 MUTATED TP63 WILD-TYPE 
             4            330 
$`TP63 MUTATED`
TCGA-06-0744 TCGA-06-5858 TCGA-19-5960 TCGA-32-1977 TCGA-74-6575 TCGA-81-5910 
       46.88         6.15        14.96         0.10        20.91         1.61 
TCGA-DH-5140 TCGA-HT-A61B TCGA-P5-A5EZ 
       19.96        17.52         2.30 

$`TP63 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 
        9.80         2.10        23.57        14.20        26.40         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 
        8.55         5.10         2.73         3.75         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.35        14.73        12.99        34.92        26.66         3.65 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
       10.62        22.19        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 
        4.73        12.10         1.78        14.07        16.80        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1979 
        5.16        22.68        10.49         5.42        15.39        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 
       11.84         0.20        15.12        12.46         3.45         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
        6.38        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5F0 
       14.40         0.23         6.71         7.99         2.37         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  TP63 MUTATED TP63 WILD-TYPE 
          0.10           0.03 
  TP63 MUTATED TP63 WILD-TYPE 
         46.88         211.17 
  TP63 MUTATED TP63 WILD-TYPE 
         14.96          16.83 
[1] "0.1 - 46.9 (15.0)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D154V2, continuous
D154V3, binary
                cls
clus               0   1
  TP63 MUTATED     6   3
  TP63 WILD-TYPE 272 509
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP63 MUTATED      6    3
  TP63 WILD-TYPE  272  509
                        clus
vv                       TP63 MUTATED TP63 WILD-TYPE
  BRAIN                             6            272
  CENTRAL NERVOUS SYSTEM            3            509
[1] 2 2
[1] FALSE
D154V4, binary
                cls
clus               0   1
  TP63 MUTATED     4   5
  TP63 WILD-TYPE 325 456
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP63 MUTATED      4    5
  TP63 WILD-TYPE  325  456
        clus
vv       TP63 MUTATED TP63 WILD-TYPE
  FEMALE            4            325
  MALE              5            456
[1] 2 2
[1] FALSE
D154V5, binary
                cls
clus               0   1
  TP63 MUTATED     1   6
  TP63 WILD-TYPE 231 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP63 MUTATED      1    6
  TP63 WILD-TYPE  231  502
     clus
vv    TP63 MUTATED TP63 WILD-TYPE
  NO             1            231
  YES            6            502
[1] 2 2
[1] FALSE
D154V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TP63 MUTATED             2                             0                1
  TP63 WILD-TYPE         190                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TP63 MUTATED                   0                   0
  TP63 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TP63 MUTATED                                 6
  TP63 WILD-TYPE                             259
D154V7, multiclass
                                 clus
vv                                TP63 MUTATED TP63 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            6            259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TP63 MUTATED                                  0     0
  TP63 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TP63 MUTATED                           0     8
  TP63 WILD-TYPE                        38   714
D154V8, multiclass
                                  clus
vv                                 TP63 MUTATED TP63 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D154V9, binary
                cls
clus               0   1
  TP63 MUTATED     1   6
  TP63 WILD-TYPE  34 660
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP63 MUTATED      1    6
  TP63 WILD-TYPE   34  660
                        clus
vv                       TP63 MUTATED TP63 WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            6            660
[1] 2 2
[1] FALSE

Clustering(155) Variable = ZNF334 MUTATION ANALYSIS
D155V1, survival
                  sevent
clus2                0   1
  ZNF334 MUTATED     4   0
  ZNF334 WILD-TYPE 449 334
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               4              783 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               0              334 
$`ZNF334 MUTATED`
TCGA-DB-5274 TCGA-DU-6392 TCGA-HW-8321 TCGA-S9-A7J3 
       75.25       211.17        42.54        20.68 

$`ZNF334 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       35.44        39.75        40.01         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
        2.04        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  ZNF334 MUTATED ZNF334 WILD-TYPE 
           20.68             0.03 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
          211.17           182.33 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
          58.895           16.730 
[1] "20.7 - 211.2 (58.9)" "0.0 - 182.3 (16.7)" 
[1] "hr="     "9600000"
D155V2, continuous
D155V3, binary
                  cls
clus                 0   1
  ZNF334 MUTATED     0   4
  ZNF334 WILD-TYPE 278 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      0    4
  ZNF334 WILD-TYPE  278  508
                        clus
vv                       ZNF334 MUTATED ZNF334 WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D155V4, binary
                  cls
clus                 0   1
  ZNF334 MUTATED     3   1
  ZNF334 WILD-TYPE 326 460
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      3    1
  ZNF334 WILD-TYPE  326  460
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  FEMALE              3              326
  MALE                1              460
[1] 2 2
[1] FALSE
D155V5, binary
                  cls
clus                 0   1
  ZNF334 MUTATED     0   4
  ZNF334 WILD-TYPE 232 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      0    4
  ZNF334 WILD-TYPE  232  504
     clus
vv    ZNF334 MUTATED ZNF334 WILD-TYPE
  NO               0              232
  YES              4              504
[1] 2 2
[1] FALSE
D155V6, continuous
[1] "Remove cluster labels:" "ZNF334 MUTATED"        
clus
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               2              508 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0126       TCGA-06-0128       TCGA-06-0129       TCGA-06-0130 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0139       TCGA-06-0140       TCGA-06-0141       TCGA-06-0151 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0167       TCGA-06-0168       TCGA-06-0169 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0185 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0188       TCGA-06-0192       TCGA-06-0195       TCGA-06-0214 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0238       TCGA-06-0240       TCGA-06-0241 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0646       TCGA-06-0648       TCGA-06-0686 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0878 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-5408       TCGA-06-5410       TCGA-06-5411       TCGA-06-5412 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-5413       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-5418       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6695       TCGA-06-6697 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-06-6700       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5299       TCGA-12-5301 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-14-0740       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-4157       TCGA-15-0742       TCGA-19-1390 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5954       TCGA-19-5958 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5139       TCGA-26-6173 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-2502       TCGA-28-2509 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5219       TCGA-28-5220 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-1986       TCGA-32-2615       TCGA-32-2638 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-32-4213       TCGA-41-2571       TCGA-41-2573       TCGA-41-2575 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-CS-4938       TCGA-CS-4941       TCGA-CS-4942       TCGA-CS-4943 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5395 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-CS-5396       TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-CS-6290       TCGA-CS-6665       TCGA-CS-6666       TCGA-CS-6667 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-CS-6668       TCGA-CS-6669       TCGA-DB-A4XE       TCGA-DB-A64L 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DB-A64Q       TCGA-DB-A64R       TCGA-DB-A64S       TCGA-DB-A64U 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DB-A64V       TCGA-DB-A64W       TCGA-DB-A64X       TCGA-DB-A75L 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DB-A75O       TCGA-DH-5140       TCGA-DH-5142       TCGA-DH-5143 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DH-5144       TCGA-DH-A66B       TCGA-DH-A66D       TCGA-DH-A66F 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DH-A66G       TCGA-DH-A7UR       TCGA-DH-A7UU       TCGA-DH-A7UV 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-5851       TCGA-DU-5852       TCGA-DU-5853       TCGA-DU-5854 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-5855       TCGA-DU-5870       TCGA-DU-5871       TCGA-DU-5874 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-6396       TCGA-DU-6401       TCGA-DU-6403       TCGA-DU-6404 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-6405       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7011       TCGA-DU-7013       TCGA-DU-7015 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7294       TCGA-DU-7298 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-7299       TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-7304       TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-8161       TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8165 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TU       TCGA-DU-A5TW       TCGA-DU-A6S2 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-A6S6       TCGA-DU-A6S7       TCGA-DU-A6S8       TCGA-DU-A76R 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-A7T6       TCGA-DU-A7T8       TCGA-DU-A7TA       TCGA-DU-A7TB 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-DU-A7TC       TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-E1-5302 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-A7YE       TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-A7YK       TCGA-E1-A7YL       TCGA-E1-A7YM       TCGA-E1-A7YN 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-A7YO       TCGA-E1-A7YQ       TCGA-E1-A7YS       TCGA-E1-A7YV 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2       TCGA-E1-A7Z4 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-E1-A7Z6       TCGA-FG-5963       TCGA-FG-5965       TCGA-FG-6688 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-FG-7638       TCGA-FG-8181       TCGA-FG-8185       TCGA-FG-8186 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-A4MT 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-FG-A60L 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-FG-A6J1       TCGA-FG-A6J3       TCGA-FG-A711       TCGA-FG-A713 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-FG-A87Q       TCGA-HT-7468       TCGA-HT-7470       TCGA-HT-7475 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7485 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7609       TCGA-HT-7611       TCGA-HT-7686 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-7689       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7858 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7884       TCGA-HT-8013       TCGA-HT-8105 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-8113       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R7 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-A5RA       TCGA-HT-A5RC       TCGA-HT-A615       TCGA-HT-A617 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-A618       TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A61C 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-HT-A74L       TCGA-IK-7675       TCGA-KT-A74X       TCGA-KT-A7W1 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-P5-A5F0       TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-P5-A731       TCGA-QH-A65R       TCGA-QH-A65S       TCGA-QH-A65V 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-QH-A6CZ       TCGA-QH-A6X3       TCGA-QH-A6X4       TCGA-QH-A6X5 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-QH-A6X8       TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-QH-A86X       TCGA-QH-A870       TCGA-RY-A83Y       TCGA-RY-A840 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-RY-A845       TCGA-RY-A847       TCGA-S9-A6TS       TCGA-S9-A6TU 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A6TV       TCGA-S9-A6TW       TCGA-S9-A6TX       TCGA-S9-A6TY 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A6TZ       TCGA-S9-A6U0       TCGA-S9-A6U1       TCGA-S9-A6U2 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U8       TCGA-S9-A6UA 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A6UB       TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A6WH       TCGA-S9-A6WI       TCGA-S9-A6WL       TCGA-S9-A6WM 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WO       TCGA-S9-A6WP       TCGA-S9-A6WQ 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A7IQ       TCGA-S9-A7IS       TCGA-S9-A7IX       TCGA-S9-A7IY 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A7IZ       TCGA-S9-A7J0       TCGA-S9-A7J1       TCGA-S9-A7J2 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A7QW       TCGA-S9-A7QX       TCGA-S9-A7QY       TCGA-S9-A7QZ 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A7R1       TCGA-S9-A7R2       TCGA-S9-A7R3       TCGA-S9-A7R4 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-S9-A7R7       TCGA-S9-A7R8       TCGA-S9-A89V       TCGA-S9-A89Z 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TM-A7C3       TCGA-TM-A7C4       TCGA-TM-A7C5       TCGA-TM-A7CA 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TM-A7CF       TCGA-TM-A84B       TCGA-TM-A84C       TCGA-TM-A84F 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TM-A84G       TCGA-TM-A84H       TCGA-TM-A84I       TCGA-TM-A84J 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TM-A84L       TCGA-TM-A84M       TCGA-TM-A84O       TCGA-TM-A84Q 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TM-A84T       TCGA-TQ-A7RG 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TQ-A7RK       TCGA-TQ-A7RM       TCGA-TQ-A7RN       TCGA-TQ-A7RO 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TQ-A7RP       TCGA-TQ-A7RQ       TCGA-TQ-A7RR       TCGA-TQ-A7RS 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-TQ-A7RU       TCGA-TQ-A7RV       TCGA-TQ-A7RW       TCGA-TQ-A8XE 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-VM-A8C8       TCGA-VM-A8CA       TCGA-VM-A8CD       TCGA-VM-A8CE 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-VM-A8CF       TCGA-VM-A8CH       TCGA-WY-A858       TCGA-WY-A859 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  ZNF334 MUTATED             2                             0                1
  ZNF334 WILD-TYPE         190                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  ZNF334 MUTATED                   1                   0
  ZNF334 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  ZNF334 MUTATED                                 0
  ZNF334 WILD-TYPE                             265
D155V7, multiclass
                                 clus
vv                                ZNF334 MUTATED ZNF334 WILD-TYPE
  ASTROCYTOMA                                  2              190
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZNF334 MUTATED                                  0     0
  ZNF334 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZNF334 MUTATED                           0     4
  ZNF334 WILD-TYPE                        38   718
D155V8, multiclass
                                  clus
vv                                 ZNF334 MUTATED ZNF334 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         4              718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D155V9, binary
                  cls
clus                 0   1
  ZNF334 MUTATED     0   4
  ZNF334 WILD-TYPE  35 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      0    4
  ZNF334 WILD-TYPE   35  662
                        clus
vv                       ZNF334 MUTATED ZNF334 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(156) Variable = RGS3 MUTATION ANALYSIS
D156V1, survival
                sevent
clus2              0   1
  RGS3 MUTATED     5   3
  RGS3 WILD-TYPE 448 331
  RGS3 MUTATED RGS3 WILD-TYPE 
             8            779 
  RGS3 MUTATED RGS3 WILD-TYPE 
             3            331 
$`RGS3 MUTATED`
TCGA-32-4719 TCGA-76-4929 TCGA-DB-A75L TCGA-DH-A66B TCGA-DU-6392 TCGA-E1-5307 
       10.85         3.65        11.24        42.05       211.17        57.93 
TCGA-HT-8564 TCGA-P5-A780 
       15.72         2.37 

$`RGS3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.86        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 TCGA-76-4932 
        4.80         4.54        17.59         3.09         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       18.51        12.10        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66D 
       31.82        63.88        46.06         8.02        30.21        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5311 TCGA-E1-5318 
       50.14        67.46        41.13        79.99       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV 
       29.59        34.19        13.74        28.27         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O 
       30.44        28.08        24.16        40.83        24.79        33.24 
TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG 
       25.38        18.61        14.93        23.80        21.37        19.69 
TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN 
       15.98         2.04        40.41        44.09        36.69        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  RGS3 MUTATED RGS3 WILD-TYPE 
          2.37           0.03 
  RGS3 MUTATED RGS3 WILD-TYPE 
        211.17         182.33 
  RGS3 MUTATED RGS3 WILD-TYPE 
         13.48          16.83 
[1] "2.4 - 211.2 (13.5)" "0.0 - 182.3 (16.8)"
[1] "hr=" "1.7"
D156V2, continuous
D156V3, binary
                cls
clus               0   1
  RGS3 MUTATED     2   6
  RGS3 WILD-TYPE 276 506
[1] "tbl2"
                cls
clus             [,1] [,2]
  RGS3 MUTATED      2    6
  RGS3 WILD-TYPE  276  506
                        clus
vv                       RGS3 MUTATED RGS3 WILD-TYPE
  BRAIN                             2            276
  CENTRAL NERVOUS SYSTEM            6            506
[1] 2 2
[1] FALSE
D156V4, binary
                cls
clus               0   1
  RGS3 MUTATED     5   3
  RGS3 WILD-TYPE 324 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  RGS3 MUTATED      5    3
  RGS3 WILD-TYPE  324  458
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  FEMALE            5            324
  MALE              3            458
[1] 2 2
[1] FALSE
D156V5, binary
                cls
clus               0   1
  RGS3 MUTATED     1   6
  RGS3 WILD-TYPE 231 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  RGS3 MUTATED      1    6
  RGS3 WILD-TYPE  231  502
     clus
vv    RGS3 MUTATED RGS3 WILD-TYPE
  NO             1            231
  YES            6            502
[1] 2 2
[1] FALSE
D156V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  RGS3 MUTATED             6                             0                0
  RGS3 WILD-TYPE         186                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  RGS3 MUTATED                   0                   0
  RGS3 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  RGS3 MUTATED                                 2
  RGS3 WILD-TYPE                             263
D156V7, multiclass
                                 clus
vv                                RGS3 MUTATED RGS3 WILD-TYPE
  ASTROCYTOMA                                6            186
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            2            263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RGS3 MUTATED                                  0     0
  RGS3 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RGS3 MUTATED                           0     8
  RGS3 WILD-TYPE                        38   714
D156V8, multiclass
                                  clus
vv                                 RGS3 MUTATED RGS3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       8            714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D156V9, binary
                cls
clus               0   1
  RGS3 MUTATED     1   7
  RGS3 WILD-TYPE  34 659
[1] "tbl2"
                cls
clus             [,1] [,2]
  RGS3 MUTATED      1    7
  RGS3 WILD-TYPE   34  659
                        clus
vv                       RGS3 MUTATED RGS3 WILD-TYPE
  HISPANIC OR LATINO                1             34
  NOT HISPANIC OR LATINO            7            659
[1] 2 2
[1] FALSE

Clustering(157) Variable = NKX2-2 MUTATION ANALYSIS
D157V1, survival
                  sevent
clus2                0   1
  NKX2-2 MUTATED     6   0
  NKX2-2 WILD-TYPE 447 334
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               6              781 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               0              334 
$`NKX2-2 MUTATED`
TCGA-DH-A66D TCGA-DU-5853 TCGA-DU-6392 TCGA-DU-7302 TCGA-P5-A5EV TCGA-S9-A6WQ 
       27.81        13.38       211.17        60.30         0.23        14.07 

$`NKX2-2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
        8.02        30.21        42.05        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       17.46         6.74         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       25.91        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM 
       93.21         3.65        19.46        12.43        16.18        21.30 
TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       23.90        75.02        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EW 
       20.71        19.00        42.77        14.40        14.40         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X 
       16.34        16.73         1.91        16.50         5.03        11.08 
TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X 
       12.99        88.83        94.03        32.65        59.38        30.87 
TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 
        5.46         9.90        28.08         2.07        19.59        30.67 
TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY 
       62.17        87.12        18.77        41.10        28.14        35.38 
TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 
       36.82        24.39        25.81        29.85        32.61        35.15 
TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE 
       98.24        95.93         5.85       123.65        75.25       135.22 
TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN 
       85.55        38.56        84.99        31.10        19.86        26.47 
TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.61        18.64        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
            0.23             0.03 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
          211.17           182.33 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
           20.94            16.83 
[1] "0.2 - 211.2 (20.9)" "0.0 - 182.3 (16.8)"
[1] "hr="     "9600000"
D157V2, continuous
D157V3, binary
                  cls
clus                 0   1
  NKX2-2 MUTATED     0   6
  NKX2-2 WILD-TYPE 278 506
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX2-2 MUTATED      0    6
  NKX2-2 WILD-TYPE  278  506
                        clus
vv                       NKX2-2 MUTATED NKX2-2 WILD-TYPE
  BRAIN                               0              278
  CENTRAL NERVOUS SYSTEM              6              506
[1] 2 2
[1] FALSE
D157V4, binary
                  cls
clus                 0   1
  NKX2-2 MUTATED     4   2
  NKX2-2 WILD-TYPE 325 459
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX2-2 MUTATED      4    2
  NKX2-2 WILD-TYPE  325  459
        clus
vv       NKX2-2 MUTATED NKX2-2 WILD-TYPE
  FEMALE              4              325
  MALE                2              459
[1] 2 2
[1] FALSE
D157V5, binary
                  cls
clus                 0   1
  NKX2-2 MUTATED     2   3
  NKX2-2 WILD-TYPE 230 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX2-2 MUTATED      2    3
  NKX2-2 WILD-TYPE  230  505
     clus
vv    NKX2-2 MUTATED NKX2-2 WILD-TYPE
  NO               2              230
  YES              3              505
[1] 2 2
[1] FALSE
D157V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  NKX2-2 MUTATED             3                             0                2
  NKX2-2 WILD-TYPE         189                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  NKX2-2 MUTATED                   1                   0
  NKX2-2 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  NKX2-2 MUTATED                                 0
  NKX2-2 WILD-TYPE                             265
D157V7, multiclass
                                 clus
vv                                NKX2-2 MUTATED NKX2-2 WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              0              265
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NKX2-2 MUTATED                                  0     0
  NKX2-2 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  NKX2-2 MUTATED                           0     6
  NKX2-2 WILD-TYPE                        38   716
D157V8, multiclass
                                  clus
vv                                 NKX2-2 MUTATED NKX2-2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         6              716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D157V9, binary
                  cls
clus                 0   1
  NKX2-2 MUTATED     0   6
  NKX2-2 WILD-TYPE  35 660
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX2-2 MUTATED      0    6
  NKX2-2 WILD-TYPE   35  660
                        clus
vv                       NKX2-2 MUTATED NKX2-2 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              6              660
[1] 2 2
[1] FALSE

Clustering(158) Variable = SEZ6L2 MUTATION ANALYSIS
D158V1, survival
                  sevent
clus2                0   1
  SEZ6L2 MUTATED     3   4
  SEZ6L2 WILD-TYPE 450 330
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
               7              780 
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
               4              330 
$`SEZ6L2 MUTATED`
TCGA-12-0619 TCGA-27-2518 TCGA-32-1979 TCGA-32-4213 TCGA-DB-A64W TCGA-HT-7695 
       34.92        24.76        19.50        19.86        14.40        14.53 
TCGA-P5-A733 
       13.61 

$`SEZ6L2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0688 
        4.96        18.02        15.35        14.73        12.99        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
       13.78        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       24.23         7.00         4.50         6.64        17.19         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.90         4.73        12.10         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       14.04        11.51        18.08        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26        14.93        11.28 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       17.88         2.53        11.77        31.27        23.44        11.01 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         5.16        22.68        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
        0.10         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 
       21.14        20.32         3.72        12.59        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        15.12        12.46         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.34        14.33         7.50         4.80         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.17        47.93         2.53        36.85 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.70         3.29         2.70        11.38        17.06         8.35 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.98         4.83         5.03        23.90        34.45        18.64 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 
       36.20         1.61        17.72        26.30         4.70         7.69 
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
       43.89        18.15        10.62        64.64        40.18         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
       21.01         9.96         6.38        17.69        23.84        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       12.43        46.95         7.56        49.94        49.12         6.61 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
      122.73        81.96        75.25        47.93        72.92        50.86 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA 
       91.13        44.52        36.56        78.28        46.42        18.84 
TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG 
       30.21        46.72        39.78        37.45        33.57        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       31.63        24.20        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.45        27.81        29.23        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 
        6.81       182.33        18.94        17.49        15.16       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
       94.32        18.94        44.02        62.01        25.91        60.30 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
       23.31        41.98         2.76         5.10        23.74        14.60 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
       20.68        21.40        19.13        16.96        15.48        14.17 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       33.27        29.85        31.69        24.43        26.17        24.99 
TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 
       33.96        25.55        21.57        95.11        20.98        22.29 
TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 
       11.41        26.76        17.16        21.30        17.98       139.04 
TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ 
       84.33        51.52        37.38         7.50        44.42         0.56 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 
       50.14        67.46        41.13        79.99        57.93       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH 
       78.21        95.57       130.78        14.30        29.13        93.21 
TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
        3.65        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 
       14.76        17.82        21.53        15.02        16.44        22.26 
TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N 
       28.54        10.78        36.66        48.69        20.45        18.64 
TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
        5.72        27.52         0.10         6.67        11.54        40.11 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.13         0.03        16.54         3.75        17.42         6.54 
TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 
       24.26         6.38        40.34        75.19        95.93       106.95 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 
      172.77         4.01         5.03        29.85        23.18       122.47 
TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 
        4.57        17.29         3.16        22.06        45.99        56.09 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.60         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 
       44.68         6.05        42.74         0.10        31.69        14.96 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7854 
        0.10         0.10         2.96        17.52         6.90        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
        9.01         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
           13.61             0.03 
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
           34.92           211.17 
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
          19.500           16.815 
[1] "13.6 - 34.9 (19.5)" "0.0 - 211.2 (16.8)"
[1] "hr=" "1.5"
D158V2, continuous
D158V3, binary
                  cls
clus                 0   1
  SEZ6L2 MUTATED     4   3
  SEZ6L2 WILD-TYPE 274 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEZ6L2 MUTATED      4    3
  SEZ6L2 WILD-TYPE  274  509
                        clus
vv                       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  BRAIN                               4              274
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D158V4, binary
                  cls
clus                 0   1
  SEZ6L2 MUTATED     5   2
  SEZ6L2 WILD-TYPE 324 459
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEZ6L2 MUTATED      5    2
  SEZ6L2 WILD-TYPE  324  459
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  FEMALE              5              324
  MALE                2              459
[1] 2 2
[1] FALSE
D158V5, binary
                  cls
clus                 0   1
  SEZ6L2 MUTATED     0   6
  SEZ6L2 WILD-TYPE 232 502
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEZ6L2 MUTATED      0    6
  SEZ6L2 WILD-TYPE  232  502
     clus
vv    SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  NO               0              232
  YES              6              502
[1] 2 2
[1] FALSE
D158V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SEZ6L2 MUTATED             1                             0                1
  SEZ6L2 WILD-TYPE         191                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SEZ6L2 MUTATED                   1                   0
  SEZ6L2 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  SEZ6L2 MUTATED                                 4
  SEZ6L2 WILD-TYPE                             261
D158V7, multiclass
                                 clus
vv                                SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              4              261
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SEZ6L2 MUTATED                                  0     0
  SEZ6L2 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  SEZ6L2 MUTATED                           0     7
  SEZ6L2 WILD-TYPE                        38   715
D158V8, multiclass
                                  clus
vv                                 SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         7              715
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D158V9, binary
                  cls
clus                 0   1
  SEZ6L2 MUTATED     0   7
  SEZ6L2 WILD-TYPE  35 659
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEZ6L2 MUTATED      0    7
  SEZ6L2 WILD-TYPE   35  659
                        clus
vv                       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              7              659
[1] 2 2
[1] FALSE

Clustering(159) Variable = MYH8 MUTATION ANALYSIS
D159V1, survival
                sevent
clus2              0   1
  MYH8 MUTATED    15   5
  MYH8 WILD-TYPE 438 329
  MYH8 MUTATED MYH8 WILD-TYPE 
            20            767 
  MYH8 MUTATED MYH8 WILD-TYPE 
             5            329 
$`MYH8 MUTATED`
TCGA-06-0188 TCGA-12-5295 TCGA-19-2623 TCGA-26-6173 TCGA-28-2509 TCGA-76-4928 
       44.58        14.93         7.53         7.92         4.77         3.09 
TCGA-DH-5142 TCGA-DU-6392 TCGA-DU-A5TW TCGA-E1-A7YE TCGA-E1-A7YL TCGA-FG-A6J3 
       63.88       211.17        24.99        29.13        16.18        22.26 
TCGA-HT-7480 TCGA-HT-7608 TCGA-HT-7860 TCGA-HT-8564 TCGA-P5-A731 TCGA-QH-A65R 
       75.19        22.06         0.49        15.72         9.01        15.16 
TCGA-TM-A7C4 TCGA-TQ-A7RM 
       48.33        36.69 

$`MYH8 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       69.90        73.84        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.53         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        9.67         4.87         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2513 
       15.78         2.53         1.22         3.12         0.66         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26        14.93        11.28        17.88         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       31.27        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 
       14.33         7.50         4.80         4.54        17.59         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5143 TCGA-DH-5144 
       30.74        16.18        19.96        31.82        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       24.43        26.17        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YM TCGA-E1-A7YN 
       93.21         3.65        19.46        12.43        21.30        23.90 
TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW 
       75.02        51.88        15.32         0.76        32.45        36.82 
TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 
      146.14        13.08        73.48       145.05        32.35        39.48 
TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
        0.23         0.20        47.77        25.48        52.21        36.82 
TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
       18.77        14.93        42.54        41.33        18.44        15.35 
TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       17.88        40.08        22.55        20.61        20.09        28.34 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 
       13.68        14.24        16.01        20.09        14.96        22.52 
TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY 
       32.61        38.27        10.72        18.38        18.71        23.70 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A70Y 
       14.76        17.82        21.53        15.02        16.44        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
        6.38        40.34        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
        3.16        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        0.23        50.63        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       28.27         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       11.64        10.95        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65S TCGA-QH-A65V 
       19.20         3.45         2.37         4.41         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RN 
       19.69        15.98         2.04        40.41        44.09        33.73 
TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV 
       31.20        30.05        26.14        25.87        33.93        61.41 
TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB 
       26.99        31.36        43.04        43.20        13.51         0.10 
TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M 
        7.89        39.16        20.02        23.47        37.05        16.01 
TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 
       23.21         8.05        51.06        13.32        43.96        39.88 
TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       43.40        45.80        46.88        37.71        20.81 

  MYH8 MUTATED MYH8 WILD-TYPE 
          0.49           0.03 
  MYH8 MUTATED MYH8 WILD-TYPE 
        211.17         182.33 
  MYH8 MUTATED MYH8 WILD-TYPE 
         19.12          16.83 
[1] "0.5 - 211.2 (19.1)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.2"
D159V2, continuous
D159V3, binary
                cls
clus               0   1
  MYH8 MUTATED     6  14
  MYH8 WILD-TYPE 272 498
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH8 MUTATED      6   14
  MYH8 WILD-TYPE  272  498
                        clus
vv                       MYH8 MUTATED MYH8 WILD-TYPE
  BRAIN                             6            272
  CENTRAL NERVOUS SYSTEM           14            498
[1] 2 2
[1] FALSE
D159V4, binary
                cls
clus               0   1
  MYH8 MUTATED    12   8
  MYH8 WILD-TYPE 317 453
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH8 MUTATED     12    8
  MYH8 WILD-TYPE  317  453
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  FEMALE           12            317
  MALE              8            453
[1] 2 2
[1] FALSE
D159V5, binary
                cls
clus               0   1
  MYH8 MUTATED     4  15
  MYH8 WILD-TYPE 228 493
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH8 MUTATED      4   15
  MYH8 WILD-TYPE  228  493
     clus
vv    MYH8 MUTATED MYH8 WILD-TYPE
  NO             4            228
  YES           15            493
[1] 2 2
[1] FALSE
D159V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  MYH8 MUTATED             9                             0                3
  MYH8 WILD-TYPE         183                             9              127
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  MYH8 MUTATED                   2                   0
  MYH8 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  MYH8 MUTATED                                 6
  MYH8 WILD-TYPE                             259
D159V7, multiclass
                                 clus
vv                                MYH8 MUTATED MYH8 WILD-TYPE
  ASTROCYTOMA                                9            183
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           3            127
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            6            259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYH8 MUTATED                                  0     0
  MYH8 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  MYH8 MUTATED                           2    18
  MYH8 WILD-TYPE                        36   704
D159V8, multiclass
                                  clus
vv                                 MYH8 MUTATED MYH8 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   2             36
  WHITE                                      18            704
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D159V9, binary
                cls
clus               0   1
  MYH8 MUTATED     2  17
  MYH8 WILD-TYPE  33 649
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH8 MUTATED      2   17
  MYH8 WILD-TYPE   33  649
                        clus
vv                       MYH8 MUTATED MYH8 WILD-TYPE
  HISPANIC OR LATINO                2             33
  NOT HISPANIC OR LATINO           17            649
[1] 2 2
[1] FALSE

Clustering(160) Variable = CYP11A1 MUTATION ANALYSIS
D160V1, survival
                   sevent
clus2                 0   1
  CYP11A1 MUTATED     2   5
  CYP11A1 WILD-TYPE 451 329
  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
                7               780 
  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
                5               329 
$`CYP11A1 MUTATED`
TCGA-06-2562 TCGA-06-2567 TCGA-06-5408 TCGA-DB-A64L TCGA-E1-A7YI TCGA-E1-A7YO 
       12.56         4.37        11.74        24.20         3.65        75.02 
TCGA-TQ-A7RP 
       30.05 

$`CYP11A1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 
       30.64         5.95        16.64         0.43        31.50         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R 
       72.95        31.63        25.48        30.12         5.98        31.40 
TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K 
       27.45        27.81        29.23        14.40        18.51        12.10 
TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 
       11.24        17.88        30.74        16.18        19.96        31.82 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
       63.88        46.06         8.02        30.21        42.05        27.81 
TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU 
       17.19        17.19        54.25        23.21        17.46        13.71 
TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 
       18.61        18.02        14.56        17.46         6.74        13.38 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
        8.45         6.81       182.33        18.94        17.49        15.16 
TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      211.17        52.11        22.42        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       65.75         1.22        87.45         7.04        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 
       19.89        16.83        94.52       114.08         7.96         2.40 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 
       11.47        62.96       156.23       154.36        14.99       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        6.54         8.84        90.77        30.67        26.30        10.36 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 
        7.96        94.32        18.94        44.02        62.01        25.91 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 
       60.30        23.31        41.98         2.76         5.10        23.74 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 
       14.60        20.68        21.40        19.13        16.96        15.48 
TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU 
       14.17        33.27        29.85        31.69        24.43        26.17 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 
       24.99        33.96        25.55        21.57        95.11        20.98 
TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 
       22.29        11.41        26.76        17.16        21.30        17.98 
TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG 
      139.04        84.33        51.52        37.38         7.50        44.42 
TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        0.56        50.14        67.46        41.13        79.99        57.93 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE 
      134.27        78.21        95.57       130.78        14.30        29.13 
TCGA-E1-A7YH TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN 
       93.21        19.46        12.43        16.18        21.30        23.90 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
        0.10         2.96        17.52         6.90        14.53        39.48 
TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 
       19.23        39.09         0.23        50.63         0.49        23.61 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       37.15         0.33         0.13         3.68         5.33        35.47 
TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
        3.72        11.28        31.43         1.64        16.24         9.40 
TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 
       63.55         0.10        37.87        33.01        12.23         6.25 
TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 
        0.10         0.46         2.50         5.56        13.78         0.23 
TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS 
       29.59        34.19        13.74        28.27        15.72         0.23 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
       26.04         0.13        20.22         0.07        27.35         0.10 
TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 
        5.33         2.70        16.93         1.81        16.14        16.83 
TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J 
       21.40         6.38        17.52        17.65         2.43        10.52 
TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
       15.35        11.05         0.10        56.58        13.45        41.49 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 
       45.60        68.32        35.44        39.75        40.01        42.54 
TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 
        6.18        10.55        12.76        20.81        20.71        19.00 
TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX 
       42.77        14.40        14.40         0.23         6.71         7.99 
TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 
        2.37         2.30         4.11         5.88         7.63         0.76 
TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 
        1.28         0.23        10.42        13.25        11.64        10.95 
TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W 
        9.01        13.61         9.60         7.56        12.23        19.20 
TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V 
        3.45         2.37         4.41        15.16         2.53        12.62 
TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW 
       15.85        14.04        19.33        14.83        14.53        13.61 
TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 
       12.23         2.20         9.17        10.29        14.53        16.34 
TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 
       16.73         1.91        16.50         5.03        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       36.69        33.73        31.20        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
             3.65              0.03 
  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
            75.02            211.17 
  CYP11A1 MUTATED CYP11A1 WILD-TYPE 
            12.56             16.83 
[1] "3.6 - 75.0 (12.6)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.8"
D160V2, continuous
D160V3, binary
                   cls
clus                  0   1
  CYP11A1 MUTATED     3   4
  CYP11A1 WILD-TYPE 275 508
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11A1 MUTATED      3    4
  CYP11A1 WILD-TYPE  275  508
                        clus
vv                       CYP11A1 MUTATED CYP11A1 WILD-TYPE
  BRAIN                                3               275
  CENTRAL NERVOUS SYSTEM               4               508
[1] 2 2
[1] FALSE
D160V4, binary
                   cls
clus                  0   1
  CYP11A1 MUTATED     3   4
  CYP11A1 WILD-TYPE 326 457
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11A1 MUTATED      3    4
  CYP11A1 WILD-TYPE  326  457
        clus
vv       CYP11A1 MUTATED CYP11A1 WILD-TYPE
  FEMALE               3               326
  MALE                 4               457
[1] 2 2
[1] FALSE
D160V5, binary
                   cls
clus                  0   1
  CYP11A1 MUTATED     3   4
  CYP11A1 WILD-TYPE 229 504
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11A1 MUTATED      3    4
  CYP11A1 WILD-TYPE  229  504
     clus
vv    CYP11A1 MUTATED CYP11A1 WILD-TYPE
  NO                3               229
  YES               4               504
[1] 2 2
[1] FALSE
D160V6, continuous
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CYP11A1 MUTATED             1                             0                1
  CYP11A1 WILD-TYPE         191                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CYP11A1 MUTATED                   2                   0
  CYP11A1 WILD-TYPE               188                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  CYP11A1 MUTATED                                 3
  CYP11A1 WILD-TYPE                             262
D160V7, multiclass
                                 clus
vv                                CYP11A1 MUTATED CYP11A1 WILD-TYPE
  ASTROCYTOMA                                   1               191
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             2               188
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               3               262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CYP11A1 MUTATED                                  0     0
  CYP11A1 WILD-TYPE                                1    13
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  CYP11A1 MUTATED                           1     6
  CYP11A1 WILD-TYPE                        37   716
D160V8, multiclass
                                  clus
vv                                 CYP11A1 MUTATED CYP11A1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                13
  BLACK OR AFRICAN AMERICAN                      1                37
  WHITE                                          6               716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D160V9, binary
                   cls
clus                  0   1
  CYP11A1 MUTATED     1   6
  CYP11A1 WILD-TYPE  34 660
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11A1 MUTATED      1    6
  CYP11A1 WILD-TYPE   34  660
                        clus
vv                       CYP11A1 MUTATED CYP11A1 WILD-TYPE
  HISPANIC OR LATINO                   1                34
  NOT HISPANIC OR LATINO               6               660
[1] 2 2
[1] FALSE

Clustering(161) Variable = TJAP1 MUTATION ANALYSIS
D161V1, survival
                 sevent
clus2               0   1
  TJAP1 MUTATED     2   1
  TJAP1 WILD-TYPE 451 333
  TJAP1 MUTATED TJAP1 WILD-TYPE 
              3             784 
  TJAP1 MUTATED TJAP1 WILD-TYPE 
              1             333 
$`TJAP1 MUTATED`
TCGA-26-5132 TCGA-76-4934 TCGA-DU-6392 
        9.40         2.53       211.17 

$`TJAP1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
       16.80        14.96        13.87        31.33        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
       47.93        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  TJAP1 MUTATED TJAP1 WILD-TYPE 
           2.53            0.03 
  TJAP1 MUTATED TJAP1 WILD-TYPE 
         211.17          182.33 
  TJAP1 MUTATED TJAP1 WILD-TYPE 
           9.40           16.83 
[1] "2.5 - 211.2 (9.4)"  "0.0 - 182.3 (16.8)"
[1] "hr=" "2.9"
D161V2, continuous
D161V3, binary
                 cls
clus                0   1
  TJAP1 MUTATED     2   1
  TJAP1 WILD-TYPE 276 511
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TJAP1 MUTATED      2    1
  TJAP1 WILD-TYPE  276  511
                        clus
vv                       TJAP1 MUTATED TJAP1 WILD-TYPE
  BRAIN                              2             276
  CENTRAL NERVOUS SYSTEM             1             511
[1] 2 2
[1] FALSE
D161V4, binary
                 cls
clus                0   1
  TJAP1 MUTATED     2   1
  TJAP1 WILD-TYPE 327 460
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TJAP1 MUTATED      2    1
  TJAP1 WILD-TYPE  327  460
        clus
vv       TJAP1 MUTATED TJAP1 WILD-TYPE
  FEMALE             2             327
  MALE               1             460
[1] 2 2
[1] FALSE
D161V5, binary
                 cls
clus                0   1
  TJAP1 MUTATED     1   2
  TJAP1 WILD-TYPE 231 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TJAP1 MUTATED      1    2
  TJAP1 WILD-TYPE  231  506
     clus
vv    TJAP1 MUTATED TJAP1 WILD-TYPE
  NO              1             231
  YES             2             506
[1] 2 2
[1] FALSE
D161V6, continuous
[1] "Remove cluster labels:" "TJAP1 MUTATED"         
clus
  TJAP1 MUTATED TJAP1 WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1442      TCGA-26-5133 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5219      TCGA-28-5220      TCGA-32-1982 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-32-1986      TCGA-32-2615      TCGA-32-2638      TCGA-32-4213 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2573      TCGA-41-2575      TCGA-74-6573 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4935 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-76-6191      TCGA-76-6192      TCGA-76-6193      TCGA-76-6280 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6285      TCGA-76-6286      TCGA-76-6656 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6661      TCGA-76-6662      TCGA-76-6663 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910      TCGA-CS-4938      TCGA-CS-4941 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5395      TCGA-CS-5396      TCGA-CS-5397 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6290      TCGA-CS-6665 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6667      TCGA-CS-6668      TCGA-CS-6669 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L      TCGA-DB-A64Q 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U      TCGA-DB-A64V 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L      TCGA-DB-A75O 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F      TCGA-DH-A66G 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV      TCGA-DU-5851 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874      TCGA-DU-6396 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-7009 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7299 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165      TCGA-DU-8167 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2      TCGA-DU-A6S6 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R      TCGA-DU-A7T6 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB      TCGA-DU-A7TC 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302      TCGA-E1-5303 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-E1-A7YE 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ      TCGA-E1-A7YK 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN      TCGA-E1-A7YO 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV      TCGA-E1-A7YW 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4      TCGA-E1-A7Z6 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636      TCGA-FG-7638 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT      TCGA-FG-A4MW 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L      TCGA-FG-A6J1 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713      TCGA-FG-A87Q 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475      TCGA-HT-7477 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485      TCGA-HT-7607 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686      TCGA-HT-7689 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7854 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858      TCGA-HT-7875 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105      TCGA-HT-8113 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7      TCGA-HT-A5RA 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617      TCGA-HT-A618 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C      TCGA-HT-A74L 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1      TCGA-P5-A5EU 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5F0 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6      TCGA-P5-A731 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V      TCGA-QH-A65X 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU      TCGA-QH-A6CV 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY      TCGA-QH-A6CZ 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5      TCGA-QH-A6X8 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC      TCGA-QH-A86X 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840      TCGA-RY-A845 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU      TCGA-S9-A6TV 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY      TCGA-S9-A6TZ 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2      TCGA-S9-A6U5 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA      TCGA-S9-A6UB 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG      TCGA-S9-A6WH 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM      TCGA-S9-A6WN 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ      TCGA-S9-A7IQ 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY      TCGA-S9-A7IZ 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7J3 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY      TCGA-S9-A7QZ 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3      TCGA-S9-A7R4 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V      TCGA-S9-A89Z 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5      TCGA-TM-A7CA 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C      TCGA-TM-A84F 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" "TJAP1 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TJAP1 MUTATED             1                             0                0
  TJAP1 WILD-TYPE         191                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TJAP1 MUTATED                   0                   0
  TJAP1 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TJAP1 MUTATED                                 2
  TJAP1 WILD-TYPE                             263
D161V7, multiclass
                                 clus
vv                                TJAP1 MUTATED TJAP1 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             2             263
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TJAP1 MUTATED                                  0     0
  TJAP1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  TJAP1 MUTATED                           0     3
  TJAP1 WILD-TYPE                        38   719
D161V8, multiclass
                                  clus
vv                                 TJAP1 MUTATED TJAP1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        3             719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D161V9, binary
                 cls
clus                0   1
  TJAP1 MUTATED     0   2
  TJAP1 WILD-TYPE  35 664
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TJAP1 MUTATED      0    2
  TJAP1 WILD-TYPE   35  664
                        clus
vv                       TJAP1 MUTATED TJAP1 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             2             664
[1] 2 2
[1] FALSE

Clustering(162) Variable = PRKCD MUTATION ANALYSIS
D162V1, survival
                 sevent
clus2               0   1
  PRKCD MUTATED     2   1
  PRKCD WILD-TYPE 451 333
  PRKCD MUTATED PRKCD WILD-TYPE 
              3             784 
  PRKCD MUTATED PRKCD WILD-TYPE 
              1             333 
$`PRKCD MUTATED`
TCGA-06-0145 TCGA-14-4157 TCGA-26-5133 
        2.33         3.42        14.86 

$`PRKCD WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        0.20        10.29         2.20        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        3.65        10.62        22.19        15.22        10.95        34.92 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       14.53        14.93         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-15-0742 
       17.85         7.63         7.17        17.49         0.39        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        24.23 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        17.19         8.02        18.90 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73        12.10         1.78        14.07        16.80        14.96 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       13.87        31.33         9.40         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       13.38         8.45         6.81       182.33        18.94        17.49 
TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       15.16       211.17        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  PRKCD MUTATED PRKCD WILD-TYPE 
           2.33            0.03 
  PRKCD MUTATED PRKCD WILD-TYPE 
          14.86          211.17 
  PRKCD MUTATED PRKCD WILD-TYPE 
           3.42           16.88 
[1] "2.3 - 14.9 (3.4)"   "0.0 - 211.2 (16.9)"
[1] "hr=" "2.7"
D162V2, continuous
D162V3, binary
                 cls
clus                0   1
  PRKCD MUTATED     3   0
  PRKCD WILD-TYPE 275 512
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCD MUTATED      3    0
  PRKCD WILD-TYPE  275  512
                        clus
vv                       PRKCD MUTATED PRKCD WILD-TYPE
  BRAIN                              3             275
  CENTRAL NERVOUS SYSTEM             0             512
[1] 2 2
[1] FALSE
D162V4, binary
                 cls
clus                0   1
  PRKCD MUTATED     1   2
  PRKCD WILD-TYPE 328 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCD MUTATED      1    2
  PRKCD WILD-TYPE  328  459
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  FEMALE             1             328
  MALE               2             459
[1] 2 2
[1] FALSE
D162V5, binary
                 cls
clus                0   1
  PRKCD MUTATED     1   2
  PRKCD WILD-TYPE 231 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCD MUTATED      1    2
  PRKCD WILD-TYPE  231  506
     clus
vv    PRKCD MUTATED PRKCD WILD-TYPE
  NO              1             231
  YES             2             506
[1] 2 2
[1] FALSE
D162V6, continuous
[1] "Remove cluster labels:" "PRKCD MUTATED"         
clus
  PRKCD MUTATED PRKCD WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-14-2554      TCGA-15-0742      TCGA-19-1390      TCGA-19-1790 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2631 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5954      TCGA-19-5958      TCGA-19-5959 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5134 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-26-5139      TCGA-26-6173      TCGA-26-6174      TCGA-27-1830 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-27-1831      TCGA-27-1832      TCGA-27-1833      TCGA-27-1834 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-27-1835      TCGA-27-1836      TCGA-27-1837      TCGA-27-1838 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-27-2518      TCGA-27-2519      TCGA-27-2521      TCGA-27-2523 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-27-2524      TCGA-27-2526      TCGA-27-2527      TCGA-27-2528 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5211 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-28-5213      TCGA-28-5214      TCGA-28-5215      TCGA-28-5216 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-28-5219      TCGA-28-5220      TCGA-32-1982      TCGA-32-1986 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2638      TCGA-32-4213      TCGA-41-2571 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-74-6573      TCGA-74-6575 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-74-6577      TCGA-74-6578      TCGA-74-6584      TCGA-76-4925 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-76-4926      TCGA-76-4927      TCGA-76-4928      TCGA-76-4929 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-76-4931      TCGA-76-4932      TCGA-76-4934      TCGA-76-4935 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-76-6191      TCGA-76-6192      TCGA-76-6193      TCGA-76-6280 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-76-6282      TCGA-76-6285      TCGA-76-6286      TCGA-76-6656 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-76-6657      TCGA-76-6661      TCGA-76-6662      TCGA-76-6663 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-76-6664      TCGA-81-5910      TCGA-CS-4938      TCGA-CS-4941 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5395      TCGA-CS-5396      TCGA-CS-5397 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6290      TCGA-CS-6665 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6667      TCGA-CS-6668      TCGA-CS-6669 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L      TCGA-DB-A64Q 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U      TCGA-DB-A64V 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L      TCGA-DB-A75O 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F      TCGA-DH-A66G 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV      TCGA-DU-5851 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874      TCGA-DU-6396 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-7009 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7299 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165      TCGA-DU-8167 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2      TCGA-DU-A6S6 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R      TCGA-DU-A7T6 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB      TCGA-DU-A7TC 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302      TCGA-E1-5303 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-E1-A7YE 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ      TCGA-E1-A7YK 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN      TCGA-E1-A7YO 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV      TCGA-E1-A7YW 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4      TCGA-E1-A7Z6 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636      TCGA-FG-7638 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT      TCGA-FG-A4MW 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L      TCGA-FG-A6J1 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713      TCGA-FG-A87Q 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475      TCGA-HT-7477 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485      TCGA-HT-7607 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686      TCGA-HT-7689 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7854 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858      TCGA-HT-7875 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105      TCGA-HT-8113 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7      TCGA-HT-A5RA 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617      TCGA-HT-A618 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C      TCGA-HT-A74L 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1      TCGA-P5-A5EU 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5F0 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6      TCGA-P5-A731 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V      TCGA-QH-A65X 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU      TCGA-QH-A6CV 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY      TCGA-QH-A6CZ 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5      TCGA-QH-A6X8 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC      TCGA-QH-A86X 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840      TCGA-RY-A845 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU      TCGA-S9-A6TV 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY      TCGA-S9-A6TZ 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2      TCGA-S9-A6U5 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA      TCGA-S9-A6UB 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG      TCGA-S9-A6WH 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM      TCGA-S9-A6WN 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ      TCGA-S9-A7IQ 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY      TCGA-S9-A7IZ 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7J3 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY      TCGA-S9-A7QZ 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3      TCGA-S9-A7R4 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V      TCGA-S9-A89Z 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5      TCGA-TM-A7CA 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C      TCGA-TM-A84F 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PRKCD MUTATED             0                             0                0
  PRKCD WILD-TYPE         192                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PRKCD MUTATED                   0                   0
  PRKCD WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  PRKCD MUTATED                                 3
  PRKCD WILD-TYPE                             262
D162V7, multiclass
                                 clus
vv                                PRKCD MUTATED PRKCD WILD-TYPE
  ASTROCYTOMA                                 0             192
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             3             262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PRKCD MUTATED                                  0     0
  PRKCD WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  PRKCD MUTATED                           1     2
  PRKCD WILD-TYPE                        37   720
D162V8, multiclass
                                  clus
vv                                 PRKCD MUTATED PRKCD WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    1              37
  WHITE                                        2             720
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D162V9, binary
                 cls
clus                0   1
  PRKCD MUTATED     0   2
  PRKCD WILD-TYPE  35 664
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCD MUTATED      0    2
  PRKCD WILD-TYPE   35  664
                        clus
vv                       PRKCD MUTATED PRKCD WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             2             664
[1] 2 2
[1] FALSE

Clustering(163) Variable = FLNB MUTATION ANALYSIS
D163V1, survival
                sevent
clus2              0   1
  FLNB MUTATED     7   3
  FLNB WILD-TYPE 446 331
  FLNB MUTATED FLNB WILD-TYPE 
            10            777 
  FLNB MUTATED FLNB WILD-TYPE 
             3            331 
$`FLNB MUTATED`
TCGA-02-0033 TCGA-12-1597 TCGA-16-1045 TCGA-DU-5855 TCGA-DU-6392 TCGA-DU-7302 
        2.83        22.19        29.03         6.81       211.17        60.30 
TCGA-HT-7691 TCGA-IK-8125 TCGA-QH-A65S TCGA-TM-A84Q 
        0.10        42.77         2.53        25.38 

$`FLNB WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08        12.49         4.93        17.65        12.56 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95        16.64         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.74         3.55         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         5.10         2.73         3.75         6.15         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        5.23         7.79         5.39         1.48       120.56         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       18.02        15.35        14.73        12.99        34.92        26.66 
TCGA-12-0692 TCGA-12-0821 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
        3.65        10.62        15.22        10.95        34.92        14.53 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       14.93         3.22         2.04        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.78         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.93         0.79         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42        13.78 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
       50.53         3.91         4.31        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.78         2.53         1.22         3.12         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26        14.93        11.28        17.88 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77        31.27        23.44        11.01        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        5.16        22.68        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        15.02        15.95         8.84        22.78        25.18 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.14        20.32         3.72        12.59        19.86        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.23         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        15.12        12.46         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
       20.91         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       36.85        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.35        20.98         4.83         5.03        23.90        34.45 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 
       18.64        36.20         1.61        17.72        26.30         4.70 
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 
        7.69        43.89        18.15        10.62        64.64        40.18 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        0.10        21.01         9.96         6.38        17.69        23.84 
TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 
       17.95        12.43        46.95         7.56        49.94        49.12 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        6.61       122.73        81.96        75.25        47.93        72.92 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 
       50.86        91.13        44.52        36.56        78.28        46.42 
TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       18.84        30.21        46.72        39.78        37.45        33.57 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q 
       72.95        31.63        24.20        25.48        30.12         5.98 
TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X 
       31.40        27.45        27.81        29.23        14.40        18.51 
TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 
       12.10        11.24        17.88        30.74        16.18        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B 
       31.82        63.88        46.06         8.02        30.21        42.05 
TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT 
       27.81        17.19        17.19        54.25        23.21        17.46 
TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 
       13.71        18.61        18.02        14.56        17.46         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 
       13.38         8.45       182.33        18.94        17.49        15.16 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 
       52.11        22.42        49.02        75.16        46.06        65.75 
TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        1.22        87.45         7.04        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 
       16.83        94.52       114.08         7.96         2.40        11.47 
TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 
       62.96       156.23       154.36        14.99       105.21         6.54 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        8.84        90.77        30.67        26.30        10.36         7.96 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7304 
       94.32        18.94        44.02        62.01        25.91        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 
       41.98         2.76         5.10        23.74        14.60        20.68 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP 
       21.40        19.13        16.96        15.48        14.17        33.27 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY 
       29.85        31.69        24.43        26.17        24.99        33.96 
TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K 
       25.55        21.57        95.11        20.98        22.29        11.41 
TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA 
       26.76        17.16        21.30        17.98       139.04        84.33 
TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 
       51.52        37.38         7.50        44.42         0.56        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
       67.46        41.13        79.99        57.93       134.27        78.21 
TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI 
       95.57       130.78        14.30        29.13        93.21         3.65 
TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO 
       19.46        12.43        16.18        21.30        23.90        75.02 
TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY 
       51.88        15.32         0.76        32.45        36.82       146.14 
TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 
       13.08        73.48       145.05        32.35        39.48         0.23 
TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
        0.20        47.77        25.48        52.21        36.82        18.77 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
       14.93        42.54        41.33        18.44        15.35        17.88 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 
       40.08        22.55        20.61        20.09        28.34        13.68 
TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 
       14.24        16.01        20.09        14.96        22.52        32.61 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J 
       38.27        10.72        18.38        18.71        23.70        14.76 
TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y 
       17.82        21.53        15.02        16.44        22.26        28.54 
TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q 
       10.78        36.66        48.69        20.45        18.64         5.72 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 
       27.52         0.10         6.67        11.54        40.11         0.13 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 
        0.03        16.54         3.75        17.42         6.54        24.26 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
        6.38        40.34        75.19        95.93       106.95       172.77 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
        4.01         5.03        29.85        23.18       122.47         4.57 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       17.29         3.16        22.06        45.99        56.09        57.60 
TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 
        0.23        14.27         0.16        16.24         0.76        44.68 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        6.05        42.74         0.10        31.69        14.96         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-KT-A74X 
       10.55        12.76        20.81        20.71        19.00        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
        4.41        15.16        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84R 
       28.08        24.16        40.83        24.79        33.24        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  FLNB MUTATED FLNB WILD-TYPE 
          0.10           0.03 
  FLNB MUTATED FLNB WILD-TYPE 
        211.17         182.33 
  FLNB MUTATED FLNB WILD-TYPE 
        23.785         16.800 
[1] "0.1 - 211.2 (23.8)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2"  
D163V2, continuous
D163V3, binary
                cls
clus               0   1
  FLNB MUTATED     3   7
  FLNB WILD-TYPE 275 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLNB MUTATED      3    7
  FLNB WILD-TYPE  275  505
                        clus
vv                       FLNB MUTATED FLNB WILD-TYPE
  BRAIN                             3            275
  CENTRAL NERVOUS SYSTEM            7            505
[1] 2 2
[1] FALSE
D163V4, binary
                cls
clus               0   1
  FLNB MUTATED     7   3
  FLNB WILD-TYPE 322 458
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLNB MUTATED      7    3
  FLNB WILD-TYPE  322  458
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  FEMALE            7            322
  MALE              3            458
[1] 2 2
[1] FALSE
D163V5, binary
                cls
clus               0   1
  FLNB MUTATED     3   7
  FLNB WILD-TYPE 229 501
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLNB MUTATED      3    7
  FLNB WILD-TYPE  229  501
     clus
vv    FLNB MUTATED FLNB WILD-TYPE
  NO             3            229
  YES            7            501
[1] 2 2
[1] FALSE
D163V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  FLNB MUTATED             3                             0                3
  FLNB WILD-TYPE         189                             9              127
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  FLNB MUTATED                   1                   0
  FLNB WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  FLNB MUTATED                                 3
  FLNB WILD-TYPE                             262
D163V7, multiclass
                                 clus
vv                                FLNB MUTATED FLNB WILD-TYPE
  ASTROCYTOMA                                3            189
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           3            127
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            3            262
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FLNB MUTATED                                  0     0
  FLNB WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  FLNB MUTATED                           0    10
  FLNB WILD-TYPE                        38   712
D163V8, multiclass
                                  clus
vv                                 FLNB MUTATED FLNB WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                      10            712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D163V9, binary
                cls
clus               0   1
  FLNB MUTATED     0   9
  FLNB WILD-TYPE  35 657
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLNB MUTATED      0    9
  FLNB WILD-TYPE   35  657
                        clus
vv                       FLNB MUTATED FLNB WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            9            657
[1] 2 2
[1] FALSE

Clustering(164) Variable = PAN3 MUTATION ANALYSIS
D164V1, survival
                sevent
clus2              0   1
  PAN3 MUTATED     3   4
  PAN3 WILD-TYPE 450 330
  PAN3 MUTATED PAN3 WILD-TYPE 
             7            780 
  PAN3 MUTATED PAN3 WILD-TYPE 
             4            330 
$`PAN3 MUTATED`
TCGA-02-2486 TCGA-06-0128 TCGA-06-0145 TCGA-14-0789 TCGA-32-4208 TCGA-74-6575 
       20.32        22.72         2.33        11.24        21.14        20.91 
TCGA-DB-A4XH 
       31.63 

$`PAN3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0129 
       15.45         2.70         6.15        20.38         6.94        33.67 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       12.95        25.35        26.70        11.90         0.20        10.29 
TCGA-06-0142 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.20        46.59        12.33        13.94        10.45         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
       10.82        10.65         5.85        11.41        19.66         3.29 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        4.47         3.22        88.14        69.90        73.84        44.58 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       15.42        38.96         7.40         7.63         0.53        15.02 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       24.16         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        40.41 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
       16.57        20.78        26.76        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       12.49         4.93        17.65        12.56        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
       16.64         4.37         0.43        31.50        11.74         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         5.23         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48       120.56         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4209 
       15.02        15.95         8.84        22.78        25.18        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        19.23         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 
        0.20        15.12        12.46         3.45         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64O 
       39.78        37.45        33.57        72.95        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV 
       34.19        13.74        28.27        15.72         0.23        26.04 
TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC 
        0.13        20.22         0.07        27.35         0.10         5.33 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 
        2.70        16.93         1.81        16.14        16.83        21.40 
TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K 
        6.38        17.52        17.65         2.43        10.52        15.35 
TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
       11.05         0.10        56.58        13.45        41.49        45.60 
TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 
       68.32        35.44        39.75        40.01        42.54         6.18 
TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 
       10.55        12.76        20.81        20.71        19.00        42.77 
TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY 
       14.40        14.40         0.23         6.71         7.99         2.37 
TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 
        2.30         4.11         5.88         7.63         0.76         1.28 
TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 
        0.23        10.42        13.25        11.64        10.95         9.01 
TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X 
       13.61         9.60         7.56        12.23        19.20         3.45 
TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X 
        2.37         4.41        15.16         2.53        12.62        15.85 
TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX 
       14.04        19.33        14.83        14.53        13.61        12.23 
TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 
        2.20         9.17        10.29        14.53        16.34        16.73 
TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK 
        1.91        16.50         5.03        11.08        12.99        88.83 
TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z 
       94.03        32.65        59.38        30.87         5.46         9.90 
TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU 
       28.08         2.07        19.59        30.67        62.17        87.12 
TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 
       18.77        41.10        28.14        35.38        36.82        24.39 
TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 
       25.81        29.85        32.61        35.15        98.24        95.93 
TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH 
        5.85       123.65        75.25       135.22        85.55        38.56 
TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP 
       84.99        31.10        19.86        26.47        18.61        18.64 
TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ 
       14.07        36.13         7.92        26.93        23.51        19.99 
TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX 
       20.02         8.19         2.04        20.68        15.06        18.54 
TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 
       28.37        27.16       169.84        10.39        99.06        30.05 
TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 
       98.63        31.59        18.71        20.48        54.77        48.33 
TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F 
       49.32        34.78        65.39        24.92        16.18        59.05 
TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M 
       40.64        30.44        28.08        24.16        40.83        24.79 
TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF 
       33.24        25.38        18.61        14.93        23.80        21.37 
TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM 
       19.69        15.98         2.04        40.41        44.09        36.69 
TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU 
       33.73        31.20        30.05        26.14        25.87        33.93 
TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA 
       61.41        26.99        31.36        43.04        43.20        13.51 
TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 
        0.10         7.89        39.16        20.02        23.47        37.05 
TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 
       16.01        23.21         8.05        51.06        13.32        43.96 
TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       39.88        43.40        45.80        46.88        37.71        20.81 

  PAN3 MUTATED PAN3 WILD-TYPE 
          2.33           0.03 
  PAN3 MUTATED PAN3 WILD-TYPE 
         31.63         211.17 
  PAN3 MUTATED PAN3 WILD-TYPE 
        20.910         16.765 
[1] "2.3 - 31.6 (20.9)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "1.6"
D164V2, continuous
D164V3, binary
                cls
clus               0   1
  PAN3 MUTATED     6   1
  PAN3 WILD-TYPE 272 511
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAN3 MUTATED      6    1
  PAN3 WILD-TYPE  272  511
                        clus
vv                       PAN3 MUTATED PAN3 WILD-TYPE
  BRAIN                             6            272
  CENTRAL NERVOUS SYSTEM            1            511
[1] 2 2
[1] FALSE
D164V4, binary
                cls
clus               0   1
  PAN3 MUTATED     3   4
  PAN3 WILD-TYPE 326 457
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAN3 MUTATED      3    4
  PAN3 WILD-TYPE  326  457
        clus
vv       PAN3 MUTATED PAN3 WILD-TYPE
  FEMALE            3            326
  MALE              4            457
[1] 2 2
[1] FALSE
D164V5, binary
                cls
clus               0   1
  PAN3 MUTATED     2   5
  PAN3 WILD-TYPE 230 503
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAN3 MUTATED      2    5
  PAN3 WILD-TYPE  230  503
     clus
vv    PAN3 MUTATED PAN3 WILD-TYPE
  NO             2            230
  YES            5            503
[1] 2 2
[1] FALSE
D164V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  PAN3 MUTATED             0                             0                1
  PAN3 WILD-TYPE         192                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  PAN3 MUTATED                   0                   0
  PAN3 WILD-TYPE               190                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PAN3 MUTATED                                 6
  PAN3 WILD-TYPE                             259
D164V7, multiclass
                                 clus
vv                                PAN3 MUTATED PAN3 WILD-TYPE
  ASTROCYTOMA                                0            192
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          0            190
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            6            259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PAN3 MUTATED                                  0     0
  PAN3 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PAN3 MUTATED                           0     6
  PAN3 WILD-TYPE                        38   716
D164V8, multiclass
                                  clus
vv                                 PAN3 MUTATED PAN3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       6            716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D164V9, binary
                cls
clus               0   1
  PAN3 MUTATED     0   5
  PAN3 WILD-TYPE  35 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAN3 MUTATED      0    5
  PAN3 WILD-TYPE   35  661
                        clus
vv                       PAN3 MUTATED PAN3 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(165) Variable = CHD8 MUTATION ANALYSIS
D165V1, survival
                sevent
clus2              0   1
  CHD8 MUTATED     4   6
  CHD8 WILD-TYPE 449 328
  CHD8 MUTATED CHD8 WILD-TYPE 
            10            777 
  CHD8 MUTATED CHD8 WILD-TYPE 
             6            328 
$`CHD8 MUTATED`
TCGA-06-1804 TCGA-06-2559 TCGA-06-5410 TCGA-06-5413 TCGA-19-5959 TCGA-26-1442 
       13.61         4.93         3.55         8.81        16.80        31.33 
TCGA-26-6174 TCGA-32-1982 TCGA-HT-A61C TCGA-HW-7487 
        2.33         4.67        17.65        13.45 

$`CHD8 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08        12.49        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        8.35         4.54         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         5.23         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.48       120.56         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        18.02        15.35        14.73 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       12.99        34.92        26.66         3.65        10.62        22.19 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       15.22        10.95        34.92        14.53        14.93         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42        13.78        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        24.23         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5133 
        1.78        14.07        14.96        13.87         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 
        5.49         8.88        18.97         1.58         7.92         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 
       15.39         0.10        19.50         1.18        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       25.18        21.14        20.32         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        19.23         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        15.12        12.46 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        36.85        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03        23.90 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       34.45        18.64        36.20         1.61        17.72        26.30 
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        18.15        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 
        6.67        11.54        40.11         0.13         0.03        16.54 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 
        3.75        17.42         6.54        24.26         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.52         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       56.58        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  CHD8 MUTATED CHD8 WILD-TYPE 
          2.33           0.03 
  CHD8 MUTATED CHD8 WILD-TYPE 
         31.33         211.17 
  CHD8 MUTATED CHD8 WILD-TYPE 
         11.13          16.93 
[1] "2.3 - 31.3 (11.1)"  "0.0 - 211.2 (16.9)"
[1] "hr=" "2.7"
D165V2, continuous
D165V3, binary
                cls
clus               0   1
  CHD8 MUTATED     8   2
  CHD8 WILD-TYPE 270 510
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD8 MUTATED      8    2
  CHD8 WILD-TYPE  270  510
                        clus
vv                       CHD8 MUTATED CHD8 WILD-TYPE
  BRAIN                             8            270
  CENTRAL NERVOUS SYSTEM            2            510
[1] 2 2
[1] FALSE
D165V4, binary
                cls
clus               0   1
  CHD8 MUTATED     5   5
  CHD8 WILD-TYPE 324 456
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD8 MUTATED      5    5
  CHD8 WILD-TYPE  324  456
        clus
vv       CHD8 MUTATED CHD8 WILD-TYPE
  FEMALE            5            324
  MALE              5            456
[1] 2 2
[1] FALSE
D165V5, binary
                cls
clus               0   1
  CHD8 MUTATED     2   6
  CHD8 WILD-TYPE 230 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD8 MUTATED      2    6
  CHD8 WILD-TYPE  230  502
     clus
vv    CHD8 MUTATED CHD8 WILD-TYPE
  NO             2            230
  YES            6            502
[1] 2 2
[1] FALSE
D165V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CHD8 MUTATED             0                             0                0
  CHD8 WILD-TYPE         192                             9              130
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CHD8 MUTATED                   2                   0
  CHD8 WILD-TYPE               188                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  CHD8 MUTATED                                 8
  CHD8 WILD-TYPE                             257
D165V7, multiclass
                                 clus
vv                                CHD8 MUTATED CHD8 WILD-TYPE
  ASTROCYTOMA                                0            192
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           0            130
  OLIGODENDROGLIOMA                          2            188
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            8            257
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CHD8 MUTATED                                  0     0
  CHD8 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CHD8 MUTATED                           0    10
  CHD8 WILD-TYPE                        38   712
D165V8, multiclass
                                  clus
vv                                 CHD8 MUTATED CHD8 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                      10            712
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D165V9, binary
                cls
clus               0   1
  CHD8 MUTATED     0  10
  CHD8 WILD-TYPE  35 656
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD8 MUTATED      0   10
  CHD8 WILD-TYPE   35  656
                        clus
vv                       CHD8 MUTATED CHD8 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO           10            656
[1] 2 2
[1] FALSE

Clustering(166) Variable = TTYH3 MUTATION ANALYSIS
D166V1, survival
                 sevent
clus2               0   1
  TTYH3 MUTATED     3   1
  TTYH3 WILD-TYPE 450 333
  TTYH3 MUTATED TTYH3 WILD-TYPE 
              4             783 
  TTYH3 MUTATED TTYH3 WILD-TYPE 
              1             333 
$`TTYH3 MUTATED`
TCGA-19-5959 TCGA-DB-5276 TCGA-HT-7471 TCGA-TM-A84F 
       16.80        72.92         0.13        59.05 

$`TTYH3 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       47.93        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.49        15.16       211.17        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
       18.38        18.71        23.70        14.76        17.82        21.53 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 
       15.02        16.44        22.26        28.54        10.78        36.66 
TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 
       48.69        20.45        18.64         5.72        27.52         0.10 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
        6.67        11.54        40.11         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       65.39        24.92        16.18        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  TTYH3 MUTATED TTYH3 WILD-TYPE 
           0.13            0.03 
  TTYH3 MUTATED TTYH3 WILD-TYPE 
          72.92          211.17 
  TTYH3 MUTATED TTYH3 WILD-TYPE 
         37.925          16.830 
[1] "0.1 - 72.9 (37.9)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2.3"
D166V2, continuous
D166V3, binary
                 cls
clus                0   1
  TTYH3 MUTATED     1   3
  TTYH3 WILD-TYPE 277 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTYH3 MUTATED      1    3
  TTYH3 WILD-TYPE  277  509
                        clus
vv                       TTYH3 MUTATED TTYH3 WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D166V4, binary
                 cls
clus                0   1
  TTYH3 MUTATED     2   2
  TTYH3 WILD-TYPE 327 459
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTYH3 MUTATED      2    2
  TTYH3 WILD-TYPE  327  459
        clus
vv       TTYH3 MUTATED TTYH3 WILD-TYPE
  FEMALE             2             327
  MALE               2             459
[1] 2 2
[1] FALSE
D166V5, binary
                 cls
clus                0   1
  TTYH3 MUTATED     0   3
  TTYH3 WILD-TYPE 232 505
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTYH3 MUTATED      0    3
  TTYH3 WILD-TYPE  232  505
     clus
vv    TTYH3 MUTATED TTYH3 WILD-TYPE
  NO              0             232
  YES             3             505
[1] 2 2
[1] FALSE
D166V6, continuous
[1] "Remove cluster labels:" "TTYH3 MUTATED"         
clus
  TTYH3 MUTATED TTYH3 WILD-TYPE 
              2             508 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0140      TCGA-06-0141      TCGA-06-0151 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0167      TCGA-06-0168      TCGA-06-0169 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0178      TCGA-06-0184      TCGA-06-0185 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0188      TCGA-06-0192      TCGA-06-0195      TCGA-06-0214 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0216      TCGA-06-0238      TCGA-06-0240      TCGA-06-0241 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0644      TCGA-06-0646      TCGA-06-0648      TCGA-06-0686 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0743      TCGA-06-0744      TCGA-06-0745      TCGA-06-0747 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0750      TCGA-06-0875      TCGA-06-0876      TCGA-06-0878 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-1806      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5299      TCGA-12-5301 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-14-0740      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-4157      TCGA-15-0742      TCGA-19-1390 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-19-2631      TCGA-19-4068      TCGA-19-5947      TCGA-19-5950 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-19-5951      TCGA-19-5952      TCGA-19-5954      TCGA-19-5958 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5219      TCGA-28-5220      TCGA-32-1982 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-32-1986      TCGA-32-2615      TCGA-32-2638      TCGA-32-4213 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-41-2571      TCGA-41-2573      TCGA-41-2575      TCGA-74-6573 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-74-6575      TCGA-74-6577      TCGA-74-6578      TCGA-74-6584 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-76-4925      TCGA-76-4926      TCGA-76-4927      TCGA-76-4928 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-76-4929      TCGA-76-4931      TCGA-76-4932      TCGA-76-4934 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-76-4935      TCGA-76-6191      TCGA-76-6192      TCGA-76-6193 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-76-6280      TCGA-76-6282      TCGA-76-6285      TCGA-76-6286 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-76-6656      TCGA-76-6657      TCGA-76-6661      TCGA-76-6662 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-76-6663      TCGA-76-6664      TCGA-81-5910      TCGA-CS-4938 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-CS-4941      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5395      TCGA-CS-5396 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6290 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-CS-6665      TCGA-CS-6666      TCGA-CS-6667      TCGA-CS-6668 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-CS-6669      TCGA-DB-5274      TCGA-DB-A4XE      TCGA-DB-A64L 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S      TCGA-DB-A64U 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X      TCGA-DB-A75L 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DB-A75O      TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D      TCGA-DH-A66F 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DH-A66G      TCGA-DH-A7UR      TCGA-DH-A7UU      TCGA-DH-A7UV 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853      TCGA-DU-5854 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871      TCGA-DU-5874 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-6396      TCGA-DU-6401      TCGA-DU-6403      TCGA-DU-6404 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-6405      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7013      TCGA-DU-7015 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7294      TCGA-DU-7298 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-7299      TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8165 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A6S2 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-A6S6      TCGA-DU-A6S7      TCGA-DU-A6S8      TCGA-DU-A76R 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-A7T6      TCGA-DU-A7T8      TCGA-DU-A7TA      TCGA-DU-A7TB 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-DU-A7TC      TCGA-DU-A7TD      TCGA-DU-A7TG      TCGA-E1-5302 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-A7YE      TCGA-E1-A7YH      TCGA-E1-A7YI      TCGA-E1-A7YJ 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-A7YK      TCGA-E1-A7YL      TCGA-E1-A7YM      TCGA-E1-A7YN 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-A7YO      TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z4 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-E1-A7Z6      TCGA-FG-5963      TCGA-FG-5965      TCGA-FG-6688 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7636 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-FG-7638      TCGA-FG-8181      TCGA-FG-8185      TCGA-FG-8186 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-A4MT 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A60J      TCGA-FG-A60L 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-FG-A6J1      TCGA-FG-A6J3      TCGA-FG-A711      TCGA-FG-A713 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-FG-A87Q      TCGA-HT-7468      TCGA-HT-7470      TCGA-HT-7475 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7611      TCGA-HT-7686 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-7689      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7858 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7884      TCGA-HT-8013      TCGA-HT-8105 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-8113      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R7 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-A5RA      TCGA-HT-A5RC      TCGA-HT-A615      TCGA-HT-A617 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-A618      TCGA-HT-A61A      TCGA-HT-A61B      TCGA-HT-A61C 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-HT-A74L      TCGA-IK-7675      TCGA-KT-A74X      TCGA-KT-A7W1 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-P5-A5F0      TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-P5-A731      TCGA-QH-A65R      TCGA-QH-A65S      TCGA-QH-A65V 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS      TCGA-QH-A6CU 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX      TCGA-QH-A6CY 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-QH-A6CZ      TCGA-QH-A6X3      TCGA-QH-A6X4      TCGA-QH-A6X5 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-RY-A83Y      TCGA-RY-A840 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-RY-A845      TCGA-RY-A847      TCGA-S9-A6TS      TCGA-S9-A6TU 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A6TV      TCGA-S9-A6TW      TCGA-S9-A6TX      TCGA-S9-A6TY 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A6TZ      TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U2 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A6U5      TCGA-S9-A6U6      TCGA-S9-A6U8      TCGA-S9-A6UA 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A6UB      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WI      TCGA-S9-A6WL      TCGA-S9-A6WM 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A6WN      TCGA-S9-A6WO      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IX      TCGA-S9-A7IY 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A7IZ      TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A7J3      TCGA-S9-A7QW      TCGA-S9-A7QX      TCGA-S9-A7QY 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R2      TCGA-S9-A7R3 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A7R4      TCGA-S9-A7R7      TCGA-S9-A7R8      TCGA-S9-A89V 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-S9-A89Z      TCGA-TM-A7C3      TCGA-TM-A7C4      TCGA-TM-A7C5 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TM-A7CA      TCGA-TM-A7CF      TCGA-TM-A84B      TCGA-TM-A84C 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TM-A84G      TCGA-TM-A84H      TCGA-TM-A84I      TCGA-TM-A84J 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TM-A84L      TCGA-TM-A84M      TCGA-TM-A84O      TCGA-TM-A84Q 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TM-A84T      TCGA-TQ-A7RG 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TQ-A7RK      TCGA-TQ-A7RM      TCGA-TQ-A7RN      TCGA-TQ-A7RO 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TQ-A7RP      TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-TQ-A7RU      TCGA-TQ-A7RV      TCGA-TQ-A7RW      TCGA-TQ-A8XE 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-VM-A8C8      TCGA-VM-A8CA      TCGA-VM-A8CD      TCGA-VM-A8CE 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
     TCGA-VM-A8CF      TCGA-VM-A8CH      TCGA-WY-A858      TCGA-WY-A859 
"TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" "TTYH3 WILD-TYPE" 
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  TTYH3 MUTATED             1                             0                1
  TTYH3 WILD-TYPE         191                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  TTYH3 MUTATED                   1                   0
  TTYH3 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TTYH3 MUTATED                                 1
  TTYH3 WILD-TYPE                             264
D166V7, multiclass
                                 clus
vv                                TTYH3 MUTATED TTYH3 WILD-TYPE
  ASTROCYTOMA                                 1             191
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TTYH3 MUTATED                                  0     0
  TTYH3 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  TTYH3 MUTATED                           0     4
  TTYH3 WILD-TYPE                        38   718
D166V8, multiclass
                                  clus
vv                                 TTYH3 MUTATED TTYH3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        4             718
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D166V9, binary
                 cls
clus                0   1
  TTYH3 MUTATED     0   4
  TTYH3 WILD-TYPE  35 662
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTYH3 MUTATED      0    4
  TTYH3 WILD-TYPE   35  662
                        clus
vv                       TTYH3 MUTATED TTYH3 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             4             662
[1] 2 2
[1] FALSE

Clustering(167) Variable = SLFN11 MUTATION ANALYSIS
D167V1, survival
                  sevent
clus2                0   1
  SLFN11 MUTATED     4   1
  SLFN11 WILD-TYPE 449 333
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               5              782 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               1              333 
$`SLFN11 MUTATED`
TCGA-32-1986 TCGA-DU-6392 TCGA-FG-7634 TCGA-HT-7690 TCGA-TQ-A7RR 
       12.69       211.17        15.35         0.10        25.87 

$`SLFN11 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       41.33        18.44        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       31.69        14.96         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 
       15.72         0.23        26.04         0.13        20.22         0.07 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       26.14        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  SLFN11 MUTATED SLFN11 WILD-TYPE 
            0.10             0.03 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
          211.17           182.33 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
           15.35            16.83 
[1] "0.1 - 211.2 (15.3)" "0.0 - 182.3 (16.8)"
[1] "hr=" "3.8"
D167V2, continuous
D167V3, binary
                  cls
clus                 0   1
  SLFN11 MUTATED     1   4
  SLFN11 WILD-TYPE 277 508
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLFN11 MUTATED      1    4
  SLFN11 WILD-TYPE  277  508
                        clus
vv                       SLFN11 MUTATED SLFN11 WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM              4              508
[1] 2 2
[1] FALSE
D167V4, binary
                  cls
clus                 0   1
  SLFN11 MUTATED     1   4
  SLFN11 WILD-TYPE 328 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLFN11 MUTATED      1    4
  SLFN11 WILD-TYPE  328  457
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  FEMALE              1              328
  MALE                4              457
[1] 2 2
[1] FALSE
D167V5, binary
                  cls
clus                 0   1
  SLFN11 MUTATED     2   3
  SLFN11 WILD-TYPE 230 505
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLFN11 MUTATED      2    3
  SLFN11 WILD-TYPE  230  505
     clus
vv    SLFN11 MUTATED SLFN11 WILD-TYPE
  NO               2              230
  YES              3              505
[1] 2 2
[1] FALSE
D167V6, continuous
[1] "Remove cluster labels:" "SLFN11 MUTATED"        
clus
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               2              508 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0126       TCGA-06-0128       TCGA-06-0129       TCGA-06-0130 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0139       TCGA-06-0140       TCGA-06-0141       TCGA-06-0151 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0167       TCGA-06-0168       TCGA-06-0169 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0174       TCGA-06-0178       TCGA-06-0184       TCGA-06-0185 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0188       TCGA-06-0192       TCGA-06-0195       TCGA-06-0214 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0216       TCGA-06-0238       TCGA-06-0240       TCGA-06-0241 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0644       TCGA-06-0646       TCGA-06-0648       TCGA-06-0686 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0743       TCGA-06-0744       TCGA-06-0745       TCGA-06-0747 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0750       TCGA-06-0875       TCGA-06-0876       TCGA-06-0878 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-1806       TCGA-06-2557       TCGA-06-2558       TCGA-06-2559 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-2561       TCGA-06-2562       TCGA-06-2563       TCGA-06-2564 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-2565       TCGA-06-2567       TCGA-06-2569       TCGA-06-2570 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-5408       TCGA-06-5410       TCGA-06-5411       TCGA-06-5412 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-5413       TCGA-06-5414       TCGA-06-5415       TCGA-06-5417 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-5418       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6695       TCGA-06-6697 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-06-6700       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5299       TCGA-12-5301 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-14-0740       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-4157       TCGA-15-0742       TCGA-19-1390 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-19-2631       TCGA-19-4068       TCGA-19-5947       TCGA-19-5950 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-19-5951       TCGA-19-5952       TCGA-19-5954       TCGA-19-5958 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1442       TCGA-26-5132 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-26-5133       TCGA-26-5134       TCGA-26-5139       TCGA-26-6173 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-2502       TCGA-28-2509 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-28-2513       TCGA-28-2514       TCGA-28-5204       TCGA-28-5207 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-28-5208       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5219       TCGA-28-5220 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-32-1982       TCGA-32-2615       TCGA-32-2638       TCGA-32-4213 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-41-2571       TCGA-41-2573       TCGA-41-2575       TCGA-74-6573 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-74-6575       TCGA-74-6577       TCGA-74-6578       TCGA-74-6584 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-76-4925       TCGA-76-4926       TCGA-76-4927       TCGA-76-4928 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-76-4929       TCGA-76-4931       TCGA-76-4932       TCGA-76-4934 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-76-4935       TCGA-76-6191       TCGA-76-6192       TCGA-76-6193 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-76-6280       TCGA-76-6282       TCGA-76-6285       TCGA-76-6286 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-76-6656       TCGA-76-6657       TCGA-76-6661       TCGA-76-6662 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-76-6663       TCGA-76-6664       TCGA-81-5910       TCGA-CS-4938 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-CS-4941       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5395       TCGA-CS-5396 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6290 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-CS-6665       TCGA-CS-6666       TCGA-CS-6667       TCGA-CS-6668 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-CS-6669       TCGA-DB-5274       TCGA-DB-A4XE       TCGA-DB-A64L 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DB-A64Q       TCGA-DB-A64R       TCGA-DB-A64S       TCGA-DB-A64U 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DB-A64V       TCGA-DB-A64W       TCGA-DB-A64X       TCGA-DB-A75L 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DB-A75O       TCGA-DH-5140       TCGA-DH-5142       TCGA-DH-5143 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DH-5144       TCGA-DH-A66B       TCGA-DH-A66D       TCGA-DH-A66F 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DH-A66G       TCGA-DH-A7UR       TCGA-DH-A7UU       TCGA-DH-A7UV 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-5851       TCGA-DU-5852       TCGA-DU-5853       TCGA-DU-5854 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-5855       TCGA-DU-5870       TCGA-DU-5871       TCGA-DU-5874 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-6396       TCGA-DU-6401       TCGA-DU-6403       TCGA-DU-6404 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-6405       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7011       TCGA-DU-7013       TCGA-DU-7015 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7294       TCGA-DU-7298 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-7299       TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-7304       TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-8161       TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8165 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TU       TCGA-DU-A5TW       TCGA-DU-A6S2 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-A6S6       TCGA-DU-A6S7       TCGA-DU-A6S8       TCGA-DU-A76R 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-A7T6       TCGA-DU-A7T8       TCGA-DU-A7TA       TCGA-DU-A7TB 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-DU-A7TC       TCGA-DU-A7TD       TCGA-DU-A7TG       TCGA-E1-5302 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-A7YE       TCGA-E1-A7YH       TCGA-E1-A7YI       TCGA-E1-A7YJ 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-A7YK       TCGA-E1-A7YL       TCGA-E1-A7YM       TCGA-E1-A7YN 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-A7YO       TCGA-E1-A7YQ       TCGA-E1-A7YS       TCGA-E1-A7YV 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-A7YW       TCGA-E1-A7YY       TCGA-E1-A7Z2       TCGA-E1-A7Z4 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-E1-A7Z6       TCGA-FG-5963       TCGA-FG-5965       TCGA-FG-6688 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-FG-7638       TCGA-FG-8181       TCGA-FG-8185       TCGA-FG-8186 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-A4MT 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-FG-A60L 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-FG-A6J1       TCGA-FG-A6J3       TCGA-FG-A711       TCGA-FG-A713 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-FG-A87Q       TCGA-HT-7468       TCGA-HT-7470       TCGA-HT-7475 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7485 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7609       TCGA-HT-7611       TCGA-HT-7686 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-7689       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7858 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7884       TCGA-HT-8013       TCGA-HT-8105 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-8113       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R7 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-A5RA       TCGA-HT-A5RC       TCGA-HT-A615       TCGA-HT-A617 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-A618       TCGA-HT-A61A       TCGA-HT-A61B       TCGA-HT-A61C 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-HT-A74L       TCGA-IK-7675       TCGA-KT-A74X       TCGA-KT-A7W1 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-P5-A5F0       TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-P5-A731       TCGA-QH-A65R       TCGA-QH-A65S       TCGA-QH-A65V 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-QH-A65X       TCGA-QH-A65Z       TCGA-QH-A6CS       TCGA-QH-A6CU 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-QH-A6CV       TCGA-QH-A6CW       TCGA-QH-A6CX       TCGA-QH-A6CY 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-QH-A6CZ       TCGA-QH-A6X3       TCGA-QH-A6X4       TCGA-QH-A6X5 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-QH-A6X8       TCGA-QH-A6X9       TCGA-QH-A6XA       TCGA-QH-A6XC 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-QH-A86X       TCGA-QH-A870       TCGA-RY-A83Y       TCGA-RY-A840 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-RY-A845       TCGA-RY-A847       TCGA-S9-A6TS       TCGA-S9-A6TU 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A6TV       TCGA-S9-A6TW       TCGA-S9-A6TX       TCGA-S9-A6TY 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A6TZ       TCGA-S9-A6U0       TCGA-S9-A6U1       TCGA-S9-A6U2 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A6U5       TCGA-S9-A6U6       TCGA-S9-A6U8       TCGA-S9-A6UA 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A6UB       TCGA-S9-A6WD       TCGA-S9-A6WE       TCGA-S9-A6WG 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A6WH       TCGA-S9-A6WI       TCGA-S9-A6WL       TCGA-S9-A6WM 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A6WN       TCGA-S9-A6WO       TCGA-S9-A6WP       TCGA-S9-A6WQ 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A7IQ       TCGA-S9-A7IS       TCGA-S9-A7IX       TCGA-S9-A7IY 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A7IZ       TCGA-S9-A7J0       TCGA-S9-A7J1       TCGA-S9-A7J2 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A7J3       TCGA-S9-A7QW       TCGA-S9-A7QX       TCGA-S9-A7QY 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A7QZ       TCGA-S9-A7R1       TCGA-S9-A7R2       TCGA-S9-A7R3 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A7R4       TCGA-S9-A7R7       TCGA-S9-A7R8       TCGA-S9-A89V 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-S9-A89Z       TCGA-TM-A7C3       TCGA-TM-A7C4       TCGA-TM-A7C5 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TM-A7CA       TCGA-TM-A7CF       TCGA-TM-A84B       TCGA-TM-A84C 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TM-A84F       TCGA-TM-A84G       TCGA-TM-A84H       TCGA-TM-A84I 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TM-A84J       TCGA-TM-A84L       TCGA-TM-A84M       TCGA-TM-A84O 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TM-A84Q       TCGA-TM-A84R       TCGA-TM-A84S       TCGA-TM-A84T 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TQ-A7RG       TCGA-TQ-A7RK       TCGA-TQ-A7RM       TCGA-TQ-A7RN 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TQ-A7RO       TCGA-TQ-A7RP       TCGA-TQ-A7RQ       TCGA-TQ-A7RS 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-TQ-A7RU       TCGA-TQ-A7RV       TCGA-TQ-A7RW       TCGA-TQ-A8XE 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-VM-A8C8       TCGA-VM-A8CA       TCGA-VM-A8CD       TCGA-VM-A8CE 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
      TCGA-VM-A8CF       TCGA-VM-A8CH       TCGA-WY-A858       TCGA-WY-A859 
"SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" "SLFN11 WILD-TYPE" 
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  SLFN11 MUTATED             1                             0                2
  SLFN11 WILD-TYPE         191                             9              128
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  SLFN11 MUTATED                   1                   0
  SLFN11 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  SLFN11 MUTATED                                 1
  SLFN11 WILD-TYPE                             264
D167V7, multiclass
                                 clus
vv                                SLFN11 MUTATED SLFN11 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             2              128
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SLFN11 MUTATED                                  0     0
  SLFN11 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  SLFN11 MUTATED                           0     5
  SLFN11 WILD-TYPE                        38   717
D167V8, multiclass
                                  clus
vv                                 SLFN11 MUTATED SLFN11 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         5              717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D167V9, binary
                  cls
clus                 0   1
  SLFN11 MUTATED     1   4
  SLFN11 WILD-TYPE  34 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLFN11 MUTATED      1    4
  SLFN11 WILD-TYPE   34  662
                        clus
vv                       SLFN11 MUTATED SLFN11 WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(168) Variable = CIB1 MUTATION ANALYSIS
D168V1, survival
                sevent
clus2              0   1
  CIB1 MUTATED     4   1
  CIB1 WILD-TYPE 449 333
  CIB1 MUTATED CIB1 WILD-TYPE 
             5            782 
  CIB1 MUTATED CIB1 WILD-TYPE 
             1            333 
$`CIB1 MUTATED`
TCGA-19-5954 TCGA-HT-7477 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-TM-A7C5 
       12.10        24.26        20.22         0.07        49.32 

$`CIB1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
        8.02        18.90         4.73         1.78        14.07        16.80 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       14.96        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 
       18.94        17.49        15.16       211.17        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 
       16.54         3.75        17.42         6.54         6.38        40.34 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
       75.19        95.93       106.95       172.77         4.01         5.03 
TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 
       29.85        23.18       122.47         4.57        17.29         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 
       22.06        45.99        56.09        57.60         0.23        14.27 
TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 
        0.16        16.24         0.76        44.68         6.05        42.74 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        0.10        31.69        14.96         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 
       17.52         6.90        14.53        39.48        19.23        39.09 
TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 
        0.23        50.63         0.49        23.61        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 
        0.13         3.68         5.33        35.47         3.72        11.28 
TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       31.43         1.64        16.24         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       27.35         0.10         5.33         2.70        16.93         1.81 
TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C 
       16.14        16.83        21.40         6.38        17.52        17.65 
TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 
        2.43        10.52        15.35        11.05         0.10        56.58 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 
       13.45        41.49        45.60        68.32        35.44        39.75 
TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL 
       40.01        42.54         6.18        10.55        12.76        20.81 
TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV 
       20.71        19.00        42.77        14.40        14.40         0.23 
TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 
        6.71         7.99         2.37         2.30         4.11         5.88 
TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X 
        7.63         0.76         1.28         0.23        10.42        13.25 
TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 
       11.64        10.95         9.01        13.61         9.60         7.56 
TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
       12.23        19.20         3.45         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B 
       20.48        54.77        48.33        34.78        65.39        24.92 
TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J 
       16.18        59.05        40.64        30.44        28.08        24.16 
TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S 
       40.83        24.79        33.24        25.38        18.61        14.93 
TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ 
       23.80        21.37        19.69        15.98         2.04        40.41 
TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ 
       44.09        36.69        33.73        31.20        30.05        26.14 
TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 
       25.87        33.93        61.41        26.99        31.36        43.04 
TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF 
       43.20        13.51         0.10         7.89        39.16        20.02 
TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 
       23.47        37.05        16.01        23.21         8.05        51.06 
TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C 
       13.32        43.96        39.88        43.40        45.80        46.88 
TCGA-WY-A85D TCGA-WY-A85E 
       37.71        20.81 

  CIB1 MUTATED CIB1 WILD-TYPE 
          0.07           0.03 
  CIB1 MUTATED CIB1 WILD-TYPE 
         49.32         211.17 
  CIB1 MUTATED CIB1 WILD-TYPE 
        20.220         16.815 
[1] "0.1 - 49.3 (20.2)"  "0.0 - 211.2 (16.8)"
[1] "hr=" "2"  
D168V2, continuous
D168V3, binary
                cls
clus               0   1
  CIB1 MUTATED     1   4
  CIB1 WILD-TYPE 277 508
[1] "tbl2"
                cls
clus             [,1] [,2]
  CIB1 MUTATED      1    4
  CIB1 WILD-TYPE  277  508
                        clus
vv                       CIB1 MUTATED CIB1 WILD-TYPE
  BRAIN                             1            277
  CENTRAL NERVOUS SYSTEM            4            508
[1] 2 2
[1] FALSE
D168V4, binary
                cls
clus               0   1
  CIB1 MUTATED     3   2
  CIB1 WILD-TYPE 326 459
[1] "tbl2"
                cls
clus             [,1] [,2]
  CIB1 MUTATED      3    2
  CIB1 WILD-TYPE  326  459
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  FEMALE            3            326
  MALE              2            459
[1] 2 2
[1] FALSE
D168V5, binary
                cls
clus               0   1
  CIB1 MUTATED     1   3
  CIB1 WILD-TYPE 231 505
[1] "tbl2"
                cls
clus             [,1] [,2]
  CIB1 MUTATED      1    3
  CIB1 WILD-TYPE  231  505
     clus
vv    CIB1 MUTATED CIB1 WILD-TYPE
  NO             1            231
  YES            3            505
[1] 2 2
[1] FALSE
D168V6, continuous
                vv
clus             ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  CIB1 MUTATED             2                             0                1
  CIB1 WILD-TYPE         190                             9              129
                vv
clus             OLIGODENDROGLIOMA TREATED PRIMARY GBM
  CIB1 MUTATED                   1                   0
  CIB1 WILD-TYPE               189                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  CIB1 MUTATED                                 1
  CIB1 WILD-TYPE                             264
D168V7, multiclass
                                 clus
vv                                CIB1 MUTATED CIB1 WILD-TYPE
  ASTROCYTOMA                                2            190
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  OLIGOASTROCYTOMA                           1            129
  OLIGODENDROGLIOMA                          1            189
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            1            264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CIB1 MUTATED                                  0     0
  CIB1 WILD-TYPE                                1    13
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CIB1 MUTATED                           0     5
  CIB1 WILD-TYPE                        38   717
D168V8, multiclass
                                  clus
vv                                 CIB1 MUTATED CIB1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             13
  BLACK OR AFRICAN AMERICAN                   0             38
  WHITE                                       5            717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D168V9, binary
                cls
clus               0   1
  CIB1 MUTATED     0   5
  CIB1 WILD-TYPE  35 661
[1] "tbl2"
                cls
clus             [,1] [,2]
  CIB1 MUTATED      0    5
  CIB1 WILD-TYPE   35  661
                        clus
vv                       CIB1 MUTATED CIB1 WILD-TYPE
  HISPANIC OR LATINO                0             35
  NOT HISPANIC OR LATINO            5            661
[1] 2 2
[1] FALSE

Clustering(169) Variable = GLYAT MUTATION ANALYSIS
D169V1, survival
                 sevent
clus2               0   1
  GLYAT MUTATED     4   1
  GLYAT WILD-TYPE 449 333
  GLYAT MUTATED GLYAT WILD-TYPE 
              5             782 
  GLYAT MUTATED GLYAT WILD-TYPE 
              1             333 
$`GLYAT MUTATED`
TCGA-19-5960 TCGA-CS-4943 TCGA-DU-6392 TCGA-S9-A6UB TCGA-WY-A85D 
       14.96        18.15       211.17       123.65        37.71 

$`GLYAT WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       16.80        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88        18.97         1.58         7.92         2.33         5.06 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        24.23        40.54        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        18.08        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5390 
       26.30         4.70         7.69        43.89        10.62        64.64 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
       40.18         0.10        21.01         9.96         6.38        17.69 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
       23.84        17.95        12.43        46.95         7.56        49.94 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
       49.12         6.61       122.73        81.96        75.25        47.93 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
       72.92        50.86        91.13        44.52        36.56        78.28 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
       46.42        18.84        30.21        46.72        39.78        37.45 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
       33.57        72.95        31.63        24.20        25.48        30.12 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
        5.98        31.40        27.45        27.81        29.23        14.40 
TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P 
       18.51        12.10        11.24        17.88        30.74        16.18 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 
       19.96        31.82        63.88        46.06         8.02        30.21 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US 
       42.05        27.81        17.19        17.19        54.25        23.21 
TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 
       17.46        13.71        18.61        18.02        14.56        17.46 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 
       17.49        15.16        52.11        22.42        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.75         1.22        87.45         7.04        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.83        94.52       114.08         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
        2.40        11.47        62.96       156.23       154.36        14.99 
TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 
      105.21         6.54         8.84        90.77        30.67        26.30 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 
       10.36         7.96        94.32        18.94        44.02        62.01 
TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 
       25.91        60.30        23.31        41.98         2.76         5.10 
TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 
       23.74        14.60        20.68        21.40        19.13        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6WD 
       32.61        35.15        98.24        95.93         5.85        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85E 
       46.88        20.81 

  GLYAT MUTATED GLYAT WILD-TYPE 
          14.96            0.03 
  GLYAT MUTATED GLYAT WILD-TYPE 
         211.17          182.33 
  GLYAT MUTATED GLYAT WILD-TYPE 
         37.710          16.765 
[1] "15.0 - 211.2 (37.7)" "0.0 - 182.3 (16.8)" 
[1] "hr=" "5.7"
D169V2, continuous
D169V3, binary
                 cls
clus                0   1
  GLYAT MUTATED     1   4
  GLYAT WILD-TYPE 277 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GLYAT MUTATED      1    4
  GLYAT WILD-TYPE  277  508
                        clus
vv                       GLYAT MUTATED GLYAT WILD-TYPE
  BRAIN                              1             277
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D169V4, binary
                 cls
clus                0   1
  GLYAT MUTATED     1   4
  GLYAT WILD-TYPE 328 457
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GLYAT MUTATED      1    4
  GLYAT WILD-TYPE  328  457
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  FEMALE             1             328
  MALE               4             457
[1] 2 2
[1] FALSE
D169V5, binary
                 cls
clus                0   1
  GLYAT MUTATED     3   2
  GLYAT WILD-TYPE 229 506
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GLYAT MUTATED      3    2
  GLYAT WILD-TYPE  229  506
     clus
vv    GLYAT MUTATED GLYAT WILD-TYPE
  NO              3             229
  YES             2             506
[1] 2 2
[1] FALSE
D169V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  GLYAT MUTATED             2                             0                1
  GLYAT WILD-TYPE         190                             9              129
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  GLYAT MUTATED                   1                   0
  GLYAT WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  GLYAT MUTATED                                 1
  GLYAT WILD-TYPE                             264
D169V7, multiclass
                                 clus
vv                                GLYAT MUTATED GLYAT WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            1             129
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             1             264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GLYAT MUTATED                                  0     0
  GLYAT WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  GLYAT MUTATED                           0     5
  GLYAT WILD-TYPE                        38   717
D169V8, multiclass
                                  clus
vv                                 GLYAT MUTATED GLYAT WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        5             717
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D169V9, binary
                 cls
clus                0   1
  GLYAT MUTATED     0   3
  GLYAT WILD-TYPE  35 663
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GLYAT MUTATED      0    3
  GLYAT WILD-TYPE   35  663
                        clus
vv                       GLYAT MUTATED GLYAT WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             3             663
[1] 2 2
[1] FALSE

Clustering(170) Variable = IGFN1 MUTATION ANALYSIS
D170V1, survival
                 sevent
clus2               0   1
  IGFN1 MUTATED     7   2
  IGFN1 WILD-TYPE 446 332
  IGFN1 MUTATED IGFN1 WILD-TYPE 
              9             778 
  IGFN1 MUTATED IGFN1 WILD-TYPE 
              2             332 
$`IGFN1 MUTATED`
TCGA-06-6697 TCGA-06-6700 TCGA-12-0618 TCGA-19-4068 TCGA-28-5213 TCGA-32-4213 
       12.85         4.77        12.99         4.50        31.27        19.86 
TCGA-DU-6392 TCGA-HT-8564 TCGA-HT-A61C 
      211.17        15.72        17.65 

$`IGFN1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-08-0386 
        7.36         8.32         4.77         1.55         4.96        18.02 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       15.35        14.73        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        17.19         8.02        18.90         4.73        12.10 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78        14.07        16.80        14.96        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88        18.97         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         5.06        16.60         9.86        24.23 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       40.54        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       18.08        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        23.44        11.01        13.64         5.16        22.68 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        25.18        21.14        20.32 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
        3.72        12.59        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G 
        8.02        30.21        42.05        27.81        17.19        17.19 
TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 
       54.25        23.21        17.46        13.71        18.61        18.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
       14.56        17.46         6.74        13.38         8.45         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
      182.33        18.94        17.49        15.16        52.11        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       49.02        75.16        46.06        65.75         1.22        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.04        11.64       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 
       11.28        31.43         1.64        16.24         9.40        63.55 
TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
        0.10        37.87        33.01        12.23         6.25         0.10 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
        0.46         2.50         5.56        13.78         0.23        29.59 
TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       34.19        13.74        28.27         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.52         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  IGFN1 MUTATED IGFN1 WILD-TYPE 
           4.50            0.03 
  IGFN1 MUTATED IGFN1 WILD-TYPE 
         211.17          182.33 
  IGFN1 MUTATED IGFN1 WILD-TYPE 
          15.72           16.83 
[1] "4.5 - 211.2 (15.7)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.5"
D170V2, continuous
D170V3, binary
                 cls
clus                0   1
  IGFN1 MUTATED     6   3
  IGFN1 WILD-TYPE 272 509
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IGFN1 MUTATED      6    3
  IGFN1 WILD-TYPE  272  509
                        clus
vv                       IGFN1 MUTATED IGFN1 WILD-TYPE
  BRAIN                              6             272
  CENTRAL NERVOUS SYSTEM             3             509
[1] 2 2
[1] FALSE
D170V4, binary
                 cls
clus                0   1
  IGFN1 MUTATED     3   6
  IGFN1 WILD-TYPE 326 455
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IGFN1 MUTATED      3    6
  IGFN1 WILD-TYPE  326  455
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  FEMALE             3             326
  MALE               6             455
[1] 2 2
[1] FALSE
D170V5, binary
                 cls
clus                0   1
  IGFN1 MUTATED     1   8
  IGFN1 WILD-TYPE 231 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IGFN1 MUTATED      1    8
  IGFN1 WILD-TYPE  231  500
     clus
vv    IGFN1 MUTATED IGFN1 WILD-TYPE
  NO              1             231
  YES             8             500
[1] 2 2
[1] FALSE
D170V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  IGFN1 MUTATED             2                             0                0
  IGFN1 WILD-TYPE         190                             9              130
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  IGFN1 MUTATED                   1                   0
  IGFN1 WILD-TYPE               189                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  IGFN1 MUTATED                                 6
  IGFN1 WILD-TYPE                             259
D170V7, multiclass
                                 clus
vv                                IGFN1 MUTATED IGFN1 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            0             130
  OLIGODENDROGLIOMA                           1             189
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             6             259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  IGFN1 MUTATED                                  0     0
  IGFN1 WILD-TYPE                                1    13
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  IGFN1 MUTATED                           0     9
  IGFN1 WILD-TYPE                        38   713
D170V8, multiclass
                                  clus
vv                                 IGFN1 MUTATED IGFN1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              13
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        9             713
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D170V9, binary
                 cls
clus                0   1
  IGFN1 MUTATED     1   7
  IGFN1 WILD-TYPE  34 659
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IGFN1 MUTATED      1    7
  IGFN1 WILD-TYPE   34  659
                        clus
vv                       IGFN1 MUTATED IGFN1 WILD-TYPE
  HISPANIC OR LATINO                 1              34
  NOT HISPANIC OR LATINO             7             659
[1] 2 2
[1] FALSE

Clustering(171) Variable = LRRC55 MUTATION ANALYSIS
D171V1, survival
                  sevent
clus2                0   1
  LRRC55 MUTATED     7   2
  LRRC55 WILD-TYPE 446 332
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               9              778 
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               2              332 
$`LRRC55 MUTATED`
TCGA-06-0185 TCGA-06-0214 TCGA-06-0216 TCGA-06-0875 TCGA-06-5414 TCGA-14-1450 
       73.84        15.02        24.16        43.46         8.98        58.78 
TCGA-DH-A66G TCGA-DU-6392 TCGA-FG-A60J 
       17.19       211.17        14.76 

$`LRRC55 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       69.90        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.53         0.72        13.64        13.32        20.42        48.69 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.62         5.75         5.75         9.80         2.10        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       14.20        26.40        46.88         7.86         2.70         2.70 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        46.19         5.65         7.17        40.41        16.57 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
       20.78        26.76        13.61        15.32         1.08        12.49 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93        17.65        12.56        30.64         5.95        16.64 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.74         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.55         5.10         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         5.23         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
      120.56         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        18.02        15.35        14.73        12.99 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       34.92        26.66         3.65        10.62        22.19        15.22 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.92        14.53        14.93         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.50         4.80         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        36.85        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03        23.90        34.45        18.64        36.20         1.61 
TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 
       17.72        26.30         4.70         7.69        43.89        18.15 
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 
       10.62        64.64        40.18         0.10        21.01         9.96 
TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        6.38        17.69        23.84        17.95        12.43        46.95 
TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 
        7.56        49.94        49.12         6.61       122.73        81.96 
TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 
       75.25        47.93        72.92        50.86        91.13        44.52 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC 
       36.56        78.28        46.42        18.84        30.21        46.72 
TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       39.78        37.45        33.57        72.95        31.63        24.20 
TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U 
       25.48        30.12         5.98        31.40        27.45        27.81 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M 
       29.23        14.40        18.51        12.10        11.24        17.88 
TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       30.74        16.18        19.96        31.82        63.88        46.06 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A7UR 
        8.02        30.21        42.05        27.81        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK 
       14.30        29.13        93.21         3.65        19.46        12.43 
TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS 
       16.18        21.30        23.90        75.02        51.88        15.32 
TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 
        0.76        32.45        36.82       146.14        13.08        73.48 
TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 
      145.05        32.35        39.48         0.23         0.20        47.77 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
       25.48        52.21        36.82        18.77        14.93        42.54 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
       41.33        18.44        15.35        17.88        40.08        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
       20.61        20.09        28.34        13.68        14.24        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
       20.09        14.96        22.52        32.61        38.27        10.72 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.38        18.71        23.70        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 
        7.56        12.23        19.20         3.45         2.37         4.41 
TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS 
       15.16         2.53        12.62        15.85        14.04        19.33 
TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ 
       14.83        14.53        13.61        12.23         2.20         9.17 
TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA 
       10.29        14.53        16.34        16.73         1.91        16.50 
TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO 
        5.03        11.08        12.99        88.83        94.03        32.65 
TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 
       59.38        30.87         5.46         9.90        28.08         2.07 
TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW 
       19.59        30.67        62.17        87.12        18.77        41.10 
TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 
       28.14        35.38        36.82        24.39        25.81        29.85 
TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB 
       32.61        35.15        98.24        95.93         5.85       123.65 
TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL 
       75.25       135.22        85.55        38.56        84.99        31.10 
TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ 
       19.86        26.47        18.61        18.64        14.07        36.13 
TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 
        7.92        26.93        23.51        19.99        20.02         8.19 
TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ 
        2.04        20.68        15.06        18.54        28.37        27.16 
TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 
      169.84        10.39        99.06        30.05        98.63        31.59 
TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA 
       18.71        20.48        54.77        48.33        49.32        34.78 
TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H 
       65.39        24.92        16.18        59.05        40.64        30.44 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  LRRC55 MUTATED LRRC55 WILD-TYPE 
            8.98             0.03 
  LRRC55 MUTATED LRRC55 WILD-TYPE 
          211.17           182.33 
  LRRC55 MUTATED LRRC55 WILD-TYPE 
          24.160           16.765 
[1] "9.0 - 211.2 (24.2)" "0.0 - 182.3 (16.8)"
[1] "hr=" "3.6"
D171V2, continuous
D171V3, binary
                  cls
clus                 0   1
  LRRC55 MUTATED     6   3
  LRRC55 WILD-TYPE 272 509
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC55 MUTATED      6    3
  LRRC55 WILD-TYPE  272  509
                        clus
vv                       LRRC55 MUTATED LRRC55 WILD-TYPE
  BRAIN                               6              272
  CENTRAL NERVOUS SYSTEM              3              509
[1] 2 2
[1] FALSE
D171V4, binary
                  cls
clus                 0   1
  LRRC55 MUTATED     6   3
  LRRC55 WILD-TYPE 323 458
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC55 MUTATED      6    3
  LRRC55 WILD-TYPE  323  458
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  FEMALE              6              323
  MALE                3              458
[1] 2 2
[1] FALSE
D171V5, binary
                  cls
clus                 0   1
  LRRC55 MUTATED     2   7
  LRRC55 WILD-TYPE 230 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC55 MUTATED      2    7
  LRRC55 WILD-TYPE  230  501
     clus
vv    LRRC55 MUTATED LRRC55 WILD-TYPE
  NO               2              230
  YES              7              501
[1] 2 2
[1] FALSE
D171V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  LRRC55 MUTATED             1                             0                1
  LRRC55 WILD-TYPE         191                             9              129
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  LRRC55 MUTATED                   1                   0
  LRRC55 WILD-TYPE               189                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  LRRC55 MUTATED                                 6
  LRRC55 WILD-TYPE                             259
D171V7, multiclass
                                 clus
vv                                LRRC55 MUTATED LRRC55 WILD-TYPE
  ASTROCYTOMA                                  1              191
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             1              129
  OLIGODENDROGLIOMA                            1              189
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              6              259
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  LRRC55 MUTATED                                  0     0
  LRRC55 WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  LRRC55 MUTATED                           1     8
  LRRC55 WILD-TYPE                        37   714
D171V8, multiclass
                                  clus
vv                                 LRRC55 MUTATED LRRC55 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     1               37
  WHITE                                         8              714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D171V9, binary
                  cls
clus                 0   1
  LRRC55 MUTATED     0   8
  LRRC55 WILD-TYPE  35 658
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC55 MUTATED      0    8
  LRRC55 WILD-TYPE   35  658
                        clus
vv                       LRRC55 MUTATED LRRC55 WILD-TYPE
  HISPANIC OR LATINO                  0               35
  NOT HISPANIC OR LATINO              8              658
[1] 2 2
[1] FALSE

Clustering(172) Variable = WDR63 MUTATION ANALYSIS
D172V1, survival
                 sevent
clus2               0   1
  WDR63 MUTATED     6   3
  WDR63 WILD-TYPE 447 331
  WDR63 MUTATED WDR63 WILD-TYPE 
              9             778 
  WDR63 MUTATED WDR63 WILD-TYPE 
              3             331 
$`WDR63 MUTATED`
TCGA-02-2483 TCGA-06-2559 TCGA-06-6700 TCGA-28-2502 TCGA-41-3915 TCGA-DU-6392 
       15.32         4.93         4.77         0.66        11.84       211.17 
TCGA-DU-6403 TCGA-HT-8011 TCGA-TM-A84H 
       11.64        16.24        30.44 

$`WDR63 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2485 
        4.73         2.83        14.73         2.50        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       20.32         2.70         6.15        20.38         6.94        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       33.67        12.95        25.35        26.70        11.90         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       10.29         2.20         2.33        46.59        12.33        13.94 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
       10.45         3.19        10.82        10.65         5.85        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.66         3.29         4.47         3.22        88.14        69.90 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       73.84        44.58        15.42        38.96         7.40         7.63 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.53        15.02        24.16         0.72        13.64        13.32 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        48.69        12.62         5.75         5.75         9.80 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.10        23.57        14.20        26.40        46.88         7.86 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        40.41        16.57        20.78        26.76        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08        12.49        17.65        12.56        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95        16.64         4.37         0.43        31.50        11.74 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         5.23 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48       120.56         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
       12.85         4.77         1.55         4.96        18.02        15.35 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.73        12.99        34.92        26.66         3.65        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       22.19        15.22        10.95        34.92        14.53        14.93 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.78         1.35         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.96        17.85         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.17        17.49         0.39         3.42        13.78        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.31        29.03        25.38         5.06         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         7.53         0.16         4.08        24.23         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.50         6.64        17.19         8.02        18.90         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
       12.10         1.78        14.07        16.80        14.96        13.87 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88        18.97 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.33         5.06        16.60         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       24.23        40.54        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.76        18.08        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2509 
       14.40        15.78         2.53         1.22         3.12         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26        14.93        11.28        17.88         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77        31.27        23.44        11.01        13.64         5.16 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
       22.68        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        25.18        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       20.32         3.72        12.59        19.86        10.85        19.23 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        15.12        12.46         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        36.85        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03        23.90        34.45        18.64        36.20 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 
        1.61        17.72        26.30         4.70         7.69        43.89 
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 
       18.15        10.62        64.64        40.18         0.10        21.01 
TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 
        9.96         6.38        17.69        23.84        17.95        12.43 
TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       46.95         7.56        49.94        49.12         6.61       122.73 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 
       81.96        75.25        47.93        72.92        50.86        91.13 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB 
       44.52        36.56        78.28        46.42        18.84        30.21 
TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH 
       46.72        39.78        37.45        33.57        72.95        31.63 
TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S 
       24.20        25.48        30.12         5.98        31.40        27.45 
TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L 
       27.81        29.23        14.40        18.51        12.10        11.24 
TCGA-DB-A75M TCGA-DB-A75O TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       17.88        30.74        16.18        19.96        31.82        63.88 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       46.06         8.02        30.21        42.05        27.81        17.19 
TCGA-DH-A66G TCGA-DH-A7UR TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV 
       17.19        54.25        23.21        17.46        13.71        18.61 
TCGA-DU-5847 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       18.02        14.56        17.46         6.74        13.38         8.45 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 
        6.81       182.33        18.94        17.49        15.16        52.11 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
       22.42        49.02        75.16        46.06        65.75         1.22 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
       87.45         7.04       133.74        19.89        16.83        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 
      114.08         7.96         2.40        11.47        62.96       156.23 
TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 
      154.36        14.99       105.21         6.54         8.84        90.77 
TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 
       30.67        26.30        10.36         7.96        94.32        18.94 
TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 
       44.02        62.01        25.91        60.30        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 
        2.76         5.10        23.74        14.60        20.68        21.40 
TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR 
       19.13        16.96        15.48        14.17        33.27        29.85 
TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 
       31.69        24.43        26.17        24.99        33.96        25.55 
TCGA-DU-A6S3 TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L 
       21.57        95.11        20.98        22.29        11.41        26.76 
TCGA-DU-A76O TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB 
       17.16        21.30        17.98       139.04        84.33        51.52 
TCGA-DU-A7TC TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 
       37.38         7.50        44.42         0.56        50.14        67.46 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       41.13        79.99        57.93       134.27        78.21        95.57 
TCGA-E1-5322 TCGA-E1-A7YD TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ 
      130.78        14.30        29.13        93.21         3.65        19.46 
TCGA-E1-A7YK TCGA-E1-A7YL TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ 
       12.43        16.18        21.30        23.90        75.02        51.88 
TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 
       15.32         0.76        32.45        36.82       146.14        13.08 
TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 
       73.48       145.05        32.35        39.48         0.23         0.20 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 
       47.77        25.48        52.21        36.82        18.77        14.93 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 
       42.54        41.33        18.44        15.35        17.88        40.08 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
       22.55        20.61        20.09        28.34        13.68        14.24 
TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT 
       16.01        20.09        14.96        22.52        32.61        38.27 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       10.72        18.38        18.71        23.70        14.76        17.82 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z 
       21.53        15.02        16.44        22.26        28.54        10.78 
TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 
       36.66        48.69        20.45        18.64         5.72        27.52 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 
        0.10         6.67        11.54        40.11         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 
       16.54         3.75        17.42         6.54        24.26         6.38 
TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
       40.34        75.19        95.93       106.95       172.77         4.01 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 
        5.03        29.85        23.18       122.47         4.57        17.29 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 
        3.16        22.06        45.99        56.09        57.60         0.23 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 
       14.27         0.16        16.24         0.76        44.68         6.05 
TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
       42.74         0.10        31.69        14.96         0.10         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 
        2.96        17.52         6.90        14.53        39.48        19.23 
TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 
       39.09         0.23        50.63         0.49        23.61        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 
        0.33         0.13         3.68         5.33        35.47         3.72 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 
       11.28        31.43         1.64         9.40        63.55         0.10 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 
       37.87        33.01        12.23         6.25         0.10         0.46 
TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 
        2.50         5.56        13.78         0.23        29.59        34.19 
TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 
       13.74        28.27        15.72         0.23        26.04         0.13 
TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 
       20.22         0.07        27.35         0.10         5.33         2.70 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A 
       16.93         1.81        16.14        16.83        21.40         6.38 
TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L 
       17.52        17.65         2.43        10.52        15.35        11.05 
TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
        0.10        56.58        13.45        41.49        45.60        68.32 
TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ 
       35.44        39.75        40.01        42.54         6.18        10.55 
TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X 
       12.76        20.81        20.71        19.00        42.77        14.40 
TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ 
       14.40         0.23         6.71         7.99         2.37         2.30 
TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U 
        4.11         5.88         7.63         0.76         1.28         0.23 
TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 
       10.42        13.25        11.64        10.95         9.01        13.61 
TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 
        9.60         7.56        12.23        19.20         3.45         2.37 
TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z 
        4.41        15.16         2.53        12.62        15.85        14.04 
TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY 
       19.33        14.83        14.53        13.61        12.23         2.20 
TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 
        9.17        10.29        14.53        16.34        16.73         1.91 
TCGA-QH-A6XA TCGA-QH-A6XC TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML 
       16.50         5.03        11.08        12.99        88.83        94.03 
TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 
       32.65        59.38        30.87         5.46         9.90        28.08 
TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV 
        2.07        19.59        30.67        62.17        87.12        18.77 
TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 
       41.10        28.14        35.38        36.82        24.39        25.81 
TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA 
       29.85        32.61        35.15        98.24        95.93         5.85 
TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI 
      123.65        75.25       135.22        85.55        38.56        84.99 
TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ 
       31.10        19.86        26.47        18.61        18.64        14.07 
TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 
       36.13         7.92        26.93        23.51        19.99        20.02 
TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY 
        8.19         2.04        20.68        15.06        18.54        28.37 
TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 
       27.16       169.84        10.39        99.06        30.05        98.63 
TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 
       31.59        18.71        20.48        54.77        48.33        49.32 
TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G 
       34.78        65.39        24.92        16.18        59.05        40.64 
TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q 
       28.08        24.16        40.83        24.79        33.24        25.38 
TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH 
       18.61        14.93        23.80        21.37        19.69        15.98 
TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO 
        2.04        40.41        44.09        36.69        33.73        31.20 
TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW 
       30.05        26.14        25.87        33.93        61.41        26.99 
TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD 
       31.36        43.04        43.20        13.51         0.10         7.89 
TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS 
       39.16        20.02        23.47        37.05        16.01        23.21 
TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A 
        8.05        51.06        13.32        43.96        39.88        43.40 
TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       45.80        46.88        37.71        20.81 

  WDR63 MUTATED WDR63 WILD-TYPE 
           0.66            0.03 
  WDR63 MUTATED WDR63 WILD-TYPE 
         211.17          182.33 
  WDR63 MUTATED WDR63 WILD-TYPE 
          11.84           16.93 
[1] "0.7 - 211.2 (11.8)" "0.0 - 182.3 (16.9)"
[1] "hr=" "1.5"
D172V2, continuous
D172V3, binary
                 cls
clus                0   1
  WDR63 MUTATED     5   4
  WDR63 WILD-TYPE 273 508
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR63 MUTATED      5    4
  WDR63 WILD-TYPE  273  508
                        clus
vv                       WDR63 MUTATED WDR63 WILD-TYPE
  BRAIN                              5             273
  CENTRAL NERVOUS SYSTEM             4             508
[1] 2 2
[1] FALSE
D172V4, binary
                 cls
clus                0   1
  WDR63 MUTATED     3   6
  WDR63 WILD-TYPE 326 455
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR63 MUTATED      3    6
  WDR63 WILD-TYPE  326  455
        clus
vv       WDR63 MUTATED WDR63 WILD-TYPE
  FEMALE             3             326
  MALE               6             455
[1] 2 2
[1] FALSE
D172V5, binary
                 cls
clus                0   1
  WDR63 MUTATED     0   9
  WDR63 WILD-TYPE 232 499
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR63 MUTATED      0    9
  WDR63 WILD-TYPE  232  499
     clus
vv    WDR63 MUTATED WDR63 WILD-TYPE
  NO              0             232
  YES             9             499
[1] 2 2
[1] FALSE
D172V6, continuous
                 vv
clus              ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  WDR63 MUTATED             2                             0                2
  WDR63 WILD-TYPE         190                             9              128
                 vv
clus              OLIGODENDROGLIOMA TREATED PRIMARY GBM
  WDR63 MUTATED                   0                   0
  WDR63 WILD-TYPE               190                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  WDR63 MUTATED                                 5
  WDR63 WILD-TYPE                             260
D172V7, multiclass
                                 clus
vv                                WDR63 MUTATED WDR63 WILD-TYPE
  ASTROCYTOMA                                 2             190
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  OLIGOASTROCYTOMA                            2             128
  OLIGODENDROGLIOMA                           0             190
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             5             260
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  WDR63 MUTATED                                  0     1
  WDR63 WILD-TYPE                                1    12
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  WDR63 MUTATED                           0     8
  WDR63 WILD-TYPE                        38   714
D172V8, multiclass
                                  clus
vv                                 WDR63 MUTATED WDR63 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              12
  BLACK OR AFRICAN AMERICAN                    0              38
  WHITE                                        8             714
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D172V9, binary
                 cls
clus                0   1
  WDR63 MUTATED     0   9
  WDR63 WILD-TYPE  35 657
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR63 MUTATED      0    9
  WDR63 WILD-TYPE   35  657
                        clus
vv                       WDR63 MUTATED WDR63 WILD-TYPE
  HISPANIC OR LATINO                 0              35
  NOT HISPANIC OR LATINO             9             657
[1] 2 2
[1] FALSE

Clustering(173) Variable = KIF26B MUTATION ANALYSIS
D173V1, survival
                  sevent
clus2                0   1
  KIF26B MUTATED     4   2
  KIF26B WILD-TYPE 449 332
  KIF26B MUTATED KIF26B WILD-TYPE 
               6              781 
  KIF26B MUTATED KIF26B WILD-TYPE 
               2              332 
$`KIF26B MUTATED`
TCGA-76-4926 TCGA-DU-6392 TCGA-DU-8165 TCGA-E1-A7YO TCGA-HT-8564 TCGA-QH-A6XC 
        4.54       211.17        19.13        75.02        15.72         5.03 

$`KIF26B WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.22         3.12         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
       14.93        11.28        17.88         2.53        11.77        31.27 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       23.44        11.01        13.64         5.16        22.68        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.39         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        15.02        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
        8.84        22.78        25.18        21.14        20.32         3.72 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.86        10.85        19.23         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       15.12        12.46         3.45        20.91         4.34        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.50         4.80        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8166 
        5.10        23.74        14.60        20.68        21.40        16.96 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT 
       15.48        14.17        33.27        29.85        31.69        24.43 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 TCGA-DU-A6S6 
       26.17        24.99        33.96        25.55        21.57        95.11 
TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O TCGA-DU-A76R 
       20.98        22.29        11.41        26.76        17.16        21.30 
TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC TCGA-DU-A7TD 
       17.98       139.04        84.33        51.52        37.38         7.50 
TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 
       44.42         0.56        50.14        67.46        41.13        79.99 
TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-E1-A7YD 
       57.93       134.27        78.21        95.57       130.78        14.30 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU TCGA-E1-A7YV 
       21.30        23.90        51.88        15.32         0.76        32.45 
TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 TCGA-E1-A7Z6 
       36.82       146.14        13.08        73.48       145.05        32.35 
TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
       39.48         0.23         0.20        47.77        25.48        52.21 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
       36.82        18.77        14.93        42.54        41.33        18.44 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
       15.35        17.88        40.08        22.55        20.61        20.09 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
       28.34        13.68        14.24        16.01        20.09        14.96 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       22.52        32.61        38.27        10.72        18.38        18.71 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J1 
       23.70        14.76        17.82        21.53        15.02        16.44 
TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 TCGA-FG-A713 
       22.26        28.54        10.78        36.66        48.69        20.45 
TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 
       18.64         5.72        27.52         0.10         6.67        11.54 
TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
       40.11         0.13         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
        6.54        24.26         6.38        40.34        75.19        95.93 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
      106.95       172.77         4.01         5.03        29.85        23.18 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      122.47         4.57        17.29         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
       56.09        57.60         0.23        14.27         0.16        16.24 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
        0.76        44.68         6.05        42.74         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
       14.96         0.10         0.10         2.96        17.52         6.90 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
       14.53        39.48        19.23        39.09         0.23        50.63 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
        0.49        23.61        37.15         0.33         0.13         3.68 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        5.33        35.47         3.72        11.28        31.43         1.64 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 TCGA-HT-8019 
       16.24         9.40        63.55         0.10        37.87        33.01 
TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 
       12.23         6.25         0.10         0.46         2.50         5.56 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 
       13.78         0.23        29.59        34.19        13.74        28.27 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 TCGA-HT-A5R9 TCGA-HT-A5RA 
        0.23        26.04         0.13        20.22         0.07        27.35 
TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HT-A617 
        0.10         5.33         2.70        16.93         1.81        16.14 
TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B TCGA-HT-A61C TCGA-HT-A74H 
       16.83        21.40         6.38        17.52        17.65         2.43 
TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O TCGA-HW-7486 TCGA-HW-7487 
       10.52        15.35        11.05         0.10        56.58        13.45 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 TCGA-HW-8319 TCGA-HW-8320 
       41.49        45.60        68.32        35.44        39.75        40.01 
TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK TCGA-HW-A5KL TCGA-HW-A5KM 
       42.54         6.18        10.55        12.76        20.81        20.71 
TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 TCGA-P5-A5EV TCGA-P5-A5EW 
       19.00        42.77        14.40        14.40         0.23         6.71 
TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 TCGA-P5-A5F1 TCGA-P5-A5F2 
        7.99         2.37         2.30         4.11         5.88         7.63 
TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W TCGA-P5-A72X TCGA-P5-A72Z 
        0.76         1.28         0.23        10.42        13.25        11.64 
TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 TCGA-P5-A736 TCGA-P5-A737 
       10.95         9.01        13.61         9.60         7.56        12.23 
TCGA-P5-A77W TCGA-P5-A77X TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R TCGA-QH-A65S 
       19.20         3.45         2.37         4.41        15.16         2.53 
TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU TCGA-QH-A6CV 
       12.62        15.85        14.04        19.33        14.83        14.53 
TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 TCGA-QH-A6X4 
       13.61        12.23         2.20         9.17        10.29        14.53 
TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A86X TCGA-QH-A870 
       16.34        16.73         1.91        16.50        11.08        12.99 
TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M TCGA-RY-A83X TCGA-RY-A83Y 
       88.83        94.03        32.65        59.38        30.87         5.46 
TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 TCGA-RY-A847 TCGA-S9-A6TS 
        9.90        28.08         2.07        19.59        30.67        62.17 
TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX TCGA-S9-A6TY TCGA-S9-A6TZ 
       87.12        18.77        41.10        28.14        35.38        36.82 
TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 TCGA-S9-A6U6 TCGA-S9-A6U8 
       24.39        25.81        29.85        32.61        35.15        98.24 
TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD TCGA-S9-A6WE TCGA-S9-A6WG 
       95.93         5.85       123.65        75.25       135.22        85.55 
TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM TCGA-S9-A6WN TCGA-S9-A6WO 
       38.56        84.99        31.10        19.86        26.47        18.61 
TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS TCGA-S9-A7IX TCGA-S9-A7IY 
       18.64        14.07        36.13         7.92        26.93        23.51 
TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 TCGA-S9-A7J3 TCGA-S9-A7QW 
       19.99        20.02         8.19         2.04        20.68        15.06 
TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 TCGA-S9-A7R2 TCGA-S9-A7R3 
       18.54        28.37        27.16       169.84        10.39        99.06 
TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V TCGA-S9-A89Z TCGA-TM-A7C3 
       30.05        98.63        31.59        18.71        20.48        54.77 
TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF TCGA-TM-A84B TCGA-TM-A84C 
       48.33        49.32        34.78        65.39        24.92        16.18 
TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I TCGA-TM-A84J TCGA-TM-A84L 
       59.05        40.64        30.44        28.08        24.16        40.83 
TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R TCGA-TM-A84S TCGA-TM-A84T 
       24.79        33.24        25.38        18.61        14.93        23.80 
TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI TCGA-TQ-A7RJ TCGA-TQ-A7RK 
       21.37        19.69        15.98         2.04        40.41        44.09 
TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP TCGA-TQ-A7RQ TCGA-TQ-A7RR 
       36.69        33.73        31.20        30.05        26.14        25.87 
TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE TCGA-VM-A8C8 TCGA-VM-A8C9 
       33.93        61.41        26.99        31.36        43.04        43.20 
TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE TCGA-VM-A8CF TCGA-VM-A8CH 
       13.51         0.10         7.89        39.16        20.02        23.47 
TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI TCGA-W9-A837 TCGA-WH-A86K 
       37.05        16.01        23.21         8.05        51.06        13.32 
TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B TCGA-WY-A85C TCGA-WY-A85D 
       43.96        39.88        43.40        45.80        46.88        37.71 
TCGA-WY-A85E 
       20.81 

  KIF26B MUTATED KIF26B WILD-TYPE 
            4.54             0.03 
  KIF26B MUTATED KIF26B WILD-TYPE 
          211.17           182.33 
  KIF26B MUTATED KIF26B WILD-TYPE 
          17.425           16.830 
[1] "4.5 - 211.2 (17.4)" "0.0 - 182.3 (16.8)"
[1] "hr=" "2.3"
D173V2, continuous
D173V3, binary
                  cls
clus                 0   1
  KIF26B MUTATED     1   5
  KIF26B WILD-TYPE 277 507
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KIF26B MUTATED      1    5
  KIF26B WILD-TYPE  277  507
                        clus
vv                       KIF26B MUTATED KIF26B WILD-TYPE
  BRAIN                               1              277
  CENTRAL NERVOUS SYSTEM              5              507
[1] 2 2
[1] FALSE
D173V4, binary
                  cls
clus                 0   1
  KIF26B MUTATED     2   4
  KIF26B WILD-TYPE 327 457
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KIF26B MUTATED      2    4
  KIF26B WILD-TYPE  327  457
        clus
vv       KIF26B MUTATED KIF26B WILD-TYPE
  FEMALE              2              327
  MALE                4              457
[1] 2 2
[1] FALSE
D173V5, binary
                  cls
clus                 0   1
  KIF26B MUTATED     2   4
  KIF26B WILD-TYPE 230 504
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KIF26B MUTATED      2    4
  KIF26B WILD-TYPE  230  504
     clus
vv    KIF26B MUTATED KIF26B WILD-TYPE
  NO               2              230
  YES              4              504
[1] 2 2
[1] FALSE
D173V6, continuous
                  vv
clus               ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  KIF26B MUTATED             3                             0                0
  KIF26B WILD-TYPE         189                             9              130
                  vv
clus               OLIGODENDROGLIOMA TREATED PRIMARY GBM
  KIF26B MUTATED                   2                   0
  KIF26B WILD-TYPE               188                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  KIF26B MUTATED                                 1
  KIF26B WILD-TYPE                             264
D173V7, multiclass
                                 clus
vv                                KIF26B MUTATED KIF26B WILD-TYPE
  ASTROCYTOMA                                  3              189
  GLIOBLASTOMA MULTIFORME (GBM)                0                9
  OLIGOASTROCYTOMA                             0              130
  OLIGODENDROGLIOMA                            2              188
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM              1              264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KIF26B MUTATED                                  0     0
  KIF26B WILD-TYPE                                1    13
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  KIF26B MUTATED                           0     6
  KIF26B WILD-TYPE                        38   716
D173V8, multiclass
                                  clus
vv                                 KIF26B MUTATED KIF26B WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               13
  BLACK OR AFRICAN AMERICAN                     0               38
  WHITE                                         6              716
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D173V9, binary
                  cls
clus                 0   1
  KIF26B MUTATED     1   4
  KIF26B WILD-TYPE  34 662
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KIF26B MUTATED      1    4
  KIF26B WILD-TYPE   34  662
                        clus
vv                       KIF26B MUTATED KIF26B WILD-TYPE
  HISPANIC OR LATINO                  1               34
  NOT HISPANIC OR LATINO              4              662
[1] 2 2
[1] FALSE

Clustering(174) Variable = AGXT2L1 MUTATION ANALYSIS
D174V1, survival
                   sevent
clus2                 0   1
  AGXT2L1 MUTATED     3   1
  AGXT2L1 WILD-TYPE 450 333
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                4               783 
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                1               333 
$`AGXT2L1 MUTATED`
TCGA-28-2514 TCGA-DU-6392 TCGA-E1-A7YD TCGA-P5-A77X 
        5.26       211.17        14.30         3.45 

$`AGXT2L1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        20.32         2.70         6.15        20.38         6.94 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        33.67        12.95        25.35        26.70        11.90 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20        10.29         2.20         2.33        46.59        12.33 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       13.94        10.45         3.19        10.82        10.65         5.85 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.66         3.29         4.47         3.22        88.14 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       69.90        73.84        44.58        15.42        38.96         7.40 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.63         0.53        15.02        24.16         0.72        13.64 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       13.32        20.42        48.69        12.62         5.75         5.75 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.80         2.10        23.57        14.20        26.40        46.88 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        7.86         2.70         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        40.41        16.57        20.78        26.76 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08        12.49         4.93        17.65 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
       12.56        30.64         5.95        16.64         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.74         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.57         5.23         7.79         5.39         1.48       120.56 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        18.02        15.35        14.73        12.99        34.92 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       26.66         3.65        10.62        22.19        15.22        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.92        14.53        14.93         3.22         2.04        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.42        13.78        50.53         3.91         4.31        29.03 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.06         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        24.23         7.00         4.50         6.64        17.19 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.90         4.73        12.10         1.78        14.07 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
       16.80        14.96        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88        18.97         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        5.06        16.60         9.86        24.23        40.54        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.76        18.08        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.78         2.53 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 
        1.22         3.12         0.66         4.77         7.30        14.93 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
       11.28        17.88         2.53        11.77        31.27        23.44 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       11.01        13.64         5.16        22.68        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        25.18        21.14        20.32         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        19.23         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        15.12 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       12.46         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        36.85        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.35        20.98         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
       23.90        34.45        18.64        36.20         1.61        17.72 
TCGA-87-5896 TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 
       26.30         4.70         7.69        43.89        18.15        10.62 
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 
       64.64        40.18         0.10        21.01         9.96         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43        46.95         7.56 
TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 
       49.94        49.12         6.61       122.73        81.96        75.25 
TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 
       47.93        72.92        50.86        91.13        44.52        36.56 
TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       78.28        46.42        18.84        30.21        46.72        39.78 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O 
       37.45        33.57        72.95        31.63        24.20        25.48 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V 
       30.12         5.98        31.40        27.45        27.81        29.23 
TCGA-DB-A64W TCGA-DB-A64X TCGA-DB-A75K TCGA-DB-A75L TCGA-DB-A75M TCGA-DB-A75O 
       14.40        18.51        12.10        11.24        17.88        30.74 
TCGA-DB-A75P TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       16.18        19.96        31.82        63.88        46.06         8.02 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DH-A7UR 
       30.21        42.05        27.81        17.19        17.19        54.25 
TCGA-DH-A7US TCGA-DH-A7UT TCGA-DH-A7UU TCGA-DH-A7UV TCGA-DU-5847 TCGA-DU-5849 
       23.21        17.46        13.71        18.61        18.02        14.56 
TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 
       17.46         6.74        13.38         8.45         6.81       182.33 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       18.94        17.49        15.16        52.11        22.42        49.02 
TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 
       75.16        46.06        65.75         1.22        87.45         7.04 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       11.64       133.74        19.89        16.83        94.52       114.08 
TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7009 
        7.96         2.40        11.47        62.96       156.23       154.36 
TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7018 
       14.99       105.21         6.54         8.84        90.77        30.67 
TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
       26.30        10.36         7.96        94.32        18.94        44.02 
TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 
       62.01        25.91        60.30        23.31        41.98         2.76 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 
        5.10        23.74        14.60        20.68        21.40        19.13 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS 
       16.96        15.48        14.17        33.27        29.85        31.69 
TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-DU-A6S2 TCGA-DU-A6S3 
       24.43        26.17        24.99        33.96        25.55        21.57 
TCGA-DU-A6S6 TCGA-DU-A6S7 TCGA-DU-A6S8 TCGA-DU-A76K TCGA-DU-A76L TCGA-DU-A76O 
       95.11        20.98        22.29        11.41        26.76        17.16 
TCGA-DU-A76R TCGA-DU-A7T6 TCGA-DU-A7T8 TCGA-DU-A7TA TCGA-DU-A7TB TCGA-DU-A7TC 
       21.30        17.98       139.04        84.33        51.52        37.38 
TCGA-DU-A7TD TCGA-DU-A7TG TCGA-DU-A7TJ TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        7.50        44.42         0.56        50.14        67.46        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       79.99        57.93       134.27        78.21        95.57       130.78 
TCGA-E1-A7YE TCGA-E1-A7YH TCGA-E1-A7YI TCGA-E1-A7YJ TCGA-E1-A7YK TCGA-E1-A7YL 
       29.13        93.21         3.65        19.46        12.43        16.18 
TCGA-E1-A7YM TCGA-E1-A7YN TCGA-E1-A7YO TCGA-E1-A7YQ TCGA-E1-A7YS TCGA-E1-A7YU 
       21.30        23.90        75.02        51.88        15.32         0.76 
TCGA-E1-A7YV TCGA-E1-A7YW TCGA-E1-A7YY TCGA-E1-A7Z2 TCGA-E1-A7Z3 TCGA-E1-A7Z4 
       32.45        36.82       146.14        13.08        73.48       145.05 
TCGA-E1-A7Z6 TCGA-EZ-7264 TCGA-F6-A8O3 TCGA-F6-A8O4 TCGA-FG-5962 TCGA-FG-5963 
       32.35        39.48         0.23         0.20        47.77        25.48 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 
       52.21        36.82        18.77        14.93        42.54        41.33 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 
       18.44        15.35        17.88        40.08        22.55        20.61 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 
       20.09        28.34        13.68        14.24        16.01        20.09 
TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW 
       14.96        22.52        32.61        38.27        10.72        18.38 
TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       18.71        23.70        14.76        17.82        21.53        15.02 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FG-A70Y TCGA-FG-A70Z TCGA-FG-A710 TCGA-FG-A711 
       16.44        22.26        28.54        10.78        36.66        48.69 
TCGA-FG-A713 TCGA-FG-A87N TCGA-FG-A87Q TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
       20.45        18.64         5.72        27.52         0.10         6.67 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
       11.54        40.11         0.13         0.03        16.54         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7477 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 
       17.42         6.54        24.26         6.38        40.34        75.19 
TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
       95.93       106.95       172.77         4.01         5.03        29.85 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 
       23.18       122.47         4.57        17.29         3.16        22.06 
TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 
       45.99        56.09        57.60         0.23        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
       16.24         0.76        44.68         6.05        42.74         0.10 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
       31.69        14.96         0.10         0.10         2.96        17.52 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 
        6.90        14.53        39.48        19.23        39.09         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
       50.63         0.49        23.61        37.15         0.33         0.13 
TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 
        3.68         5.33        35.47         3.72        11.28        31.43 
TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8015 TCGA-HT-8018 
        1.64        16.24         9.40        63.55         0.10        37.87 
TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 
       33.01        12.23         6.25         0.10         0.46         2.50 
TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 
        5.56        13.78         0.23        29.59        34.19        13.74 
TCGA-HT-8563 TCGA-HT-8564 TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R7 
       28.27        15.72         0.23        26.04         0.13        20.22 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB TCGA-HT-A5RC TCGA-HT-A614 TCGA-HT-A615 
        0.07        27.35         0.10         5.33         2.70        16.93 
TCGA-HT-A616 TCGA-HT-A617 TCGA-HT-A618 TCGA-HT-A619 TCGA-HT-A61A TCGA-HT-A61B 
        1.81        16.14        16.83        21.40         6.38        17.52 
TCGA-HT-A61C TCGA-HT-A74H TCGA-HT-A74J TCGA-HT-A74K TCGA-HT-A74L TCGA-HT-A74O 
       17.65         2.43        10.52        15.35        11.05         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7495 
       56.58        13.45        41.49        45.60        68.32        35.44 
TCGA-HW-8319 TCGA-HW-8320 TCGA-HW-8321 TCGA-HW-8322 TCGA-HW-A5KJ TCGA-HW-A5KK 
       39.75        40.01        42.54         6.18        10.55        12.76 
TCGA-HW-A5KL TCGA-HW-A5KM TCGA-IK-7675 TCGA-IK-8125 TCGA-KT-A74X TCGA-KT-A7W1 
       20.81        20.71        19.00        42.77        14.40        14.40 
TCGA-P5-A5EV TCGA-P5-A5EW TCGA-P5-A5EX TCGA-P5-A5EY TCGA-P5-A5EZ TCGA-P5-A5F0 
        0.23         6.71         7.99         2.37         2.30         4.11 
TCGA-P5-A5F1 TCGA-P5-A5F2 TCGA-P5-A5F4 TCGA-P5-A5F6 TCGA-P5-A72U TCGA-P5-A72W 
        5.88         7.63         0.76         1.28         0.23        10.42 
TCGA-P5-A72X TCGA-P5-A72Z TCGA-P5-A730 TCGA-P5-A731 TCGA-P5-A733 TCGA-P5-A735 
       13.25        11.64        10.95         9.01        13.61         9.60 
TCGA-P5-A736 TCGA-P5-A737 TCGA-P5-A77W TCGA-P5-A780 TCGA-P5-A781 TCGA-QH-A65R 
        7.56        12.23        19.20         2.37         4.41        15.16 
TCGA-QH-A65S TCGA-QH-A65V TCGA-QH-A65X TCGA-QH-A65Z TCGA-QH-A6CS TCGA-QH-A6CU 
        2.53        12.62        15.85        14.04        19.33        14.83 
TCGA-QH-A6CV TCGA-QH-A6CW TCGA-QH-A6CX TCGA-QH-A6CY TCGA-QH-A6CZ TCGA-QH-A6X3 
       14.53        13.61        12.23         2.20         9.17        10.29 
TCGA-QH-A6X4 TCGA-QH-A6X5 TCGA-QH-A6X8 TCGA-QH-A6X9 TCGA-QH-A6XA TCGA-QH-A6XC 
       14.53        16.34        16.73         1.91        16.50         5.03 
TCGA-QH-A86X TCGA-QH-A870 TCGA-R8-A6MK TCGA-R8-A6ML TCGA-R8-A6MO TCGA-R8-A73M 
       11.08        12.99        88.83        94.03        32.65        59.38 
TCGA-RY-A83X TCGA-RY-A83Y TCGA-RY-A83Z TCGA-RY-A840 TCGA-RY-A843 TCGA-RY-A845 
       30.87         5.46         9.90        28.08         2.07        19.59 
TCGA-RY-A847 TCGA-S9-A6TS TCGA-S9-A6TU TCGA-S9-A6TV TCGA-S9-A6TW TCGA-S9-A6TX 
       30.67        62.17        87.12        18.77        41.10        28.14 
TCGA-S9-A6TY TCGA-S9-A6TZ TCGA-S9-A6U0 TCGA-S9-A6U1 TCGA-S9-A6U2 TCGA-S9-A6U5 
       35.38        36.82        24.39        25.81        29.85        32.61 
TCGA-S9-A6U6 TCGA-S9-A6U8 TCGA-S9-A6U9 TCGA-S9-A6UA TCGA-S9-A6UB TCGA-S9-A6WD 
       35.15        98.24        95.93         5.85       123.65        75.25 
TCGA-S9-A6WE TCGA-S9-A6WG TCGA-S9-A6WH TCGA-S9-A6WI TCGA-S9-A6WL TCGA-S9-A6WM 
      135.22        85.55        38.56        84.99        31.10        19.86 
TCGA-S9-A6WN TCGA-S9-A6WO TCGA-S9-A6WP TCGA-S9-A6WQ TCGA-S9-A7IQ TCGA-S9-A7IS 
       26.47        18.61        18.64        14.07        36.13         7.92 
TCGA-S9-A7IX TCGA-S9-A7IY TCGA-S9-A7IZ TCGA-S9-A7J0 TCGA-S9-A7J1 TCGA-S9-A7J2 
       26.93        23.51        19.99        20.02         8.19         2.04 
TCGA-S9-A7J3 TCGA-S9-A7QW TCGA-S9-A7QX TCGA-S9-A7QY TCGA-S9-A7QZ TCGA-S9-A7R1 
       20.68        15.06        18.54        28.37        27.16       169.84 
TCGA-S9-A7R2 TCGA-S9-A7R3 TCGA-S9-A7R4 TCGA-S9-A7R7 TCGA-S9-A7R8 TCGA-S9-A89V 
       10.39        99.06        30.05        98.63        31.59        18.71 
TCGA-S9-A89Z TCGA-TM-A7C3 TCGA-TM-A7C4 TCGA-TM-A7C5 TCGA-TM-A7CA TCGA-TM-A7CF 
       20.48        54.77        48.33        49.32        34.78        65.39 
TCGA-TM-A84B TCGA-TM-A84C TCGA-TM-A84F TCGA-TM-A84G TCGA-TM-A84H TCGA-TM-A84I 
       24.92        16.18        59.05        40.64        30.44        28.08 
TCGA-TM-A84J TCGA-TM-A84L TCGA-TM-A84M TCGA-TM-A84O TCGA-TM-A84Q TCGA-TM-A84R 
       24.16        40.83        24.79        33.24        25.38        18.61 
TCGA-TM-A84S TCGA-TM-A84T TCGA-TQ-A7RF TCGA-TQ-A7RG TCGA-TQ-A7RH TCGA-TQ-A7RI 
       14.93        23.80        21.37        19.69        15.98         2.04 
TCGA-TQ-A7RJ TCGA-TQ-A7RK TCGA-TQ-A7RM TCGA-TQ-A7RN TCGA-TQ-A7RO TCGA-TQ-A7RP 
       40.41        44.09        36.69        33.73        31.20        30.05 
TCGA-TQ-A7RQ TCGA-TQ-A7RR TCGA-TQ-A7RU TCGA-TQ-A7RV TCGA-TQ-A7RW TCGA-TQ-A8XE 
       26.14        25.87        33.93        61.41        26.99        31.36 
TCGA-VM-A8C8 TCGA-VM-A8C9 TCGA-VM-A8CA TCGA-VM-A8CB TCGA-VM-A8CD TCGA-VM-A8CE 
       43.04        43.20        13.51         0.10         7.89        39.16 
TCGA-VM-A8CF TCGA-VM-A8CH TCGA-VV-A829 TCGA-VV-A86M TCGA-VW-A7QS TCGA-VW-A8FI 
       20.02        23.47        37.05        16.01        23.21         8.05 
TCGA-W9-A837 TCGA-WH-A86K TCGA-WY-A858 TCGA-WY-A859 TCGA-WY-A85A TCGA-WY-A85B 
       51.06        13.32        43.96        39.88        43.40        45.80 
TCGA-WY-A85C TCGA-WY-A85D TCGA-WY-A85E 
       46.88        37.71        20.81 

  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
             3.45              0.03 
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
           211.17            182.33 
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
             9.78             16.83 
[1] "3.5 - 211.2 (9.8)"  "0.0 - 182.3 (16.8)"
[1] "hr=" "3.2"
D174V2, continuous
D174V3, binary
                   cls
clus                  0   1
  AGXT2L1 MUTATED     1   3
  AGXT2L1 WILD-TYPE 277 509
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AGXT2L1 MUTATED      1    3
  AGXT2L1 WILD-TYPE  277  509
                        clus
vv                       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  BRAIN                                1               277
  CENTRAL NERVOUS SYSTEM               3               509
[1] 2 2
[1] FALSE
D174V4, binary
                   cls
clus                  0   1
  AGXT2L1 MUTATED     2   2
  AGXT2L1 WILD-TYPE 327 459
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AGXT2L1 MUTATED      2    2
  AGXT2L1 WILD-TYPE  327  459
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  FEMALE               2               327
  MALE                 2               459
[1] 2 2
[1] FALSE
D174V5, binary
                   cls
clus                  0   1
  AGXT2L1 MUTATED     0   4
  AGXT2L1 WILD-TYPE 232 504
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AGXT2L1 MUTATED      0    4
  AGXT2L1 WILD-TYPE  232  504
     clus
vv    AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  NO                0               232
  YES               4               504
[1] 2 2
[1] FALSE
D174V6, continuous
[1] "Remove cluster labels:" "AGXT2L1 MUTATED"       
clus
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                1               509 
       TCGA-02-0003        TCGA-02-0033        TCGA-02-0047        TCGA-02-0055 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-02-2470        TCGA-02-2483        TCGA-02-2485        TCGA-02-2486 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0126        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0151 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0154        TCGA-06-0155        TCGA-06-0157        TCGA-06-0158 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0165        TCGA-06-0167        TCGA-06-0168        TCGA-06-0169 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0178        TCGA-06-0184        TCGA-06-0185 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0188        TCGA-06-0192        TCGA-06-0195        TCGA-06-0214 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0238        TCGA-06-0240        TCGA-06-0241 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0646        TCGA-06-0648        TCGA-06-0686 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0743        TCGA-06-0744        TCGA-06-0745        TCGA-06-0747 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0750        TCGA-06-0875        TCGA-06-0876        TCGA-06-0878 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-1806        TCGA-06-2557        TCGA-06-2558        TCGA-06-2559 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-2561        TCGA-06-2562        TCGA-06-2563        TCGA-06-2564 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-2565        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5417 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6695        TCGA-06-6697 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-06-6700        TCGA-08-0386        TCGA-12-0615        TCGA-12-0616 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0688        TCGA-12-0692 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-12-0821        TCGA-12-1597        TCGA-12-3649        TCGA-12-3650 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-12-3652        TCGA-12-3653        TCGA-12-5299        TCGA-12-5301 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-14-0740        TCGA-14-0786        TCGA-14-0787        TCGA-14-0789 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1043        TCGA-14-1395        TCGA-14-1450 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-14-1456        TCGA-14-1823        TCGA-14-1825        TCGA-14-1829 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-14-2554        TCGA-14-4157        TCGA-15-0742        TCGA-19-1390 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-19-1790        TCGA-19-2619        TCGA-19-2620        TCGA-19-2623 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4068        TCGA-19-5947        TCGA-19-5950 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5954        TCGA-19-5958 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1442        TCGA-26-5132 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5139        TCGA-26-6173 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-26-6174        TCGA-27-1830        TCGA-27-1831        TCGA-27-1832 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-27-1833        TCGA-27-1834        TCGA-27-1835        TCGA-27-1836 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-27-1837        TCGA-27-1838        TCGA-27-2518        TCGA-27-2519 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-27-2521        TCGA-27-2523        TCGA-27-2524        TCGA-27-2526 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-27-2527        TCGA-27-2528        TCGA-28-2502        TCGA-28-2509 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-28-2513        TCGA-28-5204        TCGA-28-5207        TCGA-28-5208 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5219        TCGA-28-5220        TCGA-32-1982 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-32-1986        TCGA-32-2615        TCGA-32-2638        TCGA-32-4213 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-41-2571        TCGA-41-2573        TCGA-41-2575        TCGA-74-6573 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6584 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-76-4925        TCGA-76-4926        TCGA-76-4927        TCGA-76-4928 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4932        TCGA-76-4934 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-CS-4938 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CS-4941        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5395        TCGA-CS-5396 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6290 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CS-6665        TCGA-CS-6666        TCGA-CS-6667        TCGA-CS-6668 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CS-6669        TCGA-DB-5274        TCGA-DB-A4XE        TCGA-DB-A64L 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DB-A64Q        TCGA-DB-A64R        TCGA-DB-A64S        TCGA-DB-A64U 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DB-A64V        TCGA-DB-A64W        TCGA-DB-A64X        TCGA-DB-A75L 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DH-5140        TCGA-DH-5142        TCGA-DH-5143 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DH-5144        TCGA-DH-A66B        TCGA-DH-A66D        TCGA-DH-A66F 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DH-A66G        TCGA-DH-A7UR        TCGA-DH-A7UU        TCGA-DH-A7UV 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853        TCGA-DU-5854 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871        TCGA-DU-5874 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-6396        TCGA-DU-6401        TCGA-DU-6403        TCGA-DU-6404 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-6405        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7011        TCGA-DU-7013        TCGA-DU-7015 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7294        TCGA-DU-7298 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-7299        TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8165 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A6S2 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-A6S6        TCGA-DU-A6S7        TCGA-DU-A6S8        TCGA-DU-A76R 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-A7T6        TCGA-DU-A7T8        TCGA-DU-A7TA        TCGA-DU-A7TB 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DU-A7TC        TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-E1-5302 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-A7YE        TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-A7YK        TCGA-E1-A7YL        TCGA-E1-A7YM        TCGA-E1-A7YN 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-A7YO        TCGA-E1-A7YQ        TCGA-E1-A7YS        TCGA-E1-A7YV 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2        TCGA-E1-A7Z4 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-E1-A7Z6        TCGA-FG-5963        TCGA-FG-5965        TCGA-FG-6688 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7636 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-FG-7638        TCGA-FG-8181        TCGA-FG-8185        TCGA-FG-8186 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-A4MT 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A60J        TCGA-FG-A60L 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-FG-A6J1        TCGA-FG-A6J3        TCGA-FG-A711        TCGA-FG-A713 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-FG-A87Q        TCGA-HT-7468        TCGA-HT-7470        TCGA-HT-7475 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7485 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7609        TCGA-HT-7611        TCGA-HT-7686 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-7689        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7858 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7884        TCGA-HT-8013        TCGA-HT-8105 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-8113        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R7 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-A5RA        TCGA-HT-A5RC        TCGA-HT-A615        TCGA-HT-A617 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-A618        TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A61C 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-HT-A74L        TCGA-IK-7675        TCGA-KT-A74X        TCGA-KT-A7W1 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-P5-A731        TCGA-QH-A65R        TCGA-QH-A65S        TCGA-QH-A65V 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS        TCGA-QH-A6CU 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX        TCGA-QH-A6CY 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-QH-A6CZ        TCGA-QH-A6X3        TCGA-QH-A6X4        TCGA-QH-A6X5 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-QH-A86X        TCGA-QH-A870        TCGA-RY-A83Y        TCGA-RY-A840 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-RY-A845        TCGA-RY-A847        TCGA-S9-A6TS        TCGA-S9-A6TU 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A6TV        TCGA-S9-A6TW        TCGA-S9-A6TX        TCGA-S9-A6TY 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A6TZ        TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U2 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A6U5        TCGA-S9-A6U6        TCGA-S9-A6U8        TCGA-S9-A6UA 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A6UB        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WI        TCGA-S9-A6WL        TCGA-S9-A6WM 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A6WN        TCGA-S9-A6WO        TCGA-S9-A6WP        TCGA-S9-A6WQ 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IX        TCGA-S9-A7IY 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A7IZ        TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A7J3        TCGA-S9-A7QW        TCGA-S9-A7QX        TCGA-S9-A7QY 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R2        TCGA-S9-A7R3 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A7R4        TCGA-S9-A7R7        TCGA-S9-A7R8        TCGA-S9-A89V 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-S9-A89Z        TCGA-TM-A7C3        TCGA-TM-A7C4        TCGA-TM-A7C5 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TM-A7CA        TCGA-TM-A7CF        TCGA-TM-A84B        TCGA-TM-A84C 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TM-A84F        TCGA-TM-A84G        TCGA-TM-A84H        TCGA-TM-A84I 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TM-A84J        TCGA-TM-A84L        TCGA-TM-A84M        TCGA-TM-A84O 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TM-A84Q        TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TM-A84T 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TQ-A7RG        TCGA-TQ-A7RK        TCGA-TQ-A7RM        TCGA-TQ-A7RN 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TQ-A7RO        TCGA-TQ-A7RP        TCGA-TQ-A7RQ        TCGA-TQ-A7RR 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TQ-A7RS        TCGA-TQ-A7RU        TCGA-TQ-A7RV        TCGA-TQ-A7RW 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8CA        TCGA-VM-A8CD 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-VM-A8CE        TCGA-VM-A8CF        TCGA-VM-A8CH        TCGA-WY-A858 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-WY-A859 
"AGXT2L1 WILD-TYPE" 
                   vv
clus                ASTROCYTOMA GLIOBLASTOMA MULTIFORME (GBM) OLIGOASTROCYTOMA
  AGXT2L1 MUTATED             2                             0                1
  AGXT2L1 WILD-TYPE         190                             9              129
                   vv
clus                OLIGODENDROGLIOMA TREATED PRIMARY GBM
  AGXT2L1 MUTATED                   0                   0
  AGXT2L1 WILD-TYPE               190                   4
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  AGXT2L1 MUTATED                                 1
  AGXT2L1 WILD-TYPE                             264
D174V7, multiclass
                                 clus
vv                                AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  ASTROCYTOMA                                   2               190
  GLIOBLASTOMA MULTIFORME (GBM)                 0                 9
  OLIGOASTROCYTOMA                              1               129
  OLIGODENDROGLIOMA                             0               190
  TREATED PRIMARY GBM                           0                 4
  UNTREATED PRIMARY (DE NOVO) GBM               1               264
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AGXT2L1 MUTATED                                  0     1
  AGXT2L1 WILD-TYPE                                1    12
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  AGXT2L1 MUTATED                           0     3
  AGXT2L1 WILD-TYPE                        38   719
D174V8, multiclass
                                  clus
vv                                 AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          1                12
  BLACK OR AFRICAN AMERICAN                      0                38
  WHITE                                          3               719
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D174V9, binary
                   cls
clus                  0   1
  AGXT2L1 MUTATED     0   4
  AGXT2L1 WILD-TYPE  35 662
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AGXT2L1 MUTATED      0    4
  AGXT2L1 WILD-TYPE   35  662
                        clus
vv                       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  HISPANIC OR LATINO                   0                35
  NOT HISPANIC OR LATINO               4               662
[1] 2 2
[1] FALSE
