Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BA-4074-01A-01D-1431-02	TCGA-BA-4075-01A-01D-1431-02	TCGA-BA-4076-01A-01D-1431-02	TCGA-BA-4077-01B-01D-1431-02	TCGA-BA-4078-01A-01D-1431-02	TCGA-BA-5149-01A-01D-1509-02	TCGA-BA-5151-01A-01D-1431-02	TCGA-BA-5153-01A-01D-1431-02	TCGA-BA-5555-01A-01D-1509-02	TCGA-BA-5557-01A-01D-1509-02	TCGA-BA-5558-01A-01D-1509-02	TCGA-BA-5559-01A-01D-1509-02	TCGA-BB-4223-01A-01D-1431-02	TCGA-BB-4224-01A-01D-1431-02	TCGA-BB-4225-01A-01D-1431-02	TCGA-CN-4722-01A-01D-1431-02	TCGA-CN-4725-01A-01D-1431-02	TCGA-CN-4727-01A-01D-1431-02	TCGA-CN-4729-01A-01D-1431-02	TCGA-CN-4730-01A-01D-1431-02	TCGA-CN-4731-01A-01D-1431-02	TCGA-CN-4733-01A-02D-1868-02	TCGA-CN-4734-01A-01D-1431-02	TCGA-CN-4735-01A-01D-1431-02	TCGA-CN-4736-01A-01D-1431-02	TCGA-CN-4737-01A-01D-1431-02	TCGA-CN-4738-01A-02D-1509-02	TCGA-CN-4739-01A-02D-1509-02	TCGA-CN-4740-01A-01D-1431-02	TCGA-CN-4741-01A-01D-1431-02	TCGA-CN-4742-01A-02D-1509-02	TCGA-CN-5355-01A-01D-1431-02	TCGA-CN-5356-01A-01D-1431-02	TCGA-CN-5360-01A-01D-1431-02	TCGA-CN-5361-01A-01D-1431-02	TCGA-CN-5363-01A-01D-1431-02	TCGA-CN-5364-01A-01D-1431-02	TCGA-CN-5366-01A-01D-1431-02	TCGA-CN-5367-01A-01D-1431-02	TCGA-CN-5369-01A-01D-1431-02	TCGA-CN-5373-01A-01D-1431-02	TCGA-CN-6013-01A-11D-1681-02	TCGA-CN-6017-01A-11D-1681-02	TCGA-CN-6018-01A-11D-1681-02	TCGA-CN-6019-01A-11D-1681-02	TCGA-CN-6996-01A-11D-1911-02	TCGA-CN-6998-01A-23D-2317-26	TCGA-CQ-5325-01A-01D-1681-02	TCGA-CQ-5327-01A-01D-1681-02	TCGA-CQ-5329-01A-01D-1681-02	TCGA-CQ-5330-01A-01D-1681-02	TCGA-CQ-6219-01A-11D-1911-02	TCGA-CQ-6220-01A-11D-1911-02	TCGA-CQ-6221-01A-11D-2317-26	TCGA-CQ-6223-01A-11D-1911-02	TCGA-CQ-6224-01A-11D-1911-02	TCGA-CQ-6225-01A-11D-1911-02	TCGA-CQ-6229-01A-11D-1911-02	TCGA-CQ-7065-01A-11D-2317-26	TCGA-CQ-7068-01A-11D-2317-26	TCGA-CV-5431-01A-01D-1509-02	TCGA-CV-5439-01A-01D-1681-02	TCGA-CV-5966-01A-11D-1681-02	TCGA-CV-5970-01A-11D-1681-02	TCGA-CV-5971-01A-11D-1681-02	TCGA-CV-5973-01A-11D-1681-02	TCGA-CV-5976-01A-11D-1681-02	TCGA-CV-5977-01A-11D-1681-02	TCGA-CV-6003-01A-11D-1681-02	TCGA-CV-6436-01A-11D-1681-02	TCGA-CV-6441-01A-11D-1681-02	TCGA-CV-6933-01A-11D-1911-02	TCGA-CV-6938-01A-11D-1911-02	TCGA-CV-6939-01A-11D-1911-02	TCGA-CV-6945-01A-11D-1911-02	TCGA-CV-6948-01A-11D-1911-02	TCGA-CV-6951-01A-11D-1911-02	TCGA-CV-6952-01A-11D-1911-02	TCGA-CV-6954-01A-11D-1911-02	TCGA-CV-6959-01A-11D-1911-02	TCGA-CV-6960-01A-41D-2317-26	TCGA-CV-7091-01A-11D-2317-26	TCGA-CV-7095-01A-21D-2317-26	TCGA-CV-7178-01A-21D-2317-26	TCGA-CV-7183-01A-11D-2317-26	TCGA-CV-7238-01A-11D-2317-26	TCGA-CV-7247-01A-11D-2317-26	TCGA-CV-7263-01A-11D-2317-26	TCGA-CV-7407-01A-11D-2317-26	TCGA-CV-7411-01A-11D-2317-26	TCGA-CV-7414-01A-11D-2317-26	TCGA-CV-7428-01A-11D-2317-26	TCGA-CV-7429-01A-11D-2317-26	TCGA-CV-7432-01A-11D-2317-26	TCGA-CV-7434-01A-11D-2317-26	TCGA-CX-7085-01A-21D-2317-26	TCGA-D6-6515-01A-21D-1868-02	TCGA-D6-6517-01A-11D-1868-02	TCGA-D6-6823-01A-11D-1911-02	TCGA-D6-6825-01A-21D-1911-02	TCGA-D6-6826-01A-11D-1911-02	TCGA-D6-6827-01A-11D-1911-02	TCGA-DQ-5624-01A-01D-1868-02	TCGA-DQ-5625-01A-01D-1868-02	TCGA-DQ-5630-01A-01D-1868-02	TCGA-DQ-5631-01A-01D-1868-02	TCGA-H7-7774-01A-21D-2317-26	TCGA-IQ-7632-01A-11D-2317-26	
Amplification Peak  1	2q11.2 	chr2:97149467-99094706(probes 1478:1499)    	chr2:97504221-98285966(probes 1481:1487)    	chr2:97504221-99114869(probes 1481:1501)    	0.12902	    0.12902		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  2	7p11.2 	chr7:54959582-55684153(probes 7072:7095)    	chr7:55066674-55271334(probes 7077:7084)    	chr7:52840694-63501388(probes 7037:7129)    	1.9965e-12	 1.9965e-12		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	2	2	0	0	1	0	0	1	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	1	2	2	1	2	0	0	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	1	1	2	1	0	0	0	2	
Amplification Peak  3	7q21.3 	chr7:87928365-104608925(probes 7282:7377)  	chr7:92958178-93204033(probes 7308:7309)    	chr7:87928366-104002274(probes 7283:7372)  	0.014542	   0.014542		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	2	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	
Amplification Peak  4	8p11.23	chr8:38021977-38562621(probes 7965:7978)    	chr8:38281648-38285105(probes 7972:7973)    	chr8:37185847-40526848(probes 7932:8026)    	3.5867e-06	 3.5867e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	1	1	2	2	0	2	0	1	0	1	0	1	0	0	0	0	1	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  5	8q11.21	chr8:49126904-50064004(probes 8105:8120)    	chr8:49270422-49569938(probes 8106:8111)    	chr8:49270422-50087234(probes 8106:8122)    	0.077813	   0.077813		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	2	0	0	2	1	1	1	1	2	2	1	1	0	1	0	1	2	1	0	1	2	0	1	1	0	2	1	0	0	0	1	0	1	1	0	0	1	0	0	0	1	1	0	0	2	2	0	0	0	0	1	1	0	1	1	0	0	1	0	0	2	1	2	2	0	0	0	0	0	1	2	1	1	0	1	1	1	1	2	0	1	1	1	1	0	0	2	0	0	2	0	0	1	2	0	1	0	1	2	1	0	0	0	
Amplification Peak  6	9p22.3 	chr9:9870217-16803132(probes 8783:8865)      	chr9:14915898-15101941(probes 8831:8834)    	chr9:13397965-16803132(probes 8817:8865)    	0.051479	   0.051479		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	2	0	0	0	0	2	0	1	0	2	0	1	0	0	0	0	0	2	0	1	0	2	1	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	
Amplification Peak  7	11q13.3	chr11:69545150-70374929(probes 10912:10933)	chr11:69718775-70319230(probes 10929:10930)	chr11:68239923-71771385(probes 10801:11049)	1.71e-29	   1.71e-29		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	2	2	2	0	0	1	0	1	0	0	0	1	0	0	2	0	0	1	0	0	2	0	1	0	2	0	0	2	0	0	0	0	2	2	2	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	0	2	0	0	1	0	2	1	2	2	0	0	1	0	0	2	0	2	0	0	1	1	0	2	2	0	0	2	0	1	0	2	0	0	2	1	0	0	1	0	2	2	1	0	2	0	2	0	0	
Amplification Peak  8	12q15  	chr12:69017418-70739579(probes 11956:11981)	chr12:69703695-69802930(probes 11965:11968)	chr12:69219805-70781203(probes 11957:11983)	0.032041	   0.032041		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	
Amplification Peak  9	17q12  	chr17:37561554-38464082(probes 14613:14624)	chr17:37634630-38024271(probes 14614:14623)	chr17:37634630-38531363(probes 14614:14626)	0.14197	    0.14197		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 10	18q11.2	chr18:19750821-24904993(probes 15040:15157)	chr18:20662673-20702507(probes 15055:15056)	chr18:20662673-21268769(probes 15055:15059)	0.19237	    0.19237		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	1	2	0	0	0	0	0	1	0	2	1	2	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 1	9p21.3	chr9:21969802-21994304(probes 8990:8999)	chr9:21973950-21979760(probes 8995:8996)	chr9:21513665-22451182(probes 8939:9053)	1.029e-14	 1.029e-14		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	2	0	1	1	0	0	1	0	0	0	0	1	0	0	1	1	1	1	1	0	1	2	0	1	0	1	1	0	1	1	0	1	1	1	1	0	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	2	1	0	1	0	1	1	1	1	1	1	0	1	1	0	0	1	2	1	0	0	1	2	0	1	0	0	1	1	0	0	0	0	1	1	1	1	0	1	1	1	2	1	0	2	1	0	0	0	1	1	0	1	1	1	
Amplification Peak  1 - CN values	2q11.2 	chr2:97149467-99094706(probes 1478:1499)    	chr2:97504221-98285966(probes 1481:1487)    	chr2:97504221-99114869(probes 1481:1501)    	0.12902	    0.12902		Actual Copy Change Given	0.059099	0.5232	0.81911	-0.001095	0	-0.021247	0.00052734	0.055952	0.28579	-0.091561	-0.0044689	-0.17295	0.018391	0.0097333	-0.084649	0.0074452	0.036602	0.4048	-0.014754	0.011736	-0.0094538	0.017087	0	0.036529	-0.15399	6	0	-0.1012	0.0021316	-0.034807	0.24461	-0.033025	0.15633	0.13619	-0.019906	-0.052147	0.012038	0.19183	0	-0.0057904	0.012408	-0.040914	-0.1611	0.038869	0.048107	-0.030679	0.17574	0.00084356	0.046611	0	0.0041519	-0.086826	0	0.008914	-0.012949	-0.022067	0.25191	-0.0092591	-0.025287	0.0018715	0.54977	-0.0047202	-0.0067159	-0.0031523	0	6	0.0051251	-0.33408	-0.20229	0.013661	0.031465	0.32301	-0.0084386	-0.010311	-0.22311	0.023056	0.47177	0.010467	0.022258	-0.0068723	2.447	-0.34398	0.031562	0.44111	0.0015959	-0.015458	0.068827	0.040646	0.12638	0.0033592	0.44064	-0.056951	0.0040536	0.023823	0.041777	-0.00021696	-0.048282	-0.0008556	0.034651	0.0022403	-0.28049	0.017826	-0.0061112	-0.021378	0.060922	-0.015693	-0.016722	-0.013542	
Amplification Peak  2 - CN values	7p11.2 	chr7:54959582-55684153(probes 7072:7095)    	chr7:55066674-55271334(probes 7077:7084)    	chr7:52840694-63501388(probes 7037:7129)    	1.9965e-12	 1.9965e-12		Actual Copy Change Given	0.61553	2.5102	5.9778	0.009944	0.016386	0.82766	-0.0042356	-0.0082303	0.35494	0.040601	-0.0028931	-0.23711	0.0019737	2.4356	-0.08692	0.32304	0.059162	-0.010241	0.13621	0.88646	0.2627	0.22532	-0.027096	0.024032	0.0063139	0.63551	3.6449	0.17864	-0.0015893	-0.0019497	-0.01074	0.033161	0.16247	-0.035805	0.76503	0.13437	0.0026716	0.16557	0.074645	-0.0014533	0.015373	0.33629	-0.063436	0.039666	0.088957	0.21875	-0.2609	-0.0034013	0	1.1361	3.0325	0.21093	0.24517	-0.0059873	0.069252	0.1302	0.2645	2.6166	0.024465	1.2566	1.4264	0.2848	0	0.0016513	0.081591	0.0017161	6	-0.31183	-0.16965	-0.00031666	0.023881	6	-0.011766	-0.0070985	0.068811	0.035477	0.95915	-0.0021534	0.43946	6	6	0.47012	3.5498	-0.0066449	0.049135	0.049984	0.59712	0.023825	0.26209	-0.0030213	0.017829	0.036029	3.6585	0.025915	-0.0094273	-0.011681	-0.02367	1.6878	0.022838	-0.010804	0.33989	0.52712	3.713	0.40045	0.045113	0.2373	0.064523	6	
Amplification Peak  3 - CN values	7q21.3 	chr7:87928365-104608925(probes 7282:7377)  	chr7:92958178-93204033(probes 7308:7309)    	chr7:87928366-104002274(probes 7283:7372)  	0.014542	   0.014542		Actual Copy Change Given	-0.53011	0.065532	0.2353	0.009944	0.016386	0.016983	-0.0042356	0.0077067	-0.013107	0.040601	-0.0028931	-0.22809	-0.010358	-0.53873	-0.08692	0.32304	0.059162	0.39744	0.13621	-0.34732	-0.61807	-0.040818	-0.015402	0.91538	0.0063139	-0.30785	0.16605	0.17864	3.8114	-0.0019497	-0.0089904	0.033161	0.16247	0.27655	-0.016825	0.47802	0.0026716	0.22565	0.09283	0.0009978	0.34188	1.5303	0.021603	-0.23235	0.016822	-0.1482	-0.26512	-0.0034013	0	0.00066908	-0.003188	-0.092554	-0.27243	-0.0059873	0.020799	-0.022011	0.30634	0	0.024465	-0.010055	1.7979	0.2848	0	0.0016513	0.081591	0.0017161	0.0088169	-0.31183	-0.16965	-0.00031666	0.89083	2.7225	-0.011766	-0.0070985	0.050833	0.04541	0.50748	-0.0021534	-0.40741	-0.0065879	3.8606	-0.29516	0.011139	0.88357	0.049135	0.049984	6	0.023825	0.26209	-0.0030213	3.2497	0.036029	-0.20403	0.025915	-0.0094273	0.0022424	-0.068837	-0.016985	-0.28023	-0.010804	0.32974	0.52712	0.0070424	0.41404	-0.01561	0.24306	0.064523	-0.079329	
Amplification Peak  4 - CN values	8p11.23	chr8:38021977-38562621(probes 7965:7978)    	chr8:38281648-38285105(probes 7972:7973)    	chr8:37185847-40526848(probes 7932:8026)    	3.5867e-06	 3.5867e-06		Actual Copy Change Given	-0.54134	1.4694	-0.8328	0.0038258	0.0097115	-0.39349	-0.25922	0.0012993	0	-0.28822	-0.4529	0.69589	0.74889	6	1.1473	0.0065006	6	-0.4352	0.80489	-0.0012615	0.42743	-0.16075	0.46132	0.05302	-0.36845	-0.10766	-0.15573	0.56167	3.6737	0.033475	-0.26349	0.45871	0.19398	-0.18366	1.6014	-0.22936	0	-0.25091	-0.38015	-0.061626	-0.48211	-0.53518	0.012856	0.53161	0.019675	-0.37075	-0.011913	-0.20166	0.00018849	-0.092379	-0.27502	-0.25217	-0.0042685	0.013273	0.081271	0.19423	4.6279	0.6626	-0.75764	0.5894	0.10178	0.0057714	-0.42583	-0.10037	0.030605	-0.51328	-0.56193	-0.3414	0.55852	-0.21251	5.7156	-0.51188	0.047012	-0.021086	0.054063	-0.79885	-0.051234	-0.53336	3.246	-0.36317	-0.62204	0.033683	2.0094	-0.00089223	-0.0054837	-0.18489	-0.49805	0.30065	1.2864	0.0018598	3.2173	0.012388	-0.13163	-0.11755	-0.72621	0.01135	0.050474	-0.36259	0.0087816	-0.43175	0.028015	-0.02528	0.087437	-0.49197	-0.1413	0.24816	0.016612	0.080577	
Amplification Peak  5 - CN values	8q11.21	chr8:49126904-50064004(probes 8105:8120)    	chr8:49270422-49569938(probes 8106:8111)    	chr8:49270422-50087234(probes 8106:8122)    	0.077813	   0.077813		Actual Copy Change Given	0.020156	0.82424	-0.82929	0.0038258	0.0097115	1.2012	0.075859	0.0012993	1.8028	0.34735	0.43183	0.62845	0.74889	1.6557	1.1473	0.35848	0.46678	0.01925	0.80489	-0.0012615	0.42743	2.1851	0.51706	0.05302	0.51373	1.0477	0.23953	0.56167	0.66844	0.033475	6	0.45871	0.19398	-0.20305	-0.35107	0.43958	0	0.58869	0.31637	0.025428	0.14849	0.43607	0.070689	0.083965	0.041876	0.54544	0.76002	0.24425	0.00018849	1.1358	1.5602	0.241	-0.0042685	0.013273	0.060056	0.55762	0.34354	0.18123	0.74135	0.5894	-0.19233	0.0057714	0.39767	0.045746	0.030605	1.0417	0.55254	2.0424	0.93071	0.22145	0.015112	0.23153	0.047012	-0.021086	0.6377	0.90837	0.50654	0.52054	0.097149	0.32442	0.61696	0.32841	0.6048	6	-0.0054837	0.45826	0.4331	0.3102	0.5959	0.0018598	0.0032383	0.99019	-0.13163	-0.11755	1.3751	0.01135	-0.023985	0.49913	0.97789	0.020357	0.32693	-0.02528	0.75435	1.3496	0.30178	-0.10159	0.016612	0.11185	
Amplification Peak  6 - CN values	9p22.3 	chr9:9870217-16803132(probes 8783:8865)      	chr9:14915898-15101941(probes 8831:8834)    	chr9:13397965-16803132(probes 8817:8865)    	0.051479	   0.051479		Actual Copy Change Given	-0.5096	-0.025629	-0.83068	0	-0.84545	-0.38495	0.00021113	0	-0.3785	0.18829	-0.016578	0.56547	-0.0074944	-0.52241	-0.099358	-0.011187	0.46041	-0.39914	-0.30106	-0.4203	-0.643	-0.31793	1.0068	-0.65855	-0.0058779	-0.38057	-0.151	-0.00076974	-0.22984	0.0097245	-0.27004	0.33714	-0.12031	-1.123	-0.33643	2.2306	-0.019515	0	6	0.0084225	-0.42941	-0.10948	0.069819	1.5088	-0.27227	0.3573	0.016866	1.2542	0.050066	0.53242	0.26552	0.14621	-0.005672	-0.68373	0.11038	1.7612	-0.61086	0.40124	-0.75657	1.8548	0.59224	-0.31695	0.66675	-0.018326	0.050162	-0.49877	-0.55451	0.43374	-0.071735	0.40661	-0.45023	-0.48867	0.14041	0.30091	-0.53466	-0.79045	-0.026717	0.49039	-0.0015944	-0.0067965	-0.61173	-0.33017	0.13507	-0.013418	0.0040861	-0.2077	-0.52825	-0.5764	4.9914	0.010109	0	0.21452	0.55061	-0.34766	3.5541	0.028776	0.17388	0.034632	-0.57794	-0.013259	-0.28699	-0.078537	-0.19645	0.44555	-0.22201	-0.41204	0.36564	-0.083213	
Amplification Peak  7 - CN values	11q13.3	chr11:69545150-70374929(probes 10912:10933)	chr11:69718775-70319230(probes 10929:10930)	chr11:68239923-71771385(probes 10801:11049)	1.71e-29	   1.71e-29		Actual Copy Change Given	6	6	6	1.9614	6	6	0.0027176	-0.76569	0.65768	-0.044729	0.84722	-0.078425	-0.0015926	-0.010119	0.3761	0	0.0080103	2.5466	-0.088924	0.0041128	0.65412	-0.20362	0.0049156	6	-0.18656	0.31179	0.25157	1.872	0.23656	-0.011649	6	0.22674	-0.12187	-0.091796	-0.46294	4.2038	2.1691	1.9875	6	0.0074852	0.15467	5.681	0.023929	0.060061	0	0.1254	-0.25513	0.19923	-0.014775	1.1338	0.0023215	0.0076858	0.0075176	6	0	-0.22751	0.21743	0.2542	0.71334	-0.0077165	3.3365	-0.12678	0.012356	0.89558	0.025376	2.6648	0.62167	6	1.0429	0.0039093	-0.36471	0.74502	0.0079008	-0.46919	6	0.059938	0.91294	-0.0011326	0	0.34027	0.6131	0.058355	3.6955	3.909	0.0031112	0.0040603	6	-0.28147	0.33342	0.0050761	6	0	0	6	0.33283	0.029691	-0.082301	0.39106	0.01641	5.3892	2.281	0.72353	0.056008	6	-0.043165	1.3904	0.013591	-0.060877	
Amplification Peak  8 - CN values	12q15  	chr12:69017418-70739579(probes 11956:11981)	chr12:69703695-69802930(probes 11965:11968)	chr12:69219805-70781203(probes 11957:11983)	0.032041	   0.032041		Actual Copy Change Given	0.012662	-0.13823	0.0085991	0.018802	0.03785	0.024829	0	0.026987	0.025509	-0.048685	0	0.58997	0.76207	-0.006121	0.38956	-0.025251	0.39428	0.53962	-0.28724	0.001777	-0.01145	0.013916	0.51807	0.032693	0.0083489	0.2671	-0.027529	0.14482	0.0025677	0.0015739	-0.0049193	-0.14522	0.11947	0.16161	0.017249	-0.044071	-0.0025558	-9.5805e-05	-0.013943	-0.0041401	0.0076696	0.013159	-0.025235	0.029738	-0.10365	0.13872	0	0.0015811	0.0067094	-0.0028377	-0.010452	-0.11858	0.14558	0.0016849	-0.078419	0.156	-0.22161	0.096076	-0.00031033	0	0	0.015653	0.0098917	0.0030582	0.02846	0.008966	-0.21037	-0.3345	-0.1517	-0.0015816	0.026163	-0.12813	-0.014081	0	-0.23546	1.8487	0.043844	0.0022554	0.010877	0.34404	-0.60796	6	0.018521	-0.0014509	-0.0037037	-0.0096186	0.12766	-0.25013	0.31488	-0.0010011	0.017484	6	0.030211	-0.097203	-0.00026706	0	0.12104	-0.027726	0.050666	-0.0062101	6	0	-0.16721	0.028049	-0.015056	-0.078625	0.56343	0.10775	
Amplification Peak  9 - CN values	17q12  	chr17:37561554-38464082(probes 14613:14624)	chr17:37634630-38024271(probes 14614:14623)	chr17:37634630-38531363(probes 14614:14626)	0.14197	    0.14197		Actual Copy Change Given	0.0363	-0.15437	-0.023929	-0.013353	-0.012009	0.05632	0.0027014	0.10771	0.00051864	0.027427	0.010232	-0.19421	-0.037408	-0.10104	0.33899	-0.095159	-0.074656	-0.067923	0.072456	0.069431	-0.069977	-0.20248	-0.055747	-0.069727	-0.045022	0.2362	-0.023373	-0.11247	-0.0068943	-0.024583	0.0036692	0.057464	0.22045	0.05869	-0.034201	0.011924	0.020195	0.46438	0.0019926	0.035692	0.051812	-0.11002	-0.1373	-0.01748	-0.0074811	0.12837	0.025744	0.023046	0.008206	-0.036194	0.0037586	0.11055	0.34832	-0.34455	0.071646	-0.23641	6	0.0045294	-0.010002	0.0075922	6	-0.031842	-0.1646	0.26945	-0.027824	-0.0067422	-0.0090586	0.51925	0.22525	-0.0029765	0.040169	0.18821	-0.053824	0.054594	0	0.081483	0.45076	0.0077616	-0.022051	0.022919	-0.026416	-0.33376	-0.12172	-0.0082712	-0.0027884	-0.01913	0.11488	0.0093393	-0.038814	-0.023739	3.5652	0.0014101	-0.20131	-0.0036229	0.026616	-0.029554	-0.17645	-0.15435	-0.21332	-0.039724	-0.27731	-0.015231	-0.22173	-0.061093	-0.037287	-0.058343	-0.033954	0.091504	
Amplification Peak 10 - CN values	18q11.2	chr18:19750821-24904993(probes 15040:15157)	chr18:20662673-20702507(probes 15055:15056)	chr18:20662673-21268769(probes 15055:15059)	0.19237	    0.19237		Actual Copy Change Given	1.9154	0.3406	3.3687	-0.0096466	0.0098392	-0.019266	0.21494	0.00030208	0.30303	-0.21154	0.90435	0.3739	1.6404	2.2498	0.44577	0.024876	-0.17415	-0.401	0.15646	0.67034	-0.016724	-0.23671	-0.018054	0.0028983	0.19816	-0.084791	-0.014112	-0.17593	-0.02503	0.023958	-0.015718	-0.45087	-0.13408	0.12695	0.069875	-0.23207	0.01141	-0.2536	0.10122	-0.0082345	-0.03403	-0.17727	-0.080837	-0.021475	0.015333	0.02404	-0.26277	-0.19925	-0.0059988	0.0053013	-0.0071695	-0.23824	0.011288	-0.00652	-0.34676	-0.011951	-0.72337	0.19477	0.68911	-0.01729	-0.012102	0.6598	-0.17916	-0.34527	-0.019254	0.01334	-0.001308	0.53088	-0.5681	-0.0021988	-0.39903	-0.48845	-0.030445	-0.0036091	-0.5197	0.074988	0.39594	0.0049564	6	-0.012658	-0.55056	-0.33848	-0.18726	-0.016252	0.00045492	-0.050036	-0.084475	-0.2816	-0.32689	-0.0029776	-0.0031903	-0.022685	-0.48476	-0.31699	2.2066	-0.018341	-0.00040475	-0.094067	-0.11532	-0.40483	-0.0054681	-0.00096959	-0.2202	-0.041695	-0.073587	0.035932	-0.011928	-0.067434	
Deletion Peak 1 - CN values	9p21.3	chr9:21969802-21994304(probes 8990:8999)	chr9:21973950-21979760(probes 8995:8996)	chr9:21513665-22451182(probes 8939:9053)	1.029e-14	 1.029e-14		Actual Copy Change Given	-1.1293	-0.025629	-1.5	0	-0.84545	-0.38495	0.00021113	0	-0.3785	0.18829	-0.016578	0.56547	-0.0074944	-0.52241	-0.099358	-0.011187	-0.66196	-1.1542	-0.30106	-0.4203	-0.643	-0.25029	-0.49439	-1.3507	-0.0058779	-0.38057	-0.151	-0.88968	-0.71014	0.0097245	-0.73276	-0.88133	-0.12031	-1.123	-0.71171	-0.57006	-0.45884	0	-1.0941	-0.39199	-0.42941	-0.014089	0.069819	-0.83301	-0.6115	0.3163	-0.50961	-0.16424	-0.8977	0.53242	0.26552	0.14621	-0.005672	-1.3909	-0.62338	-0.1037	-0.61086	0.40124	-0.75657	-1.257	-0.89929	-0.31695	-0.72427	-1.035	0.050162	-0.49877	-0.55451	0.43374	0	-0.35506	-1.5	-0.48867	0.14041	0.30091	-0.53466	-1.5	-0.026717	-1.0315	-0.0015944	-0.0067965	-0.61173	-0.33017	0.046454	-0.013418	0.0040861	-0.2077	-0.52825	-0.5764	-0.67398	-0.76742	0	-1.1911	-1.0273	-0.34766	-1.4333	-0.50206	0.22666	-1.3062	-1.1984	-0.013259	-0.27697	-0.078537	-0.37923	-0.99504	-0.2896	-0.41204	-1.1461	-0.44296	
