[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  METHYLATION"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                              Clinical feature               
DAYS_TO_DEATH_OR_LAST_FUP     "DAYS_TO_DEATH_OR_LAST_FUP"    
YEARS_TO_BIRTH                "YEARS_TO_BIRTH"               
PATHOLOGIC_STAGE              "PATHOLOGIC_STAGE"             
PATHOLOGY_T_STAGE             "PATHOLOGY_T_STAGE"            
PATHOLOGY_N_STAGE             "PATHOLOGY_N_STAGE"            
PATHOLOGY_M_STAGE             "PATHOLOGY_M_STAGE"            
GENDER                        "GENDER"                       
KARNOFSKY_PERFORMANCE_SCORE   "KARNOFSKY_PERFORMANCE_SCORE"  
NUMBER_PACK_YEARS_SMOKED      "NUMBER_PACK_YEARS_SMOKED"     
YEAR_OF_TOBACCO_SMOKING_ONSET "YEAR_OF_TOBACCO_SMOKING_ONSET"
RACE                          "RACE"                         
ETHNICITY                     "ETHNICITY"                    
                              Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP     "Cox regression test"       "N=30"           
YEARS_TO_BIRTH                "Spearman correlation test" "N=30"           
PATHOLOGIC_STAGE              "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE             "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE             "Spearman correlation test" "N=30"           
PATHOLOGY_M_STAGE             "Wilcoxon test"             "N=0"            
GENDER                        "Wilcoxon test"             "N=2"            
KARNOFSKY_PERFORMANCE_SCORE   "Wilcoxon test"             "N=0"            
NUMBER_PACK_YEARS_SMOKED      "Spearman correlation test" "N=30"           
YEAR_OF_TOBACCO_SMOKING_ONSET "Spearman correlation test" "N=0"            
RACE                          "Kruskal-Wallis test"       "N=0"            
ETHNICITY                     "Wilcoxon test"             "N=0"            
                              Associated with                  
DAYS_TO_DEATH_OR_LAST_FUP     "shorter survival"               
YEARS_TO_BIRTH                "older"                          
PATHOLOGIC_STAGE              " "                              
PATHOLOGY_T_STAGE             "higher stage"                   
PATHOLOGY_N_STAGE             "higher stage"                   
PATHOLOGY_M_STAGE             " "                              
GENDER                        "male"                           
KARNOFSKY_PERFORMANCE_SCORE   " "                              
NUMBER_PACK_YEARS_SMOKED      "higher number_pack_years_smoked"
YEAR_OF_TOBACCO_SMOKING_ONSET " "                              
RACE                          " "                              
ETHNICITY                     " "                              
                              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP     "N=25"                                                                                    
YEARS_TO_BIRTH                "N=24"                                                                                    
PATHOLOGIC_STAGE              " "                                                                                       
PATHOLOGY_T_STAGE             "N=29"                                                                                    
PATHOLOGY_N_STAGE             "N=29"                                                                                    
PATHOLOGY_M_STAGE             " "                                                                                       
GENDER                        "N=2"                                                                                     
KARNOFSKY_PERFORMANCE_SCORE   " "                                                                                       
NUMBER_PACK_YEARS_SMOKED      "N=28"                                                                                    
YEAR_OF_TOBACCO_SMOKING_ONSET " "                                                                                       
RACE                          " "                                                                                       
ETHNICITY                     " "                                                                                       
                              Associated with                       
DAYS_TO_DEATH_OR_LAST_FUP     "longer survival"                "N=5"
YEARS_TO_BIRTH                "younger"                        "N=6"
PATHOLOGIC_STAGE              " "                              " "  
PATHOLOGY_T_STAGE             "lower stage"                    "N=1"
PATHOLOGY_N_STAGE             "lower stage"                    "N=1"
PATHOLOGY_M_STAGE             " "                              " "  
GENDER                        "female"                         "N=0"
KARNOFSKY_PERFORMANCE_SCORE   " "                              " "  
NUMBER_PACK_YEARS_SMOKED      "lower number_pack_years_smoked" "N=2"
YEAR_OF_TOBACCO_SMOKING_ONSET " "                              " "  
RACE                          " "                              " "  
ETHNICITY                     " "                              " "  
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
