		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (2%)	188	0.00394	0.0185	0.20913	0.35	0.18687	0.328	0.58865	0.731	0.092689	0.187	0.093719	0.187
4p gain	4 (2%)	187	0.02765	0.0769	0.0074999	0.0277	NA	NA	NA	NA	0.34134	0.5	0.83449	0.961
4q gain	4 (2%)	187	0.02922	0.079	0.0079499	0.0288	NA	NA	NA	NA	0.34121	0.5	0.83585	0.961
8p gain	22 (12%)	169	0.00080999	0.00778	0.00025	0.0032	0.02854	0.0783	0.00087999	0.00805	0.0098499	0.035	0.01668	0.05
8q gain	23 (12%)	168	0.00138	0.0102	0.00039	0.0044	0.01404	0.0453	0.00174	0.0111	0.0068999	0.026	0.01377	0.0453
10q gain	3 (2%)	188	0.01417	0.0453	0.20856	0.35	0.18492	0.328	0.58986	0.731	0.55328	0.708	0.090899	0.187
11p gain	4 (2%)	187	0.00064999	0.00693	0.43241	0.596	0.46675	0.626	0.36654	0.53	0.52275	0.68	0.02219	0.0636
11q gain	7 (4%)	184	2e-05	0.00048	0.03082	0.0822	0.067599	0.149	0.075069	0.162	0.29116	0.444	0.01555	0.0482
13q gain	6 (3%)	185	0.04203	0.106	0.0066699	0.0257	0.12297	0.236	0.083199	0.176	0.80205	0.933	0.073599	0.161
17q gain	3 (2%)	188	0.0065699	0.0257	0.70352	0.839	1	1	0.58716	0.731	0.48258	0.637	0.30501	0.461
19p gain	5 (3%)	186	0.01343	0.0452	0.2457	0.385	1	1	0.86305	0.961	0.58032	0.731	1	1
19q gain	5 (3%)	186	0.01276	0.0445	0.2461	0.385	1	1	0.86435	0.961	0.57879	0.731	1	1
21q gain	8 (4%)	183	9.9999e-06	0.00048	0.11301	0.219	0.12536	0.238	0.52393	0.68	0.081069	0.173	0.41182	0.581
22q gain	9 (5%)	182	0.00098999	0.00826	0.00384	0.0184	0.13662	0.257	0.01608	0.049	0.055499	0.132	0.01306	0.0448
xp gain	3 (2%)	188	0.00196	0.0121	0.70379	0.839	NA	NA	NA	NA	0.89186	0.978	0.04699	0.115
xq gain	3 (2%)	188	0.00201	0.0121	0.7001	0.839	NA	NA	NA	NA	0.88995	0.978	0.04548	0.113
3p loss	3 (2%)	188	0.0066799	0.0257	0.20977	0.35	0.78441	0.922	1	1	0.063289	0.145	0.091969	0.187
3q loss	3 (2%)	188	0.0065799	0.0257	0.21222	0.351	0.78503	0.922	1	1	0.062689	0.145	0.091339	0.187
5q loss	6 (3%)	185	5e-05	0.00096	0.0064099	0.0257	0.22605	0.365	0.6303	0.768	0.03141	0.0826	0.03217	0.0835
7p loss	17 (9%)	174	4e-05	0.000853	0.00019	0.00261	0.00095999	0.00826	2e-05	0.00048	0.00373	0.0184	0.00346	0.0184
7q loss	20 (10%)	171	9.9999e-06	0.00048	9.9999e-06	0.00048	0.0060899	0.0257	2e-05	0.00048	0.00148	0.0105	0.00077999	0.00778
12p loss	4 (2%)	187	0.0061299	0.0257	0.43087	0.596	0.37415	0.536	0.38903	0.553	0.48444	0.637	0.18602	0.328
15q loss	4 (2%)	187	0.00027	0.00324	0.54903	0.707	0.066559	0.149	0.36696	0.53	0.02267	0.064	0.18278	0.328
16q loss	4 (2%)	187	0.0011	0.0088	0.056499	0.132	0.78745	0.922	1	1	0.01517	0.0477	0.02163	0.0629
17p loss	13 (7%)	178	9.9999e-06	0.00048	0.00169	0.0111	0.15374	0.287	0.00164	0.0111	0.16128	0.298	0.00359	0.0184
17q loss	7 (4%)	184	2e-05	0.00048	0.11307	0.219	0.066869	0.149	0.23738	0.38	0.03689	0.0944	0.04721	0.115
18p loss	5 (3%)	186	0.00012	0.00177	0.02132	0.0629	1	1	0.86477	0.961	0.25208	0.387	0.18535	0.328
18q loss	4 (2%)	187	0.00132	0.0101	0.055689	0.132	0.46931	0.626	0.86212	0.961	0.10236	0.203	0.18783	0.328
19p loss	4 (2%)	187	0.00295	0.0172	0.43485	0.596	0.46674	0.626	0.86301	0.961	0.30989	0.461	0.24757	0.385
19q loss	4 (2%)	187	0.00309	0.0172	0.43142	0.596	0.46654	0.626	0.86569	0.961	0.30892	0.461	0.24866	0.385
xp loss	5 (3%)	186	9.9999e-05	0.00175	0.19938	0.345	0.22432	0.365	0.63235	0.768	0.00369	0.0184	0.00483	0.0216
xq loss	5 (3%)	186	0.00011	0.00176	0.20177	0.346	0.22471	0.365	0.63061	0.768	0.00313	0.0172	0.00476	0.0216
