gene1	gene2	pval	qval
1p-Del	Del_5p15.33	0.000106	1
Amp_7p11.2	Del_1p36.32	0.000108	1
Del_1p32.3	Del_22q13.31	0.000126	1
CIC	Amp_10p15.3	0.000134	1
CIC	7q-Amp	0.000137	1
CIC	Amp_7p11.2	0.000137	1
7p-Amp	Del_19q13.42	0.000157	1
6q-Del	Del_1p36.32	0.00016	1
6q-Del	Del_1p32.3	0.000174	1
1p-Del	9p-Del	0.000187	1
19q-Del	6q-Del	0.000206	1
19q-Del	Del_2q37.3	0.000207	1
PIK3CA	TP53	0.000217	1
Amp_12p13.32	Del_1p36.32	0.000232	1
ATRX	Amp_7p11.2	0.000246	1
Del_1p36.32	Del_5q34	0.000248	1
FUBP1	Amp_7q32.3	0.000251	1
19q-Del	Del_6q22.31	0.000258	1
Del_1p32.3	Del_5q34	0.000264	1
PTEN	Del_19q13.41	0.000267	1
Del_11p15.5	Del_19q13.41	0.000283	1
CIC	6q-Del	0.00029	1
TP53	19p-Amp	0.000298	1
CIC	Del_2q37.3	0.000301	1
Del_11p15.5	Del_19q13.42	0.000315	1
10p-Amp	19q-Del	0.000352	1
19q-Del	22q-Del	0.000352	1
7p-Amp	Del_19q13.41	0.000401	1
10q-Del	Del_1p36.32	0.000468	1
Del_1p36.32	Del_9p23	0.000504	1
1p-Del	Del_3q29	0.000506	1
1p-Del	Del_5q34	0.000506	1
BRAF	IDH1	0.000521	1
9p-Del	Del_1p32.3	0.000537	1
FUBP1	Amp_7q31.2	0.000598	1
Amp_12q14.1	Del_1p36.32	0.000622	1
Del_1p36.32	Del_5p15.33	0.000622	1
Amp_1q32.1	Del_19q13.42	0.000727	1
PTEN	19q-Del	0.000754	1
7p-Amp	1p-Del	0.000754	1
19q-Del	Amp_12q14.1	0.000754	1
19q-Del	Del_5p15.33	0.000754	1
19q-Del	Del_9p23	0.000762	1
NF1	TP53	0.000798	1
Amp_8q24.13	Del_19q13.41	0.00081	1
7p-Amp	19q-Del	0.000891	1
Del_19q13.41	Del_22q13.31	0.000918	1
PTEN	TP53	0.000951	1
PTEN	Del_19q13.42	0.000983	1
Amp_12q14.1	Del_19q13.42	0.000983	1
10p-Del	Del_1p36.32	0.00113	1
Del_3q29	Del_19q13.42	0.00118	1
EGFR	1p-Del	0.00125	1
FUBP1	Del_11p15.5	0.00132	1
PTEN	1p-Del	0.00133	1
1p-Del	Amp_12q14.1	0.00133	1
Del_1p36.32	Del_8q24.3	0.00135	1
19q-Del	Del_6q24.3	0.00148	1
IDH2	TP53	0.00159	1
Amp_10p15.3	Del_19q13.42	0.0016	1
Amp_12q14.1	Del_19q13.41	0.00162	1
Del_19q13.42	Del_22q13.31	0.00164	1
10q-Del	Del_1p32.3	0.00166	1
CIC	10p-Amp	0.00172	1
CIC	22q-Del	0.00172	1
NOTCH1	TP53	0.00173	1
ATRX	Amp_19p13.2	0.00181	1
Del_3q29	Del_19q13.41	0.00183	1
Amp_4q12	Del_19q13.42	0.00193	1
CIC	EGFR	0.00196	1
19q-Del	9p-Del	0.00196	1
CIC	Del_9p23	0.00197	1
FUBP1	Del_9p21.3	0.00198	1
TP53	Amp_7p11.2	0.0023	1
1p-Del	Del_8q24.3	0.00238	1
Del_1p36.32	Del_22q13.31	0.00246	1
19q-Del	Amp_7q32.3	0.00247	1
IDH1	RB1	0.00256	1
Amp_8q24.13	Del_19q13.42	0.00276	1
ATRX	Amp_1q32.1	0.00283	1
ATRX	19p-Amp	0.00284	1
CIC	Del_5p15.33	0.00285	1
FUBP1	7q-Amp	0.00285	1
FUBP1	Amp_7p11.2	0.00285	1
FUBP1	10q-Del	0.00286	1
Del_1p36.32	Del_3q29	0.00288	1
Amp_4q12	Del_19q13.41	0.00293	1
ATRX	14q-Del	0.00295	1
Del_1p32.3	Del_3q29	0.00303	1
8q-Amp	Del_1p32.3	0.00311	1
12q-Del	Del_1p36.32	0.00313	1
Del_1p36.32	Del_3q13.31	0.00313	1
12q-Del	Del_1p32.3	0.00326	1
19q-Del	Del_3q29	0.00336	1
12q-Del	19q-Del	0.00354	1
CIC	Del_6p25.3	0.00366	1
10p-Del	Del_1p32.3	0.00372	1
9p-Del	Del_1p36.32	0.00374	1
CIC	Amp_12p13.32	0.00387	1
1p-Del	Amp_7q32.3	0.00389	1
ZBTB20	Del_9p21.3	0.00391	1
FUBP1	10p-Del	0.00397	1
11p-Del	Del_19q13.41	0.00437	1
ATRX	18p-Del	0.0045	1
TP53	15q-Del	0.0045	1
NIPBL	TP53	0.00463	1
CIC	7p-Amp	0.00467	1
Del_1p36.32	Del_Xq21.1	0.00475	1
19q-Del	Amp_4q12	0.00485	1
ATRX	PTEN	0.00487	1
Del_1p32.3	Del_Xq21.1	0.00494	1
12q-Del	1p-Del	0.00513	1
1p-Del	Del_3q13.31	0.00513	1
PIK3CA	Amp_8q24.13	0.0052	1
NOTCH1	10q-Del	0.0055	1
TP53	18q-Del	0.0058	1
8q-Amp	1p-Del	0.00587	1
CIC	9p-Del	0.00601	1
Amp_7p11.2	Del_1p32.3	0.00603	1
FUBP1	Del_6q24.3	0.00612	1
19q-Del	Amp_7q31.2	0.0064	1
IDH1	Amp_3q26.33	0.00684	1
NOTCH1	Del_10q26.3	0.00705	1
11p-Del	Del_19q13.42	0.00713	1
Amp_1q32.1	Del_19q13.41	0.00732	1
NOTCH1	10p-Del	0.00735	1
IDH1	PTPN11	0.00736	1
Del_1p32.3	Del_12q12	0.0074	1
7q-Amp	19q-Del	0.00746	1
1p-Del	Amp_4q12	0.00746	1
Amp_Xp11.22	Del_1p32.3	0.00748	1
1p-Del	Del_Xq21.1	0.00752	1
FUBP1	Del_11p15.1	0.00759	1
CIC	Del_3q29	0.00773	1
CIC	Del_5q34	0.00773	1
TP53	Amp_1q32.1	0.00778	1
Del_8q24.3	Del_19q13.42	0.00823	1
Del_11p15.1	Del_19q13.41	0.00825	1
19q-Del	Del_12q12	0.0083	1
FUBP1	Del_6q22.31	0.00845	1
Amp_1q32.1	Del_1p36.32	0.00878	1
10q-Del	Amp_8q24.13	0.00879	1
7q-Amp	1p-Del	0.00886	1
1p-Del	Amp_7q31.2	0.00903	1
ATRX	NF1	0.00937	1
19q-Del	Amp_1q32.1	0.00998	1
22q-Del	Del_1p32.3	0.0101	1
Del_11p15.1	Del_19q13.42	0.0107	1
1p-Del	Del_6p25.3	0.0109	1
Amp_13q34	Del_1p36.32	0.0109	1
ATRX	NIPBL	0.011	1
1p-Del	Amp_3q26.33	0.011	1
1p-Del	Amp_Xp11.22	0.011	1
10p-Amp	Del_19q13.41	0.0113	1
Amp_13q34	Del_1p32.3	0.0113	1
ZBTB20	Del_10q26.3	0.0114	1
Del_8q24.3	Del_19q13.41	0.0114	1
ATRX	Del_18q23	0.0117	1
19q-Del	Amp_13q34	0.0121	1
7p-Amp	Del_1p36.32	0.0122	1
Amp_12p13.32	Del_19q13.41	0.0122	1
10p-Del	Amp_8q24.13	0.0123	1
CIC	Amp_19p13.2	0.0127	1
FUBP1	Del_2q37.3	0.0129	1
8q-Amp	Del_1p36.32	0.0131	1
7p-Amp	Del_1p32.3	0.0133	1
1p-Del	Del_12q12	0.0136	1
Amp_7q32.3	Del_1p36.32	0.014	1
IDH2	Del_10q26.3	0.0141	1
19q-Del	Del_8q24.3	0.0142	1
1p-Del	Amp_1q32.1	0.0146	1
ATRX	Del_10q26.3	0.0149	1
8q-Amp	19q-Del	0.0152	1
ATRX	4q-Del	0.0155	1
IDH1	Del_9p23	0.0155	1
Amp_7q32.3	Del_1p32.3	0.0157	1
EGFR	Amp_8q24.13	0.0159	1
Amp_19p13.3	Del_14q24.3	0.0159	1
1p-Del	Amp_13q34	0.0161	1
CIC	Amp_1q32.1	0.0163	1
TP53	ZBTB20	0.0163	1
FUBP1	7p-Amp	0.0164	1
8q-Amp	Del_19q13.41	0.0164	1
7q-Amp	Del_19q13.42	0.0172	1
PIK3CA	Del_2q37.3	0.0173	1
ARID1A	Del_10q26.3	0.0176	1
ANKRD36	Del_19q13.42	0.0177	1
CIC	8q-Amp	0.018	1
Amp_7p11.2	Del_11p15.5	0.0181	1
19q-Del	Del_5q34	0.0182	1
ATRX	Amp_12q14.1	0.0183	1
PTEN	Del_1p32.3	0.0186	1
Amp_12q14.1	Del_1p32.3	0.0186	1
Del_1p32.3	Del_3p21.31	0.0186	1
FUBP1	Del_22q13.31	0.0197	1
10q-Del	Amp_12p13.32	0.0198	1
12q-Del	Del_19q13.42	0.0207	1
CIC	Del_8q24.3	0.0208	1
ATRX	IDH2	0.0213	1
ANKRD36	Del_19q13.41	0.0215	1
FAM47C	Del_10q26.3	0.0218	1
10p-Del	Del_11p15.5	0.0218	1
FUBP1	11p-Del	0.0219	1
Amp_4q12	Del_1p36.32	0.0221	1
CIC	Amp_12q14.1	0.0223	1
10p-Amp	Del_19q13.42	0.0228	1
EGFR	Del_1p36.32	0.0234	1
Del_1p36.32	Del_12q12	0.0245	1
10p-Del	Amp_12p13.32	0.0247	1
EGFR	Del_1p32.3	0.0248	1
Xp-Del	Del_1p36.32	0.0251	1
Xp-Del	Del_1p32.3	0.0258	1
FUBP1	Amp_8q24.13	0.0261	1
Del_1p32.3	Del_3q13.31	0.0268	1
FUBP1	Amp_10p15.3	0.027	1
12q-Del	Del_19q13.41	0.0273	1
19q-Del	Del_6p25.3	0.0275	1
18q-Del	Del_11p15.5	0.0278	1
Amp_7q32.3	Del_19q13.42	0.0282	1
19q-Del	Del_3q13.31	0.0287	1
NOTCH1	Del_22q13.31	0.0305	1
1p-Del	Del_3p21.31	0.0311	1
IDH1	9p-Del	0.0317	1
MYT1	Del_19q13.42	0.0317	1
TRERF1	Del_19q13.42	0.0317	1
PIK3R1	TP53	0.0321	1
Amp_7q31.2	Del_1p36.32	0.0322	1
IDH1	Amp_19p13.3	0.0324	1
8q-Amp	Del_19q13.42	0.0324	1
10q-Del	4q-Del	0.0329	1
11q-Amp	Del_10q26.3	0.0336	1
7q-Amp	Del_5q34	0.0337	1
CIC	12q-Del	0.034	1
CIC	Del_3q13.31	0.034	1
1p-Del	Xp-Del	0.0344	1
Amp_7q31.2	Del_1p32.3	0.0355	1
NF1	Del_19q13.42	0.0367	1
FUBP1	6q-Del	0.0369	1
IDH2	Del_14q24.3	0.0371	1
MYT1	Del_19q13.41	0.0374	1
TRERF1	Del_19q13.41	0.0374	1
10p-Del	4q-Del	0.0398	1
19q-Del	Del_Xq21.1	0.0404	1
FUBP1	Amp_12p13.32	0.0409	1
IDH1	6q-Del	0.0422	1
CIC	Del_Xq21.1	0.0435	1
12q-Del	Amp_7q32.3	0.0435	1
FUBP1	Del_13q14.2	0.0436	1
Del_9p23	Del_19q13.42	0.0436	1
ATRX	Del_14q24.3	0.0451	1
7q-Amp	Del_1p32.3	0.0464	1
14q-Del	Amp_10p15.3	0.0473	1
18q-Del	Amp_8q24.13	0.0475	1
IDH1	Del_6p25.3	0.0484	1
ATRX	ZBTB20	0.0485	1
ATRX	4p-Del	0.0485	1
IDH1	PRX	0.0492	1
IDH1	SETD2	0.0492	1
IDH1	STK19	0.0492	1
EGFR	Del_11p15.5	0.0494	1
Amp_12p13.32	Del_19q13.42	0.0495	1
CIC	Del_12q12	0.05	1
19p-Amp	Del_19q13.42	0.05	1
Amp_19p13.2	Del_19q13.42	0.0501	1
10p-Amp	10p-Del	0.0504	1
PIK3CA	Amp_12p13.32	0.0506	1
TP53	14q-Del	0.0507	1
FAM47C	Del_14q24.3	0.0519	1
NIPBL	Del_14q24.3	0.0519	1
Amp_3q26.33	Del_1p36.32	0.052	1
Amp_Xp11.22	Del_1p36.32	0.052	1
IDH1	Del_14q24.3	0.0529	1
FUBP1	13q-Del	0.0532	1
19p-Amp	Del_1p32.3	0.0534	1
TP53	18p-Del	0.0537	1
ZBTB20	9p-Del	0.0537	1
ZBTB20	Del_13q14.2	0.0537	1
NF1	Del_19q13.41	0.0543	1
CIC	19p-Amp	0.0555	1
CIC	Amp_3q26.33	0.0555	1
CIC	Amp_Xp11.22	0.0555	1
ATRX	CUL4B	0.0564	1
19p-Amp	19q-Del	0.0565	1
19q-Del	Amp_3q26.33	0.0565	1
19q-Del	Amp_Xp11.22	0.0565	1
BRAF	Del_19q13.42	0.0566	1
ANKRD36	Del_1p36.32	0.0573	1
12q-Del	Amp_7q31.2	0.0573	1
Amp_2p24.3	Del_1p36.32	0.0573	1
NIPBL	Del_9p21.3	0.0574	1
NOTCH1	Amp_12p13.32	0.0583	1
Del_1p32.3	Del_8q24.3	0.0584	1
ANKRD36	Del_1p32.3	0.0585	1
Amp_2p24.3	Del_1p32.3	0.0585	1
7q-Amp	Del_19q13.41	0.0592	1
ATRX	7p-Amp	0.0601	1
PTEN	Amp_8q24.13	0.0604	1
ANKRD36	19q-Del	0.061	1
19q-Del	Amp_2p24.3	0.061	1
19p-Amp	Del_19q13.41	0.0623	1
NF1	Del_11p15.5	0.0625	1
CIC	Amp_4q12	0.0629	1
Del_6p25.3	Del_19q13.42	0.063	1
ATRX	NOTCH1	0.0631	1
IDH2	Del_11p15.5	0.0648	1
BRAF	Del_19q13.41	0.0649	1
TP53	Amp_19p13.3	0.0657	1
Amp_19p13.2	Del_19q13.41	0.0657	1
SRPX	TP53	0.0689	1
Amp_7q32.3	Del_12q12	0.0697	1
TP53	9q-Del	0.0699	1
EGFR	Amp_10p15.3	0.0703	1
CREBZF	TP53	0.0706	1
RBPJ	TP53	0.0706	1
CIC	Amp_13q34	0.0709	1
CIC	Del_7p22.3	0.0709	1
8q-Amp	Del_6q24.3	0.0709	1
Del_1p36.32	Del_6p25.3	0.0712	1
ARID1A	9p-Del	0.0713	1
ATRX	Del_Xq21.1	0.0716	1
7q-Amp	Del_14q24.3	0.072	1
19p-Amp	1p-Del	0.0723	1
ANKRD36	1p-Del	0.0732	1
IRS4	1p-Del	0.0732	1
1p-Del	Amp_2p24.3	0.0732	1
DNMT3A	Del_9p21.3	0.0738	1
7q-Amp	Del_1p36.32	0.0738	1
Del_1p32.3	Del_6p25.3	0.0739	1
ATRX	22q-Del	0.074	1
ARID2	IDH1	0.0744	1
Del_3q13.31	Del_19q13.42	0.0751	1
18p-Del	Del_10q26.3	0.0752	1
FUBP1	10p-Amp	0.0757	1
FUBP1	22q-Del	0.0757	1
PIK3R1	Amp_8q24.13	0.0768	1
Amp_4q12	Del_1p32.3	0.0773	1
ZBTB20	10q-Del	0.0787	1
10q-Del	4p-Del	0.0787	1
NIPBL	Del_13q14.2	0.0822	1
6q-Del	Amp_10p15.3	0.0823	1
Amp_7q31.2	Del_19q13.42	0.0827	1
FUBP1	8q-Amp	0.0838	1
8q-Amp	Del_6q22.31	0.0838	1
FUBP1	Del_9p23	0.0841	1
22q-Del	Del_1p36.32	0.0844	1
Del_6p25.3	Del_19q13.41	0.0844	1
CIC	PTEN	0.0854	1
CIC	Del_3p21.31	0.0854	1
10p-Del	Amp_10p15.3	0.0857	1
MYT1	Del_1p36.32	0.0865	1
TRERF1	Del_1p36.32	0.0865	1
Xq-Del	Del_1p36.32	0.0865	1
MYT1	Del_1p32.3	0.088	1
TRERF1	Del_1p32.3	0.088	1
Xq-Del	Del_1p32.3	0.088	1
NOTCH1	Amp_7p11.2	0.0883	1
IDH2	10q-Del	0.089	1
1p-Del	Del_13q14.2	0.0894	1
8q-Amp	Del_14q24.3	0.0896	1
ZBTB20	10p-Del	0.0907	1
10p-Del	4p-Del	0.0907	1
MYT1	19q-Del	0.0912	1
TRERF1	19q-Del	0.0912	1
Amp_7q32.3	Del_19q13.41	0.0922	1
Amp_13q34	Del_19q13.41	0.0925	1
FUBP1	Amp_12q14.1	0.0928	1
FUBP1	Del_5p15.33	0.0928	1
Amp_7q31.2	Del_5q34	0.0929	1
10p-Del	Del_11p15.1	0.0933	1
Del_3q13.31	Del_19q13.41	0.0935	1
7q-Amp	12q-Del	0.0947	1
7q-Amp	Del_3q13.31	0.0947	1
12q-Del	Amp_7p11.2	0.0947	1
Amp_7p11.2	Del_3q13.31	0.0947	1
EGFR	Amp_12p13.32	0.0954	1
Del_12q12	Del_19q13.42	0.0959	1
ATRX	Amp_19p13.3	0.096	1
SLC6A3	Del_9p21.3	0.096	1
ZMIZ1	Del_9p21.3	0.096	1
NUDT11	Del_10q26.3	0.0983	1
7p-Amp	Del_11p15.5	0.0989	1
9p-Del	Del_19q13.42	0.0989	1
PIK3CA	8q-Amp	0.099	1
Amp_7q31.2	Del_12q12	0.1	1
ARID1A	10q-Del	0.101	1
NOTCH1	22q-Del	0.101	1
10q-Del	Del_4q34.3	0.101	1
Amp_19p13.2	Del_1p32.3	0.101	1
IDH2	10p-Del	0.102	1
SMARCA4	Del_10q26.3	0.102	1
FUBP1	Del_6p25.3	0.103	1
STK19	Del_1p32.3	0.104	1
Amp_7p11.2	Amp_12p13.32	0.106	1
Del_5p15.33	Del_19q13.42	0.106	1
MYT1	1p-Del	0.107	1
NF1	Amp_8q24.13	0.107	1
TRERF1	1p-Del	0.107	1
19q-Del	Amp_19p13.2	0.107	1
1p-Del	Xq-Del	0.107	1
Del_11p15.5	Del_18q23	0.107	1
11p-Del	Amp_11q24.1	0.108	1
STK19	19q-Del	0.109	1
TCF12	Del_9p21.3	0.109	1
ARID1A	Amp_8q24.13	0.11	1
NOTCH1	8q-Amp	0.11	1
6q-Del	Amp_12p13.32	0.11	1
Del_12q12	Del_18q23	0.11	1
Amp_7p11.2	Del_11p15.1	0.111	1
ATRX	15q-Del	0.112	1
TP53	4q-Del	0.112	1
ZBTB20	Del_9p23	0.112	1
7q-Amp	Del_Xq21.1	0.112	1
Amp_7p11.2	Del_Xq21.1	0.112	1
TP53	4p-Del	0.113	1
ARID1A	10p-Del	0.114	1
FAM47C	10q-Del	0.114	1
CIC	Xp-Del	0.115	1
IRS4	Del_19q13.42	0.115	1
PDGFRA	Del_19q13.42	0.115	1
PTPN11	Del_19q13.42	0.115	1
SETD2	Del_19q13.42	0.115	1
STK19	Del_19q13.42	0.115	1
Amp_1q22	Del_19q13.42	0.115	1
10q-Del	Del_2q37.3	0.116	1
IDH1	TNRC18	0.118	1
NOTCH1	Del_9p21.3	0.118	1
PIK3CA	14q-Del	0.119	1
PIK3CA	Del_6p25.3	0.12	1
NOTCH1	Amp_12q14.1	0.121	1
NOTCH1	Del_5p15.33	0.121	1
RB1	TP53	0.121	1
FUBP1	9p-Del	0.122	1
IDH2	Del_6q24.3	0.122	1
8q-Amp	14q-Del	0.123	1
14q-Del	Amp_19p13.3	0.123	1
FAM47C	Amp_8q24.13	0.124	1
NIPBL	Amp_8q24.13	0.124	1
Amp_8q24.13	Amp_19p13.2	0.124	1
Del_9p23	Del_19q13.41	0.125	1
FUBP1	4p-Del	0.126	1
SMARCA4	Del_19q13.42	0.126	1
ZBTB20	13q-Del	0.126	1
Del_2q37.3	Del_19q13.41	0.126	1
10q-Del	Del_11p15.5	0.127	1
11p-Del	18q-Del	0.127	1
10p-Del	Del_4q34.3	0.128	1
Del_12q12	Del_19q13.41	0.128	1
EGFR	Amp_11q24.1	0.129	1
FAM47C	10p-Del	0.129	1
IDH2	Del_9p21.3	0.129	1
BRAF	Del_1p36.32	0.13	1
Amp_1q32.1	Del_1p32.3	0.13	1
BRAF	Del_1p32.3	0.132	1
PTEN	Del_1p36.32	0.132	1
SMARCA4	Del_13q14.2	0.132	1
STK19	1p-Del	0.132	1
IDH2	Del_11p15.1	0.133	1
IRS4	Del_19q13.41	0.133	1
PTPN11	Del_19q13.41	0.133	1
Amp_7p11.2	Amp_Xp11.22	0.133	1
CIC	NF1	0.134	1
PDGFRA	Del_19q13.41	0.135	1
PRX	Del_19q13.41	0.135	1
SETD2	Del_19q13.41	0.135	1
STK19	Del_19q13.41	0.135	1
Xp-Del	Amp_7q32.3	0.135	1
Amp_1q22	Del_19q13.41	0.135	1
Amp_7q31.2	Del_11p15.5	0.135	1
BRAF	19q-Del	0.136	1
EGFR	Del_11p15.1	0.136	1
IDH1	Del_6q22.31	0.136	1
ATRX	13q-Del	0.137	1
11p-Del	Amp_7p11.2	0.137	1
Del_5p15.33	Del_19q13.41	0.137	1
Amp_8q24.13	Del_14q24.3	0.138	1
EGFR	Del_12q12	0.139	1
FUBP1	Del_3q29	0.139	1
FUBP1	Del_5q34	0.139	1
IDH2	Del_6q22.31	0.139	1
1p-Del	Amp_19p13.2	0.139	1
Amp_1q32.1	Amp_8q24.13	0.139	1
Amp_7q31.2	Del_14q24.3	0.139	1
ATRX	Del_7p22.3	0.141	1
TNRC18	Del_1p36.32	0.141	1
ZBTB20	Amp_7p11.2	0.141	1
19p-Amp	Del_14q24.3	0.141	1
10p-Del	Del_2q37.3	0.141	1
18q-Del	Amp_10p15.3	0.142	1
NOTCH1	Amp_8q24.13	0.143	1
ATRX	NRAS	0.144	1
TNRC18	Del_1p32.3	0.144	1
NF1	Amp_11q24.1	0.146	1
11q-Amp	10q-Del	0.146	1
19q-Del	Del_3p21.31	0.146	1
4q-Del	6q-Del	0.146	1
CIC	GAGE2A	0.147	1
ARID1A	Del_11p15.1	0.148	1
19q-Del	Xp-Del	0.149	1
ARID1A	Del_9p23	0.15	1
EGFR	10p-Amp	0.15	1
FAM47C	Del_6q24.3	0.151	1
SLC6A3	Del_10q26.3	0.151	1
ZBTB20	Del_2q37.3	0.151	1
ZMIZ1	Del_10q26.3	0.151	1
Amp_19p13.2	Del_6q24.3	0.151	1
ARID1A	Del_9p21.3	0.154	1
FUBP1	Amp_4q12	0.154	1
BRAF	1p-Del	0.155	1
Amp_3q26.33	Del_19q13.42	0.155	1
Amp_17q25.1	Del_19q13.42	0.155	1
Del_5q34	Del_19q13.42	0.155	1
IDH1	PIK3CA	0.156	1
10q-Del	18p-Del	0.156	1
10q-Del	Amp_11q24.1	0.156	1
PIK3CA	9p-Del	0.159	1
PIK3CA	Del_3q29	0.159	1
NF1	Del_11p15.1	0.16	1
19q-Del	Amp_17q25.1	0.16	1
Xp-Del	Amp_7q31.2	0.161	1
Amp_7p11.2	Del_5q34	0.161	1
DNMT3A	Del_9p23	0.162	1
EGFR	8q-Amp	0.162	1
SETD2	Del_9p23	0.162	1
11q-Amp	10p-Del	0.162	1
SMARCA4	Del_19q13.41	0.163	1
DNMT3A	IDH1	0.164	1
IDH1	PDGFRA	0.164	1
ARID2	Del_14q24.3	0.166	1
IDH2	Del_2q37.3	0.166	1
CIC	Amp_17q25.1	0.167	1
SMARCA4	6q-Del	0.168	1
10p-Amp	6q-Del	0.168	1
14q-Del	Amp_8q24.13	0.168	1
4q-Del	Amp_7p11.2	0.168	1
TNRC18	Del_19q13.42	0.169	1
7p-Amp	12q-Del	0.169	1
7p-Amp	Del_3q13.31	0.169	1
FUBP1	Amp_19p13.2	0.17	1
NIPBL	13q-Del	0.17	1
13q-Del	Amp_19p13.2	0.17	1
Amp_19p13.2	Del_6q22.31	0.17	1
PTEN	Del_11p15.5	0.171	1
TP53	Del_10q26.3	0.172	1
10q-Del	Del_12q12	0.172	1
18p-Del	Amp_8q24.13	0.172	1
NIPBL	Del_9p23	0.173	1
NOTCH1	Amp_17q25.1	0.173	1
NOTCH1	Del_3q29	0.173	1
NOTCH1	Del_5q34	0.173	1
PIK3CA	Del_9p21.3	0.173	1
PIK3R1	11p-Del	0.175	1
15q-Del	Amp_8q24.13	0.176	1
TNRC18	1p-Del	0.177	1
18q-Del	Amp_12p13.32	0.177	1
NF1	8q-Amp	0.18	1
NF1	Amp_19p13.3	0.18	1
8q-Amp	6q-Del	0.18	1
10p-Del	18p-Del	0.18	1
10p-Del	Amp_11q24.1	0.18	1
ATRX	CREBZF	0.181	1
ATRX	RBPJ	0.181	1
NOTCH1	Amp_10p15.3	0.181	1
RB1	Del_19q13.42	0.181	1
ZBTB20	Del_22q13.31	0.182	1
Amp_3q26.33	Del_1p32.3	0.182	1
EGFR	Del_2q37.3	0.183	1
FAM47C	Del_9p21.3	0.183	1
Amp_3q26.33	Del_19q13.41	0.183	1
Amp_11q24.1	Del_14q24.3	0.183	1
Amp_8q24.13	Del_6q24.3	0.184	1
7q-Amp	Del_13q14.2	0.185	1
Amp_10p15.3	Del_14q24.3	0.185	1
10q-Del	12q-Del	0.186	1
ANKRD36	CIC	0.187	1
CIC	Amp_2p24.3	0.187	1
CIC	Del_1q43	0.187	1
11q-Amp	Del_6q24.3	0.187	1
FUBP1	Amp_1q32.1	0.188	1
NOTCH1	Del_13q14.2	0.188	1
SMARCA4	10q-Del	0.188	1
7q-Amp	Del_12q12	0.188	1
10q-Del	18q-Del	0.188	1
Amp_7p11.2	Del_12q12	0.188	1
IDH2	14q-Del	0.189	1
IDH1	RET	0.19	1
NF1	19q-Del	0.19	1
7p-Amp	Del_13q14.2	0.19	1
11p-Del	Del_18q23	0.19	1
6q-Del	Del_11p15.5	0.19	1
19p-Amp	Del_13q14.2	0.191	1
TCF12	Del_10q26.3	0.192	1
7p-Amp	Del_Xq21.1	0.192	1
4q-Del	Del_10q26.3	0.192	1
Amp_17q25.1	Del_19q13.41	0.192	1
Del_5q34	Del_19q13.41	0.192	1
CUL4B	TP53	0.193	1
NF1	Amp_12q14.1	0.193	1
NF1	Del_3p21.31	0.193	1
PIK3R1	Amp_10p15.3	0.193	1
6q-Del	Amp_12q14.1	0.193	1
EGFR	NOTCH1	0.194	1
NOTCH1	Del_6q24.3	0.194	1
TNRC18	Del_19q13.41	0.194	1
TP53	22q-Del	0.194	1
ATRX	SETD2	0.195	1
SLC6A3	Del_9p23	0.195	1
ZMIZ1	Del_9p23	0.195	1
19p-Amp	Del_11p15.5	0.196	1
ATRX	PIK3R1	0.197	1
IDH2	Del_22q13.31	0.197	1
10p-Del	Del_12q12	0.197	1
Amp_17q25.1	Del_18q23	0.197	1
Del_3q29	Del_18q23	0.197	1
Del_5q34	Del_18q23	0.197	1
NOTCH1	Del_11p15.5	0.198	1
FAM47C	Del_2q37.3	0.199	1
NIPBL	Del_2q37.3	0.199	1
RB1	Del_19q13.41	0.202	1
PTEN	Amp_12p13.32	0.203	1
BRAF	TP53	0.204	1
10p-Del	12q-Del	0.204	1
IDH2	11p-Del	0.206	1
TP53	Del_18q23	0.206	1
8q-Amp	10q-Del	0.207	1
10p-Del	11p-Del	0.207	1
Amp_7q31.2	Del_19q13.41	0.207	1
Amp_7q32.3	Del_5q34	0.207	1
FUBP1	Del_8q24.3	0.208	1
TCF12	Amp_7q31.2	0.208	1
ZBTB20	Amp_10p15.3	0.208	1
11q-Amp	13q-Del	0.208	1
11q-Amp	Del_6q22.31	0.208	1
18p-Del	Del_12q12	0.209	1
4p-Del	Del_10q26.3	0.209	1
Amp_11q24.1	Del_12q12	0.209	1
PIK3CA	Amp_1q32.1	0.21	1
10q-Del	Del_Xq21.1	0.21	1
CREBZF	Amp_7q32.3	0.211	1
NF1	Del_2q37.3	0.211	1
PPL	Del_9p21.3	0.211	1
RBBP6	Del_9p21.3	0.211	1
TRERF1	Del_9p21.3	0.211	1
Amp_12q14.1	Del_9p23	0.212	1
SMARCA4	10p-Del	0.215	1
10p-Del	18q-Del	0.215	1
Amp_19p13.3	Del_4q34.3	0.216	1
ARID2	Del_19q13.42	0.217	1
IDH1	SRPX	0.217	1
19q-Del	Del_13q14.2	0.217	1
4q-Del	Del_6q24.3	0.217	1
Amp_13q34	Del_19q13.42	0.217	1
Amp_1q32.1	Del_2q37.3	0.218	1
7p-Amp	Amp_Xp11.22	0.219	1
SMARCA4	18p-Del	0.222	1
7q-Amp	Xp-Del	0.222	1
22q-Del	Amp_11q24.1	0.222	1
Amp_19p13.2	Del_14q24.3	0.222	1
ARID1A	11p-Del	0.223	1
FAM47C	14q-Del	0.224	1
NIPBL	14q-Del	0.224	1
ARID2	Del_11p15.5	0.225	1
IDH2	Amp_10p15.3	0.225	1
Amp_8q24.13	Amp_19p13.3	0.225	1
NOTCH1	Amp_1q32.1	0.226	1
10p-Amp	Del_14q24.3	0.226	1
IDH1	9q-Del	0.227	1
14q-Del	Amp_7q31.2	0.227	1
10p-Del	Del_Xq21.1	0.229	1
9p-Del	Del_19q13.41	0.229	1
CREBZF	Del_10q26.3	0.23	1
FUBP1	15q-Del	0.23	1
IRS4	Del_10q26.3	0.23	1
ARID2	Del_1p36.32	0.231	1
NOTCH1	Del_6q22.31	0.231	1
SLC6A3	Del_14q24.3	0.231	1
14q-Del	Del_11p15.5	0.232	1
FAM47C	Del_18q23	0.233	1
FAM47C	Del_22q13.31	0.233	1
NIPBL	Del_22q13.31	0.233	1
PIK3R1	Amp_12p13.32	0.233	1
IDH1	Amp_4q12	0.234	1
SMARCA4	Del_12q12	0.234	1
ZBTB20	Del_11p15.5	0.234	1
8q-Amp	10p-Del	0.234	1
18q-Del	Del_12q12	0.234	1
ATRX	TMEM216	0.235	1
EGFR	IDH2	0.235	1
EGFR	Del_3q29	0.235	1
EGFR	Del_4q34.3	0.235	1
8q-Amp	18p-Del	0.235	1
ARID2	Del_1p32.3	0.236	1
10q-Del	Amp_Xp11.22	0.237	1
Amp_7q32.3	Del_11p15.5	0.237	1
CIC	Xq-Del	0.238	1
NF1	4p-Del	0.238	1
Del_2q37.3	Del_19q13.42	0.239	1
CREBZF	Amp_7q31.2	0.242	1
PIK3CA	Del_10q26.3	0.242	1
Amp_7q31.2	Del_3q13.31	0.242	1
EGFR	11p-Del	0.243	1
7q-Amp	13q-Del	0.243	1
7q-Amp	Del_6q22.31	0.243	1
ARID2	19q-Del	0.244	1
NOTCH1	7p-Amp	0.244	1
18q-Del	Del_10q26.3	0.244	1
Amp_8q24.13	Amp_12q14.1	0.245	1
NOTCH1	Del_8q24.3	0.247	1
FUBP1	Amp_11q24.1	0.248	1
PTPN11	TP53	0.248	1
SMARCA4	22q-Del	0.248	1
10p-Amp	18q-Del	0.248	1
7p-Amp	Amp_12p13.32	0.248	1
13q-Del	Amp_11q24.1	0.248	1
4q-Del	Del_6q22.31	0.248	1
ARID2	Del_19q13.41	0.249	1
7q-Amp	Amp_12p13.32	0.249	1
19p-Amp	Amp_8q24.13	0.25	1
Amp_7q31.2	Del_22q13.31	0.25	1
ATRX	FAM47C	0.251	1
IDH2	9p-Del	0.251	1
IDH2	Del_13q14.2	0.251	1
DNMT3A	9p-Del	0.252	1
DNMT3A	Del_13q14.2	0.252	1
SETD2	9p-Del	0.252	1
Amp_1q32.1	Del_18q23	0.253	1
Amp_1q32.1	Del_22q13.31	0.253	1
FUBP1	12q-Del	0.254	1
FUBP1	Del_3q13.31	0.254	1
SMARCA4	Del_6q24.3	0.254	1
NF1	1p-Del	0.255	1
11q-Amp	Del_9p21.3	0.255	1
IDH2	6q-Del	0.256	1
NF1	Del_3q29	0.256	1
NF1	Del_5q34	0.256	1
ATRX	9q-Del	0.257	1
10p-Del	Amp_Xp11.22	0.257	1
STK19	Del_11p15.5	0.258	1
Del_1p36.32	Del_3p21.31	0.258	1
ATRX	RB1	0.26	1
ATRX	RBBP6	0.26	1
ATRX	Xq-Del	0.26	1
FAM47C	Amp_10p15.3	0.262	1
IRS4	Del_1p36.32	0.262	1
NIPBL	Amp_10p15.3	0.262	1
PTPN11	Del_1p36.32	0.262	1
TCF12	Del_9p23	0.262	1
8q-Amp	18q-Del	0.262	1
Amp_10p15.3	Amp_19p13.2	0.262	1
PTEN	Del_12q12	0.263	1
14q-Del	Amp_12p13.32	0.263	1
Xq-Del	Amp_7q32.3	0.264	1
IRS4	Del_1p32.3	0.265	1
IDH2	Amp_12p13.32	0.267	1
NUDT11	10q-Del	0.268	1
ZBTB20	7p-Amp	0.268	1
10q-Del	Del_7p22.3	0.268	1
IRS4	19q-Del	0.273	1
NF1	Del_4q34.3	0.273	1
PTPN11	19q-Del	0.273	1
6q-Del	Del_4q34.3	0.273	1
Amp_7q31.2	Amp_12p13.32	0.273	1
Del_1p36.32	Del_13q14.2	0.273	1
NF1	11p-Del	0.274	1
NF1	Amp_4q12	0.274	1
11p-Del	6q-Del	0.274	1
6q-Del	Amp_4q12	0.274	1
Amp_19p13.3	Del_6q24.3	0.274	1
FAM47C	TP53	0.275	1
IDH1	Del_8q24.3	0.275	1
11q-Amp	Del_22q13.31	0.275	1
11p-Del	Amp_7q31.2	0.275	1
SMARCA4	Del_5p15.33	0.276	1
SMARCA4	Del_11p15.1	0.276	1
8q-Amp	Amp_19p13.3	0.276	1
18q-Del	Del_5p15.33	0.276	1
18q-Del	Del_11p15.1	0.276	1
ZNF512B	Del_19q13.42	0.278	1
FUBP1	Del_Xq21.1	0.28	1
PIK3R1	4q-Del	0.281	1
PIK3R1	Del_4q34.3	0.281	1
Amp_1q32.1	Amp_10p15.3	0.282	1
Amp_11q24.1	Del_13q14.2	0.282	1
11q-Amp	Del_14q24.3	0.283	1
MYT1	Del_10q26.3	0.284	1
SCN4A	Del_10q26.3	0.284	1
TRERF1	Del_10q26.3	0.284	1
11q-Amp	11p-Del	0.284	1
ARID2	1p-Del	0.285	1
6q-Del	Amp_8q24.13	0.285	1
Del_1p32.3	Del_13q14.2	0.285	1
ARID1A	Del_11p15.5	0.286	1
19p-Amp	Del_6q24.3	0.286	1
FUBP1	SMARCA4	0.287	1
SMARCA4	13q-Del	0.287	1
SMARCA4	Del_6q22.31	0.287	1
NUDT11	10p-Del	0.288	1
10p-Del	Del_7p22.3	0.288	1
NOTCH1	Del_2q37.3	0.289	1
SLC6A3	9p-Del	0.29	1
TNRC18	Del_13q14.2	0.29	1
ZMIZ1	9p-Del	0.29	1
PTEN	8q-Amp	0.291	1
18p-Del	Del_11p15.5	0.292	1
18p-Del	Del_9p23	0.293	1
FAM47C	6q-Del	0.294	1
NF1	Amp_19p13.2	0.294	1
NIPBL	6q-Del	0.294	1
7p-Amp	Del_5q34	0.294	1
6q-Del	Amp_19p13.2	0.294	1
NOTCH1	12q-Del	0.295	1
NOTCH1	Del_3q13.31	0.295	1
SMOC1	Del_1p36.32	0.295	1
18p-Del	Del_2q37.3	0.295	1
4q-Del	Del_2q37.3	0.295	1
PLXNA3	Del_11p15.5	0.296	1
PRX	Del_19q13.42	0.296	1
TNRC18	Del_11p15.5	0.296	1
Amp_12q14.1	Del_6q24.3	0.296	1
PDGFRA	Del_1p36.32	0.297	1
PRX	Del_1p36.32	0.297	1
SETD2	Del_1p36.32	0.297	1
STK19	Del_1p36.32	0.297	1
Xq-Del	Amp_7q31.2	0.297	1
Amp_1q22	Del_1p36.32	0.297	1
Amp_19p13.3	Del_11p15.1	0.297	1
SMOC1	Del_1p32.3	0.298	1
7p-Amp	Del_14q24.3	0.298	1
PDGFRA	Del_1p32.3	0.301	1
PRX	Del_1p32.3	0.301	1
SETD2	Del_1p32.3	0.301	1
19p-Amp	Del_11p15.1	0.301	1
DNMT3A	10q-Del	0.302	1
CIC	NEU2	0.303	1
NF1	Amp_10p15.3	0.303	1
SMOC1	19q-Del	0.303	1
TCF12	7q-Amp	0.303	1
TCF12	Amp_7p11.2	0.303	1
ZNF512B	Del_19q13.41	0.303	1
FAM47C	Amp_12p13.32	0.305	1
NIPBL	Amp_12p13.32	0.305	1
PIK3CA	Del_Xq21.1	0.305	1
Amp_12p13.32	Amp_19p13.2	0.305	1
FAM47C	9p-Del	0.307	1
FAM47C	Del_13q14.2	0.307	1
NIPBL	9p-Del	0.307	1
PTPN11	1p-Del	0.307	1
Amp_19p13.2	Del_13q14.2	0.307	1
PIK3R1	10p-Amp	0.308	1
7p-Amp	Del_11p15.1	0.308	1
11p-Del	15q-Del	0.308	1
13q-Del	Amp_19p13.3	0.308	1
Amp_19p13.3	Del_6q22.31	0.308	1
CUL4B	Del_4q34.3	0.309	1
FUBP1	19p-Amp	0.309	1
FUBP1	Amp_3q26.33	0.309	1
FUBP1	Amp_Xp11.22	0.309	1
NIPBL	Del_10q26.3	0.309	1
19p-Amp	13q-Del	0.309	1
19p-Amp	Del_6q22.31	0.309	1
13q-Del	Amp_Xp11.22	0.309	1
AGBL1	IDH1	0.311	1
CREBZF	7q-Amp	0.311	1
CREBZF	Amp_7p11.2	0.311	1
HTRA2	IDH1	0.311	1
IDH1	NEU2	0.311	1
IDH1	Del_6q24.3	0.311	1
PDGFRA	19q-Del	0.311	1
PRX	19q-Del	0.311	1
SETD2	19q-Del	0.311	1
7q-Amp	Del_1q43	0.311	1
19q-Del	Amp_1q22	0.311	1
ZBTB20	Del_12q12	0.312	1
14q-Del	Del_3q13.31	0.314	1
EGFR	11q-Amp	0.315	1
EGFR	Del_8q24.3	0.315	1
SMARCA4	Del_1p36.32	0.315	1
CUL4B	Amp_8q24.13	0.316	1
NIPBL	Del_11p15.5	0.316	1
PDGFRA	Amp_8q24.13	0.316	1
SETD2	Amp_8q24.13	0.316	1
18p-Del	Amp_17q25.1	0.316	1
18p-Del	Del_3q29	0.316	1
18p-Del	Del_5q34	0.316	1
Amp_19p13.2	Del_11p15.5	0.316	1
MYST4	Del_6q24.3	0.318	1
NUDT11	Del_6q24.3	0.318	1
TCF12	Del_14q24.3	0.318	1
PTEN	Del_11p15.1	0.319	1
CIC	Del_14q24.3	0.32	1
PTPN11	Del_14q24.3	0.321	1
RBPJ	Del_14q24.3	0.321	1
7p-Amp	Xp-Del	0.321	1
Amp_7q31.2	Del_11p15.1	0.321	1
Amp_7q32.3	Del_14q24.3	0.321	1
7p-Amp	11p-Del	0.322	1
CIC	SMARCA4	0.323	1
DNMT3A	10p-Del	0.323	1
PIK3CA	10p-Amp	0.323	1
PIK3R1	8q-Amp	0.323	1
SMARCA4	Del_1p32.3	0.323	1
TP53	7p-Amp	0.323	1
12q-Del	Del_18q23	0.323	1
IDH1	PLXNA3	0.325	1
IDH1	Xp-Del	0.325	1
ZBTB20	10p-Amp	0.326	1
ZBTB20	22q-Del	0.326	1
7q-Amp	Del_11p15.5	0.326	1
7p-Amp	Del_6q22.31	0.327	1
PIK3CA	Del_11p15.5	0.328	1
SMOC1	1p-Del	0.328	1
15q-Del	Amp_10p15.3	0.328	1
Amp_7p11.2	Del_6q24.3	0.329	1
Amp_7q31.2	Del_13q14.2	0.329	1
IDH2	Del_12q12	0.33	1
ROBO3	Amp_7q32.3	0.33	1
Amp_7p11.2	Del_2q37.3	0.33	1
FUBP1	PTEN	0.331	1
FUBP1	Del_3p21.31	0.331	1
Amp_7q32.3	Del_13q14.2	0.331	1
IDH2	Del_9p23	0.332	1
ARID2	Del_11p15.1	0.333	1
CIB1	TP53	0.333	1
NRAS	TP53	0.333	1
PIK3CA	Del_14q24.3	0.333	1
PIK3CA	Amp_Xp11.22	0.335	1
PIK3R1	Amp_7q32.3	0.335	1
Amp_4q12	Amp_11q24.1	0.335	1
14q-Del	Amp_11q24.1	0.336	1
18q-Del	Del_2q37.3	0.336	1
ATRX	MYST4	0.337	1
NF1	11q-Amp	0.337	1
11q-Amp	6q-Del	0.337	1
7p-Amp	4q-Del	0.337	1
PIK3R1	Amp_12q14.1	0.338	1
PIK3R1	Del_5p15.33	0.338	1
RBBP6	Del_9p23	0.338	1
CIC	PRX	0.339	1
CIC	SETD2	0.339	1
CIC	STK19	0.339	1
CIC	Amp_1q22	0.339	1
EGFR	TCF12	0.339	1
SMARCA4	19q-Del	0.339	1
Del_2q37.3	Del_18q23	0.34	1
FUBP1	Amp_13q34	0.341	1
MYST4	Del_6q22.31	0.341	1
NUDT11	Del_6q22.31	0.341	1
SLC6A3	10q-Del	0.341	1
ZMIZ1	10q-Del	0.341	1
14q-Del	Del_Xq21.1	0.341	1
SMARCA4	Del_11p15.5	0.343	1
19p-Amp	Del_2q37.3	0.343	1
10q-Del	Del_18q23	0.343	1
IDH2	SMARCA4	0.344	1
IDH2	10p-Amp	0.344	1
IDH2	22q-Del	0.344	1
RET	Del_19q13.42	0.344	1
11p-Del	Amp_7q32.3	0.344	1
18q-Del	Amp_17q25.1	0.344	1
18q-Del	Del_3q29	0.344	1
18q-Del	Del_5q34	0.344	1
22q-Del	Amp_17q25.1	0.344	1
Amp_2p24.3	Del_19q13.42	0.344	1
13q-Del	Amp_7q31.2	0.347	1
Amp_1q32.1	Del_11p15.5	0.347	1
Amp_7q31.2	Del_6q22.31	0.347	1
CIC	Del_13q14.2	0.348	1
SLC6A3	Del_4q34.3	0.348	1
ZMIZ1	Del_4q34.3	0.348	1
Del_3p21.31	Del_19q13.42	0.348	1
ARID1A	Del_12q12	0.349	1
11q-Amp	Amp_12p13.32	0.349	1
NOTCH1	10p-Amp	0.35	1
NOTCH1	18q-Del	0.35	1
Amp_11q24.1	Del_22q13.31	0.35	1
DDX5	Del_10q26.3	0.351	1
NEU2	Del_10q26.3	0.351	1
ROBO3	Del_10q26.3	0.351	1
ZNF512B	Del_10q26.3	0.351	1
NOTCH1	19p-Amp	0.352	1
NOTCH1	Amp_3q26.33	0.352	1
EGFR	FUBP1	0.354	1
RB1	Del_1p32.3	0.354	1
10p-Del	Del_5q34	0.354	1
18q-Del	Del_9p23	0.354	1
CUL4B	1p-Del	0.355	1
FAM47C	18p-Del	0.355	1
FAM47C	Amp_11q24.1	0.355	1
MYST4	Del_10q26.3	0.355	1
NIPBL	Amp_11q24.1	0.355	1
PDGFRA	1p-Del	0.355	1
PLXNA3	Amp_8q24.13	0.355	1
PRX	1p-Del	0.355	1
SETD2	1p-Del	0.355	1
SLC6A3	Amp_8q24.13	0.355	1
7q-Amp	4q-Del	0.355	1
10q-Del	Del_11p15.1	0.355	1
1p-Del	Amp_1q22	0.355	1
4q-Del	Amp_19p13.2	0.355	1
Del_7p22.3	Del_10q26.3	0.355	1
ZBTB20	Del_3p21.31	0.356	1
ZBTB20	Del_5p15.33	0.356	1
4p-Del	Amp_12q14.1	0.356	1
NOTCH1	9p-Del	0.357	1
NOTCH1	Del_18q23	0.357	1
12q-Del	Del_14q24.3	0.357	1
Amp_19p13.3	Del_2q37.3	0.358	1
CIC	14q-Del	0.359	1
Amp_17q25.1	Amp_19p13.3	0.359	1
CIC	Amp_19p13.3	0.36	1
8q-Amp	9p-Del	0.36	1
NF1	TCF12	0.361	1
NF1	15q-Del	0.361	1
NF1	9q-Del	0.361	1
Amp_7q32.3	Del_11p15.1	0.361	1
RB1	19q-Del	0.362	1
SLC6A3	10p-Del	0.362	1
ZMIZ1	10p-Del	0.362	1
19q-Del	Xq-Del	0.362	1
ARID1A	ATRX	0.363	1
ARID1A	22q-Del	0.363	1
SMARCA4	Amp_4q12	0.363	1
TP53	7q-Amp	0.363	1
7p-Amp	Del_12q12	0.363	1
18q-Del	Amp_4q12	0.363	1
ROBO3	Amp_7q31.2	0.364	1
Amp_7q32.3	Amp_12p13.32	0.364	1
EGFR	12q-Del	0.365	1
EGFR	Del_3q13.31	0.365	1
11p-Del	18p-Del	0.365	1
AGBL1	ATRX	0.367	1
ATRX	BRAF	0.367	1
7q-Amp	Xq-Del	0.367	1
PIK3CA	Del_5p15.33	0.368	1
NF1	Amp_12p13.32	0.369	1
NIPBL	Del_12q12	0.369	1
RBBP6	TP53	0.369	1
STK19	Del_11p15.1	0.369	1
Amp_19p13.2	Del_12q12	0.369	1
ZBTB20	Del_6q24.3	0.37	1
4p-Del	Del_6q24.3	0.37	1
4p-Del	Del_14q24.3	0.37	1
ATRX	7q-Amp	0.371	1
19p-Amp	14q-Del	0.371	1
Amp_19p13.3	Del_11p15.5	0.371	1
4p-Del	Del_6p25.3	0.372	1
TCF12	Amp_12p13.32	0.373	1
11q-Amp	Del_13q14.2	0.373	1
15q-Del	Amp_12p13.32	0.373	1
9q-Del	Amp_12p13.32	0.373	1
Amp_11q24.1	Del_1p36.32	0.373	1
Amp_12p13.32	Del_6q24.3	0.373	1
IDH2	PTEN	0.374	1
IDH2	Del_5p15.33	0.374	1
PTEN	Amp_17q25.1	0.374	1
Amp_17q25.1	Del_5p15.33	0.374	1
IDH1	NIPBL	0.375	1
ZBTB20	Amp_7q32.3	0.375	1
NUDT11	Del_2q37.3	0.376	1
1p-Del	Amp_17q25.1	0.376	1
DNMT3A	13q-Del	0.377	1
RET	Del_19q13.41	0.377	1
SETD2	Del_6q22.31	0.377	1
10p-Amp	14q-Del	0.377	1
18p-Del	Amp_1q32.1	0.377	1
4q-Del	Amp_1q32.1	0.377	1
Amp_1q32.1	Amp_11q24.1	0.377	1
Amp_2p24.3	Del_19q13.41	0.377	1
ARID1A	8q-Amp	0.378	1
EMG1	Del_14q24.3	0.378	1
MYT1	Del_14q24.3	0.378	1
Amp_4q12	Amp_19p13.3	0.378	1
PDGFRA	Amp_7q32.3	0.379	1
6q-Del	Del_11p15.1	0.38	1
Del_6q24.3	Del_11p15.5	0.38	1
ATRX	KRAS	0.381	1
ATRX	11q-Amp	0.381	1
NOTCH1	Del_14q24.3	0.381	1
PIK3CA	Amp_10p15.3	0.381	1
PTEN	Del_2q37.3	0.381	1
19p-Amp	Del_18q23	0.381	1
Amp_3q26.33	Del_18q23	0.381	1
Amp_11q24.1	Del_1p32.3	0.381	1
Amp_12q14.1	Del_2q37.3	0.381	1
Amp_Xp11.22	Del_18q23	0.381	1
NIPBL	10q-Del	0.382	1
ANKRD36	Del_13q14.2	0.383	1
IRS4	Del_13q14.2	0.383	1
RET	9p-Del	0.383	1
Del_1q43	Del_13q14.2	0.383	1
FAM47C	10p-Amp	0.384	1
FAM47C	18q-Del	0.384	1
FAM47C	22q-Del	0.384	1
IDH1	Del_3q13.31	0.384	1
NIPBL	10p-Amp	0.384	1
NIPBL	22q-Del	0.384	1
10p-Amp	Amp_19p13.2	0.384	1
CIC	KRT3	0.385	1
CIC	NRAS	0.385	1
NOTCH1	Amp_13q34	0.385	1
PIK3CA	Del_11p15.1	0.386	1
NF1	12q-Del	0.387	1
10p-Amp	Amp_7q32.3	0.388	1
10p-Del	Del_18q23	0.388	1
CREBZF	Del_11p15.5	0.389	1
PIK3R1	4p-Del	0.389	1
PTPN11	Del_11p15.5	0.389	1
RBPJ	Del_11p15.5	0.389	1
RET	Del_11p15.5	0.389	1
9p-Del	Amp_12q14.1	0.389	1
IDH2	Del_6p25.3	0.39	1
TNRC18	19q-Del	0.39	1
Amp_7q32.3	Del_6q22.31	0.39	1
19p-Amp	11p-Del	0.391	1
19p-Amp	Del_1p36.32	0.391	1
EGFR	Del_Xq21.1	0.392	1
FAM47C	Del_4q34.3	0.392	1
FUBP1	Del_4q34.3	0.392	1
GAGE2A	Del_4q34.3	0.392	1
NIPBL	Del_4q34.3	0.392	1
SLC6A3	Del_6q24.3	0.392	1
SMARCA4	Del_22q13.31	0.392	1
10p-Amp	Del_18q23	0.392	1
Amp_19p13.2	Del_4q34.3	0.392	1
Del_4q34.3	Del_6q22.31	0.392	1
ARID1A	Amp_12q14.1	0.393	1
GAGE2A	TP53	0.393	1
CUL4B	IDH1	0.394	1
IDH1	Amp_1q22	0.394	1
ZBTB20	Del_11p15.1	0.394	1
1p-Del	Del_14q24.3	0.394	1
SLC6A3	Del_19q13.42	0.395	1
FAM47C	8q-Amp	0.398	1
FAM47C	Amp_19p13.3	0.398	1
NIPBL	8q-Amp	0.398	1
RB1	1p-Del	0.398	1
8q-Amp	Amp_19p13.2	0.398	1
4q-Del	Amp_7q31.2	0.398	1
CIC	PLXNA3	0.399	1
19q-Del	Amp_11q24.1	0.399	1
Del_14q24.3	Del_Xq21.1	0.399	1
Amp_7p11.2	Del_6q22.31	0.4	1
Amp_11q24.1	Del_8q24.3	0.4	1
PIK3CA	Amp_1q22	0.402	1
TCF12	Amp_7q32.3	0.402	1
15q-Del	Amp_7q32.3	0.402	1
ARID2	14q-Del	0.403	1
IDH1	Xq-Del	0.403	1
NUDT11	14q-Del	0.403	1
14q-Del	Del_7p22.3	0.403	1
SMARCA4	Amp_1q32.1	0.405	1
10p-Amp	Amp_1q32.1	0.405	1
7q-Amp	14q-Del	0.405	1
18q-Del	Amp_1q32.1	0.405	1
22q-Del	Amp_1q32.1	0.405	1
ZBTB20	Del_6q22.31	0.406	1
4p-Del	Del_6q22.31	0.406	1
Del_3q29	Del_14q24.3	0.406	1
IDH2	PIK3R1	0.407	1
PIK3R1	Amp_7q31.2	0.407	1
PIK3R1	Amp_17q25.1	0.407	1
PIK3R1	Del_3q29	0.407	1
SMARCA4	11p-Del	0.407	1
Amp_7q32.3	Amp_10p15.3	0.407	1
FAM47C	Del_9p23	0.408	1
PLXNA3	Del_11p15.1	0.408	1
SLC6A3	Del_11p15.1	0.408	1
TNRC18	Del_11p15.1	0.408	1
TCF12	9p-Del	0.409	1
Del_3p21.31	Del_19q13.41	0.409	1
DNMT3A	Del_10q26.3	0.41	1
SETD2	TP53	0.41	1
10q-Del	Amp_10p15.3	0.41	1
11p-Del	14q-Del	0.41	1
Del_18q23	Del_22q13.31	0.41	1
CUL4B	Del_2q37.3	0.411	1
EGFR	4q-Del	0.411	1
PDGFRA	Del_2q37.3	0.411	1
PRX	Del_2q37.3	0.411	1
STK19	Del_2q37.3	0.411	1
19p-Amp	Amp_10p15.3	0.411	1
7q-Amp	6q-Del	0.411	1
6q-Del	Amp_7p11.2	0.411	1
KRT3	Amp_7q32.3	0.412	1
NAP1L2	Amp_7q32.3	0.412	1
NRAS	Amp_7q32.3	0.412	1
ZNF709	Amp_7q32.3	0.412	1
ARID2	Del_18q23	0.413	1
MYST4	Del_22q13.31	0.413	1
NIPBL	10p-Del	0.413	1
NUDT11	Del_18q23	0.413	1
PIK3R1	Del_9p21.3	0.413	1
11q-Amp	Del_12q12	0.413	1
Del_7p22.3	Del_18q23	0.413	1
CREBZF	7p-Amp	0.414	1
FAM47C	Del_3p21.31	0.414	1
NIPBL	Del_3p21.31	0.414	1
NIPBL	Del_5p15.33	0.414	1
SMARCA4	1p-Del	0.414	1
KRT3	Del_19q13.42	0.415	1
NF1	Del_Xq21.1	0.415	1
ZNF709	Del_19q13.42	0.415	1
FUBP1	Xp-Del	0.416	1
SLC6A3	Del_6q22.31	0.416	1
TNRC18	13q-Del	0.416	1
Amp_10p15.3	Del_12q12	0.416	1
Del_13q14.2	Del_19q13.42	0.417	1
15q-Del	Del_11p15.5	0.418	1
Amp_12p13.32	Del_6q22.31	0.418	1
NOTCH1	Amp_1q22	0.42	1
8q-Amp	Amp_1q32.1	0.42	1
NF1	Amp_7q31.2	0.421	1
EGFR	Amp_3q26.33	0.422	1
EGFR	Amp_Xp11.22	0.422	1
ARID2	11p-Del	0.423	1
MYST4	11p-Del	0.423	1
ARID1A	7q-Amp	0.424	1
ARID1A	Amp_7p11.2	0.424	1
TCF12	18p-Del	0.424	1
ZBTB20	Amp_17q25.1	0.424	1
ZBTB20	Del_5q34	0.424	1
9q-Del	Amp_11q24.1	0.424	1
Amp_1q32.1	Del_4q34.3	0.425	1
ATRX	PRX	0.426	1
NOTCH1	Del_11p15.1	0.426	1
PIK3R1	Amp_4q12	0.426	1
Amp_8q24.13	Del_12q12	0.426	1
ARID1A	Del_6q24.3	0.427	1
SMARCA4	Del_8q24.3	0.427	1
10p-Amp	10q-Del	0.427	1
11q-Amp	22q-Del	0.427	1
FAM47C	Del_6p25.3	0.429	1
NIPBL	Del_6p25.3	0.429	1
PDGFRA	Amp_7q31.2	0.429	1
PIK3CA	Amp_7q31.2	0.429	1
Amp_19p13.2	Del_6p25.3	0.429	1
NF1	Del_1p36.32	0.432	1
CIB1	Del_10q26.3	0.433	1
NRAS	Del_10q26.3	0.433	1
SLC6A3	Del_19q13.41	0.433	1
Xp-Del	Del_19q13.41	0.433	1
CREBZF	10q-Del	0.434	1
FUBP1	IDH2	0.434	1
IDH2	13q-Del	0.434	1
IRS4	10q-Del	0.434	1
RBPJ	10q-Del	0.434	1
10q-Del	Amp_2p24.3	0.434	1
Amp_17q25.1	Del_6q22.31	0.434	1
CIC	Amp_11q24.1	0.435	1
GAGE2A	Del_6q24.3	0.435	1
MYST4	Del_9p23	0.435	1
NEU2	Amp_7p11.2	0.435	1
ROBO3	7q-Amp	0.435	1
ROBO3	Amp_7p11.2	0.435	1
Amp_1q32.1	Del_3p21.31	0.435	1
Amp_13q34	Del_9p23	0.435	1
TCF12	Del_12q12	0.437	1
18q-Del	Del_9p21.3	0.437	1
9q-Del	Del_12q12	0.437	1
PPL	9p-Del	0.439	1
PPL	Del_13q14.2	0.439	1
RBBP6	9p-Del	0.439	1
SCN4A	Del_13q14.2	0.439	1
STK19	14q-Del	0.439	1
IDH1	18p-Del	0.44	1
SLC6A3	Amp_7q32.3	0.44	1
7p-Amp	6q-Del	0.44	1
IRS4	Del_4q34.3	0.441	1
KRT3	Del_19q13.41	0.441	1
PIK3CA	Xp-Del	0.441	1
PTPN11	Del_4q34.3	0.441	1
ZNF709	Del_19q13.41	0.441	1
IDH2	Amp_17q25.1	0.442	1
IDH2	Del_3q29	0.442	1
IDH2	Del_5q34	0.442	1
Amp_19p13.3	Del_8q24.3	0.442	1
ARID1A	Del_14q24.3	0.443	1
NF1	PIK3CA	0.443	1
PIK3CA	6q-Del	0.443	1
ZBTB20	Amp_4q12	0.443	1
Amp_4q12	Del_14q24.3	0.443	1
NF1	19p-Amp	0.444	1
NOTCH1	13q-Del	0.444	1
NOTCH1	Del_9p23	0.444	1
19p-Amp	6q-Del	0.444	1
BRAF	Del_14q24.3	0.445	1
DDX5	Del_14q24.3	0.445	1
EMG1	Del_11p15.5	0.445	1
PPL	Del_11p15.5	0.445	1
RB1	Del_11p15.5	0.445	1
SCN4A	Del_11p15.5	0.445	1
TRERF1	Del_11p15.5	0.445	1
ZNF512B	Del_14q24.3	0.445	1
14q-Del	Amp_7q32.3	0.445	1
Amp_Xp11.22	Del_14q24.3	0.445	1
KRT3	Amp_7q31.2	0.446	1
NAP1L2	Amp_7q31.2	0.446	1
NRAS	Amp_7q31.2	0.446	1
PIK3R1	Amp_19p13.2	0.446	1
ZNF709	Amp_7q31.2	0.446	1
Del_6q22.31	Del_11p15.5	0.446	1
ZBTB20	Amp_7q31.2	0.447	1
7p-Amp	Del_5p15.33	0.447	1
ATRX	Del_22q13.31	0.448	1
CUL4B	Del_22q13.31	0.448	1
DNMT3A	Del_22q13.31	0.448	1
PDGFRA	Del_22q13.31	0.448	1
PTPN11	Amp_8q24.13	0.448	1
RBPJ	Amp_8q24.13	0.448	1
RET	Amp_8q24.13	0.448	1
SETD2	Del_22q13.31	0.448	1
STK19	Del_22q13.31	0.448	1
Amp_1q22	Del_22q13.31	0.448	1
7p-Amp	Del_6q24.3	0.449	1
12q-Del	18p-Del	0.449	1
12q-Del	Amp_11q24.1	0.449	1
18p-Del	Del_3q13.31	0.449	1
PLXNA3	Del_2q37.3	0.45	1
TNRC18	Del_2q37.3	0.45	1
SMARCA4	15q-Del	0.451	1
SMARCA4	9q-Del	0.451	1
TCF12	18q-Del	0.451	1
TCF12	22q-Del	0.451	1
10p-Amp	15q-Del	0.451	1
PTEN	11p-Del	0.452	1
EGFR	SMARCA4	0.453	1
Amp_7q32.3	Del_3q13.31	0.453	1
EGFR	Del_7p22.3	0.454	1
CREBZF	10p-Del	0.455	1
IRS4	10p-Del	0.455	1
RBPJ	10p-Del	0.455	1
TP53	Del_14q24.3	0.455	1
19p-Amp	Amp_12p13.32	0.455	1
10p-Del	Amp_2p24.3	0.455	1
10p-Del	Del_1q43	0.455	1
IDH1	Del_3p21.31	0.456	1
TCF12	7p-Amp	0.456	1
PTEN	11q-Amp	0.457	1
11q-Amp	Amp_12q14.1	0.457	1
11q-Amp	Del_3p21.31	0.457	1
11q-Amp	Del_5p15.33	0.457	1
ATRX	PTPN11	0.458	1
ATRX	TCF12	0.458	1
NIPBL	Del_6q24.3	0.458	1
NOTCH1	Xp-Del	0.458	1
PRX	11p-Del	0.458	1
STK19	11p-Del	0.458	1
GAGE2A	13q-Del	0.459	1
GAGE2A	Del_6q22.31	0.459	1
11q-Amp	Del_4q34.3	0.459	1
HTRA2	Del_1p36.32	0.46	1
MED9	Del_9p21.3	0.46	1
NEU2	Del_1p36.32	0.46	1
ZNF512B	Del_1p36.32	0.46	1
ARID1A	Amp_7q32.3	0.461	1
ARID1A	Del_3q29	0.461	1
ARID1A	Del_5q34	0.461	1
IDH1	Amp_13q34	0.461	1
IDH2	Amp_4q12	0.461	1
7q-Amp	11p-Del	0.461	1
Amp_4q12	Amp_7q32.3	0.461	1
18p-Del	Amp_12p13.32	0.462	1
Amp_11q24.1	Amp_12p13.32	0.462	1
ARID1A	Del_6q22.31	0.463	1
FAM47C	4p-Del	0.463	1
ZBTB20	Amp_19p13.2	0.463	1
4p-Del	Amp_19p13.2	0.463	1
Amp_4q12	Del_6q22.31	0.463	1
AGBL1	Del_1p32.3	0.464	1
HTRA2	Del_1p32.3	0.464	1
NEU2	Del_1p32.3	0.464	1
ZNF512B	Del_1p32.3	0.464	1
NF1	Del_12q12	0.465	1
TCF12	8q-Amp	0.465	1
TCF12	Amp_19p13.3	0.465	1
8q-Amp	15q-Del	0.465	1
8q-Amp	9q-Del	0.465	1
15q-Del	Amp_7q31.2	0.465	1
PIK3R1	Amp_1q32.1	0.467	1
14q-Del	Del_11p15.1	0.467	1
11q-Amp	Amp_8q24.13	0.469	1
Amp_11q24.1	Del_6q24.3	0.469	1
Del_19q13.42	Del_Xq21.1	0.469	1
NOTCH1	4p-Del	0.47	1
10p-Amp	Amp_7q31.2	0.47	1
7p-Amp	Xq-Del	0.47	1
22q-Del	Amp_7q31.2	0.47	1
PIK3CA	Amp_17q25.1	0.471	1
PIK3CA	Del_5q34	0.471	1
TNRC18	Del_10q26.3	0.471	1
AGBL1	19q-Del	0.472	1
ZNF512B	19q-Del	0.472	1
Del_1p36.32	Del_7p22.3	0.472	1
MYST4	6q-Del	0.475	1
NF1	Amp_13q34	0.475	1
NUDT11	6q-Del	0.475	1
13q-Del	Del_19q13.41	0.475	1
NOTCH1	6q-Del	0.476	1
SMARCA4	12q-Del	0.476	1
12q-Del	18q-Del	0.476	1
18p-Del	Del_Xq21.1	0.476	1
PLXNA3	14q-Del	0.477	1
SLC6A3	14q-Del	0.477	1
Amp_7q32.3	Del_22q13.31	0.477	1
Del_1p32.3	Del_7p22.3	0.477	1
CUL4B	Amp_10p15.3	0.478	1
STK19	Amp_10p15.3	0.478	1
7p-Amp	Del_6p25.3	0.478	1
Amp_1q22	Amp_10p15.3	0.478	1
Amp_17q25.1	Del_1p36.32	0.478	1
NUDT11	Amp_7p11.2	0.479	1
7q-Amp	Del_7p22.3	0.479	1
ARID1A	Amp_4q12	0.48	1
PIK3CA	Amp_7q32.3	0.48	1
TCF12	Amp_12q14.1	0.48	1
TCF12	Del_3p21.31	0.48	1
TCF12	Del_5p15.33	0.48	1
15q-Del	Amp_12q14.1	0.48	1
1p-Del	Amp_11q24.1	0.48	1
9q-Del	Del_5p15.33	0.48	1
FAM47C	IDH2	0.481	1
FAM47C	Amp_17q25.1	0.481	1
IDH2	Amp_19p13.2	0.481	1
NIPBL	Amp_17q25.1	0.481	1
NIPBL	Del_3q29	0.481	1
NIPBL	Del_5q34	0.481	1
Amp_19p13.2	Del_5q34	0.481	1
Amp_19p13.2	Del_11p15.1	0.481	1
PTPN11	Del_6q24.3	0.483	1
RET	Del_6q24.3	0.483	1
ZBTB20	Amp_1q32.1	0.484	1
10q-Del	Del_3p21.31	0.484	1
4p-Del	Amp_1q32.1	0.484	1
TCF12	10q-Del	0.485	1
4p-Del	9p-Del	0.485	1
CIB1	Del_9p23	0.486	1
NF1	SMARCA4	0.486	1
PIK3R1	Del_22q13.31	0.486	1
PLXNA3	Del_22q13.31	0.486	1
SLC6A3	Del_18q23	0.486	1
SLC6A3	Del_22q13.31	0.486	1
TNRC18	Del_18q23	0.486	1
TNRC18	Del_22q13.31	0.486	1
ZMIZ1	Del_22q13.31	0.486	1
Amp_7p11.2	Del_5p15.33	0.486	1
Amp_17q25.1	Del_1p32.3	0.486	1
ARID2	Amp_12p13.32	0.487	1
MYST4	Amp_12p13.32	0.487	1
Amp_12p13.32	Del_7p22.3	0.487	1
ATRX	Amp_3q26.33	0.488	1
IDH1	IRS4	0.488	1
IDH1	RBPJ	0.488	1
Del_11p15.1	Del_18q23	0.488	1
CIC	SMOC1	0.489	1
EMG1	10q-Del	0.489	1
MYT1	10q-Del	0.489	1
PPL	10q-Del	0.489	1
RBBP6	10q-Del	0.489	1
SCN4A	10q-Del	0.489	1
TRERF1	10q-Del	0.489	1
CUL4B	Del_9p23	0.49	1
IDH1	13q-Del	0.49	1
SLC6A3	Amp_7q31.2	0.49	1
9p-Del	Del_Xq21.1	0.49	1
Amp_1q32.1	Del_6q24.3	0.49	1
7q-Amp	Del_6q24.3	0.491	1
GAGE2A	Del_2q37.3	0.492	1
FAM47C	13q-Del	0.493	1
FAM47C	Del_6q22.31	0.493	1
NIPBL	Del_6q22.31	0.493	1
MYST4	Del_14q24.3	0.494	1
NUDT11	Del_14q24.3	0.494	1
Amp_13q34	Del_14q24.3	0.494	1
PLXNA3	11p-Del	0.495	1
SLC6A3	11p-Del	0.495	1
TNRC18	11p-Del	0.495	1
ZMIZ1	11p-Del	0.495	1
15q-Del	Del_4q34.3	0.495	1
EMG1	Del_4q34.3	0.496	1
PPL	Del_4q34.3	0.496	1
SCN4A	Del_4q34.3	0.496	1
TRERF1	Del_4q34.3	0.496	1
IDH2	NOTCH1	0.497	1
PTEN	Del_4q34.3	0.497	1
CREBZF	Del_11p15.1	0.498	1
PTPN11	Del_11p15.1	0.498	1
RBPJ	Del_11p15.1	0.498	1
RET	Del_11p15.1	0.498	1
14q-Del	4p-Del	0.498	1
18p-Del	Del_11p15.1	0.498	1
FAM47C	Amp_4q12	0.499	1
NIPBL	Amp_4q12	0.499	1
13q-Del	1p-Del	0.499	1
PIK3CA	Del_13q14.2	0.5	1
IDH2	Amp_1q32.1	0.501	1
Amp_1q32.1	Amp_17q25.1	0.501	1
Amp_1q32.1	Del_3q29	0.501	1
EMG1	Amp_8q24.13	0.502	1
RB1	Amp_8q24.13	0.502	1
RET	Del_9p21.3	0.502	1
SCN4A	Amp_8q24.13	0.502	1
18q-Del	Del_Xq21.1	0.502	1
AGBL1	Del_13q14.2	0.504	1
BRAF	Del_13q14.2	0.504	1
DDX5	Del_13q14.2	0.504	1
HTRA2	Del_13q14.2	0.504	1
NEU2	Del_13q14.2	0.504	1
ROBO3	Del_13q14.2	0.504	1
ZNF512B	9p-Del	0.504	1
19p-Amp	18p-Del	0.504	1
19p-Amp	4q-Del	0.504	1
18p-Del	Amp_3q26.33	0.504	1
18p-Del	Amp_Xp11.22	0.504	1
4q-Del	Amp_3q26.33	0.504	1
4q-Del	Amp_Xp11.22	0.504	1
Amp_7p11.2	Del_4q34.3	0.504	1
PTEN	12q-Del	0.505	1
ZBTB20	11q-Amp	0.505	1
7p-Amp	Del_18q23	0.505	1
4p-Del	Del_8q24.3	0.505	1
9q-Del	Amp_8q24.13	0.505	1
Amp_7q31.2	Amp_10p15.3	0.505	1
Amp_12q14.1	Del_3q13.31	0.505	1
Del_3q13.31	Del_5p15.33	0.505	1
ANKRD36	FUBP1	0.506	1
ATRX	SRPX	0.506	1
CREBZF	13q-Del	0.506	1
FUBP1	PTPN11	0.506	1
FUBP1	Amp_2p24.3	0.506	1
FUBP1	Del_1q43	0.506	1
FUBP1	Del_18q23	0.506	1
PTPN11	Del_6q22.31	0.506	1
RET	Del_6q22.31	0.506	1
13q-Del	Del_1q43	0.506	1
Del_4q34.3	Del_10q26.3	0.506	1
13q-Del	Del_19q13.42	0.507	1
AGBL1	1p-Del	0.508	1
HTRA2	1p-Del	0.508	1
NEU2	1p-Del	0.508	1
ROBO3	1p-Del	0.508	1
ZNF512B	1p-Del	0.508	1
6q-Del	Amp_19p13.3	0.508	1
Amp_7q32.3	Del_Xq21.1	0.508	1
EMG1	10p-Del	0.509	1
MYT1	10p-Del	0.509	1
PDGFRA	6q-Del	0.509	1
PPL	10p-Del	0.509	1
RBBP6	10p-Del	0.509	1
SCN4A	10p-Del	0.509	1
SETD2	6q-Del	0.509	1
TRERF1	10p-Del	0.509	1
4q-Del	Amp_7q32.3	0.509	1
Amp_7q32.3	Del_6p25.3	0.509	1
BRAF	Del_11p15.5	0.51	1
NEU2	Del_11p15.5	0.51	1
NF1	Amp_7q32.3	0.51	1
ROBO3	Del_11p15.5	0.51	1
ZNF512B	Del_11p15.5	0.51	1
Amp_8q24.13	Del_3p21.31	0.51	1
PIK3R1	TCF12	0.511	1
18p-Del	9p-Del	0.511	1
ARID1A	Del_2q37.3	0.512	1
4p-Del	Del_22q13.31	0.512	1
Amp_1q32.1	Del_11p15.1	0.512	1
Amp_4q12	Del_2q37.3	0.512	1
Amp_11q24.1	Del_6q22.31	0.513	1
KRT3	7q-Amp	0.514	1
NAP1L2	7q-Amp	0.514	1
NAP1L2	Amp_7p11.2	0.514	1
NRAS	7q-Amp	0.514	1
NRAS	Amp_7p11.2	0.514	1
ZNF709	7q-Amp	0.514	1
ZNF709	Amp_7p11.2	0.514	1
14q-Del	Del_19q13.42	0.514	1
ATRX	Del_9p21.3	0.515	1
MED9	Amp_7q32.3	0.515	1
TNRC18	Amp_10p15.3	0.515	1
ZMIZ1	Amp_10p15.3	0.515	1
7p-Amp	13q-Del	0.515	1
TCF12	10p-Del	0.516	1
Del_19q13.41	Del_Xq21.1	0.516	1
19p-Amp	Del_12q12	0.517	1
GAGE2A	14q-Del	0.518	1
ARID1A	Amp_1q32.1	0.519	1
CUL4B	Amp_12p13.32	0.52	1
STK19	Amp_12p13.32	0.52	1
13q-Del	19q-Del	0.52	1
MED9	TP53	0.521	1
10p-Amp	Del_6q24.3	0.521	1
IDH1	Del_18q23	0.522	1
IDH2	Del_8q24.3	0.522	1
7q-Amp	Del_6p25.3	0.522	1
6q-Del	Del_19q13.42	0.522	1
Amp_7p11.2	Del_6p25.3	0.522	1
Amp_17q25.1	Del_8q24.3	0.522	1
Del_4q34.3	Del_6q24.3	0.522	1
CIB1	Del_14q24.3	0.523	1
KRT3	Del_14q24.3	0.523	1
NAP1L2	Del_14q24.3	0.523	1
ZNF709	Del_14q24.3	0.523	1
10p-Del	Del_3p21.31	0.523	1
10p-Del	Del_5p15.33	0.523	1
14q-Del	1p-Del	0.523	1
13q-Del	Amp_1q32.1	0.524	1
14q-Del	Del_3q29	0.524	1
NOTCH1	Amp_4q12	0.525	1
Amp_12p13.32	Amp_19p13.3	0.525	1
AGBL1	TP53	0.526	1
MYST4	Del_9p21.3	0.526	1
ZBTB20	11p-Del	0.526	1
Amp_13q34	Del_9p21.3	0.526	1
ATRX	PLXNA3	0.527	1
ATRX	ZMIZ1	0.527	1
ATRX	Xp-Del	0.527	1
GAGE2A	Del_18q23	0.527	1
TCF12	ZBTB20	0.527	1
ZBTB20	9q-Del	0.527	1
Del_4q34.3	Del_6p25.3	0.527	1
FAM47C	PIK3CA	0.529	1
PIK3CA	Amp_19p13.2	0.529	1
ANKRD36	PIK3CA	0.53	1
NF1	Del_5p15.33	0.53	1
PIK3CA	RBPJ	0.53	1
PIK3CA	Amp_2p24.3	0.53	1
PIK3CA	Del_1q43	0.53	1
PTEN	Del_Xq21.1	0.53	1
RET	TP53	0.53	1
SMARCA4	Amp_3q26.33	0.53	1
10p-Amp	19p-Amp	0.53	1
10p-Amp	Amp_3q26.33	0.53	1
19p-Amp	18q-Del	0.53	1
18q-Del	Amp_3q26.33	0.53	1
18q-Del	Amp_Xp11.22	0.53	1
6q-Del	Del_5p15.33	0.53	1
Amp_17q25.1	Del_11p15.5	0.53	1
DNMT3A	Amp_7p11.2	0.532	1
PDGFRA	7q-Amp	0.532	1
ARID1A	Amp_7q31.2	0.533	1
IDH1	MED9	0.533	1
IDH1	TMEM216	0.533	1
NEU2	7p-Amp	0.533	1
ROBO3	7p-Amp	0.533	1
Amp_8q24.13	Del_10q26.3	0.533	1
Del_9p23	Del_12q12	0.533	1
ARID2	18p-Del	0.534	1
NUDT11	18p-Del	0.534	1
NUDT11	Amp_11q24.1	0.534	1
PLXNA3	TP53	0.534	1
SMOC1	Del_10q26.3	0.534	1
TMEM216	Del_10q26.3	0.534	1
TP53	ZMIZ1	0.534	1
18p-Del	Del_7p22.3	0.534	1
4q-Del	Amp_13q34	0.534	1
PIK3R1	Del_3q13.31	0.535	1
4q-Del	Amp_11q24.1	0.536	1
ARID2	TP53	0.537	1
EMG1	Del_6q24.3	0.537	1
GAGE2A	Del_10q26.3	0.537	1
MYST4	TP53	0.537	1
MYT1	Del_6q24.3	0.537	1
PPL	Del_6q24.3	0.537	1
RBBP6	Del_6q24.3	0.537	1
TRERF1	Del_6q24.3	0.537	1
CREBZF	Del_2q37.3	0.538	1
PTPN11	Del_2q37.3	0.538	1
RBPJ	Del_2q37.3	0.538	1
Amp_17q25.1	Del_22q13.31	0.538	1
18p-Del	Del_9p21.3	0.539	1
11q-Amp	Amp_4q12	0.54	1
1p-Del	Del_7p22.3	0.541	1
13q-Del	Amp_7q32.3	0.542	1
Amp_19p13.2	Del_2q37.3	0.542	1
Del_10q26.3	Del_18q23	0.542	1
DNMT3A	Del_19q13.42	0.543	1
19p-Amp	8q-Amp	0.543	1
7q-Amp	Del_11p15.1	0.543	1
Amp_8q24.13	Del_3q13.31	0.543	1
Amp_19p13.3	Amp_Xp11.22	0.543	1
CIC	PTPN11	0.544	1
IDH1	18q-Del	0.544	1
IDH2	TCF12	0.544	1
IDH2	15q-Del	0.544	1
IDH2	9q-Del	0.544	1
TCF12	Amp_17q25.1	0.544	1
TCF12	Del_3q29	0.544	1
TCF12	Del_5q34	0.544	1
15q-Del	Amp_17q25.1	0.544	1
15q-Del	Del_3q29	0.544	1
EGFR	PIK3R1	0.545	1
PIK3R1	10q-Del	0.545	1
SLC6A3	6q-Del	0.545	1
TNRC18	6q-Del	0.545	1
ANKRD36	NOTCH1	0.546	1
ARID2	Del_12q12	0.546	1
MED9	Amp_7q31.2	0.546	1
MYST4	Del_12q12	0.546	1
NOTCH1	PTPN11	0.546	1
NOTCH1	RBPJ	0.546	1
DNMT3A	Del_14q24.3	0.547	1
PDGFRA	Del_14q24.3	0.547	1
STK19	Del_14q24.3	0.547	1
11q-Amp	Amp_7p11.2	0.547	1
PLXNA3	Del_9p23	0.548	1
TNRC18	Del_9p23	0.548	1
ARID1A	TP53	0.549	1
EMG1	Del_11p15.1	0.551	1
PPL	Del_11p15.1	0.551	1
RB1	Del_11p15.1	0.551	1
SCN4A	Del_11p15.1	0.551	1
TRERF1	Del_11p15.1	0.551	1
ZBTB20	12q-Del	0.551	1
ZBTB20	Del_3q13.31	0.551	1
Amp_11q24.1	Del_19q13.42	0.551	1
ARID1A	14q-Del	0.552	1
ATRX	Amp_4q12	0.552	1
DDX5	10q-Del	0.552	1
HTRA2	10q-Del	0.552	1
NEU2	10q-Del	0.552	1
ROBO3	10q-Del	0.552	1
ZNF512B	10q-Del	0.552	1
NOTCH1	Amp_19p13.2	0.554	1
SLC6A3	Amp_12p13.32	0.555	1
ZMIZ1	Amp_12p13.32	0.555	1
4p-Del	Amp_10p15.3	0.555	1
FUBP1	11q-Amp	0.557	1
PTEN	Amp_Xp11.22	0.557	1
Amp_12q14.1	Amp_Xp11.22	0.557	1
Amp_Xp11.22	Del_3p21.31	0.557	1
BRAF	Del_4q34.3	0.558	1
EMG1	Del_6q22.31	0.558	1
FAM47C	11q-Amp	0.558	1
FUBP1	Xq-Del	0.558	1
MYT1	Del_6q22.31	0.558	1
NEU2	Del_4q34.3	0.558	1
NIPBL	11q-Amp	0.558	1
NIPBL	Del_8q24.3	0.558	1
PIK3CA	Amp_11q24.1	0.558	1
PIK3CA	Del_9p23	0.558	1
PPL	13q-Del	0.558	1
PPL	Del_6q22.31	0.558	1
RBBP6	Del_6q22.31	0.558	1
ROBO3	Del_4q34.3	0.558	1
SCN4A	13q-Del	0.558	1
TCF12	Del_6q24.3	0.558	1
TRERF1	13q-Del	0.558	1
TRERF1	Del_6q22.31	0.558	1
11q-Amp	Amp_19p13.2	0.558	1
14q-Del	Del_2q37.3	0.558	1
Amp_19p13.2	Del_8q24.3	0.558	1
ARID2	18q-Del	0.559	1
DNMT3A	Del_1p36.32	0.559	1
MYST4	10p-Amp	0.559	1
MYST4	22q-Del	0.559	1
NUDT11	18q-Del	0.559	1
PIK3R1	7q-Amp	0.559	1
SMARCA4	Amp_13q34	0.559	1
18q-Del	Del_7p22.3	0.559	1
PIK3CA	Del_22q13.31	0.56	1
PIK3R1	Del_Xq21.1	0.56	1
ARID1A	9q-Del	0.561	1
15q-Del	Amp_4q12	0.561	1
PIK3CA	Del_6q24.3	0.563	1
PTPN11	14q-Del	0.563	1
RBPJ	14q-Del	0.563	1
14q-Del	19q-Del	0.563	1
14q-Del	Amp_2p24.3	0.563	1
BRAF	Amp_8q24.13	0.564	1
EGFR	GAGE2A	0.564	1
NEU2	Amp_8q24.13	0.564	1
ROBO3	Amp_8q24.13	0.564	1
ZNF512B	Amp_8q24.13	0.564	1
Amp_11q24.1	Del_10q26.3	0.564	1
ARID1A	Del_22q13.31	0.565	1
CUL4B	Del_1p32.3	0.565	1
DNMT3A	Del_1p32.3	0.565	1
GAGE2A	IDH1	0.565	1
Amp_1q22	Del_1p32.3	0.565	1
Amp_4q12	Del_18q23	0.565	1
CUL4B	4q-Del	0.566	1
CUL4B	Amp_11q24.1	0.566	1
DNMT3A	4q-Del	0.566	1
PDGFRA	18p-Del	0.566	1
PDGFRA	Amp_11q24.1	0.566	1
PRX	Amp_11q24.1	0.566	1
SETD2	4q-Del	0.566	1
SETD2	Amp_11q24.1	0.566	1
STK19	4q-Del	0.566	1
STK19	Amp_11q24.1	0.566	1
18p-Del	Amp_1q22	0.566	1
IDH2	12q-Del	0.567	1
IDH2	Del_3q13.31	0.567	1
12q-Del	Amp_17q25.1	0.567	1
Amp_7q31.2	Del_Xq21.1	0.567	1
Amp_17q25.1	Del_3q13.31	0.567	1
7q-Amp	18p-Del	0.569	1
18p-Del	Amp_7p11.2	0.569	1
Amp_Xp11.22	Del_19q13.42	0.569	1
DDX5	10p-Del	0.57	1
EGFR	ZBTB20	0.57	1
EGFR	4p-Del	0.57	1
HTRA2	10p-Del	0.57	1
NEU2	10p-Del	0.57	1
ROBO3	10p-Del	0.57	1
ZNF512B	10p-Del	0.57	1
CREBZF	Del_22q13.31	0.571	1
PTPN11	Del_18q23	0.571	1
RBPJ	Del_22q13.31	0.571	1
19p-Amp	Del_6p25.3	0.571	1
Amp_2p24.3	Del_22q13.31	0.571	1
Amp_7q31.2	Del_6q24.3	0.571	1
Amp_Xp11.22	Del_6p25.3	0.571	1
Del_1p36.32	Del_1q43	0.571	1
Del_1q43	Del_18q23	0.571	1
Del_1q43	Del_22q13.31	0.571	1
ARID2	8q-Amp	0.572	1
ARID2	Amp_19p13.3	0.572	1
MYST4	Amp_19p13.3	0.572	1
18q-Del	9p-Del	0.572	1
Amp_19p13.3	Del_7p22.3	0.572	1
CUL4B	19q-Del	0.575	1
DNMT3A	19q-Del	0.575	1
PTPN11	Del_1p32.3	0.575	1
RET	Del_1p32.3	0.575	1
10p-Amp	18p-Del	0.575	1
10p-Amp	Amp_11q24.1	0.575	1
Del_1p32.3	Del_1q43	0.575	1
NOTCH1	14q-Del	0.577	1
11q-Amp	Amp_1q32.1	0.577	1
7p-Amp	18p-Del	0.577	1
10q-Del	11p-Del	0.577	1
DNMT3A	Del_12q12	0.578	1
PRX	Del_12q12	0.578	1
STK19	Del_12q12	0.578	1
Amp_1q22	Del_12q12	0.578	1
CIB1	9p-Del	0.579	1
FAM47C	TCF12	0.579	1
FAM47C	15q-Del	0.579	1
FAM47C	9q-Del	0.579	1
KRT3	9p-Del	0.579	1
KRT3	Del_13q14.2	0.579	1
NAP1L2	Del_13q14.2	0.579	1
NIPBL	TCF12	0.579	1
SRPX	Del_13q14.2	0.579	1
TCF12	Del_11p15.1	0.579	1
ZNF709	9p-Del	0.579	1
ZNF709	Del_13q14.2	0.579	1
15q-Del	Del_11p15.1	0.579	1
CREBZF	11p-Del	0.58	1
EMG1	PIK3CA	0.58	1
PIK3CA	Xq-Del	0.58	1
PTPN11	11p-Del	0.58	1
RBPJ	11p-Del	0.58	1
RET	11p-Del	0.58	1
14q-Del	Amp_19p13.2	0.58	1
ATRX	SCN4A	0.581	1
MYST4	9p-Del	0.581	1
PIK3CA	11p-Del	0.581	1
9p-Del	Amp_13q34	0.581	1
Del_7p22.3	Del_13q14.2	0.581	1
MED9	Del_9p23	0.582	1
PIK3R1	10p-Del	0.582	1
RET	Amp_7q32.3	0.582	1
TMEM216	Del_9p23	0.582	1
Del_9p21.3	Del_12q12	0.582	1
GAGE2A	NF1	0.583	1
GAGE2A	6q-Del	0.583	1
PIK3CA	Del_12q12	0.583	1
ARID1A	12q-Del	0.584	1
ARID1A	Del_3q13.31	0.584	1
DNMT3A	Del_19q13.41	0.584	1
NAP1L2	Del_11p15.5	0.584	1
RET	19q-Del	0.584	1
19q-Del	Del_1q43	0.584	1
ARID2	Del_3p21.31	0.585	1
ARID2	Del_5p15.33	0.585	1
MYST4	Amp_12q14.1	0.585	1
MYST4	Del_3p21.31	0.585	1
NUDT11	Amp_12q14.1	0.585	1
NUDT11	Del_5p15.33	0.585	1
PTEN	Amp_13q34	0.585	1
PTEN	Del_7p22.3	0.585	1
Amp_12q14.1	Del_7p22.3	0.585	1
Del_5p15.33	Del_7p22.3	0.585	1
NF1	Del_13q14.2	0.586	1
PIK3R1	19p-Amp	0.586	1
PIK3R1	Amp_Xp11.22	0.586	1
Amp_8q24.13	Del_18q23	0.586	1
12q-Del	Del_9p23	0.587	1
EMG1	Del_9p21.3	0.588	1
MYT1	Del_2q37.3	0.588	1
MYT1	Del_9p21.3	0.588	1
PPL	Del_2q37.3	0.588	1
RB1	Del_9p21.3	0.588	1
RBBP6	Del_2q37.3	0.588	1
SCN4A	Del_2q37.3	0.588	1
SCN4A	Del_9p21.3	0.588	1
SMARCA4	Amp_7q32.3	0.588	1
Amp_7q31.2	Del_6p25.3	0.588	1
MYST4	Del_11p15.5	0.589	1
NOTCH1	18p-Del	0.589	1
NOTCH1	Amp_11q24.1	0.589	1
SLC6A3	7q-Amp	0.589	1
SLC6A3	Amp_7p11.2	0.589	1
ZBTB20	Del_4q34.3	0.589	1
Xp-Del	Amp_7p11.2	0.589	1
Del_6q24.3	Del_19q13.42	0.589	1
Del_7p22.3	Del_11p15.5	0.589	1
CUL4B	22q-Del	0.59	1
DNMT3A	22q-Del	0.59	1
FUBP1	TCF12	0.59	1
PDGFRA	18q-Del	0.59	1
PDGFRA	22q-Del	0.59	1
SETD2	10p-Amp	0.59	1
SETD2	22q-Del	0.59	1
SMARCA4	Amp_1q22	0.59	1
STK19	10p-Amp	0.59	1
STK19	22q-Del	0.59	1
TCF12	13q-Del	0.59	1
TCF12	Del_6q22.31	0.59	1
10p-Amp	Amp_1q22	0.59	1
18q-Del	Amp_1q22	0.59	1
22q-Del	Amp_1q22	0.59	1
IDH2	Del_Xq21.1	0.591	1
PIK3CA	Del_8q24.3	0.591	1
TP53	Del_9p21.3	0.591	1
7q-Amp	15q-Del	0.591	1
NF1	Del_1p32.3	0.592	1
GAGE2A	Amp_12p13.32	0.593	1
KRT3	Del_1p36.32	0.593	1
ZNF709	Del_1p36.32	0.593	1
10p-Amp	Del_12q12	0.593	1
12q-Del	Del_6q24.3	0.593	1
Amp_7p11.2	Del_13q14.2	0.593	1
Amp_19p13.2	Del_18q23	0.593	1
PDGFRA	Del_9p21.3	0.594	1
SETD2	Del_9p21.3	0.594	1
EGFR	Del_5q34	0.595	1
18p-Del	Amp_19p13.3	0.595	1
4q-Del	Amp_19p13.3	0.595	1
AGBL1	Del_6q24.3	0.596	1
BRAF	Del_6q24.3	0.596	1
DDX5	Del_6q24.3	0.596	1
KRAS	Del_9p21.3	0.596	1
KRT3	Del_1p32.3	0.596	1
NOTCH1	Xq-Del	0.596	1
ZBTB20	7q-Amp	0.596	1
ZNF709	Del_1p32.3	0.596	1
11q-Amp	Del_8q24.3	0.596	1
4p-Del	Amp_7p11.2	0.596	1
CREBZF	Amp_10p15.3	0.597	1
MED9	Del_19q13.42	0.597	1
PTPN11	Amp_10p15.3	0.597	1
RET	Amp_10p15.3	0.597	1
TMEM216	Del_19q13.42	0.597	1
14q-Del	Del_19q13.41	0.597	1
6q-Del	Del_19q13.41	0.597	1
Amp_2p24.3	Amp_10p15.3	0.597	1
Amp_10p15.3	Del_1q43	0.597	1
MYST4	Del_6p25.3	0.599	1
PIK3R1	Del_10q26.3	0.599	1
PLXNA3	4q-Del	0.599	1
SLC6A3	18p-Del	0.599	1
SLC6A3	4q-Del	0.599	1
SLC6A3	Amp_11q24.1	0.599	1
TNRC18	18p-Del	0.599	1
ZMIZ1	4q-Del	0.599	1
ZMIZ1	Amp_11q24.1	0.599	1
4q-Del	Xp-Del	0.599	1
FAM47C	IDH1	0.6	1
ZBTB20	19p-Amp	0.6	1
ZBTB20	6q-Del	0.6	1
ZBTB20	Amp_3q26.33	0.6	1
ZBTB20	Amp_Xp11.22	0.6	1
19p-Amp	4p-Del	0.6	1
4p-Del	6q-Del	0.6	1
4p-Del	Amp_3q26.33	0.6	1
Amp_7q32.3	Del_6q24.3	0.6	1
FAM47C	12q-Del	0.601	1
FAM47C	Del_3q13.31	0.601	1
NIPBL	12q-Del	0.601	1
NIPBL	Del_3q13.31	0.601	1
ZBTB20	Amp_8q24.13	0.601	1
12q-Del	Amp_19p13.2	0.601	1
Amp_19p13.2	Del_3q13.31	0.601	1
CUL4B	8q-Amp	0.602	1
PDGFRA	8q-Amp	0.602	1
PDGFRA	Amp_19p13.3	0.602	1
SETD2	8q-Amp	0.602	1
TNRC18	Del_14q24.3	0.602	1
ZMIZ1	Del_14q24.3	0.602	1
12q-Del	Del_9p21.3	0.602	1
KRT3	19q-Del	0.603	1
ZNF709	19q-Del	0.603	1
Amp_19p13.3	Del_13q14.2	0.603	1
13q-Del	Amp_8q24.13	0.604	1
Amp_8q24.13	Del_6q22.31	0.604	1
Amp_12p13.32	Del_10q26.3	0.604	1
KRT3	7p-Amp	0.605	1
NAP1L2	7p-Amp	0.605	1
NRAS	7p-Amp	0.605	1
ZNF709	7p-Amp	0.605	1
8q-Amp	Del_9p23	0.605	1
6q-Del	Amp_7q31.2	0.605	1
CREBZF	EGFR	0.606	1
EGFR	PTPN11	0.606	1
EGFR	Amp_2p24.3	0.606	1
EGFR	Del_1q43	0.606	1
NIPBL	11p-Del	0.606	1
7p-Amp	Del_2q37.3	0.606	1
11p-Del	Amp_19p13.2	0.606	1
ARID1A	Del_Xq21.1	0.607	1
MED9	7q-Amp	0.607	1
MED9	Amp_7p11.2	0.607	1
PIK3CA	SMARCA4	0.607	1
PIK3CA	22q-Del	0.607	1
SMOC1	Amp_7p11.2	0.607	1
NF1	7q-Amp	0.608	1
ANKRD36	Del_10q26.3	0.609	1
ARID1A	7p-Amp	0.609	1
BRAF	Del_11p15.1	0.609	1
DDX5	Del_11p15.1	0.609	1
NEU2	Del_11p15.1	0.609	1
RBPJ	Del_10q26.3	0.609	1
ROBO3	Del_11p15.1	0.609	1
ZNF512B	Del_11p15.1	0.609	1
10q-Del	Del_5q34	0.609	1
PLXNA3	Del_12q12	0.61	1
SLC6A3	Del_12q12	0.61	1
TNRC18	Del_12q12	0.61	1
ZMIZ1	Del_12q12	0.61	1
Xp-Del	Del_12q12	0.61	1
Amp_19p13.2	Del_1p36.32	0.61	1
EMG1	14q-Del	0.611	1
MYT1	14q-Del	0.611	1
PPL	14q-Del	0.611	1
RBBP6	14q-Del	0.611	1
SCN4A	14q-Del	0.611	1
SMARCA4	18q-Del	0.612	1
NOTCH1	Del_12q12	0.613	1
PIK3R1	Del_7p22.3	0.613	1
19p-Amp	Del_4q34.3	0.613	1
8q-Amp	Del_12q12	0.613	1
Amp_3q26.33	Del_4q34.3	0.613	1
Amp_19p13.3	Del_12q12	0.613	1
Amp_Xp11.22	Del_19q13.41	0.613	1
NOTCH1	11q-Amp	0.614	1
7q-Amp	Del_18q23	0.614	1
7q-Amp	Del_22q13.31	0.614	1
Amp_7p11.2	Del_18q23	0.614	1
AGBL1	FUBP1	0.615	1
AGBL1	13q-Del	0.615	1
BRAF	13q-Del	0.615	1
BRAF	Del_6q22.31	0.615	1
CUL4B	Amp_12q14.1	0.615	1
CUL4B	Del_3p21.31	0.615	1
DDX5	13q-Del	0.615	1
DDX5	Del_6q22.31	0.615	1
DNMT3A	Amp_12q14.1	0.615	1
DNMT3A	Del_3p21.31	0.615	1
DNMT3A	Del_5p15.33	0.615	1
FUBP1	HTRA2	0.615	1
FUBP1	NEU2	0.615	1
HTRA2	13q-Del	0.615	1
IDH2	19p-Amp	0.615	1
IDH2	Amp_3q26.33	0.615	1
IDH2	Amp_Xp11.22	0.615	1
NEU2	13q-Del	0.615	1
PRX	Amp_12q14.1	0.615	1
PTEN	4q-Del	0.615	1
PTEN	Amp_1q22	0.615	1
PTEN	Amp_11q24.1	0.615	1
ROBO3	13q-Del	0.615	1
SETD2	Del_3p21.31	0.615	1
SETD2	Del_5p15.33	0.615	1
STK19	Del_5p15.33	0.615	1
ZBTB20	Amp_12p13.32	0.615	1
19p-Amp	Amp_17q25.1	0.615	1
19p-Amp	Del_5q34	0.615	1
18p-Del	Del_3p21.31	0.615	1
18p-Del	Del_5p15.33	0.615	1
4q-Del	Amp_12q14.1	0.615	1
Amp_1q22	Del_3p21.31	0.615	1
Amp_1q22	Del_5p15.33	0.615	1
Amp_11q24.1	Amp_12q14.1	0.615	1
Amp_11q24.1	Del_3p21.31	0.615	1
Amp_11q24.1	Del_5p15.33	0.615	1
Amp_17q25.1	Amp_Xp11.22	0.615	1
TCF12	Del_8q24.3	0.616	1
TMEM216	Del_14q24.3	0.616	1
ZBTB20	Del_14q24.3	0.616	1
11q-Amp	9q-Del	0.616	1
15q-Del	Del_8q24.3	0.616	1
Amp_12q14.1	Del_6q22.31	0.616	1
NOTCH1	11p-Del	0.617	1
PIK3CA	13q-Del	0.618	1
PIK3CA	Del_6q22.31	0.618	1
Amp_1q32.1	Del_3q13.31	0.618	1
EMG1	Del_18q23	0.619	1
EMG1	Del_22q13.31	0.619	1
MYT1	Del_18q23	0.619	1
PPL	Del_18q23	0.619	1
PPL	Del_22q13.31	0.619	1
RBBP6	Del_18q23	0.619	1
RBBP6	Del_22q13.31	0.619	1
SCN4A	Del_18q23	0.619	1
SCN4A	Del_22q13.31	0.619	1
TRERF1	Del_22q13.31	0.619	1
Xq-Del	Del_18q23	0.619	1
Amp_11q24.1	Del_19q13.41	0.619	1
AGBL1	Del_19q13.42	0.62	1
DDX5	Del_19q13.42	0.62	1
HTRA2	Del_19q13.42	0.62	1
MED9	Del_19q13.41	0.62	1
NEU2	Del_19q13.42	0.62	1
TMEM216	Del_19q13.41	0.62	1
CIC	KRAS	0.621	1
IDH1	Del_13q14.2	0.621	1
CIB1	10q-Del	0.622	1
NAP1L2	10q-Del	0.622	1
NRAS	10q-Del	0.622	1
NUDT11	7p-Amp	0.622	1
PLXNA3	10p-Amp	0.622	1
PLXNA3	22q-Del	0.622	1
SLC6A3	18q-Del	0.622	1
SLC6A3	22q-Del	0.622	1
SMARCA4	Xp-Del	0.622	1
TNRC18	10p-Amp	0.622	1
TNRC18	18q-Del	0.622	1
TNRC18	22q-Del	0.622	1
ZMIZ1	10p-Amp	0.622	1
ZMIZ1	22q-Del	0.622	1
ZNF709	10q-Del	0.622	1
10p-Amp	Xp-Del	0.622	1
Amp_3q26.33	Amp_8q24.13	0.622	1
FAM47C	Del_Xq21.1	0.623	1
NIPBL	Del_Xq21.1	0.623	1
PIK3CA	9q-Del	0.623	1
Amp_19p13.2	Del_Xq21.1	0.623	1
ANKRD36	NF1	0.624	1
ARID2	Amp_7q32.3	0.624	1
CREBZF	NF1	0.624	1
DNMT3A	1p-Del	0.624	1
IDH2	NF1	0.624	1
NF1	RBPJ	0.624	1
NF1	Amp_2p24.3	0.624	1
NF1	Amp_17q25.1	0.624	1
NF1	Del_1q43	0.624	1
NUDT11	Amp_7q32.3	0.624	1
PTPN11	6q-Del	0.624	1
RBPJ	6q-Del	0.624	1
RET	6q-Del	0.624	1
12q-Del	13q-Del	0.624	1
6q-Del	Del_5q34	0.624	1
Del_1p36.32	Del_14q24.3	0.624	1
ANKRD36	Amp_7q31.2	0.625	1
RET	1p-Del	0.625	1
RET	Amp_7q31.2	0.625	1
1p-Del	Del_1q43	0.625	1
Amp_7q31.2	Del_1q43	0.625	1
Del_12q12	Del_14q24.3	0.625	1
CIC	MYT1	0.626	1
CIC	RB1	0.626	1
CIC	TRERF1	0.626	1
ARID2	4p-Del	0.627	1
ATRX	Del_4q34.3	0.627	1
EMG1	11p-Del	0.627	1
MYST4	4p-Del	0.627	1
NAP1L2	Del_4q34.3	0.627	1
NUDT11	4p-Del	0.627	1
PPL	11p-Del	0.627	1
RB1	11p-Del	0.627	1
SCN4A	11p-Del	0.627	1
SRPX	Del_4q34.3	0.627	1
TRERF1	11p-Del	0.627	1
ZBTB20	Amp_13q34	0.627	1
ZBTB20	Del_7p22.3	0.627	1
4p-Del	Amp_13q34	0.627	1
SETD2	Del_6p25.3	0.628	1
STK19	Del_6p25.3	0.628	1
Del_6q22.31	Del_19q13.42	0.628	1
CUL4B	9p-Del	0.629	1
CUL4B	Del_13q14.2	0.629	1
PRX	Del_13q14.2	0.629	1
STK19	Del_13q14.2	0.629	1
Amp_1q22	Del_13q14.2	0.629	1
Amp_1q32.1	Del_13q14.2	0.629	1
Amp_11q24.1	Del_4q34.3	0.63	1
ARID1A	19p-Amp	0.631	1
ARID1A	Amp_3q26.33	0.631	1
ARID1A	Amp_Xp11.22	0.631	1
10p-Amp	Amp_19p13.3	0.631	1
19p-Amp	Amp_4q12	0.631	1
18q-Del	Amp_19p13.3	0.631	1
Del_13q14.2	Del_19q13.41	0.631	1
IDH2	Amp_8q24.13	0.632	1
PIK3R1	Del_6q24.3	0.632	1
NAP1L2	Amp_8q24.13	0.633	1
NRAS	Amp_8q24.13	0.633	1
SRPX	Amp_8q24.13	0.633	1
ZNF709	Amp_8q24.13	0.633	1
CREBZF	Amp_12p13.32	0.634	1
GAGE2A	18p-Del	0.634	1
GAGE2A	4q-Del	0.634	1
GAGE2A	Amp_11q24.1	0.634	1
IDH1	SLC6A3	0.634	1
IDH1	ZMIZ1	0.634	1
IDH2	Amp_7p11.2	0.634	1
KRT3	1p-Del	0.634	1
PLXNA3	8q-Amp	0.634	1
PLXNA3	Amp_19p13.3	0.634	1
PTPN11	Amp_12p13.32	0.634	1
RBPJ	Amp_12p13.32	0.634	1
RET	Amp_12p13.32	0.634	1
SLC6A3	8q-Amp	0.634	1
SLC6A3	Amp_19p13.3	0.634	1
TCF12	Del_2q37.3	0.634	1
TNRC18	8q-Amp	0.634	1
ZMIZ1	Amp_19p13.3	0.634	1
ZNF709	1p-Del	0.634	1
7p-Amp	18q-Del	0.634	1
8q-Amp	Xp-Del	0.634	1
11p-Del	Amp_1q32.1	0.634	1
15q-Del	Del_2q37.3	0.634	1
Xp-Del	Amp_19p13.3	0.634	1
Amp_12p13.32	Del_1q43	0.634	1
SMARCA4	7q-Amp	0.635	1
SMARCA4	Amp_7p11.2	0.635	1
10p-Amp	7q-Amp	0.635	1
10p-Amp	Amp_7p11.2	0.635	1
7q-Amp	18q-Del	0.635	1
18q-Del	Amp_7p11.2	0.635	1
AGBL1	PIK3CA	0.636	1
HTRA2	PIK3CA	0.636	1
PIK3CA	ROBO3	0.636	1
TP53	Amp_12q14.1	0.636	1
11q-Amp	12q-Del	0.636	1
12q-Del	Del_8q24.3	0.636	1
4q-Del	Del_6p25.3	0.636	1
SETD2	Del_11p15.5	0.637	1
CIB1	IDH1	0.638	1
CIB1	10p-Del	0.638	1
IDH1	KRT3	0.638	1
IDH1	NAP1L2	0.638	1
NAP1L2	10p-Del	0.638	1
NF1	13q-Del	0.638	1
NRAS	10p-Del	0.638	1
ZNF709	10p-Del	0.638	1
11q-Amp	14q-Del	0.638	1
Amp_1q32.1	Del_Xq21.1	0.64	1
Amp_8q24.13	Del_9p21.3	0.64	1
ARID2	Amp_17q25.1	0.641	1
ARID2	Del_3q29	0.641	1
IDH2	MYST4	0.641	1
IDH2	NUDT11	0.641	1
IDH2	Amp_13q34	0.641	1
IDH2	Del_7p22.3	0.641	1
MYST4	Amp_17q25.1	0.641	1
MYST4	Del_3q29	0.641	1
MYST4	Del_5q34	0.641	1
NUDT11	Amp_17q25.1	0.641	1
NUDT11	Del_5q34	0.641	1
PIK3R1	Amp_1q22	0.641	1
Amp_13q34	Amp_17q25.1	0.641	1
CIC	CUL4B	0.642	1
CIC	PDGFRA	0.642	1
BRAF	Del_2q37.3	0.643	1
DDX5	Del_2q37.3	0.643	1
KRAS	Amp_7q32.3	0.643	1
NEU2	Del_2q37.3	0.643	1
PPL	Amp_10p15.3	0.643	1
RB1	Amp_10p15.3	0.643	1
RBBP6	Amp_10p15.3	0.643	1
ROBO3	Del_2q37.3	0.643	1
SCN4A	Amp_10p15.3	0.643	1
TRERF1	Amp_10p15.3	0.643	1
13q-Del	Del_6p25.3	0.643	1
NOTCH1	9q-Del	0.646	1
PIK3CA	7q-Amp	0.646	1
PLXNA3	Amp_12q14.1	0.646	1
PLXNA3	Del_3p21.31	0.646	1
PLXNA3	Del_5p15.33	0.646	1
SLC6A3	Amp_12q14.1	0.646	1
SLC6A3	Del_5p15.33	0.646	1
TNRC18	Amp_12q14.1	0.646	1
TNRC18	Del_3p21.31	0.646	1
ZMIZ1	Amp_12q14.1	0.646	1
ZMIZ1	Del_3p21.31	0.646	1
ARID2	10q-Del	0.647	1
FAM47C	19p-Amp	0.647	1
FAM47C	Amp_3q26.33	0.647	1
FAM47C	Amp_Xp11.22	0.647	1
MYST4	10q-Del	0.647	1
NIPBL	Amp_3q26.33	0.647	1
NIPBL	Amp_Xp11.22	0.647	1
Amp_19p13.2	Amp_Xp11.22	0.647	1
ARID1A	6q-Del	0.648	1
GAGE2A	Amp_7p11.2	0.648	1
11p-Del	9p-Del	0.648	1
AGBL1	Del_19q13.41	0.649	1
DDX5	Del_19q13.41	0.649	1
HTRA2	Del_19q13.41	0.649	1
NEU2	Del_19q13.41	0.649	1
AGBL1	NOTCH1	0.65	1
HTRA2	NOTCH1	0.65	1
Del_8q24.3	Del_22q13.31	0.65	1
Del_11p15.1	Del_Xq21.1	0.65	1
EGFR	EMG1	0.651	1
PTEN	10p-Amp	0.651	1
SLC6A3	Del_1p36.32	0.651	1
SMARCA4	Amp_12q14.1	0.651	1
10p-Amp	Amp_12q14.1	0.651	1
18q-Del	Amp_12q14.1	0.651	1
ARID1A	Del_4q34.3	0.652	1
Del_3q13.31	Del_14q24.3	0.652	1
Del_11p15.5	Del_14q24.3	0.652	1
Amp_17q25.1	Del_14q24.3	0.653	1
Del_5q34	Del_14q24.3	0.653	1
CUL4B	4p-Del	0.654	1
DNMT3A	4p-Del	0.654	1
PDGFRA	4p-Del	0.654	1
PRX	4p-Del	0.654	1
SETD2	4p-Del	0.654	1
STK19	4p-Del	0.654	1
ZBTB20	Amp_1q22	0.654	1
4p-Del	Amp_1q22	0.654	1
ARID2	Del_4q34.3	0.655	1
MYST4	Del_4q34.3	0.655	1
TCF12	12q-Del	0.655	1
TCF12	Del_3q13.31	0.655	1
7q-Amp	Del_4q34.3	0.655	1
12q-Del	9q-Del	0.655	1
15q-Del	Del_3q13.31	0.655	1
Amp_13q34	Del_4q34.3	0.655	1
Del_4q34.3	Del_7p22.3	0.655	1
ARID1A	Amp_13q34	0.656	1
GAGE2A	SMARCA4	0.656	1
GAGE2A	10p-Amp	0.656	1
GAGE2A	18q-Del	0.656	1
PIK3CA	Del_3q13.31	0.656	1
SLC6A3	Del_1p32.3	0.656	1
Amp_4q12	Del_7p22.3	0.656	1
ARID2	Del_10q26.3	0.657	1
PIK3R1	Amp_11q24.1	0.657	1
PIK3R1	Del_11p15.1	0.657	1
SMARCA4	Del_14q24.3	0.657	1
11q-Amp	Del_Xq21.1	0.657	1
Xp-Del	Del_19q13.42	0.657	1
DNMT3A	TP53	0.658	1
PDGFRA	TP53	0.658	1
PLXNA3	Del_6p25.3	0.658	1
SLC6A3	Del_6p25.3	0.658	1
TNRC18	Del_6p25.3	0.658	1
KRAS	Del_10q26.3	0.659	1
ATRX	Amp_17q25.1	0.66	1
EMG1	Amp_7q32.3	0.66	1
GAGE2A	Del_14q24.3	0.66	1
PPL	Amp_7q32.3	0.66	1
SCN4A	Amp_7q32.3	0.66	1
TRERF1	Amp_7q32.3	0.66	1
Del_9p21.3	Del_Xq21.1	0.66	1
CIB1	Del_6q24.3	0.661	1
KRT3	Del_6q24.3	0.661	1
NAP1L2	Del_6q24.3	0.661	1
NRAS	Del_6q24.3	0.661	1
ZNF709	Del_6q24.3	0.661	1
ARID1A	Amp_12p13.32	0.662	1
4p-Del	Del_9p21.3	0.663	1
Amp_1q32.1	Amp_Xp11.22	0.663	1
Amp_12p13.32	Del_14q24.3	0.663	1
ARID2	Amp_8q24.13	0.664	1
BRAF	14q-Del	0.664	1
DDX5	14q-Del	0.664	1
HTRA2	14q-Del	0.664	1
MED9	9p-Del	0.664	1
NEU2	14q-Del	0.664	1
PLXNA3	Del_9p21.3	0.664	1
ROBO3	14q-Del	0.664	1
SMOC1	9p-Del	0.664	1
TNRC18	Del_9p21.3	0.664	1
ZNF512B	14q-Del	0.664	1
Xp-Del	Del_9p21.3	0.664	1
SLC6A3	19q-Del	0.666	1
SMARCA4	14q-Del	0.666	1
11q-Amp	9p-Del	0.666	1
GAGE2A	8q-Amp	0.667	1
PDGFRA	7p-Amp	0.667	1
7p-Amp	Amp_1q22	0.667	1
8q-Amp	Del_9p21.3	0.667	1
CUL4B	IDH2	0.668	1
CUL4B	Del_3q29	0.668	1
CUL4B	Del_5q34	0.668	1
DNMT3A	Amp_17q25.1	0.668	1
DNMT3A	Del_3q29	0.668	1
DNMT3A	Del_5q34	0.668	1
EMG1	6q-Del	0.668	1
IDH2	PDGFRA	0.668	1
IDH2	PRX	0.668	1
IDH2	SETD2	0.668	1
IDH2	Amp_1q22	0.668	1
KRAS	Amp_7q31.2	0.668	1
MED9	Del_11p15.5	0.668	1
MYT1	6q-Del	0.668	1
NF1	Xq-Del	0.668	1
PDGFRA	Amp_17q25.1	0.668	1
PPL	6q-Del	0.668	1
PRX	Amp_17q25.1	0.668	1
PRX	Del_5q34	0.668	1
RBBP6	6q-Del	0.668	1
SETD2	Amp_17q25.1	0.668	1
SETD2	Del_3q29	0.668	1
SMOC1	Del_11p15.5	0.668	1
STK19	Del_3q29	0.668	1
STK19	Del_5q34	0.668	1
TCF12	14q-Del	0.668	1
TMEM216	Del_11p15.5	0.668	1
TRERF1	6q-Del	0.668	1
8q-Amp	Amp_12q14.1	0.668	1
Amp_1q22	Amp_17q25.1	0.668	1
Amp_1q22	Del_5q34	0.668	1
Amp_Xp11.22	Del_6q24.3	0.668	1
SMARCA4	Amp_7q31.2	0.669	1
PIK3R1	Xp-Del	0.67	1
PIK3R1	Del_6q22.31	0.67	1
AGBL1	Del_18q23	0.671	1
ARID2	Amp_19p13.2	0.671	1
BRAF	Del_18q23	0.671	1
DDX5	Del_18q23	0.671	1
FAM47C	Amp_13q34	0.671	1
FAM47C	Del_7p22.3	0.671	1
HTRA2	Del_18q23	0.671	1
MYST4	Amp_19p13.2	0.671	1
NEU2	Del_18q23	0.671	1
NEU2	Del_22q13.31	0.671	1
NIPBL	Del_7p22.3	0.671	1
NUDT11	Amp_19p13.2	0.671	1
ROBO3	Del_22q13.31	0.671	1
ZNF512B	Del_18q23	0.671	1
ZNF512B	Del_22q13.31	0.671	1
Amp_19p13.2	Del_7p22.3	0.671	1
Del_2q37.3	Del_5p15.33	0.671	1
ANKRD36	18p-Del	0.672	1
ANKRD36	4q-Del	0.672	1
ANKRD36	Amp_11q24.1	0.672	1
ARID2	10p-Del	0.672	1
CREBZF	Amp_11q24.1	0.672	1
IRS4	4q-Del	0.672	1
IRS4	Amp_11q24.1	0.672	1
MYST4	10p-Del	0.672	1
NUDT11	Del_19q13.42	0.672	1
PTPN11	18p-Del	0.672	1
PTPN11	4q-Del	0.672	1
PTPN11	Amp_11q24.1	0.672	1
RBPJ	Amp_11q24.1	0.672	1
RET	Amp_11q24.1	0.672	1
7q-Amp	Amp_4q12	0.672	1
18p-Del	Amp_2p24.3	0.672	1
18p-Del	Del_1q43	0.672	1
4q-Del	Amp_2p24.3	0.672	1
4q-Del	Del_1q43	0.672	1
NAP1L2	Del_11p15.1	0.673	1
PIK3R1	Del_12q12	0.673	1
ATRX	MED9	0.674	1
Del_6q24.3	Del_11p15.1	0.674	1
PTPN11	Del_9p23	0.675	1
RET	Del_9p23	0.675	1
TCF12	Del_Xq21.1	0.675	1
15q-Del	Del_Xq21.1	0.675	1
Del_1q43	Del_9p23	0.675	1
ARID2	Amp_7q31.2	0.676	1
NUDT11	Amp_7q31.2	0.676	1
EMG1	Amp_12p13.32	0.677	1
PPL	Amp_12p13.32	0.677	1
RB1	Amp_12p13.32	0.677	1
RBBP6	Amp_12p13.32	0.677	1
SCN4A	Amp_12p13.32	0.677	1
TRERF1	Amp_12p13.32	0.677	1
ZBTB20	Amp_11q24.1	0.677	1
4p-Del	Amp_11q24.1	0.677	1
Xq-Del	Amp_12p13.32	0.677	1
ATRX	DNMT3A	0.678	1
ATRX	Amp_1q22	0.678	1
BRAF	11p-Del	0.678	1
CIB1	FUBP1	0.678	1
CIB1	13q-Del	0.678	1
CIB1	Del_6q22.31	0.678	1
DDX5	11p-Del	0.678	1
GAGE2A	PTEN	0.678	1
GAGE2A	Amp_12q14.1	0.678	1
GAGE2A	Del_3p21.31	0.678	1
GAGE2A	Del_5p15.33	0.678	1
KRT3	13q-Del	0.678	1
KRT3	Del_6q22.31	0.678	1
NAP1L2	13q-Del	0.678	1
NAP1L2	Del_6q22.31	0.678	1
NEU2	11p-Del	0.678	1
NRAS	Del_6q22.31	0.678	1
PLXNA3	9p-Del	0.678	1
PLXNA3	Del_13q14.2	0.678	1
ROBO3	11p-Del	0.678	1
SRPX	13q-Del	0.678	1
TNRC18	9p-Del	0.678	1
ZNF512B	11p-Del	0.678	1
ZNF709	13q-Del	0.678	1
ZNF709	Del_6q22.31	0.678	1
Xp-Del	Del_13q14.2	0.678	1
Del_6q24.3	Del_19q13.41	0.678	1
TCF12	Del_18q23	0.679	1
TCF12	Del_22q13.31	0.679	1
11q-Amp	19p-Amp	0.679	1
11q-Amp	Amp_3q26.33	0.679	1
19p-Amp	Del_8q24.3	0.679	1
15q-Del	Del_22q13.31	0.679	1
Amp_Xp11.22	Del_8q24.3	0.679	1
DDX5	Del_9p21.3	0.68	1
ROBO3	Del_9p21.3	0.68	1
ZNF512B	Del_9p21.3	0.68	1
6q-Del	Amp_7q32.3	0.68	1
PPL	Del_1p36.32	0.681	1
RB1	Del_1p36.32	0.681	1
18q-Del	Del_22q13.31	0.681	1
22q-Del	Del_18q23	0.681	1
ANKRD36	Del_12q12	0.682	1
ARID1A	Amp_1q22	0.682	1
CREBZF	Del_12q12	0.682	1
CUL4B	Amp_4q12	0.682	1
DNMT3A	Amp_4q12	0.682	1
IRS4	Del_12q12	0.682	1
PTPN11	Del_12q12	0.682	1
RBPJ	Del_12q12	0.682	1
RET	Del_12q12	0.682	1
STK19	Amp_4q12	0.682	1
Amp_1q22	Amp_4q12	0.682	1
Del_1q43	Del_12q12	0.682	1
EMG1	TP53	0.683	1
PLXNA3	4p-Del	0.683	1
SCN4A	TP53	0.683	1
SLC6A3	4p-Del	0.683	1
ZMIZ1	4p-Del	0.683	1
4p-Del	Xp-Del	0.683	1
DNMT3A	Amp_7q32.3	0.684	1
EMG1	Del_10q26.3	0.684	1
NOTCH1	PTEN	0.684	1
NOTCH1	Del_3p21.31	0.684	1
PPL	Del_10q26.3	0.684	1
RBBP6	Del_10q26.3	0.684	1
SETD2	Amp_7q32.3	0.684	1
4p-Del	Del_11p15.1	0.684	1
Amp_10p15.3	Amp_11q24.1	0.684	1
PPL	Del_1p32.3	0.685	1
SLC6A3	Del_11p15.5	0.685	1
ZMIZ1	Del_11p15.5	0.685	1
ARID2	Amp_1q32.1	0.686	1
MED9	7p-Amp	0.686	1
MYST4	Amp_1q32.1	0.686	1
NUDT11	Amp_1q32.1	0.686	1
PTEN	Amp_12q14.1	0.686	1
PTEN	Del_3p21.31	0.686	1
PTEN	Del_5p15.33	0.686	1
SMOC1	7p-Amp	0.686	1
11q-Amp	Amp_10p15.3	0.686	1
Amp_1q32.1	Del_7p22.3	0.686	1
Amp_12q14.1	Del_3p21.31	0.686	1
Del_4q34.3	Del_14q24.3	0.687	1
11p-Del	Del_6q24.3	0.688	1
IDH1	Amp_17q25.1	0.689	1
IDH1	Del_3q29	0.689	1
PIK3R1	SMARCA4	0.689	1
PIK3R1	22q-Del	0.689	1
Amp_17q25.1	Del_6q24.3	0.689	1
PDGFRA	10q-Del	0.69	1
SETD2	10q-Del	0.69	1
10q-Del	Amp_1q22	0.69	1
TCF12	11p-Del	0.691	1
11p-Del	9q-Del	0.691	1
AGBL1	Amp_10p15.3	0.692	1
ANKRD36	18q-Del	0.692	1
BRAF	Amp_10p15.3	0.692	1
CREBZF	SMARCA4	0.692	1
CREBZF	10p-Amp	0.692	1
CREBZF	22q-Del	0.692	1
HTRA2	Amp_10p15.3	0.692	1
IRS4	10p-Amp	0.692	1
NEU2	Amp_10p15.3	0.692	1
NOTCH1	Del_4q34.3	0.692	1
PTPN11	SMARCA4	0.692	1
PTPN11	10p-Amp	0.692	1
PTPN11	18q-Del	0.692	1
RBPJ	SMARCA4	0.692	1
RBPJ	22q-Del	0.692	1
RET	10p-Amp	0.692	1
SMARCA4	Amp_2p24.3	0.692	1
ZNF512B	Amp_10p15.3	0.692	1
10p-Amp	Amp_2p24.3	0.692	1
10p-Amp	Del_1q43	0.692	1
18q-Del	Amp_2p24.3	0.692	1
18q-Del	Del_1q43	0.692	1
22q-Del	Amp_2p24.3	0.692	1
22q-Del	Del_1q43	0.692	1
12q-Del	Del_Xq21.1	0.693	1
4p-Del	Del_12q12	0.693	1
CIB1	PIK3CA	0.696	1
DNMT3A	Amp_19p13.2	0.696	1
FAM47C	Amp_1q22	0.696	1
IDH2	PLXNA3	0.696	1
IDH2	SLC6A3	0.696	1
IDH2	ZMIZ1	0.696	1
IDH2	Xp-Del	0.696	1
KRT3	PIK3CA	0.696	1
NAP1L2	PIK3CA	0.696	1
NIPBL	Amp_1q22	0.696	1
NRAS	PIK3CA	0.696	1
PDGFRA	Amp_19p13.2	0.696	1
PIK3R1	9p-Del	0.696	1
PLXNA3	Amp_17q25.1	0.696	1
PLXNA3	Del_3q29	0.696	1
PLXNA3	Del_5q34	0.696	1
SETD2	Amp_19p13.2	0.696	1
SLC6A3	Amp_17q25.1	0.696	1
SLC6A3	Del_3q29	0.696	1
SLC6A3	Del_5q34	0.696	1
TCF12	19p-Amp	0.696	1
TCF12	Amp_3q26.33	0.696	1
TCF12	Amp_Xp11.22	0.696	1
TNRC18	Amp_17q25.1	0.696	1
TNRC18	Del_3q29	0.696	1
TP53	Del_22q13.31	0.696	1
ZMIZ1	Amp_17q25.1	0.696	1
ZMIZ1	Del_3q29	0.696	1
ZMIZ1	Del_5q34	0.696	1
7q-Amp	Amp_10p15.3	0.696	1
15q-Del	Amp_Xp11.22	0.696	1
9q-Del	Amp_3q26.33	0.696	1
9q-Del	Amp_Xp11.22	0.696	1
Xp-Del	Amp_17q25.1	0.696	1
Xp-Del	Del_5q34	0.696	1
FUBP1	14q-Del	0.697	1
KRAS	Del_9p23	0.697	1
NOTCH1	7q-Amp	0.697	1
PRX	Del_4q34.3	0.698	1
12q-Del	14q-Del	0.698	1
6q-Del	Amp_1q32.1	0.698	1
EMG1	Amp_7q31.2	0.699	1
PPL	Amp_7q31.2	0.699	1
RBBP6	Amp_7q31.2	0.699	1
SCN4A	Amp_7q31.2	0.699	1
TP53	Amp_7q31.2	0.699	1
4q-Del	Amp_17q25.1	0.699	1
Amp_11q24.1	Del_5q34	0.699	1
Del_2q37.3	Del_14q24.3	0.699	1
EGFR	HTRA2	0.7	1
EGFR	NEU2	0.7	1
EGFR	ROBO3	0.7	1
EGFR	18p-Del	0.7	1
SMOC1	10q-Del	0.7	1
TMEM216	10q-Del	0.7	1
ANKRD36	Amp_19p13.3	0.702	1
ARID2	11q-Amp	0.702	1
ARID2	Del_8q24.3	0.702	1
CIB1	Del_2q37.3	0.702	1
CIC	Del_18q23	0.702	1
CREBZF	Amp_19p13.3	0.702	1
IRS4	8q-Amp	0.702	1
IRS4	Amp_19p13.3	0.702	1
MYST4	Del_8q24.3	0.702	1
NAP1L2	Del_2q37.3	0.702	1
NRAS	Del_2q37.3	0.702	1
NUDT11	11q-Amp	0.702	1
NUDT11	Del_8q24.3	0.702	1
PTPN11	8q-Amp	0.702	1
PTPN11	Amp_19p13.3	0.702	1
RBPJ	8q-Amp	0.702	1
RBPJ	Amp_19p13.3	0.702	1
RET	8q-Amp	0.702	1
RET	Amp_19p13.3	0.702	1
SRPX	Del_2q37.3	0.702	1
8q-Amp	Del_1q43	0.702	1
Amp_2p24.3	Amp_19p13.3	0.702	1
Amp_13q34	Del_8q24.3	0.702	1
8q-Amp	Del_18q23	0.703	1
8q-Amp	Del_22q13.31	0.703	1
Amp_19p13.3	Del_18q23	0.703	1
TCF12	Del_13q14.2	0.704	1
MED9	Del_4q34.3	0.705	1
SMOC1	Del_4q34.3	0.705	1
Amp_12q14.1	Del_6p25.3	0.705	1
PIK3R1	Amp_19p13.3	0.706	1
PRX	Amp_8q24.13	0.706	1
STK19	Amp_8q24.13	0.706	1
Amp_1q22	Amp_8q24.13	0.706	1
Amp_13q34	Del_6q24.3	0.706	1
PIK3R1	Del_11p15.5	0.707	1
Amp_19p13.3	Del_1p32.3	0.707	1
CIB1	NOTCH1	0.708	1
CIC	TNRC18	0.708	1
KRT3	NOTCH1	0.708	1
NOTCH1	Del_6p25.3	0.708	1
SLC6A3	1p-Del	0.708	1
Amp_10p15.3	Del_18q23	0.708	1
ANKRD36	7q-Amp	0.709	1
ANKRD36	Amp_7p11.2	0.709	1
FAM47C	Amp_7p11.2	0.709	1
IRS4	Amp_7p11.2	0.709	1
KRT3	TP53	0.709	1
NAP1L2	TP53	0.709	1
NF1	Del_9p23	0.709	1
NIPBL	7q-Amp	0.709	1
NIPBL	Amp_7p11.2	0.709	1
NOTCH1	Del_Xq21.1	0.709	1
PLXNA3	Amp_4q12	0.709	1
RET	7q-Amp	0.709	1
TNRC18	Amp_4q12	0.709	1
TP53	ZNF709	0.709	1
ZMIZ1	Amp_4q12	0.709	1
10p-Amp	4p-Del	0.709	1
22q-Del	4p-Del	0.709	1
Xp-Del	Amp_4q12	0.709	1
Amp_2p24.3	Amp_7p11.2	0.709	1
Amp_7p11.2	Del_1q43	0.709	1
Amp_11q24.1	Del_9p21.3	0.709	1
Del_3q13.31	Del_18q23	0.709	1
DNMT3A	Amp_1q32.1	0.71	1
MED9	Amp_8q24.13	0.71	1
NUDT11	Del_19q13.41	0.71	1
PDGFRA	Amp_1q32.1	0.71	1
STK19	Amp_1q32.1	0.71	1
EMG1	18p-Del	0.711	1
EMG1	4q-Del	0.711	1
MYT1	18p-Del	0.711	1
MYT1	Amp_11q24.1	0.711	1
PPL	18p-Del	0.711	1
PPL	4q-Del	0.711	1
RB1	4q-Del	0.711	1
RB1	Amp_11q24.1	0.711	1
RBBP6	18p-Del	0.711	1
RBBP6	Amp_11q24.1	0.711	1
SCN4A	18p-Del	0.711	1
SCN4A	4q-Del	0.711	1
SCN4A	Amp_11q24.1	0.711	1
TRERF1	18p-Del	0.711	1
TRERF1	4q-Del	0.711	1
TRERF1	Amp_11q24.1	0.711	1
14q-Del	Amp_12q14.1	0.711	1
14q-Del	Del_3p21.31	0.711	1
14q-Del	Del_5p15.33	0.711	1
4q-Del	Xq-Del	0.711	1
Amp_1q32.1	Amp_12p13.32	0.711	1
Del_6q22.31	Del_19q13.41	0.711	1
ANKRD36	Amp_12q14.1	0.712	1
CREBZF	PTEN	0.712	1
CREBZF	Amp_12q14.1	0.712	1
CREBZF	Del_5p15.33	0.712	1
IRS4	Amp_12q14.1	0.712	1
PIK3R1	Del_9p23	0.712	1
PTEN	RBPJ	0.712	1
PTEN	Amp_2p24.3	0.712	1
PTEN	Del_1q43	0.712	1
PTPN11	Del_3p21.31	0.712	1
PTPN11	Del_5p15.33	0.712	1
RBPJ	Amp_12q14.1	0.712	1
RBPJ	Del_3p21.31	0.712	1
RBPJ	Del_5p15.33	0.712	1
RET	Amp_12q14.1	0.712	1
RET	Del_3p21.31	0.712	1
RET	Del_5p15.33	0.712	1
TCF12	Del_11p15.5	0.712	1
11q-Amp	7p-Amp	0.712	1
9q-Del	Del_11p15.5	0.712	1
Amp_2p24.3	Amp_12q14.1	0.712	1
Amp_2p24.3	Del_3p21.31	0.712	1
Amp_17q25.1	Del_11p15.1	0.712	1
Del_1q43	Del_3p21.31	0.712	1
AGBL1	CIC	0.713	1
ATRX	HTRA2	0.713	1
ATRX	NEU2	0.713	1
ATRX	ROBO3	0.713	1
BRAF	CIC	0.713	1
CIC	DDX5	0.713	1
CIC	HTRA2	0.713	1
CIC	ROBO3	0.713	1
GAGE2A	4p-Del	0.713	1
PDGFRA	10p-Del	0.713	1
SETD2	10p-Del	0.713	1
SLC6A3	7p-Amp	0.713	1
19p-Amp	12q-Del	0.713	1
19p-Amp	Del_3q13.31	0.713	1
10p-Del	Amp_1q22	0.713	1
Amp_3q26.33	Del_3q13.31	0.713	1
Amp_Xp11.22	Del_3q13.31	0.713	1
SETD2	Del_10q26.3	0.714	1
SMOC1	10p-Del	0.714	1
STK19	Del_10q26.3	0.714	1
TCF12	Amp_10p15.3	0.714	1
TMEM216	10p-Del	0.714	1
9q-Del	Amp_10p15.3	0.714	1
Amp_17q25.1	Del_12q12	0.714	1
AGBL1	NF1	0.715	1
AGBL1	6q-Del	0.715	1
BRAF	6q-Del	0.715	1
DDX5	6q-Del	0.715	1
HTRA2	NF1	0.715	1
NEU2	NF1	0.715	1
NEU2	6q-Del	0.715	1
NF1	ROBO3	0.715	1
ZNF512B	6q-Del	0.715	1
13q-Del	Del_18q23	0.716	1
Del_6q22.31	Del_18q23	0.716	1
KRAS	7q-Amp	0.717	1
KRAS	Amp_7p11.2	0.717	1
11p-Del	Amp_19p13.3	0.717	1
Amp_4q12	Del_6q24.3	0.717	1
ARID2	TCF12	0.718	1
ARID2	15q-Del	0.718	1
MYST4	15q-Del	0.718	1
MYST4	9q-Del	0.718	1
NUDT11	TCF12	0.718	1
NUDT11	15q-Del	0.718	1
NUDT11	9q-Del	0.718	1
NUDT11	Del_1p32.3	0.718	1
TCF12	Amp_13q34	0.718	1
TCF12	Del_7p22.3	0.718	1
15q-Del	Del_7p22.3	0.718	1
9q-Del	Amp_13q34	0.718	1
DDX5	IDH1	0.719	1
IDH1	ZNF512B	0.719	1
PIK3R1	Del_2q37.3	0.719	1
PPL	Del_12q12	0.72	1
RB1	Del_12q12	0.72	1
RBBP6	Del_12q12	0.72	1
SCN4A	Del_12q12	0.72	1
TRERF1	Del_12q12	0.72	1
18p-Del	Amp_4q12	0.72	1
Xq-Del	Del_12q12	0.72	1
Amp_2p24.3	Del_14q24.3	0.72	1
CIB1	14q-Del	0.721	1
CIC	Del_4q34.3	0.721	1
KRT3	14q-Del	0.721	1
NAP1L2	14q-Del	0.721	1
NRAS	14q-Del	0.721	1
SRPX	14q-Del	0.721	1
ZNF709	14q-Del	0.721	1
13q-Del	Amp_7p11.2	0.721	1
Del_5p15.33	Del_14q24.3	0.721	1
BRAF	Amp_12p13.32	0.722	1
FAM47C	Xp-Del	0.722	1
HTRA2	Amp_12p13.32	0.722	1
NIPBL	Xp-Del	0.722	1
ROBO3	Amp_12p13.32	0.722	1
SLC6A3	Amp_19p13.2	0.722	1
19q-Del	Amp_19p13.3	0.722	1
Xp-Del	Amp_19p13.2	0.722	1
ANKRD36	Del_6p25.3	0.723	1
CREBZF	Del_6p25.3	0.723	1
FUBP1	Amp_17q25.1	0.723	1
MYST4	Del_11p15.1	0.723	1
PIK3CA	19p-Amp	0.723	1
PIK3CA	Amp_3q26.33	0.723	1
PIK3R1	PTEN	0.723	1
PIK3R1	Del_3p21.31	0.723	1
PTPN11	Del_6p25.3	0.723	1
RET	Del_6p25.3	0.723	1
Del_1q43	Del_6p25.3	0.723	1
Del_3q29	Del_6q22.31	0.723	1
Del_7p22.3	Del_11p15.1	0.723	1
GAGE2A	Amp_17q25.1	0.724	1
GAGE2A	Del_3q29	0.724	1
KRAS	Del_14q24.3	0.724	1
CIC	13q-Del	0.725	1
CUL4B	11q-Amp	0.725	1
CUL4B	Del_8q24.3	0.725	1
PDGFRA	11q-Amp	0.725	1
PRX	11q-Amp	0.725	1
SETD2	11q-Amp	0.725	1
SETD2	Del_8q24.3	0.725	1
STK19	11q-Amp	0.725	1
STK19	Del_8q24.3	0.725	1
ZBTB20	8q-Amp	0.725	1
11q-Amp	Amp_1q22	0.725	1
10q-Del	Del_5p15.33	0.725	1
4p-Del	Amp_19p13.3	0.725	1
Amp_12q14.1	Del_18q23	0.725	1
Del_3p21.31	Del_18q23	0.725	1
Del_5p15.33	Del_18q23	0.725	1
EGFR	Del_18q23	0.726	1
FAM47C	Amp_7q32.3	0.726	1
NIPBL	Amp_7q32.3	0.726	1
CIB1	Del_18q23	0.727	1
KRT3	Del_22q13.31	0.727	1
NAP1L2	Del_22q13.31	0.727	1
NRAS	Del_18q23	0.727	1
NUDT11	19q-Del	0.727	1
PPL	1p-Del	0.727	1
SRPX	Del_18q23	0.727	1
SRPX	Del_22q13.31	0.727	1
ZNF709	Del_18q23	0.727	1
ZNF709	Del_22q13.31	0.727	1
13q-Del	Del_1p36.32	0.727	1
Del_6q22.31	Del_11p15.1	0.727	1
CIC	ZBTB20	0.728	1
EMG1	SMARCA4	0.729	1
EMG1	18q-Del	0.729	1
EMG1	22q-Del	0.729	1
GAGE2A	9p-Del	0.729	1
MYT1	18q-Del	0.729	1
MYT1	22q-Del	0.729	1
PPL	10p-Amp	0.729	1
PPL	18q-Del	0.729	1
PPL	22q-Del	0.729	1
RB1	10p-Amp	0.729	1
RBBP6	10p-Amp	0.729	1
RBBP6	18q-Del	0.729	1
RBBP6	22q-Del	0.729	1
SCN4A	10p-Amp	0.729	1
SCN4A	18q-Del	0.729	1
SCN4A	22q-Del	0.729	1
SMARCA4	Xq-Del	0.729	1
SMARCA4	Del_3q29	0.729	1
SMARCA4	Del_5q34	0.729	1
TRERF1	10p-Amp	0.729	1
TRERF1	18q-Del	0.729	1
TRERF1	22q-Del	0.729	1
10p-Amp	Xq-Del	0.729	1
18q-Del	Xq-Del	0.729	1
Amp_10p15.3	Del_6q24.3	0.729	1
ARID2	13q-Del	0.731	1
DNMT3A	Amp_7q31.2	0.731	1
NF1	4q-Del	0.731	1
PRX	Amp_7q31.2	0.731	1
SETD2	Amp_7q31.2	0.731	1
19p-Amp	Del_Xq21.1	0.731	1
13q-Del	Amp_13q34	0.731	1
13q-Del	Del_7p22.3	0.731	1
18p-Del	6q-Del	0.731	1
6q-Del	Amp_11q24.1	0.731	1
Amp_13q34	Del_6q22.31	0.731	1
Amp_Xp11.22	Del_Xq21.1	0.731	1
Amp_3q26.33	Del_2q37.3	0.732	1
Amp_Xp11.22	Del_2q37.3	0.732	1
Del_1p32.3	Del_14q24.3	0.732	1
ANKRD36	PIK3R1	0.733	1
NAP1L2	11p-Del	0.733	1
NRAS	11p-Del	0.733	1
PIK3R1	PTPN11	0.733	1
PIK3R1	RBPJ	0.733	1
PIK3R1	Amp_2p24.3	0.733	1
PIK3R1	Del_1q43	0.733	1
TMEM216	Del_6q24.3	0.733	1
14q-Del	Del_4q34.3	0.733	1
Amp_11q24.1	Del_11p15.5	0.733	1
Del_6q24.3	Del_12q12	0.733	1
ARID2	12q-Del	0.734	1
ARID2	Del_3q13.31	0.734	1
MYST4	12q-Del	0.734	1
MYST4	Del_3q13.31	0.734	1
NUDT11	12q-Del	0.734	1
NUDT11	Del_3q13.31	0.734	1
PLXNA3	10q-Del	0.734	1
TNRC18	10q-Del	0.734	1
10q-Del	Xp-Del	0.734	1
12q-Del	Del_7p22.3	0.734	1
Amp_7q31.2	Del_18q23	0.734	1
Amp_13q34	Del_3q13.31	0.734	1
GAGE2A	Del_9p21.3	0.735	1
SLC6A3	Amp_1q32.1	0.735	1
ZMIZ1	Amp_1q32.1	0.735	1
11p-Del	Del_6q22.31	0.735	1
ARID1A	GAGE2A	0.736	1
GAGE2A	Amp_4q12	0.736	1
Amp_11q24.1	Del_11p15.1	0.736	1
4p-Del	Del_11p15.5	0.737	1
11q-Amp	Del_9p23	0.738	1
EGFR	18q-Del	0.739	1
EMG1	8q-Amp	0.739	1
MYT1	Amp_19p13.3	0.739	1
PIK3R1	Del_6p25.3	0.739	1
PPL	Amp_19p13.3	0.739	1
RB1	8q-Amp	0.739	1
RB1	Amp_19p13.3	0.739	1
RBBP6	8q-Amp	0.739	1
RBBP6	Amp_19p13.3	0.739	1
SCN4A	8q-Amp	0.739	1
SCN4A	Amp_19p13.3	0.739	1
TRERF1	8q-Amp	0.739	1
TRERF1	Amp_19p13.3	0.739	1
8q-Amp	Xq-Del	0.739	1
Xq-Del	Amp_19p13.3	0.739	1
Amp_7q31.2	Del_5p15.33	0.739	1
Del_18q23	Del_Xq21.1	0.739	1
Del_22q13.31	Del_Xq21.1	0.739	1
CUL4B	9q-Del	0.74	1
DNMT3A	TCF12	0.74	1
DNMT3A	15q-Del	0.74	1
DNMT3A	9q-Del	0.74	1
PDGFRA	TCF12	0.74	1
PDGFRA	15q-Del	0.74	1
PRX	TCF12	0.74	1
PRX	9q-Del	0.74	1
SETD2	TCF12	0.74	1
SETD2	15q-Del	0.74	1
SETD2	9q-Del	0.74	1
STK19	TCF12	0.74	1
STK19	15q-Del	0.74	1
STK19	9q-Del	0.74	1
TCF12	Amp_1q22	0.74	1
12q-Del	Del_10q26.3	0.74	1
15q-Del	Amp_1q22	0.74	1
FAM47C	4q-Del	0.741	1
NIPBL	4q-Del	0.741	1
PLXNA3	Del_4q34.3	0.741	1
PTEN	ZBTB20	0.741	1
PTEN	4p-Del	0.741	1
TMEM216	Del_1p36.32	0.741	1
TNRC18	Del_4q34.3	0.741	1
ZBTB20	Amp_12q14.1	0.741	1
12q-Del	Amp_10p15.3	0.741	1
18p-Del	Amp_19p13.2	0.741	1
Xp-Del	Del_4q34.3	0.741	1
Amp_11q24.1	Amp_19p13.2	0.741	1
AGBL1	Amp_7q32.3	0.742	1
BRAF	Amp_7q32.3	0.742	1
EMG1	Del_9p23	0.742	1
MYT1	Del_9p23	0.742	1
PPL	Del_9p23	0.742	1
RB1	Del_9p23	0.742	1
SCN4A	Del_9p23	0.742	1
TRERF1	Del_9p23	0.742	1
ZNF512B	Amp_7q32.3	0.742	1
GAGE2A	Del_1p36.32	0.743	1
MED9	Del_11p15.1	0.743	1
SMOC1	Del_11p15.1	0.743	1
TMEM216	Del_11p15.1	0.743	1
4p-Del	Del_2q37.3	0.743	1
ANKRD36	ZBTB20	0.744	1
ANKRD36	4p-Del	0.744	1
CREBZF	ZBTB20	0.744	1
CREBZF	4p-Del	0.744	1
CUL4B	Del_6q24.3	0.744	1
DNMT3A	Del_6q24.3	0.744	1
IDH2	Amp_19p13.3	0.744	1
IRS4	4p-Del	0.744	1
MED9	Del_1p32.3	0.744	1
PRX	Del_6q24.3	0.744	1
PTPN11	ZBTB20	0.744	1
PTPN11	4p-Del	0.744	1
SETD2	Del_6q24.3	0.744	1
TMEM216	Del_1p32.3	0.744	1
TNRC18	Amp_7q32.3	0.744	1
ZBTB20	Amp_2p24.3	0.744	1
ZBTB20	Del_1q43	0.744	1
13q-Del	Del_6q22.31	0.744	1
4p-Del	Amp_2p24.3	0.744	1
4p-Del	Del_1q43	0.744	1
Amp_19p13.3	Del_5q34	0.744	1
ATRX	RET	0.745	1
ATRX	Del_1q43	0.745	1
CIB1	Amp_10p15.3	0.745	1
IDH1	MYST4	0.745	1
NAP1L2	Amp_10p15.3	0.745	1
SRPX	Amp_10p15.3	0.745	1
Amp_10p15.3	Amp_19p13.3	0.745	1
7p-Amp	15q-Del	0.746	1
4p-Del	Del_9p23	0.746	1
9p-Del	Amp_8q24.13	0.746	1
Amp_4q12	Amp_7q31.2	0.746	1
GAGE2A	Del_1p32.3	0.747	1
PIK3R1	7p-Amp	0.747	1
Del_9p21.3	Del_18q23	0.747	1
EMG1	PTEN	0.748	1
EMG1	Amp_12q14.1	0.748	1
EMG1	Del_5p15.33	0.748	1
FUBP1	MED9	0.748	1
FUBP1	SMOC1	0.748	1
FUBP1	TMEM216	0.748	1
FUBP1	18p-Del	0.748	1
MYT1	Amp_12q14.1	0.748	1
PPL	Amp_12q14.1	0.748	1
PPL	Del_3p21.31	0.748	1
PPL	Del_5p15.33	0.748	1
RB1	Amp_12q14.1	0.748	1
RB1	Del_3p21.31	0.748	1
RB1	Del_5p15.33	0.748	1
RBBP6	Del_3p21.31	0.748	1
RBBP6	Del_5p15.33	0.748	1
SCN4A	Amp_12q14.1	0.748	1
SCN4A	Del_3p21.31	0.748	1
SCN4A	Del_5p15.33	0.748	1
SMOC1	13q-Del	0.748	1
TCF12	6q-Del	0.748	1
TNRC18	Amp_8q24.13	0.748	1
TRERF1	Amp_12q14.1	0.748	1
TRERF1	Del_3p21.31	0.748	1
TRERF1	Del_5p15.33	0.748	1
ZMIZ1	Amp_8q24.13	0.748	1
11p-Del	Del_Xq21.1	0.748	1
13q-Del	18p-Del	0.748	1
18p-Del	Del_6q22.31	0.748	1
6q-Del	9q-Del	0.748	1
FAM47C	GAGE2A	0.749	1
GAGE2A	NIPBL	0.749	1
GAGE2A	Amp_19p13.2	0.749	1
MED9	19q-Del	0.749	1
SLC6A3	11q-Amp	0.749	1
TMEM216	19q-Del	0.749	1
TNRC18	11q-Amp	0.749	1
TNRC18	Del_8q24.3	0.749	1
ZMIZ1	11q-Amp	0.749	1
11q-Amp	Xp-Del	0.749	1
19p-Amp	Amp_Xp11.22	0.749	1
Amp_3q26.33	Amp_Xp11.22	0.749	1
6q-Del	Del_12q12	0.75	1
ARID2	Del_Xq21.1	0.751	1
MYST4	Del_Xq21.1	0.751	1
NUDT11	Del_Xq21.1	0.751	1
CIB1	EGFR	0.752	1
EGFR	KRT3	0.752	1
EGFR	NAP1L2	0.752	1
EGFR	NRAS	0.752	1
EGFR	ZNF709	0.752	1
AGBL1	18p-Del	0.753	1
AGBL1	4q-Del	0.753	1
AGBL1	Amp_11q24.1	0.753	1
BRAF	18p-Del	0.753	1
BRAF	4q-Del	0.753	1
BRAF	Amp_11q24.1	0.753	1
DDX5	Amp_11q24.1	0.753	1
HTRA2	18p-Del	0.753	1
HTRA2	Amp_11q24.1	0.753	1
NEU2	18p-Del	0.753	1
NEU2	4q-Del	0.753	1
NEU2	Amp_11q24.1	0.753	1
ROBO3	18p-Del	0.753	1
ROBO3	4q-Del	0.753	1
ZNF512B	18p-Del	0.753	1
ZNF512B	4q-Del	0.753	1
ZNF512B	Amp_11q24.1	0.753	1
Del_4q34.3	Del_22q13.31	0.753	1
ANKRD36	IDH2	0.754	1
ANKRD36	Del_3q29	0.754	1
ANKRD36	Del_5q34	0.754	1
CREBZF	IDH2	0.754	1
CREBZF	Amp_17q25.1	0.754	1
CREBZF	Del_3q29	0.754	1
CREBZF	Del_5q34	0.754	1
IDH2	IRS4	0.754	1
IDH2	PTPN11	0.754	1
IDH2	RET	0.754	1
IDH2	Amp_2p24.3	0.754	1
IDH2	Del_1q43	0.754	1
IRS4	Del_3q29	0.754	1
IRS4	Del_5q34	0.754	1
PTPN11	Amp_17q25.1	0.754	1
PTPN11	Del_5q34	0.754	1
RBPJ	Amp_17q25.1	0.754	1
RBPJ	Del_3q29	0.754	1
RET	Amp_17q25.1	0.754	1
RET	Del_3q29	0.754	1
RET	Del_5q34	0.754	1
Amp_2p24.3	Del_5q34	0.754	1
Amp_17q25.1	Del_1q43	0.754	1
Del_1q43	Del_3q29	0.754	1
Del_1q43	Del_5q34	0.754	1
CUL4B	12q-Del	0.755	1
CUL4B	Del_3q13.31	0.755	1
DNMT3A	12q-Del	0.755	1
DNMT3A	Del_3q13.31	0.755	1
GAGE2A	19q-Del	0.755	1
PLXNA3	10p-Del	0.755	1
PRX	12q-Del	0.755	1
PRX	Del_3q13.31	0.755	1
SETD2	12q-Del	0.755	1
SETD2	Del_3q13.31	0.755	1
STK19	12q-Del	0.755	1
STK19	Del_3q13.31	0.755	1
TNRC18	10p-Del	0.755	1
10p-Del	Xp-Del	0.755	1
12q-Del	Amp_1q22	0.755	1
Amp_1q22	Del_3q13.31	0.755	1
Amp_7p11.2	Amp_11q24.1	0.755	1
ARID2	PIK3CA	0.756	1
IDH2	PIK3CA	0.756	1
MYST4	PIK3CA	0.756	1
NUDT11	PIK3CA	0.756	1
PIK3CA	Amp_13q34	0.756	1
PIK3CA	Del_7p22.3	0.756	1
EMG1	Del_6p25.3	0.757	1
MYT1	Del_6p25.3	0.757	1
RB1	Del_6p25.3	0.757	1
RBBP6	Del_6p25.3	0.757	1
SCN4A	Del_6p25.3	0.757	1
TRERF1	Del_6p25.3	0.757	1
19q-Del	Del_14q24.3	0.757	1
Amp_17q25.1	Del_13q14.2	0.757	1
NUDT11	TP53	0.758	1
ATRX	6q-Del	0.759	1
DNMT3A	Del_11p15.1	0.759	1
IDH2	Amp_12q14.1	0.759	1
IDH2	Del_3p21.31	0.759	1
PRX	Del_11p15.1	0.759	1
PTEN	Del_3q29	0.759	1
PTEN	Del_5q34	0.759	1
SETD2	Del_11p15.1	0.759	1
14q-Del	Amp_Xp11.22	0.759	1
Amp_17q25.1	Del_3p21.31	0.759	1
Del_3p21.31	Del_5q34	0.759	1
GAGE2A	7p-Amp	0.76	1
22q-Del	Amp_7q32.3	0.76	1
AGBL1	Del_12q12	0.761	1
BRAF	Del_12q12	0.761	1
DDX5	Del_12q12	0.761	1
GAGE2A	Amp_1q32.1	0.761	1
KRAS	9p-Del	0.761	1
KRAS	Del_13q14.2	0.761	1
NEU2	Del_12q12	0.761	1
NF1	Del_18q23	0.761	1
ROBO3	Del_12q12	0.761	1
ZNF512B	Del_12q12	0.761	1
15q-Del	Del_9p21.3	0.761	1
6q-Del	Del_18q23	0.761	1
BRAF	Del_10q26.3	0.762	1
HTRA2	Del_10q26.3	0.762	1
MED9	PIK3CA	0.762	1
PIK3CA	SMOC1	0.762	1
PIK3CA	TMEM216	0.762	1
PIK3CA	Del_18q23	0.762	1
Amp_1q32.1	Del_14q24.3	0.762	1
ARID1A	Amp_19p13.3	0.763	1
PLXNA3	TCF12	0.763	1
PLXNA3	15q-Del	0.763	1
PLXNA3	9q-Del	0.763	1
SLC6A3	15q-Del	0.763	1
SLC6A3	9q-Del	0.763	1
TCF12	ZMIZ1	0.763	1
TNRC18	15q-Del	0.763	1
TNRC18	9q-Del	0.763	1
ZMIZ1	9q-Del	0.763	1
15q-Del	Xp-Del	0.763	1
IDH1	PIK3R1	0.764	1
KRAS	TP53	0.764	1
PTEN	Amp_10p15.3	0.764	1
Amp_10p15.3	Amp_12q14.1	0.764	1
ANKRD36	ARID1A	0.765	1
ANKRD36	Amp_4q12	0.765	1
ARID1A	CREBZF	0.765	1
ARID1A	PTPN11	0.765	1
ARID1A	Amp_2p24.3	0.765	1
ARID1A	Del_1q43	0.765	1
CIB1	NF1	0.765	1
CIB1	6q-Del	0.765	1
IRS4	Amp_4q12	0.765	1
KRAS	Del_11p15.5	0.765	1
KRT3	6q-Del	0.765	1
MYST4	Del_2q37.3	0.765	1
NAP1L2	NF1	0.765	1
NAP1L2	6q-Del	0.765	1
NF1	NRAS	0.765	1
NIPBL	Del_11p15.1	0.765	1
NRAS	6q-Del	0.765	1
PIK3R1	Amp_7p11.2	0.765	1
RET	Amp_4q12	0.765	1
SRPX	6q-Del	0.765	1
ZNF709	6q-Del	0.765	1
Amp_2p24.3	Amp_4q12	0.765	1
Amp_4q12	Del_1q43	0.765	1
ATRX	9p-Del	0.766	1
10p-Del	Del_8q24.3	0.766	1
18p-Del	Amp_7q31.2	0.766	1
CUL4B	13q-Del	0.767	1
CUL4B	Del_6q22.31	0.767	1
DNMT3A	Del_6q22.31	0.767	1
FUBP1	PDGFRA	0.767	1
FUBP1	STK19	0.767	1
FUBP1	Amp_1q22	0.767	1
MED9	Del_2q37.3	0.767	1
PDGFRA	13q-Del	0.767	1
PDGFRA	Del_6q22.31	0.767	1
PIK3R1	Xq-Del	0.767	1
PRX	13q-Del	0.767	1
PRX	Del_6q22.31	0.767	1
SMOC1	Del_2q37.3	0.767	1
STK19	13q-Del	0.767	1
TMEM216	Del_2q37.3	0.767	1
13q-Del	Amp_1q22	0.767	1
Amp_1q22	Del_6q22.31	0.767	1
ARID2	19p-Amp	0.768	1
ARID2	Amp_3q26.33	0.768	1
ARID2	Amp_Xp11.22	0.768	1
FAM47C	SMARCA4	0.768	1
MYST4	19p-Amp	0.768	1
MYST4	Amp_3q26.33	0.768	1
MYST4	Amp_Xp11.22	0.768	1
NF1	10p-Amp	0.768	1
NUDT11	19p-Amp	0.768	1
NUDT11	Amp_3q26.33	0.768	1
SMARCA4	Amp_19p13.2	0.768	1
19p-Amp	Del_7p22.3	0.768	1
18q-Del	6q-Del	0.768	1
18q-Del	Amp_19p13.2	0.768	1
Amp_3q26.33	Del_7p22.3	0.768	1
Amp_13q34	Amp_Xp11.22	0.768	1
Amp_Xp11.22	Del_7p22.3	0.768	1
Amp_Xp11.22	Del_22q13.31	0.768	1
AGBL1	SMARCA4	0.769	1
AGBL1	18q-Del	0.769	1
BRAF	10p-Amp	0.769	1
BRAF	18q-Del	0.769	1
BRAF	22q-Del	0.769	1
DDX5	10p-Amp	0.769	1
DDX5	18q-Del	0.769	1
FUBP1	Del_12q12	0.769	1
GAGE2A	Del_19q13.42	0.769	1
HTRA2	SMARCA4	0.769	1
HTRA2	10p-Amp	0.769	1
HTRA2	18q-Del	0.769	1
NEU2	10p-Amp	0.769	1
NEU2	18q-Del	0.769	1
NEU2	22q-Del	0.769	1
ROBO3	18q-Del	0.769	1
ROBO3	22q-Del	0.769	1
ZNF512B	10p-Amp	0.769	1
ZNF512B	18q-Del	0.769	1
ZNF512B	22q-Del	0.769	1
Del_6q22.31	Del_12q12	0.769	1
EMG1	7q-Amp	0.77	1
EMG1	Amp_7p11.2	0.77	1
EMG1	Del_19q13.42	0.77	1
NUDT11	1p-Del	0.77	1
PLXNA3	Del_10q26.3	0.77	1
PPL	7q-Amp	0.77	1
PPL	Amp_7p11.2	0.77	1
PPL	Del_19q13.42	0.77	1
RBBP6	7q-Amp	0.77	1
RBBP6	Amp_7p11.2	0.77	1
SCN4A	7q-Amp	0.77	1
SCN4A	Amp_7p11.2	0.77	1
TRERF1	7q-Amp	0.77	1
TRERF1	Amp_7p11.2	0.77	1
Xq-Del	Amp_7p11.2	0.77	1
Xq-Del	Del_19q13.42	0.77	1
ARID2	7q-Amp	0.771	1
ARID2	Amp_7p11.2	0.771	1
CIB1	Amp_12p13.32	0.771	1
CUL4B	Del_19q13.42	0.771	1
CUL4B	Del_Xq21.1	0.771	1
KRT3	Amp_12p13.32	0.771	1
NAP1L2	Amp_12p13.32	0.771	1
NUDT11	7q-Amp	0.771	1
PRX	Del_Xq21.1	0.771	1
SRPX	Amp_12p13.32	0.771	1
STK19	Del_Xq21.1	0.771	1
ZNF709	Amp_12p13.32	0.771	1
10q-Del	15q-Del	0.771	1
Amp_1q22	Del_Xq21.1	0.771	1
Amp_7p11.2	Del_7p22.3	0.771	1
Amp_10p15.3	Del_6q22.31	0.771	1
MED9	NOTCH1	0.772	1
MED9	1p-Del	0.772	1
NOTCH1	SMOC1	0.772	1
NOTCH1	TMEM216	0.772	1
TMEM216	1p-Del	0.772	1
Amp_8q24.13	Del_6p25.3	0.772	1
ARID2	NOTCH1	0.773	1
NF1	Del_3q13.31	0.773	1
12q-Del	6q-Del	0.773	1
18q-Del	Del_13q14.2	0.773	1
6q-Del	Del_3q13.31	0.773	1
AGBL1	Amp_7q31.2	0.774	1
BRAF	Amp_7q31.2	0.774	1
GAGE2A	11q-Amp	0.774	1
TNRC18	TP53	0.774	1
TP53	Amp_7q32.3	0.774	1
ZNF512B	Amp_7q31.2	0.774	1
Amp_17q25.1	Del_6p25.3	0.774	1
ARID2	Del_9p21.3	0.775	1
ATRX	Del_6p25.3	0.775	1
7p-Amp	4p-Del	0.775	1
Amp_1q32.1	Del_12q12	0.775	1
ANKRD36	FAM47C	0.776	1
ANKRD36	NIPBL	0.776	1
ANKRD36	Amp_19p13.2	0.776	1
CIB1	Del_9p21.3	0.776	1
CREBZF	FAM47C	0.776	1
CREBZF	NIPBL	0.776	1
CREBZF	Amp_19p13.2	0.776	1
EMG1	ZBTB20	0.776	1
EMG1	4p-Del	0.776	1
FAM47C	PTPN11	0.776	1
FAM47C	RBPJ	0.776	1
FAM47C	Amp_2p24.3	0.776	1
FAM47C	Del_1q43	0.776	1
IRS4	Amp_19p13.2	0.776	1
MYT1	4p-Del	0.776	1
NAP1L2	Del_9p21.3	0.776	1
NIPBL	PTPN11	0.776	1
NIPBL	RBPJ	0.776	1
NIPBL	Amp_2p24.3	0.776	1
NIPBL	Del_1q43	0.776	1
NRAS	Del_9p21.3	0.776	1
PPL	4p-Del	0.776	1
PTPN11	Amp_19p13.2	0.776	1
RB1	4p-Del	0.776	1
RBBP6	4p-Del	0.776	1
RBPJ	Amp_19p13.2	0.776	1
RET	Amp_19p13.2	0.776	1
SCN4A	4p-Del	0.776	1
SRPX	Del_9p21.3	0.776	1
TRERF1	4p-Del	0.776	1
ZBTB20	Xq-Del	0.776	1
4p-Del	Xq-Del	0.776	1
Amp_2p24.3	Amp_19p13.2	0.776	1
AGBL1	8q-Amp	0.777	1
ARID1A	PTEN	0.777	1
ARID1A	Del_5p15.33	0.777	1
BRAF	8q-Amp	0.777	1
BRAF	Amp_19p13.3	0.777	1
DDX5	8q-Amp	0.777	1
DDX5	Amp_19p13.3	0.777	1
EGFR	Del_3p21.31	0.777	1
EGFR	Del_5p15.33	0.777	1
HTRA2	Amp_19p13.3	0.777	1
NEU2	8q-Amp	0.777	1
PLXNA3	12q-Del	0.777	1
PLXNA3	Del_3q13.31	0.777	1
ROBO3	8q-Amp	0.777	1
ROBO3	Amp_19p13.3	0.777	1
SLC6A3	12q-Del	0.777	1
TNRC18	12q-Del	0.777	1
TNRC18	Del_3q13.31	0.777	1
ZMIZ1	12q-Del	0.777	1
ZMIZ1	Del_3q13.31	0.777	1
ZNF512B	8q-Amp	0.777	1
ZNF512B	Amp_19p13.3	0.777	1
11p-Del	Amp_3q26.33	0.777	1
12q-Del	Xp-Del	0.777	1
15q-Del	Del_9p23	0.777	1
Amp_4q12	Del_3p21.31	0.777	1
Del_13q14.2	Del_Xq21.1	0.777	1
CIC	18p-Del	0.778	1
GAGE2A	10q-Del	0.778	1
KRAS	7p-Amp	0.778	1
ZBTB20	14q-Del	0.778	1
Amp_12p13.32	Del_18q23	0.778	1
CIB1	Del_19q13.42	0.779	1
CREBZF	9p-Del	0.779	1
CREBZF	Del_13q14.2	0.779	1
IRS4	9p-Del	0.779	1
NAP1L2	Del_19q13.42	0.779	1
PTPN11	9p-Del	0.779	1
PTPN11	Del_13q14.2	0.779	1
SCN4A	Del_14q24.3	0.779	1
SRPX	Del_19q13.42	0.779	1
TCF12	Del_4q34.3	0.779	1
TRERF1	Del_14q24.3	0.779	1
9p-Del	Del_1q43	0.779	1
Amp_2p24.3	Del_13q14.2	0.779	1
NIPBL	Amp_19p13.3	0.781	1
PDGFRA	Del_9p23	0.782	1
PIK3R1	Del_14q24.3	0.782	1
PLXNA3	Del_6q24.3	0.782	1
PRX	Del_9p23	0.782	1
SMARCA4	Amp_12p13.32	0.782	1
SMARCA4	Del_9p21.3	0.782	1
STK19	Del_9p23	0.782	1
TMEM216	14q-Del	0.782	1
TNRC18	Del_6q24.3	0.782	1
ZMIZ1	Del_6q24.3	0.782	1
FAM47C	Amp_7q31.2	0.783	1
IDH1	MYT1	0.783	1
IDH1	PPL	0.783	1
IDH1	RBBP6	0.783	1
IDH1	SCN4A	0.783	1
IDH1	TRERF1	0.783	1
NIPBL	Amp_7q31.2	0.783	1
11q-Amp	4q-Del	0.783	1
18p-Del	Del_8q24.3	0.783	1
4q-Del	Del_8q24.3	0.783	1
Amp_12p13.32	Del_3q13.31	0.783	1
9p-Del	Del_18q23	0.784	1
Del_11p15.5	Del_Xq21.1	0.784	1
Del_13q14.2	Del_18q23	0.784	1
AGBL1	PTEN	0.785	1
AGBL1	Amp_12q14.1	0.785	1
ARID2	Del_7p22.3	0.785	1
BRAF	Amp_12q14.1	0.785	1
BRAF	Del_3p21.31	0.785	1
BRAF	Del_5p15.33	0.785	1
DDX5	Amp_12q14.1	0.785	1
DDX5	Del_3p21.31	0.785	1
HTRA2	PTEN	0.785	1
HTRA2	Amp_12q14.1	0.785	1
HTRA2	Del_5p15.33	0.785	1
IRS4	Del_11p15.5	0.785	1
MYST4	Amp_13q34	0.785	1
MYST4	Del_7p22.3	0.785	1
NEU2	PTEN	0.785	1
NEU2	Amp_12q14.1	0.785	1
NEU2	Del_3p21.31	0.785	1
NEU2	Del_5p15.33	0.785	1
NUDT11	Amp_13q34	0.785	1
NUDT11	Del_7p22.3	0.785	1
PTEN	ROBO3	0.785	1
ROBO3	Amp_12q14.1	0.785	1
ROBO3	Del_3p21.31	0.785	1
ROBO3	Del_5p15.33	0.785	1
TNRC18	Amp_7q31.2	0.785	1
ZNF512B	Amp_12q14.1	0.785	1
ZNF512B	Del_3p21.31	0.785	1
ZNF512B	Del_5p15.33	0.785	1
1p-Del	Amp_19p13.3	0.785	1
Amp_2p24.3	Del_11p15.5	0.785	1
Amp_13q34	Del_7p22.3	0.785	1
Del_1q43	Del_11p15.5	0.785	1
CUL4B	Amp_3q26.33	0.786	1
DNMT3A	19p-Amp	0.786	1
DNMT3A	Amp_3q26.33	0.786	1
DNMT3A	Amp_Xp11.22	0.786	1
EMG1	IDH2	0.786	1
EMG1	Del_5q34	0.786	1
FAM47C	Del_1p32.3	0.786	1
GAGE2A	TCF12	0.786	1
GAGE2A	15q-Del	0.786	1
IDH2	MYT1	0.786	1
IDH2	PPL	0.786	1
IDH2	RB1	0.786	1
IDH2	RBBP6	0.786	1
IDH2	SCN4A	0.786	1
IDH2	TRERF1	0.786	1
IDH2	Xq-Del	0.786	1
MYT1	Del_3q29	0.786	1
PDGFRA	19p-Amp	0.786	1
PDGFRA	Amp_3q26.33	0.786	1
PDGFRA	Amp_Xp11.22	0.786	1
PIK3CA	Amp_7p11.2	0.786	1
PPL	Amp_17q25.1	0.786	1
PPL	Del_5q34	0.786	1
PRX	Amp_3q26.33	0.786	1
PRX	Amp_Xp11.22	0.786	1
RB1	Amp_17q25.1	0.786	1
RB1	Del_3q29	0.786	1
RB1	Del_5q34	0.786	1
RBBP6	Amp_17q25.1	0.786	1
RBBP6	Del_5q34	0.786	1
SCN4A	Amp_17q25.1	0.786	1
SCN4A	Del_3q29	0.786	1
SCN4A	Del_5q34	0.786	1
SETD2	19p-Amp	0.786	1
STK19	Amp_Xp11.22	0.786	1
TRERF1	Amp_17q25.1	0.786	1
TRERF1	Del_3q29	0.786	1
TRERF1	Del_5q34	0.786	1
Xq-Del	Amp_17q25.1	0.786	1
Xq-Del	Del_5q34	0.786	1
Amp_1q22	Amp_Xp11.22	0.786	1
MED9	Del_18q23	0.787	1
SMOC1	Del_18q23	0.787	1
SMOC1	Del_22q13.31	0.787	1
TCF12	Amp_8q24.13	0.787	1
TMEM216	Del_18q23	0.787	1
TMEM216	Del_22q13.31	0.787	1
ANKRD36	Amp_1q32.1	0.788	1
CREBZF	Amp_1q32.1	0.788	1
IRS4	Amp_1q32.1	0.788	1
RBPJ	Amp_1q32.1	0.788	1
RET	Amp_1q32.1	0.788	1
Amp_1q32.1	Amp_2p24.3	0.788	1
CUL4B	Del_1p36.32	0.789	1
GAGE2A	1p-Del	0.789	1
KRAS	10q-Del	0.789	1
MYST4	14q-Del	0.789	1
PIK3R1	Del_5q34	0.789	1
14q-Del	Amp_13q34	0.789	1
FUBP1	18q-Del	0.79	1
PIK3CA	STK19	0.79	1
10p-Amp	Del_6q22.31	0.79	1
13q-Del	18q-Del	0.79	1
18q-Del	Del_6q22.31	0.79	1
AGBL1	Del_1p36.32	0.791	1
DDX5	Del_1p36.32	0.791	1
PLXNA3	Del_Xq21.1	0.791	1
ROBO3	Del_1p36.32	0.791	1
SLC6A3	Del_Xq21.1	0.791	1
TNRC18	Del_Xq21.1	0.791	1
ZMIZ1	Del_Xq21.1	0.791	1
Del_14q24.3	Del_18q23	0.791	1
KRAS	Del_4q34.3	0.792	1
MED9	11p-Del	0.792	1
PIK3CA	10q-Del	0.792	1
SMOC1	11p-Del	0.792	1
TMEM216	11p-Del	0.792	1
AGBL1	Del_6p25.3	0.793	1
ATRX	NUDT11	0.793	1
DDX5	Del_6p25.3	0.793	1
ROBO3	Del_6p25.3	0.793	1
ZNF512B	Del_6p25.3	0.793	1
DDX5	Del_1p32.3	0.794	1
EMG1	Del_19q13.41	0.794	1
PPL	Del_19q13.41	0.794	1
ROBO3	Del_1p32.3	0.794	1
Xq-Del	Del_19q13.41	0.794	1
ARID1A	Xq-Del	0.795	1
EMG1	Amp_4q12	0.795	1
FAM47C	Amp_12q14.1	0.795	1
FAM47C	Del_5p15.33	0.795	1
MYT1	Amp_4q12	0.795	1
NIPBL	PTEN	0.795	1
NIPBL	Amp_12q14.1	0.795	1
PPL	Amp_4q12	0.795	1
RB1	Amp_4q12	0.795	1
RBBP6	Amp_4q12	0.795	1
SCN4A	Amp_4q12	0.795	1
TRERF1	Amp_4q12	0.795	1
10p-Del	15q-Del	0.795	1
Xq-Del	Amp_4q12	0.795	1
Amp_3q26.33	Amp_10p15.3	0.795	1
Amp_19p13.2	Del_5p15.33	0.795	1
Del_8q24.3	Del_12q12	0.795	1
EGFR	Del_6p25.3	0.796	1
GAGE2A	10p-Del	0.796	1
GAGE2A	Del_19q13.41	0.796	1
KRAS	Amp_8q24.13	0.796	1
ZMIZ1	Del_11p15.1	0.796	1
Del_8q24.3	Del_14q24.3	0.796	1
ARID2	Del_22q13.31	0.797	1
CIB1	18p-Del	0.797	1
CIB1	Amp_11q24.1	0.797	1
DNMT3A	Del_2q37.3	0.797	1
KRT3	18p-Del	0.797	1
KRT3	4q-Del	0.797	1
KRT3	Amp_11q24.1	0.797	1
NAP1L2	18p-Del	0.797	1
NAP1L2	4q-Del	0.797	1
NAP1L2	Amp_11q24.1	0.797	1
NRAS	18p-Del	0.797	1
NRAS	Amp_11q24.1	0.797	1
SETD2	Del_2q37.3	0.797	1
SRPX	18p-Del	0.797	1
SRPX	4q-Del	0.797	1
SRPX	Amp_11q24.1	0.797	1
TP53	Del_1q43	0.797	1
ZNF709	18p-Del	0.797	1
ZNF709	4q-Del	0.797	1
ZNF709	Amp_11q24.1	0.797	1
CIB1	Del_19q13.41	0.798	1
NAP1L2	Del_19q13.41	0.798	1
SRPX	Del_19q13.41	0.798	1
ANKRD36	11q-Amp	0.799	1
ANKRD36	Del_8q24.3	0.799	1
CREBZF	11q-Amp	0.799	1
CREBZF	Del_8q24.3	0.799	1
IRS4	11q-Amp	0.799	1
KRAS	10p-Del	0.799	1
PTPN11	11q-Amp	0.799	1
RBPJ	11q-Amp	0.799	1
RBPJ	Del_8q24.3	0.799	1
RET	11q-Amp	0.799	1
RET	Del_8q24.3	0.799	1
11q-Amp	Amp_2p24.3	0.799	1
11q-Amp	Del_1q43	0.799	1
8q-Amp	Amp_12p13.32	0.799	1
Amp_2p24.3	Del_8q24.3	0.799	1
Del_1q43	Del_8q24.3	0.799	1
DDX5	19q-Del	0.8	1
HTRA2	19q-Del	0.8	1
NEU2	19q-Del	0.8	1
ROBO3	19q-Del	0.8	1
TCF12	Del_1p36.32	0.8	1
11p-Del	4p-Del	0.8	1
9q-Del	Del_1p36.32	0.8	1
Amp_1q32.1	Del_6q22.31	0.8	1
Del_5p15.33	Del_6q24.3	0.8	1
AGBL1	PIK3R1	0.801	1
CIC	ZNF709	0.801	1
CUL4B	Del_19q13.41	0.801	1
HTRA2	PIK3R1	0.801	1
IDH2	7p-Amp	0.801	1
NEU2	PIK3R1	0.801	1
PIK3R1	ROBO3	0.801	1
FUBP1	TNRC18	0.802	1
FUBP1	ZMIZ1	0.802	1
MED9	Amp_10p15.3	0.802	1
PLXNA3	13q-Del	0.802	1
PLXNA3	Del_6q22.31	0.802	1
SMOC1	Amp_10p15.3	0.802	1
TMEM216	Amp_10p15.3	0.802	1
TNRC18	Del_6q22.31	0.802	1
ZMIZ1	Del_6q22.31	0.802	1
10q-Del	Del_3q13.31	0.802	1
13q-Del	Xp-Del	0.802	1
Amp_7q31.2	Del_4q34.3	0.802	1
Amp_7q32.3	Amp_Xp11.22	0.802	1
ARID2	Amp_1q22	0.803	1
CUL4B	Amp_13q34	0.803	1
CUL4B	Del_7p22.3	0.803	1
DNMT3A	Amp_13q34	0.803	1
DNMT3A	Del_7p22.3	0.803	1
IDH2	ZBTB20	0.803	1
IRS4	Del_9p21.3	0.803	1
MYST4	Amp_1q22	0.803	1
NIPBL	PIK3CA	0.803	1
NUDT11	Amp_1q22	0.803	1
PDGFRA	Amp_13q34	0.803	1
PDGFRA	Del_7p22.3	0.803	1
PRX	Amp_13q34	0.803	1
PRX	Del_7p22.3	0.803	1
SETD2	Amp_13q34	0.803	1
SETD2	Del_7p22.3	0.803	1
STK19	Amp_13q34	0.803	1
ZBTB20	Del_3q29	0.803	1
4p-Del	Amp_17q25.1	0.803	1
4p-Del	Del_3q29	0.803	1
6q-Del	Del_3p21.31	0.803	1
Amp_1q22	Amp_13q34	0.803	1
Amp_1q22	Del_7p22.3	0.803	1
Del_1q43	Del_9p21.3	0.803	1
CIB1	Del_12q12	0.804	1
CUL4B	NOTCH1	0.804	1
KRT3	Del_12q12	0.804	1
NAP1L2	Del_12q12	0.804	1
NOTCH1	PDGFRA	0.804	1
NOTCH1	SETD2	0.804	1
NRAS	Del_12q12	0.804	1
SRPX	Del_12q12	0.804	1
TCF12	4q-Del	0.804	1
TCF12	Amp_11q24.1	0.804	1
ZNF709	Del_12q12	0.804	1
7p-Amp	Del_4q34.3	0.804	1
15q-Del	4q-Del	0.804	1
15q-Del	Amp_11q24.1	0.804	1
EMG1	FAM47C	0.805	1
EMG1	NIPBL	0.805	1
EMG1	Amp_19p13.2	0.805	1
FAM47C	Xq-Del	0.805	1
MYT1	Amp_19p13.2	0.805	1
NIPBL	Xq-Del	0.805	1
PIK3CA	Del_4q34.3	0.805	1
PPL	Amp_19p13.2	0.805	1
RB1	Amp_19p13.2	0.805	1
RBBP6	Amp_19p13.2	0.805	1
SCN4A	Amp_19p13.2	0.805	1
TCF12	Del_1p32.3	0.805	1
Xq-Del	Amp_19p13.2	0.805	1
ANKRD36	7p-Amp	0.806	1
IRS4	7p-Amp	0.806	1
PLXNA3	Amp_3q26.33	0.806	1
PLXNA3	Amp_Xp11.22	0.806	1
RET	7p-Amp	0.806	1
SLC6A3	19p-Amp	0.806	1
SLC6A3	Amp_3q26.33	0.806	1
SLC6A3	Amp_Xp11.22	0.806	1
TNRC18	19p-Amp	0.806	1
TNRC18	Amp_3q26.33	0.806	1
TNRC18	Amp_Xp11.22	0.806	1
ZMIZ1	19p-Amp	0.806	1
ZMIZ1	Amp_3q26.33	0.806	1
ZMIZ1	Amp_Xp11.22	0.806	1
10p-Amp	11q-Amp	0.806	1
19p-Amp	Xp-Del	0.806	1
7p-Amp	Amp_2p24.3	0.806	1
7p-Amp	Del_1q43	0.806	1
7q-Amp	Del_2q37.3	0.806	1
11p-Del	Del_7p22.3	0.806	1
18q-Del	Del_8q24.3	0.806	1
22q-Del	Del_8q24.3	0.806	1
Xp-Del	Amp_3q26.33	0.806	1
Xp-Del	Amp_Xp11.22	0.806	1
Amp_7q32.3	Del_4q34.3	0.806	1
11q-Amp	Amp_7q32.3	0.807	1
13q-Del	Del_2q37.3	0.807	1
18p-Del	Amp_11q24.1	0.807	1
Amp_7q32.3	Del_8q24.3	0.807	1
Amp_12p13.32	Del_Xq21.1	0.807	1
BRAF	Del_9p23	0.808	1
DDX5	Del_9p23	0.808	1
EGFR	MED9	0.808	1
EGFR	SMOC1	0.808	1
EGFR	TMEM216	0.808	1
ROBO3	Del_9p23	0.808	1
ZNF512B	Del_9p23	0.808	1
7q-Amp	22q-Del	0.808	1
NOTCH1	4q-Del	0.809	1
TP53	11q-Amp	0.809	1
12q-Del	Del_4q34.3	0.809	1
Del_3q13.31	Del_4q34.3	0.809	1
AGBL1	ZBTB20	0.81	1
AGBL1	4p-Del	0.81	1
ANKRD36	TCF12	0.81	1
ANKRD36	15q-Del	0.81	1
ANKRD36	9q-Del	0.81	1
BRAF	4p-Del	0.81	1
CREBZF	TCF12	0.81	1
CREBZF	15q-Del	0.81	1
DDX5	4p-Del	0.81	1
FUBP1	Amp_19p13.3	0.81	1
HTRA2	ZBTB20	0.81	1
IRS4	TCF12	0.81	1
IRS4	15q-Del	0.81	1
IRS4	9q-Del	0.81	1
NEU2	ZBTB20	0.81	1
NEU2	4p-Del	0.81	1
PTPN11	TCF12	0.81	1
PTPN11	15q-Del	0.81	1
PTPN11	9q-Del	0.81	1
RBPJ	TCF12	0.81	1
RBPJ	15q-Del	0.81	1
RET	TCF12	0.81	1
RET	15q-Del	0.81	1
RET	9q-Del	0.81	1
ROBO3	ZBTB20	0.81	1
ROBO3	4p-Del	0.81	1
TCF12	Amp_2p24.3	0.81	1
TCF12	Del_1q43	0.81	1
ZNF512B	4p-Del	0.81	1
15q-Del	Amp_2p24.3	0.81	1
15q-Del	Del_1q43	0.81	1
9q-Del	Amp_2p24.3	0.81	1
CIB1	SMARCA4	0.811	1
CIB1	10p-Amp	0.811	1
CIB1	18q-Del	0.811	1
KRAS	Del_19q13.42	0.811	1
KRT3	SMARCA4	0.811	1
KRT3	18q-Del	0.811	1
KRT3	22q-Del	0.811	1
NAP1L2	SMARCA4	0.811	1
NAP1L2	10p-Amp	0.811	1
NAP1L2	18q-Del	0.811	1
NAP1L2	22q-Del	0.811	1
NRAS	SMARCA4	0.811	1
NRAS	18q-Del	0.811	1
SMARCA4	SRPX	0.811	1
SMARCA4	ZNF709	0.811	1
SRPX	10p-Amp	0.811	1
SRPX	18q-Del	0.811	1
SRPX	22q-Del	0.811	1
ZNF709	18q-Del	0.811	1
ZNF709	22q-Del	0.811	1
11p-Del	Del_14q24.3	0.811	1
GAGE2A	Del_Xq21.1	0.812	1
9p-Del	Amp_Xp11.22	0.812	1
Amp_Xp11.22	Del_13q14.2	0.812	1
ATRX	Amp_7q32.3	0.813	1
KRAS	Del_6q24.3	0.813	1
NOTCH1	Amp_7q32.3	0.813	1
ARID2	CIC	0.814	1
DNMT3A	7q-Amp	0.814	1
PDGFRA	Amp_7p11.2	0.814	1
PRX	7q-Amp	0.814	1
SETD2	7q-Amp	0.814	1
TCF12	19q-Del	0.814	1
7q-Amp	Amp_1q22	0.814	1
Amp_1q22	Amp_7p11.2	0.814	1
Del_4q34.3	Del_19q13.42	0.814	1
EMG1	Amp_1q32.1	0.815	1
IDH2	Amp_7q32.3	0.815	1
MYT1	Amp_1q32.1	0.815	1
PPL	Amp_1q32.1	0.815	1
RBBP6	Amp_1q32.1	0.815	1
SCN4A	Amp_1q32.1	0.815	1
TRERF1	Amp_1q32.1	0.815	1
15q-Del	Del_12q12	0.815	1
Amp_12p13.32	Amp_12q14.1	0.815	1
Del_2q37.3	Del_12q12	0.815	1
11q-Amp	Del_11p15.1	0.816	1
7q-Amp	9q-Del	0.816	1
12q-Del	Amp_8q24.13	0.816	1
15q-Del	Amp_7p11.2	0.816	1
CIB1	Amp_19p13.3	0.817	1
KRT3	Amp_19p13.3	0.817	1
NAP1L2	8q-Amp	0.817	1
NRAS	8q-Amp	0.817	1
NRAS	Amp_19p13.3	0.817	1
SRPX	8q-Amp	0.817	1
SRPX	Amp_19p13.3	0.817	1
ZNF709	8q-Amp	0.817	1
ZNF709	Amp_19p13.3	0.817	1
AGBL1	IDH2	0.818	1
AGBL1	Amp_17q25.1	0.818	1
AGBL1	Del_3q29	0.818	1
BRAF	IDH2	0.818	1
BRAF	Amp_17q25.1	0.818	1
BRAF	Del_3q29	0.818	1
BRAF	Del_5q34	0.818	1
DDX5	IDH2	0.818	1
DDX5	Amp_17q25.1	0.818	1
DDX5	Del_3q29	0.818	1
DDX5	Del_5q34	0.818	1
HTRA2	Amp_17q25.1	0.818	1
HTRA2	Del_5q34	0.818	1
IDH2	NEU2	0.818	1
IDH2	ROBO3	0.818	1
IDH2	ZNF512B	0.818	1
NEU2	Amp_17q25.1	0.818	1
NEU2	Del_5q34	0.818	1
NF1	SMOC1	0.818	1
NF1	TMEM216	0.818	1
ROBO3	Amp_17q25.1	0.818	1
ROBO3	Del_3q29	0.818	1
ROBO3	Del_5q34	0.818	1
TMEM216	6q-Del	0.818	1
ZNF512B	Del_5q34	0.818	1
11q-Amp	8q-Amp	0.818	1
11q-Amp	Amp_19p13.3	0.818	1
8q-Amp	Del_8q24.3	0.818	1
Amp_3q26.33	Del_11p15.5	0.818	1
Amp_17q25.1	Del_3q29	0.818	1
CUL4B	14q-Del	0.819	1
CUL4B	Amp_1q22	0.819	1
DNMT3A	14q-Del	0.819	1
PDGFRA	14q-Del	0.819	1
PDGFRA	Amp_1q22	0.819	1
PRX	Amp_1q22	0.819	1
SETD2	Amp_1q22	0.819	1
STK19	Amp_1q22	0.819	1
14q-Del	Amp_1q22	0.819	1
4p-Del	Amp_4q12	0.819	1
KRAS	Del_11p15.1	0.82	1
11p-Del	Amp_17q25.1	0.82	1
14q-Del	Amp_4q12	0.82	1
ANKRD36	10q-Del	0.821	1
ARID2	Xp-Del	0.821	1
FAM47C	PIK3R1	0.821	1
MYST4	Xp-Del	0.821	1
NF1	7p-Amp	0.821	1
NF1	Amp_3q26.33	0.821	1
NF1	Amp_Xp11.22	0.821	1
NUDT11	Xp-Del	0.821	1
PLXNA3	Amp_13q34	0.821	1
PLXNA3	Del_7p22.3	0.821	1
SLC6A3	Amp_13q34	0.821	1
SLC6A3	Del_7p22.3	0.821	1
SMARCA4	7p-Amp	0.821	1
TNRC18	Amp_13q34	0.821	1
TNRC18	Del_7p22.3	0.821	1
ZMIZ1	Amp_13q34	0.821	1
ZMIZ1	Del_7p22.3	0.821	1
10p-Amp	7p-Amp	0.821	1
10q-Del	Del_1q43	0.821	1
4q-Del	Del_12q12	0.821	1
6q-Del	Amp_Xp11.22	0.821	1
Xp-Del	Amp_13q34	0.821	1
ANKRD36	12q-Del	0.822	1
CREBZF	12q-Del	0.822	1
CREBZF	Del_3q13.31	0.822	1
FAM47C	Del_11p15.5	0.822	1
IRS4	12q-Del	0.822	1
IRS4	Del_3q13.31	0.822	1
MYST4	Amp_10p15.3	0.822	1
NUDT11	Amp_10p15.3	0.822	1
PIK3CA	PLXNA3	0.822	1
PTPN11	12q-Del	0.822	1
PTPN11	Del_3q13.31	0.822	1
RBPJ	12q-Del	0.822	1
RBPJ	Del_3q13.31	0.822	1
RET	12q-Del	0.822	1
RET	Del_3q13.31	0.822	1
12q-Del	Amp_2p24.3	0.822	1
12q-Del	Del_1q43	0.822	1
Amp_2p24.3	Del_3q13.31	0.822	1
Del_1q43	Del_3q13.31	0.822	1
CIB1	Amp_7q32.3	0.823	1
MED9	Amp_12p13.32	0.823	1
SMOC1	Amp_12p13.32	0.823	1
SRPX	Amp_7q32.3	0.823	1
TMEM216	Amp_12p13.32	0.823	1
10p-Del	Del_3q13.31	0.823	1
13q-Del	6q-Del	0.823	1
18q-Del	Amp_7q31.2	0.823	1
Amp_7q32.3	Del_3p21.31	0.823	1
Amp_7q32.3	Del_5p15.33	0.823	1
ATRX	Amp_7q31.2	0.824	1
CIB1	PTEN	0.824	1
CIB1	Amp_12q14.1	0.824	1
CIB1	Del_3p21.31	0.824	1
CIB1	Del_5p15.33	0.824	1
CUL4B	Del_14q24.3	0.824	1
FUBP1	KRAS	0.824	1
KRAS	13q-Del	0.824	1
KRAS	Del_6q22.31	0.824	1
KRAS	Del_19q13.41	0.824	1
KRT3	PTEN	0.824	1
KRT3	Del_3p21.31	0.824	1
KRT3	Del_5p15.33	0.824	1
NAP1L2	PTEN	0.824	1
NAP1L2	Amp_12q14.1	0.824	1
NAP1L2	Del_3p21.31	0.824	1
NAP1L2	Del_5p15.33	0.824	1
NRAS	PTEN	0.824	1
NRAS	Amp_12q14.1	0.824	1
NRAS	Del_5p15.33	0.824	1
PTEN	SRPX	0.824	1
PTEN	ZNF709	0.824	1
SETD2	Del_14q24.3	0.824	1
SRPX	Amp_12q14.1	0.824	1
SRPX	Del_3p21.31	0.824	1
SRPX	Del_5p15.33	0.824	1
ZNF709	Del_3p21.31	0.824	1
ZNF709	Del_5p15.33	0.824	1
7p-Amp	14q-Del	0.824	1
12q-Del	4q-Del	0.824	1
13q-Del	Del_8q24.3	0.824	1
4q-Del	Del_3q13.31	0.824	1
Amp_1q22	Del_14q24.3	0.824	1
Amp_7p11.2	Del_3q29	0.824	1
Amp_11q24.1	Del_3q13.31	0.824	1
DDX5	1p-Del	0.825	1
EMG1	Del_8q24.3	0.825	1
GAGE2A	19p-Amp	0.825	1
GAGE2A	Amp_3q26.33	0.825	1
MYT1	11q-Amp	0.825	1
MYT1	Del_8q24.3	0.825	1
PPL	11q-Amp	0.825	1
RB1	11q-Amp	0.825	1
RB1	Del_8q24.3	0.825	1
RBBP6	11q-Amp	0.825	1
RBBP6	Del_8q24.3	0.825	1
SCN4A	11q-Amp	0.825	1
SCN4A	Del_8q24.3	0.825	1
SMARCA4	TCF12	0.825	1
TCF12	10p-Amp	0.825	1
TRERF1	11q-Amp	0.825	1
TRERF1	Del_8q24.3	0.825	1
10p-Amp	9q-Del	0.825	1
11q-Amp	Xq-Del	0.825	1
15q-Del	22q-Del	0.825	1
Amp_1q32.1	Del_6p25.3	0.825	1
AGBL1	Amp_4q12	0.826	1
ANKRD36	Del_4q34.3	0.826	1
ARID1A	HTRA2	0.826	1
ARID1A	NEU2	0.826	1
ARID1A	ROBO3	0.826	1
BRAF	Amp_4q12	0.826	1
CUL4B	Del_18q23	0.826	1
DNMT3A	Del_18q23	0.826	1
HTRA2	Amp_4q12	0.826	1
NEU2	Amp_4q12	0.826	1
PDGFRA	Del_18q23	0.826	1
PRX	Del_22q13.31	0.826	1
RET	Del_4q34.3	0.826	1
ROBO3	Amp_4q12	0.826	1
STK19	Del_18q23	0.826	1
ZNF512B	Amp_4q12	0.826	1
7p-Amp	Amp_4q12	0.826	1
10q-Del	Del_3q29	0.826	1
15q-Del	Del_6q24.3	0.826	1
9q-Del	Del_6q24.3	0.826	1
Amp_1q22	Del_18q23	0.826	1
Amp_2p24.3	Del_4q34.3	0.826	1
Del_1q43	Del_4q34.3	0.826	1
Del_9p23	Del_18q23	0.826	1
Amp_8q24.13	Amp_11q24.1	0.827	1
Amp_Xp11.22	Del_10q26.3	0.827	1
CUL4B	Del_9p21.3	0.828	1
PRX	Del_9p21.3	0.828	1
RET	Del_1p36.32	0.828	1
STK19	Del_9p21.3	0.828	1
15q-Del	Del_14q24.3	0.828	1
9p-Del	Del_11p15.5	0.828	1
9q-Del	Del_14q24.3	0.828	1
Amp_8q24.13	Del_9p23	0.828	1
ARID1A	Del_18q23	0.829	1
EMG1	9p-Del	0.829	1
EMG1	Del_13q14.2	0.829	1
MYT1	9p-Del	0.829	1
MYT1	Del_13q14.2	0.829	1
RB1	9p-Del	0.829	1
SCN4A	9p-Del	0.829	1
SLC6A3	Del_2q37.3	0.829	1
TRERF1	9p-Del	0.829	1
TRERF1	Del_13q14.2	0.829	1
ZMIZ1	Del_2q37.3	0.829	1
8q-Amp	Del_10q26.3	0.829	1
Xq-Del	Del_13q14.2	0.829	1
Del_6q24.3	Del_18q23	0.829	1
BRAF	7q-Amp	0.83	1
BRAF	Amp_7p11.2	0.83	1
DDX5	TP53	0.83	1
DDX5	Amp_7p11.2	0.83	1
EGFR	NUDT11	0.83	1
HTRA2	TP53	0.83	1
HTRA2	7q-Amp	0.83	1
HTRA2	Amp_7p11.2	0.83	1
NEU2	TP53	0.83	1
NEU2	7q-Amp	0.83	1
PIK3CA	10p-Del	0.83	1
PTEN	Del_8q24.3	0.83	1
ZNF512B	7q-Amp	0.83	1
ZNF512B	Amp_7p11.2	0.83	1
13q-Del	Del_1p32.3	0.83	1
Amp_12p13.32	Amp_Xp11.22	0.83	1
Amp_12q14.1	Del_8q24.3	0.83	1
Amp_12q14.1	Del_11p15.5	0.83	1
CIB1	Del_6p25.3	0.831	1
CREBZF	Amp_8q24.13	0.831	1
GAGE2A	Del_11p15.1	0.831	1
IRS4	Amp_8q24.13	0.831	1
NAP1L2	Del_6p25.3	0.831	1
NRAS	Del_6p25.3	0.831	1
SRPX	Del_6p25.3	0.831	1
18p-Del	Amp_7q32.3	0.831	1
Amp_2p24.3	Amp_8q24.13	0.831	1
Amp_12p13.32	Del_6p25.3	0.831	1
ANKRD36	IDH1	0.832	1
ARID1A	IDH2	0.832	1
CIC	IRS4	0.832	1
CIC	RET	0.832	1
14q-Del	4q-Del	0.832	1
Amp_4q12	Amp_17q25.1	0.832	1
DNMT3A	11p-Del	0.833	1
MYT1	Del_11p15.5	0.833	1
RBBP6	Del_11p15.5	0.833	1
SETD2	11p-Del	0.833	1
SMARCA4	Del_2q37.3	0.833	1
Xq-Del	Del_11p15.5	0.833	1
Amp_7p11.2	Amp_10p15.3	0.833	1
ANKRD36	Del_Xq21.1	0.834	1
CREBZF	Del_Xq21.1	0.834	1
FAM47C	ZBTB20	0.834	1
IRS4	Del_Xq21.1	0.834	1
NIPBL	ZBTB20	0.834	1
PTPN11	Del_Xq21.1	0.834	1
RBPJ	Del_Xq21.1	0.834	1
RET	Del_Xq21.1	0.834	1
Amp_2p24.3	Del_Xq21.1	0.834	1
Amp_17q25.1	Del_4q34.3	0.834	1
AGBL1	FAM47C	0.835	1
AGBL1	NIPBL	0.835	1
BRAF	Amp_19p13.2	0.835	1
EMG1	TCF12	0.835	1
EMG1	9q-Del	0.835	1
FAM47C	HTRA2	0.835	1
FAM47C	NEU2	0.835	1
FAM47C	ROBO3	0.835	1
HTRA2	NIPBL	0.835	1
HTRA2	Amp_19p13.2	0.835	1
KRAS	PIK3CA	0.835	1
MYT1	15q-Del	0.835	1
MYT1	9q-Del	0.835	1
NEU2	NIPBL	0.835	1
NEU2	Amp_19p13.2	0.835	1
NIPBL	ROBO3	0.835	1
NOTCH1	PLXNA3	0.835	1
NOTCH1	TNRC18	0.835	1
NOTCH1	ZMIZ1	0.835	1
PPL	TCF12	0.835	1
PPL	15q-Del	0.835	1
PPL	9q-Del	0.835	1
RB1	TCF12	0.835	1
RB1	15q-Del	0.835	1
RB1	9q-Del	0.835	1
RBBP6	TCF12	0.835	1
RBBP6	15q-Del	0.835	1
RBBP6	9q-Del	0.835	1
ROBO3	Amp_19p13.2	0.835	1
SCN4A	TCF12	0.835	1
SCN4A	15q-Del	0.835	1
SCN4A	9q-Del	0.835	1
TCF12	Xq-Del	0.835	1
TRERF1	15q-Del	0.835	1
ZNF512B	Amp_19p13.2	0.835	1
15q-Del	Xq-Del	0.835	1
ANKRD36	10p-Del	0.836	1
ARID1A	IDH1	0.836	1
CUL4B	Xp-Del	0.836	1
NF1	PIK3R1	0.836	1
PDGFRA	Xp-Del	0.836	1
PIK3R1	6q-Del	0.836	1
PLXNA3	Amp_1q22	0.836	1
SETD2	Xp-Del	0.836	1
SLC6A3	Amp_1q22	0.836	1
STK19	Xp-Del	0.836	1
TNRC18	Amp_1q22	0.836	1
ZMIZ1	Amp_1q22	0.836	1
15q-Del	Amp_19p13.3	0.836	1
9q-Del	Amp_19p13.3	0.836	1
Xp-Del	Amp_1q22	0.836	1
FUBP1	GAGE2A	0.837	1
13q-Del	Del_6q24.3	0.837	1
Del_4q34.3	Del_12q12	0.837	1
AGBL1	Del_14q24.3	0.838	1
CIB1	PIK3R1	0.838	1
HTRA2	Del_14q24.3	0.838	1
KRAS	Del_2q37.3	0.838	1
KRT3	PIK3R1	0.838	1
NAP1L2	PIK3R1	0.838	1
NAP1L2	Del_10q26.3	0.838	1
NEU2	Del_14q24.3	0.838	1
NRAS	PIK3R1	0.838	1
PIK3R1	SRPX	0.838	1
PIK3R1	ZNF709	0.838	1
ROBO3	Del_14q24.3	0.838	1
ZNF709	Del_10q26.3	0.838	1
GAGE2A	MYST4	0.839	1
GAGE2A	NUDT11	0.839	1
GAGE2A	Amp_13q34	0.839	1
TP53	Del_6p25.3	0.839	1
PIK3CA	Amp_19p13.3	0.84	1
Amp_7p11.2	Del_14q24.3	0.84	1
ATRX	CIB1	0.841	1
ATRX	KRT3	0.841	1
ATRX	NAP1L2	0.841	1
ATRX	ZNF709	0.841	1
FAM47C	1p-Del	0.841	1
11q-Amp	Del_6p25.3	0.841	1
KRAS	NOTCH1	0.842	1
Amp_7q31.2	Amp_Xp11.22	0.842	1
Del_11p15.1	Del_14q24.3	0.842	1
18p-Del	Del_22q13.31	0.843	1
4q-Del	Del_18q23	0.843	1
4q-Del	Del_22q13.31	0.843	1
Amp_11q24.1	Del_18q23	0.843	1
AGBL1	Amp_1q32.1	0.844	1
BRAF	Amp_1q32.1	0.844	1
DDX5	Amp_1q32.1	0.844	1
HTRA2	Amp_1q32.1	0.844	1
MED9	18p-Del	0.844	1
MED9	4q-Del	0.844	1
MED9	Amp_11q24.1	0.844	1
NEU2	Amp_1q32.1	0.844	1
ROBO3	Amp_1q32.1	0.844	1
SMARCA4	Del_3q13.31	0.844	1
SMOC1	18p-Del	0.844	1
SMOC1	4q-Del	0.844	1
SMOC1	Amp_11q24.1	0.844	1
TMEM216	18p-Del	0.844	1
TMEM216	Amp_11q24.1	0.844	1
ZNF512B	Amp_1q32.1	0.844	1
10p-Amp	12q-Del	0.844	1
12q-Del	22q-Del	0.844	1
18q-Del	Del_3q13.31	0.844	1
4q-Del	Del_Xq21.1	0.844	1
ARID2	6q-Del	0.845	1
CIB1	ZBTB20	0.845	1
EMG1	12q-Del	0.845	1
EMG1	Del_3q13.31	0.845	1
KRT3	ZBTB20	0.845	1
KRT3	4p-Del	0.845	1
MYST4	NF1	0.845	1
MYT1	Del_3q13.31	0.845	1
NAP1L2	ZBTB20	0.845	1
NAP1L2	4p-Del	0.845	1
NF1	NUDT11	0.845	1
NF1	Del_7p22.3	0.845	1
NRAS	ZBTB20	0.845	1
NRAS	4p-Del	0.845	1
PPL	12q-Del	0.845	1
PPL	Del_3q13.31	0.845	1
RB1	12q-Del	0.845	1
RB1	Del_3q13.31	0.845	1
RBBP6	12q-Del	0.845	1
RBBP6	Del_3q13.31	0.845	1
SCN4A	12q-Del	0.845	1
SCN4A	Del_3q13.31	0.845	1
SRPX	ZBTB20	0.845	1
SRPX	4p-Del	0.845	1
TRERF1	12q-Del	0.845	1
TRERF1	Del_3q13.31	0.845	1
ZNF709	4p-Del	0.845	1
12q-Del	Xq-Del	0.845	1
6q-Del	Amp_13q34	0.845	1
Amp_7q32.3	Del_7p22.3	0.845	1
ANKRD36	19p-Amp	0.846	1
ANKRD36	Amp_Xp11.22	0.846	1
ARID2	Del_13q14.2	0.846	1
ATRX	MYT1	0.846	1
CREBZF	19p-Amp	0.846	1
CREBZF	Amp_3q26.33	0.846	1
CREBZF	Amp_Xp11.22	0.846	1
FAM47C	Del_3q29	0.846	1
IRS4	19p-Amp	0.846	1
IRS4	Amp_Xp11.22	0.846	1
MYST4	Del_13q14.2	0.846	1
PTPN11	19p-Amp	0.846	1
PTPN11	Amp_Xp11.22	0.846	1
RBPJ	19p-Amp	0.846	1
RBPJ	Amp_3q26.33	0.846	1
RBPJ	Amp_Xp11.22	0.846	1
RET	19p-Amp	0.846	1
RET	Amp_3q26.33	0.846	1
RET	Amp_Xp11.22	0.846	1
SRPX	Amp_7q31.2	0.846	1
19p-Amp	Amp_2p24.3	0.846	1
11p-Del	Del_9p23	0.846	1
Amp_2p24.3	Amp_3q26.33	0.846	1
Amp_2p24.3	Amp_Xp11.22	0.846	1
Amp_3q26.33	Del_1q43	0.846	1
Amp_17q25.1	Amp_19p13.2	0.846	1
Amp_19p13.2	Del_3q29	0.846	1
Amp_Xp11.22	Del_1q43	0.846	1
PDGFRA	Amp_10p15.3	0.847	1
PTEN	TCF12	0.847	1
PTEN	9q-Del	0.847	1
SETD2	Amp_10p15.3	0.847	1
15q-Del	Del_3p21.31	0.847	1
15q-Del	Del_5p15.33	0.847	1
9q-Del	Amp_12q14.1	0.847	1
FUBP1	9q-Del	0.848	1
IDH1	Del_4q34.3	0.848	1
NIPBL	Del_18q23	0.848	1
PIK3CA	11q-Amp	0.848	1
TNRC18	14q-Del	0.848	1
ZMIZ1	14q-Del	0.848	1
13q-Del	15q-Del	0.848	1
14q-Del	Del_12q12	0.848	1
15q-Del	Del_6q22.31	0.848	1
22q-Del	Del_12q12	0.848	1
9q-Del	Del_6q22.31	0.848	1
EGFR	Amp_17q25.1	0.849	1
KRAS	14q-Del	0.849	1
MED9	Del_12q12	0.849	1
SMOC1	Del_12q12	0.849	1
8q-Amp	4q-Del	0.849	1
10p-Del	Del_3q29	0.849	1
Amp_11q24.1	Amp_19p13.3	0.849	1
EMG1	7p-Amp	0.85	1
FAM47C	7p-Amp	0.85	1
NIPBL	7p-Amp	0.85	1
PPL	7p-Amp	0.85	1
RBBP6	7p-Amp	0.85	1
SCN4A	7p-Amp	0.85	1
TRERF1	7p-Amp	0.85	1
Del_9p23	Del_Xq21.1	0.85	1
PLXNA3	Xp-Del	0.851	1
SLC6A3	Xp-Del	0.851	1
TCF12	Del_19q13.42	0.851	1
TNRC18	Xp-Del	0.851	1
11q-Amp	Amp_7q31.2	0.851	1
9q-Del	Del_19q13.42	0.851	1
Amp_7q31.2	Del_8q24.3	0.851	1
Del_3q13.31	Del_6q24.3	0.851	1
AGBL1	11q-Amp	0.852	1
AGBL1	Del_8q24.3	0.852	1
BRAF	11q-Amp	0.852	1
BRAF	Del_8q24.3	0.852	1
CIB1	Amp_17q25.1	0.852	1
CIB1	Del_5q34	0.852	1
DDX5	11q-Amp	0.852	1
DDX5	Del_8q24.3	0.852	1
HTRA2	11q-Amp	0.852	1
IDH2	KRT3	0.852	1
IDH2	NRAS	0.852	1
IDH2	SRPX	0.852	1
IDH2	ZNF709	0.852	1
KRT3	Del_3q29	0.852	1
NAP1L2	Amp_17q25.1	0.852	1
NAP1L2	Del_3q29	0.852	1
NEU2	11q-Amp	0.852	1
NEU2	Del_8q24.3	0.852	1
NRAS	Amp_17q25.1	0.852	1
NRAS	Del_5q34	0.852	1
PIK3R1	11q-Amp	0.852	1
PIK3R1	Del_8q24.3	0.852	1
PRX	TP53	0.852	1
ROBO3	11q-Amp	0.852	1
ROBO3	Del_8q24.3	0.852	1
SRPX	Amp_17q25.1	0.852	1
SRPX	Del_3q29	0.852	1
SRPX	Del_5q34	0.852	1
STK19	TP53	0.852	1
TP53	Amp_1q22	0.852	1
ZNF512B	11q-Amp	0.852	1
ZNF512B	Del_8q24.3	0.852	1
ZNF709	Del_3q29	0.852	1
CUL4B	GAGE2A	0.853	1
GAGE2A	PDGFRA	0.853	1
GAGE2A	PRX	0.853	1
GAGE2A	SETD2	0.853	1
GAGE2A	STK19	0.853	1
GAGE2A	Amp_1q22	0.853	1
KRAS	Del_22q13.31	0.853	1
NUDT11	Amp_12p13.32	0.853	1
TCF12	1p-Del	0.853	1
1p-Del	9q-Del	0.853	1
Del_13q14.2	Del_14q24.3	0.853	1
ATRX	GAGE2A	0.854	1
DNMT3A	EGFR	0.854	1
EGFR	PDGFRA	0.854	1
EGFR	Amp_1q22	0.854	1
GAGE2A	PIK3CA	0.854	1
MED9	SMARCA4	0.854	1
MED9	10p-Amp	0.854	1
MED9	18q-Del	0.854	1
SMARCA4	TMEM216	0.854	1
SMOC1	10p-Amp	0.854	1
SMOC1	18q-Del	0.854	1
SMOC1	22q-Del	0.854	1
TMEM216	10p-Amp	0.854	1
TMEM216	18q-Del	0.854	1
TMEM216	22q-Del	0.854	1
TNRC18	7q-Amp	0.854	1
TNRC18	Amp_7p11.2	0.854	1
ZMIZ1	Amp_7p11.2	0.854	1
8q-Amp	12q-Del	0.854	1
8q-Amp	Del_3q13.31	0.854	1
12q-Del	Amp_19p13.3	0.854	1
Amp_19p13.3	Del_3q13.31	0.854	1
ATRX	SMARCA4	0.855	1
22q-Del	Del_4q34.3	0.855	1
CREBZF	Del_6q24.3	0.856	1
EMG1	Del_Xq21.1	0.856	1
KRAS	11p-Del	0.856	1
MYT1	Del_Xq21.1	0.856	1
RB1	Del_Xq21.1	0.856	1
RBBP6	Del_Xq21.1	0.856	1
RBPJ	Del_6q24.3	0.856	1
SCN4A	Del_Xq21.1	0.856	1
TRERF1	Del_Xq21.1	0.856	1
7q-Amp	Del_5p15.33	0.856	1
Amp_2p24.3	Del_6q24.3	0.856	1
Del_2q37.3	Del_8q24.3	0.856	1
ANKRD36	Amp_7q32.3	0.857	1
ARID1A	Amp_10p15.3	0.857	1
FAM47C	11p-Del	0.857	1
IRS4	Amp_7q32.3	0.857	1
PIK3CA	PTEN	0.857	1
PIK3CA	Amp_12q14.1	0.857	1
PLXNA3	Del_1p36.32	0.857	1
RBPJ	Amp_7q32.3	0.857	1
TCF12	Del_6p25.3	0.857	1
Amp_7q32.3	Del_1q43	0.857	1
ANKRD36	ARID2	0.858	1
ANKRD36	MYST4	0.858	1
ANKRD36	NUDT11	0.858	1
ANKRD36	Amp_13q34	0.858	1
ARID2	CREBZF	0.858	1
ARID2	PTPN11	0.858	1
ARID2	Amp_2p24.3	0.858	1
ARID2	Del_1q43	0.858	1
CREBZF	NUDT11	0.858	1
CREBZF	Amp_13q34	0.858	1
CREBZF	Del_7p22.3	0.858	1
FUBP1	Del_14q24.3	0.858	1
IRS4	Amp_13q34	0.858	1
IRS4	Del_7p22.3	0.858	1
MYST4	PTPN11	0.858	1
MYST4	RBPJ	0.858	1
MYST4	Amp_2p24.3	0.858	1
MYST4	Del_1q43	0.858	1
NUDT11	PTPN11	0.858	1
NUDT11	RBPJ	0.858	1
NUDT11	Amp_2p24.3	0.858	1
PLXNA3	Del_19q13.42	0.858	1
PTPN11	Amp_13q34	0.858	1
PTPN11	Del_7p22.3	0.858	1
RBPJ	Amp_13q34	0.858	1
RBPJ	Del_7p22.3	0.858	1
RET	Amp_13q34	0.858	1
RET	Del_7p22.3	0.858	1
13q-Del	Del_14q24.3	0.858	1
Amp_2p24.3	Amp_13q34	0.858	1
Del_1q43	Del_7p22.3	0.858	1
ARID1A	CIB1	0.859	1
ARID1A	FAM47C	0.859	1
ARID1A	KRT3	0.859	1
ARID1A	NRAS	0.859	1
ARID1A	SRPX	0.859	1
ARID1A	ZNF709	0.859	1
ARID1A	Amp_19p13.2	0.859	1
KRT3	Amp_4q12	0.859	1
NAP1L2	Amp_4q12	0.859	1
NRAS	Amp_4q12	0.859	1
SRPX	Amp_4q12	0.859	1
ZNF709	Amp_4q12	0.859	1
14q-Del	Amp_1q32.1	0.859	1
Amp_4q12	Amp_19p13.2	0.859	1
CIC	DNMT3A	0.86	1
MED9	8q-Amp	0.86	1
MED9	Amp_19p13.3	0.86	1
PLXNA3	Del_1p32.3	0.86	1
SMOC1	8q-Amp	0.86	1
SMOC1	Amp_19p13.3	0.86	1
TMEM216	8q-Amp	0.86	1
TMEM216	Amp_19p13.3	0.86	1
10p-Amp	22q-Del	0.86	1
18q-Del	22q-Del	0.86	1
Amp_1q32.1	Del_5q34	0.86	1
AGBL1	TCF12	0.861	1
AGBL1	15q-Del	0.861	1
AGBL1	9q-Del	0.861	1
BRAF	TCF12	0.861	1
BRAF	15q-Del	0.861	1
BRAF	9q-Del	0.861	1
DDX5	TCF12	0.861	1
DDX5	15q-Del	0.861	1
DDX5	9q-Del	0.861	1
HTRA2	TCF12	0.861	1
HTRA2	15q-Del	0.861	1
NEU2	TCF12	0.861	1
NEU2	15q-Del	0.861	1
ROBO3	TCF12	0.861	1
ROBO3	15q-Del	0.861	1
ROBO3	9q-Del	0.861	1
TCF12	ZNF512B	0.861	1
ZNF512B	15q-Del	0.861	1
ZNF512B	9q-Del	0.861	1
IDH2	Amp_7q31.2	0.862	1
PTEN	18p-Del	0.862	1
SMARCA4	Del_Xq21.1	0.862	1
18p-Del	Amp_12q14.1	0.862	1
22q-Del	Del_Xq21.1	0.862	1
4p-Del	Amp_12p13.32	0.862	1
Amp_4q12	Amp_8q24.13	0.862	1
PLXNA3	Del_14q24.3	0.863	1
PTEN	Del_3q13.31	0.863	1
ZBTB20	Del_8q24.3	0.863	1
11q-Amp	4p-Del	0.863	1
19p-Amp	Amp_11q24.1	0.863	1
10q-Del	Xq-Del	0.863	1
12q-Del	Amp_12q14.1	0.863	1
Amp_11q24.1	Amp_Xp11.22	0.863	1
ATRX	PDGFRA	0.864	1
ATRX	STK19	0.864	1
KRAS	Amp_10p15.3	0.864	1
22q-Del	Amp_8q24.13	0.864	1
Del_3q13.31	Del_11p15.1	0.864	1
MED9	PTEN	0.865	1
MED9	Amp_12q14.1	0.865	1
MED9	Del_3p21.31	0.865	1
MED9	Del_5p15.33	0.865	1
PTEN	SMOC1	0.865	1
PTEN	TMEM216	0.865	1
SMOC1	Amp_12q14.1	0.865	1
SMOC1	Del_3p21.31	0.865	1
TMEM216	Amp_12q14.1	0.865	1
TMEM216	Del_3p21.31	0.865	1
TMEM216	Del_5p15.33	0.865	1
14q-Del	Del_1p36.32	0.865	1
Amp_Xp11.22	Del_4q34.3	0.865	1
ARID1A	EGFR	0.866	1
CIB1	FAM47C	0.866	1
CIB1	NIPBL	0.866	1
CIB1	Amp_19p13.2	0.866	1
EGFR	Amp_4q12	0.866	1
EMG1	19p-Amp	0.866	1
EMG1	Amp_3q26.33	0.866	1
EMG1	Amp_Xp11.22	0.866	1
FAM47C	KRT3	0.866	1
FAM47C	NAP1L2	0.866	1
FAM47C	NRAS	0.866	1
FAM47C	SRPX	0.866	1
GAGE2A	PLXNA3	0.866	1
GAGE2A	SLC6A3	0.866	1
GAGE2A	TNRC18	0.866	1
GAGE2A	ZMIZ1	0.866	1
GAGE2A	Xp-Del	0.866	1
IRS4	Del_11p15.1	0.866	1
KRT3	NIPBL	0.866	1
KRT3	Amp_19p13.2	0.866	1
MYT1	19p-Amp	0.866	1
MYT1	Amp_3q26.33	0.866	1
MYT1	Amp_Xp11.22	0.866	1
NAP1L2	NIPBL	0.866	1
NAP1L2	Amp_19p13.2	0.866	1
NIPBL	SRPX	0.866	1
NIPBL	ZNF709	0.866	1
NRAS	Amp_19p13.2	0.866	1
PLXNA3	19q-Del	0.866	1
PPL	19p-Amp	0.866	1
PPL	Amp_3q26.33	0.866	1
RB1	19p-Amp	0.866	1
RB1	Amp_3q26.33	0.866	1
RB1	Amp_Xp11.22	0.866	1
RBBP6	19p-Amp	0.866	1
RBBP6	Amp_3q26.33	0.866	1
RBBP6	Amp_Xp11.22	0.866	1
SCN4A	19p-Amp	0.866	1
SCN4A	Amp_3q26.33	0.866	1
SCN4A	Amp_Xp11.22	0.866	1
SRPX	Amp_19p13.2	0.866	1
TRERF1	19p-Amp	0.866	1
TRERF1	Amp_3q26.33	0.866	1
TRERF1	Amp_Xp11.22	0.866	1
ZNF709	Amp_19p13.2	0.866	1
19p-Amp	Xq-Del	0.866	1
Xq-Del	Amp_3q26.33	0.866	1
Xq-Del	Amp_Xp11.22	0.866	1
Xq-Del	Del_9p21.3	0.866	1
Amp_2p24.3	Del_11p15.1	0.866	1
Del_1q43	Del_11p15.1	0.866	1
Del_8q24.3	Del_13q14.2	0.866	1
ATRX	Del_6q22.31	0.867	1
EGFR	KRAS	0.867	1
MYT1	Del_4q34.3	0.867	1
RB1	Del_4q34.3	0.867	1
Xq-Del	Del_4q34.3	0.867	1
Del_1q43	Del_19q13.42	0.867	1
CUL4B	6q-Del	0.868	1
DNMT3A	6q-Del	0.868	1
NF1	PDGFRA	0.868	1
NF1	STK19	0.868	1
NF1	Amp_1q22	0.868	1
PRX	6q-Del	0.868	1
TP53	13q-Del	0.868	1
18p-Del	Del_13q14.2	0.868	1
6q-Del	Amp_1q22	0.868	1
6q-Del	Amp_17q25.1	0.868	1
6q-Del	Del_3q29	0.868	1
PIK3CA	15q-Del	0.869	1
PTEN	Del_14q24.3	0.869	1
SMOC1	Del_9p21.3	0.869	1
TMEM216	Del_9p21.3	0.869	1
Amp_12q14.1	Del_14q24.3	0.869	1
AGBL1	12q-Del	0.87	1
AGBL1	Del_3q13.31	0.87	1
ANKRD36	CUL4B	0.87	1
ANKRD36	PDGFRA	0.87	1
ANKRD36	PRX	0.87	1
ANKRD36	SETD2	0.87	1
ANKRD36	STK19	0.87	1
ANKRD36	13q-Del	0.87	1
BRAF	12q-Del	0.87	1
CREBZF	CUL4B	0.87	1
CREBZF	DNMT3A	0.87	1
CREBZF	PDGFRA	0.87	1
CREBZF	SETD2	0.87	1
CREBZF	STK19	0.87	1
CREBZF	Amp_1q22	0.87	1
CREBZF	Del_6q22.31	0.87	1
CUL4B	PTPN11	0.87	1
CUL4B	RBPJ	0.87	1
CUL4B	Del_1q43	0.87	1
DDX5	12q-Del	0.87	1
DDX5	Del_3q13.31	0.87	1
DNMT3A	PTPN11	0.87	1
DNMT3A	RBPJ	0.87	1
DNMT3A	Amp_2p24.3	0.87	1
DNMT3A	Del_1q43	0.87	1
FUBP1	RBPJ	0.87	1
GAGE2A	Del_9p23	0.87	1
HTRA2	12q-Del	0.87	1
IRS4	13q-Del	0.87	1
NEU2	12q-Del	0.87	1
PDGFRA	PTPN11	0.87	1
PDGFRA	Amp_2p24.3	0.87	1
PDGFRA	Del_1q43	0.87	1
PRX	PTPN11	0.87	1
PRX	RBPJ	0.87	1
PRX	Amp_2p24.3	0.87	1
PRX	Del_1q43	0.87	1
PTPN11	SETD2	0.87	1
PTPN11	STK19	0.87	1
PTPN11	13q-Del	0.87	1
PTPN11	Amp_1q22	0.87	1
RBPJ	SETD2	0.87	1
RBPJ	STK19	0.87	1
RBPJ	13q-Del	0.87	1
RBPJ	Amp_1q22	0.87	1
RBPJ	Del_6q22.31	0.87	1
RET	13q-Del	0.87	1
ROBO3	12q-Del	0.87	1
ROBO3	Del_3q13.31	0.87	1
SETD2	Amp_2p24.3	0.87	1
SETD2	Del_1q43	0.87	1
SMOC1	Del_6p25.3	0.87	1
STK19	Del_1q43	0.87	1
TMEM216	Del_6p25.3	0.87	1
ZNF512B	12q-Del	0.87	1
ZNF512B	Del_3q13.31	0.87	1
12q-Del	Del_6q22.31	0.87	1
13q-Del	Amp_2p24.3	0.87	1
13q-Del	Del_3q13.31	0.87	1
Amp_2p24.3	Del_6q22.31	0.87	1
Del_3q13.31	Del_6q22.31	0.87	1
ARID2	7p-Amp	0.871	1
FAM47C	NIPBL	0.871	1
FAM47C	Amp_19p13.2	0.871	1
KRT3	Del_9p23	0.871	1
MYT1	Amp_8q24.13	0.871	1
NAP1L2	Del_9p23	0.871	1
NRAS	Del_9p23	0.871	1
PIK3CA	7p-Amp	0.871	1
PPL	Amp_8q24.13	0.871	1
RBBP6	Amp_8q24.13	0.871	1
SRPX	Del_9p23	0.871	1
TRERF1	Amp_8q24.13	0.871	1
ZNF709	Del_9p23	0.871	1
7p-Amp	Del_7p22.3	0.871	1
Xq-Del	Amp_8q24.13	0.871	1
Amp_19p13.3	Del_Xq21.1	0.871	1
PLXNA3	Amp_10p15.3	0.872	1
SLC6A3	Amp_10p15.3	0.872	1
SMARCA4	Amp_19p13.3	0.872	1
SMARCA4	Del_18q23	0.872	1
10p-Amp	Del_22q13.31	0.872	1
11q-Amp	Del_11p15.5	0.872	1
8q-Amp	22q-Del	0.872	1
18p-Del	Del_6q24.3	0.872	1
22q-Del	Amp_19p13.3	0.872	1
Amp_Xp11.22	Del_12q12	0.872	1
CIB1	Amp_1q32.1	0.873	1
KRT3	Amp_1q32.1	0.873	1
NAP1L2	Amp_1q32.1	0.873	1
NRAS	Amp_1q32.1	0.873	1
RET	Del_10q26.3	0.873	1
ZNF709	Amp_1q32.1	0.873	1
Amp_2p24.3	Del_10q26.3	0.873	1
Amp_7q31.2	Del_3p21.31	0.873	1
Del_6q22.31	Del_13q14.2	0.873	1
11q-Amp	Del_5q34	0.874	1
18p-Del	Amp_10p15.3	0.874	1
Del_4q34.3	Del_19q13.41	0.874	1
DNMT3A	Amp_12p13.32	0.875	1
FAM47C	7q-Amp	0.875	1
KRAS	NF1	0.875	1
KRAS	6q-Del	0.875	1
PDGFRA	Amp_12p13.32	0.875	1
PRX	Amp_12p13.32	0.875	1
SETD2	Amp_12p13.32	0.875	1
10p-Del	Xq-Del	0.875	1
Amp_7q32.3	Del_18q23	0.875	1
BRAF	9p-Del	0.876	1
DDX5	9p-Del	0.876	1
MED9	PIK3R1	0.876	1
NF1	NOTCH1	0.876	1
PIK3R1	TMEM216	0.876	1
ROBO3	9p-Del	0.876	1
TCF12	TP53	0.876	1
9q-Del	Del_2q37.3	0.876	1
ARID2	EMG1	0.877	1
ARID2	Xq-Del	0.877	1
EMG1	NUDT11	0.877	1
EMG1	Amp_13q34	0.877	1
MYST4	Xq-Del	0.877	1
MYT1	Amp_13q34	0.877	1
NUDT11	Xq-Del	0.877	1
PDGFRA	9p-Del	0.877	1
PDGFRA	Del_13q14.2	0.877	1
PPL	Amp_13q34	0.877	1
PPL	Del_7p22.3	0.877	1
PRX	9p-Del	0.877	1
RB1	Amp_13q34	0.877	1
RB1	Del_7p22.3	0.877	1
RBBP6	Amp_13q34	0.877	1
RBBP6	Del_7p22.3	0.877	1
SCN4A	Amp_13q34	0.877	1
SETD2	Del_13q14.2	0.877	1
STK19	9p-Del	0.877	1
TCF12	4p-Del	0.877	1
TRERF1	Amp_13q34	0.877	1
TRERF1	Del_7p22.3	0.877	1
ZBTB20	15q-Del	0.877	1
4p-Del	9q-Del	0.877	1
Xq-Del	Amp_13q34	0.877	1
Amp_12p13.32	Amp_17q25.1	0.877	1
AGBL1	Del_Xq21.1	0.878	1
BRAF	Del_Xq21.1	0.878	1
DDX5	Del_Xq21.1	0.878	1
EGFR	SLC6A3	0.878	1
EGFR	TNRC18	0.878	1
EGFR	ZMIZ1	0.878	1
EGFR	Xp-Del	0.878	1
KRAS	Amp_12p13.32	0.878	1
NEU2	Del_Xq21.1	0.878	1
ROBO3	Del_Xq21.1	0.878	1
ZNF512B	Del_Xq21.1	0.878	1
Amp_7q31.2	Del_7p22.3	0.878	1
Del_3q29	Del_6q24.3	0.878	1
Del_5q34	Del_6q24.3	0.878	1
AGBL1	Del_11p15.5	0.879	1
HTRA2	Del_11p15.5	0.879	1
PLXNA3	Del_19q13.41	0.879	1
9q-Del	Del_19q13.41	0.879	1
Del_5p15.33	Del_Xq21.1	0.879	1
CIB1	11q-Amp	0.88	1
CIB1	Del_8q24.3	0.88	1
KRT3	11q-Amp	0.88	1
KRT3	Del_8q24.3	0.88	1
NAP1L2	11q-Amp	0.88	1
NAP1L2	Del_8q24.3	0.88	1
NOTCH1	Amp_7q31.2	0.88	1
NRAS	11q-Amp	0.88	1
NRAS	Del_8q24.3	0.88	1
NUDT11	Del_1p36.32	0.88	1
SMARCA4	19p-Amp	0.88	1
SMARCA4	Amp_Xp11.22	0.88	1
SRPX	11q-Amp	0.88	1
SRPX	Del_8q24.3	0.88	1
ZNF709	11q-Amp	0.88	1
ZNF709	Del_8q24.3	0.88	1
18q-Del	Amp_7q32.3	0.88	1
22q-Del	Amp_3q26.33	0.88	1
22q-Del	Amp_Xp11.22	0.88	1
CUL4B	Del_11p15.5	0.881	1
DNMT3A	Del_11p15.5	0.881	1
EGFR	FAM47C	0.881	1
EGFR	NIPBL	0.881	1
GAGE2A	Del_22q13.31	0.881	1
MED9	ZBTB20	0.881	1
MED9	4p-Del	0.881	1
PDGFRA	Del_11p15.5	0.881	1
PRX	Del_11p15.5	0.881	1
SMOC1	ZBTB20	0.881	1
TMEM216	ZBTB20	0.881	1
Amp_Xp11.22	Del_9p23	0.881	1
Del_1p32.3	Del_4q34.3	0.881	1
ANKRD36	PLXNA3	0.882	1
ANKRD36	SLC6A3	0.882	1
ANKRD36	TNRC18	0.882	1
ANKRD36	ZMIZ1	0.882	1
ANKRD36	Xp-Del	0.882	1
ARID1A	NF1	0.882	1
ARID2	4q-Del	0.882	1
ARID2	Amp_11q24.1	0.882	1
CREBZF	PLXNA3	0.882	1
CREBZF	SLC6A3	0.882	1
CREBZF	TNRC18	0.882	1
CREBZF	ZMIZ1	0.882	1
CREBZF	Xp-Del	0.882	1
IRS4	Amp_7q31.2	0.882	1
MYST4	18p-Del	0.882	1
MYST4	4q-Del	0.882	1
MYST4	Amp_11q24.1	0.882	1
NOTCH1	15q-Del	0.882	1
NUDT11	4q-Del	0.882	1
PIK3R1	12q-Del	0.882	1
PLXNA3	PTPN11	0.882	1
PLXNA3	RBPJ	0.882	1
PLXNA3	Amp_2p24.3	0.882	1
PLXNA3	Del_1q43	0.882	1
PTPN11	SLC6A3	0.882	1
PTPN11	TNRC18	0.882	1
PTPN11	ZMIZ1	0.882	1
PTPN11	Xp-Del	0.882	1
RBPJ	SLC6A3	0.882	1
RBPJ	TNRC18	0.882	1
RBPJ	ZMIZ1	0.882	1
RBPJ	Xp-Del	0.882	1
RBPJ	Amp_7q31.2	0.882	1
RET	Xp-Del	0.882	1
SLC6A3	Amp_2p24.3	0.882	1
SLC6A3	Del_1q43	0.882	1
TNRC18	Amp_2p24.3	0.882	1
TNRC18	Del_1q43	0.882	1
ZMIZ1	Amp_2p24.3	0.882	1
ZMIZ1	Del_1q43	0.882	1
18p-Del	Amp_13q34	0.882	1
4q-Del	Del_7p22.3	0.882	1
Xp-Del	Amp_2p24.3	0.882	1
Amp_11q24.1	Del_7p22.3	0.882	1
FAM47C	Amp_1q32.1	0.883	1
NIPBL	Amp_1q32.1	0.883	1
PTEN	SMARCA4	0.883	1
PTEN	18q-Del	0.883	1
SMARCA4	Del_3p21.31	0.883	1
18q-Del	Del_3p21.31	0.883	1
22q-Del	Amp_12q14.1	0.883	1
ARID1A	Del_8q24.3	0.884	1
IDH1	15q-Del	0.884	1
IRS4	PIK3CA	0.884	1
PIK3CA	PTPN11	0.884	1
PIK3CA	RET	0.884	1
ROBO3	Del_19q13.42	0.884	1
Del_8q24.3	Del_18q23	0.884	1
CIC	MED9	0.885	1
CIC	TMEM216	0.885	1
CUL4B	Amp_7q32.3	0.885	1
EGFR	Del_6q24.3	0.885	1
IDH1	ZBTB20	0.885	1
PRX	Amp_7q32.3	0.885	1
7p-Amp	Amp_10p15.3	0.885	1
9p-Del	Del_12q12	0.885	1
Amp_19p13.3	Del_22q13.31	0.885	1
Del_1q43	Del_19q13.41	0.885	1
Del_6p25.3	Del_12q12	0.885	1
SMOC1	TP53	0.886	1
TMEM216	TP53	0.886	1
10q-Del	Amp_13q34	0.886	1
Del_10q26.3	Del_12q12	0.886	1
AGBL1	Amp_3q26.33	0.887	1
BRAF	19p-Amp	0.887	1
BRAF	Amp_3q26.33	0.887	1
BRAF	Amp_Xp11.22	0.887	1
CIB1	TCF12	0.887	1
CIB1	7q-Amp	0.887	1
CIB1	9q-Del	0.887	1
CIB1	Amp_7p11.2	0.887	1
CIC	PPL	0.887	1
CUL4B	EMG1	0.887	1
CUL4B	Xq-Del	0.887	1
DDX5	19p-Amp	0.887	1
DDX5	Amp_3q26.33	0.887	1
DDX5	Amp_Xp11.22	0.887	1
DNMT3A	EMG1	0.887	1
EMG1	PDGFRA	0.887	1
EMG1	PRX	0.887	1
EMG1	SETD2	0.887	1
EMG1	STK19	0.887	1
EMG1	Amp_1q22	0.887	1
HTRA2	19p-Amp	0.887	1
HTRA2	Amp_3q26.33	0.887	1
HTRA2	Amp_Xp11.22	0.887	1
IDH2	MED9	0.887	1
IDH2	SMOC1	0.887	1
KRT3	TCF12	0.887	1
KRT3	15q-Del	0.887	1
KRT3	9q-Del	0.887	1
KRT3	Amp_7p11.2	0.887	1
MED9	Amp_17q25.1	0.887	1
MED9	Del_3q29	0.887	1
MED9	Del_5q34	0.887	1
MYT1	Amp_1q22	0.887	1
NAP1L2	TCF12	0.887	1
NAP1L2	9q-Del	0.887	1
NEU2	19p-Amp	0.887	1
NEU2	Amp_3q26.33	0.887	1
NEU2	Amp_Xp11.22	0.887	1
NRAS	TCF12	0.887	1
NRAS	15q-Del	0.887	1
NRAS	9q-Del	0.887	1
PDGFRA	Xq-Del	0.887	1
PIK3R1	18p-Del	0.887	1
PPL	Amp_1q22	0.887	1
PRX	Xq-Del	0.887	1
RB1	Amp_1q22	0.887	1
ROBO3	19p-Amp	0.887	1
ROBO3	Amp_Xp11.22	0.887	1
SCN4A	Amp_1q22	0.887	1
SETD2	Xq-Del	0.887	1
SMOC1	Amp_17q25.1	0.887	1
SMOC1	Del_3q29	0.887	1
SMOC1	Del_5q34	0.887	1
SRPX	TCF12	0.887	1
SRPX	7q-Amp	0.887	1
SRPX	15q-Del	0.887	1
SRPX	9q-Del	0.887	1
STK19	Xq-Del	0.887	1
TCF12	ZNF709	0.887	1
TMEM216	Del_3q29	0.887	1
TMEM216	Del_5q34	0.887	1
TP53	Del_4q34.3	0.887	1
TRERF1	Amp_1q22	0.887	1
ZNF512B	19p-Amp	0.887	1
ZNF512B	Amp_3q26.33	0.887	1
ZNF512B	Amp_Xp11.22	0.887	1
ZNF709	15q-Del	0.887	1
ZNF709	9q-Del	0.887	1
8q-Amp	Amp_3q26.33	0.887	1
15q-Del	Del_5q34	0.887	1
9q-Del	Amp_17q25.1	0.887	1
Xq-Del	Amp_1q22	0.887	1
Amp_8q24.13	Del_22q13.31	0.887	1
NF1	9p-Del	0.888	1
PIK3CA	PIK3R1	0.888	1
IRS4	Del_2q37.3	0.889	1
KRAS	Del_1p36.32	0.889	1
NUDT11	Del_12q12	0.889	1
PIK3CA	12q-Del	0.889	1
15q-Del	9p-Del	0.889	1
15q-Del	Del_13q14.2	0.889	1
19q-Del	Del_7p22.3	0.889	1
Del_1q43	Del_2q37.3	0.889	1
Del_4q34.3	Del_5p15.33	0.889	1
NAP1L2	Del_1p36.32	0.89	1
NF1	SLC6A3	0.89	1
NF1	Xp-Del	0.89	1
PLXNA3	6q-Del	0.89	1
SRPX	Del_1p36.32	0.89	1
ZMIZ1	6q-Del	0.89	1
CIB1	Del_1p32.3	0.891	1
KRAS	Del_1p32.3	0.891	1
NAP1L2	Del_1p32.3	0.891	1
NUDT11	Del_4q34.3	0.891	1
PLXNA3	1p-Del	0.891	1
SCN4A	Del_6q24.3	0.891	1
SRPX	Del_1p32.3	0.891	1
12q-Del	4p-Del	0.891	1
13q-Del	Del_Xq21.1	0.891	1
4p-Del	Del_3q13.31	0.891	1
ARID1A	MED9	0.892	1
ARID1A	SMOC1	0.892	1
ARID1A	TMEM216	0.892	1
ATRX	Del_8q24.3	0.892	1
BRAF	7p-Amp	0.892	1
DDX5	7p-Amp	0.892	1
HTRA2	7p-Amp	0.892	1
MED9	Amp_4q12	0.892	1
NRAS	Del_14q24.3	0.892	1
SMOC1	Amp_4q12	0.892	1
TMEM216	Amp_4q12	0.892	1
ZNF512B	7p-Amp	0.892	1
KRAS	19q-Del	0.893	1
KRAS	4q-Del	0.893	1
NOTCH1	RET	0.893	1
NOTCH1	Amp_2p24.3	0.893	1
NOTCH1	Del_1q43	0.893	1
CIB1	12q-Del	0.894	1
CIB1	Del_3q13.31	0.894	1
KRT3	12q-Del	0.894	1
KRT3	Del_3q13.31	0.894	1
NAP1L2	12q-Del	0.894	1
NAP1L2	Del_3q13.31	0.894	1
NRAS	12q-Del	0.894	1
NRAS	Del_3q13.31	0.894	1
SRPX	12q-Del	0.894	1
SRPX	Del_3q13.31	0.894	1
ZNF709	12q-Del	0.894	1
ZNF709	Del_3q13.31	0.894	1
10p-Amp	Del_6p25.3	0.894	1
8q-Amp	Del_3p21.31	0.894	1
8q-Amp	Del_5p15.33	0.894	1
12q-Del	Del_2q37.3	0.894	1
19q-Del	Del_4q34.3	0.894	1
4q-Del	Del_14q24.3	0.894	1
Amp_19p13.3	Del_5p15.33	0.894	1
Amp_19p13.3	Del_19q13.41	0.894	1
ANKRD36	GAGE2A	0.895	1
CIB1	19q-Del	0.895	1
CREBZF	GAGE2A	0.895	1
GAGE2A	IRS4	0.895	1
GAGE2A	PTPN11	0.895	1
GAGE2A	RBPJ	0.895	1
GAGE2A	RET	0.895	1
GAGE2A	Amp_2p24.3	0.895	1
GAGE2A	Del_1q43	0.895	1
MYST4	Amp_8q24.13	0.895	1
NAP1L2	19q-Del	0.895	1
NRAS	19q-Del	0.895	1
NUDT11	Amp_8q24.13	0.895	1
SRPX	19q-Del	0.895	1
19p-Amp	Del_5p15.33	0.895	1
Amp_3q26.33	Del_5p15.33	0.895	1
AGBL1	ARID2	0.896	1
AGBL1	MYST4	0.896	1
AGBL1	NUDT11	0.896	1
AGBL1	Amp_13q34	0.896	1
AGBL1	Del_7p22.3	0.896	1
ARID2	HTRA2	0.896	1
ARID2	NEU2	0.896	1
ARID2	ROBO3	0.896	1
ARID2	SMARCA4	0.896	1
ARID2	10p-Amp	0.896	1
ARID2	22q-Del	0.896	1
BRAF	Amp_13q34	0.896	1
BRAF	Del_7p22.3	0.896	1
DDX5	Amp_13q34	0.896	1
DDX5	Del_7p22.3	0.896	1
FAM47C	Del_1p36.32	0.896	1
FUBP1	4q-Del	0.896	1
GAGE2A	Amp_10p15.3	0.896	1
HTRA2	MYST4	0.896	1
HTRA2	NUDT11	0.896	1
HTRA2	Amp_13q34	0.896	1
MYST4	NEU2	0.896	1
MYST4	ROBO3	0.896	1
MYST4	SMARCA4	0.896	1
MYST4	18q-Del	0.896	1
NEU2	Amp_13q34	0.896	1
NUDT11	ROBO3	0.896	1
NUDT11	10p-Amp	0.896	1
PLXNA3	Amp_12p13.32	0.896	1
ROBO3	Amp_13q34	0.896	1
TNRC18	Amp_12p13.32	0.896	1
ZNF512B	Amp_13q34	0.896	1
ZNF512B	Del_7p22.3	0.896	1
10p-Amp	Amp_13q34	0.896	1
18q-Del	Amp_13q34	0.896	1
22q-Del	Del_7p22.3	0.896	1
Xp-Del	Amp_12p13.32	0.896	1
ARID1A	TCF12	0.897	1
ATRX	Del_13q14.2	0.897	1
FAM47C	NF1	0.897	1
KRAS	Del_12q12	0.897	1
NF1	NIPBL	0.897	1
TCF12	Amp_4q12	0.897	1
1p-Del	Del_4q34.3	0.897	1
DNMT3A	7p-Amp	0.898	1
EMG1	PLXNA3	0.898	1
EMG1	SLC6A3	0.898	1
EMG1	TNRC18	0.898	1
EMG1	Xp-Del	0.898	1
FAM47C	MED9	0.898	1
FAM47C	SMOC1	0.898	1
FAM47C	TMEM216	0.898	1
MED9	NIPBL	0.898	1
MED9	Amp_19p13.2	0.898	1
MYT1	Xp-Del	0.898	1
MYT1	Del_11p15.1	0.898	1
NIPBL	SMOC1	0.898	1
NIPBL	TMEM216	0.898	1
PLXNA3	Xq-Del	0.898	1
PPL	Xp-Del	0.898	1
PRX	7p-Amp	0.898	1
RB1	Xp-Del	0.898	1
RBBP6	Xp-Del	0.898	1
RBBP6	Del_11p15.1	0.898	1
ROBO3	Del_19q13.41	0.898	1
SCN4A	Xp-Del	0.898	1
SETD2	7p-Amp	0.898	1
SLC6A3	Xq-Del	0.898	1
SMOC1	Amp_7q32.3	0.898	1
SMOC1	Amp_19p13.2	0.898	1
STK19	7p-Amp	0.898	1
TMEM216	Amp_7q32.3	0.898	1
TMEM216	Amp_19p13.2	0.898	1
TNRC18	Xq-Del	0.898	1
ZMIZ1	Xq-Del	0.898	1
13q-Del	Amp_17q25.1	0.898	1
Xq-Del	Del_11p15.1	0.898	1
Amp_12q14.1	Del_22q13.31	0.898	1
ZBTB20	4q-Del	0.899	1
CIC	ZMIZ1	0.9	1
CUL4B	18p-Del	0.9	1
DNMT3A	18p-Del	0.9	1
PDGFRA	4q-Del	0.9	1
PRX	4q-Del	0.9	1
STK19	18p-Del	0.9	1
10p-Del	Amp_13q34	0.9	1
12q-Del	Del_3q29	0.9	1
4p-Del	Amp_7q32.3	0.9	1
4q-Del	Amp_1q22	0.9	1
Amp_1q22	Amp_11q24.1	0.9	1
CIC	11q-Amp	0.901	1
CUL4B	Del_10q26.3	0.901	1
EMG1	Del_1p36.32	0.901	1
FAM47C	Del_19q13.42	0.901	1
KRAS	SMARCA4	0.901	1
KRAS	10p-Amp	0.901	1
KRAS	22q-Del	0.901	1
PRX	Del_10q26.3	0.901	1
SCN4A	Del_1p36.32	0.901	1
SMARCA4	9p-Del	0.901	1
18q-Del	Del_6q24.3	0.901	1
9q-Del	Del_22q13.31	0.901	1
Amp_1q22	Del_10q26.3	0.901	1
ANKRD36	14q-Del	0.902	1
BRAF	10q-Del	0.902	1
CIB1	Del_Xq21.1	0.902	1
EMG1	FUBP1	0.902	1
EMG1	13q-Del	0.902	1
FUBP1	MYT1	0.902	1
FUBP1	RB1	0.902	1
FUBP1	TRERF1	0.902	1
IRS4	14q-Del	0.902	1
KRT3	Del_Xq21.1	0.902	1
MYT1	13q-Del	0.902	1
NAP1L2	Del_Xq21.1	0.902	1
NF1	18p-Del	0.902	1
NRAS	Del_Xq21.1	0.902	1
RB1	Del_6q22.31	0.902	1
SCN4A	Del_6q22.31	0.902	1
SRPX	Del_Xq21.1	0.902	1
ZNF709	Del_Xq21.1	0.902	1
13q-Del	Xq-Del	0.902	1
14q-Del	Del_1q43	0.902	1
Del_2q37.3	Del_22q13.31	0.902	1
EMG1	Del_1p32.3	0.903	1
MED9	Amp_1q32.1	0.903	1
NUDT11	8q-Amp	0.903	1
NUDT11	Amp_19p13.3	0.903	1
SCN4A	Del_1p32.3	0.903	1
SMOC1	Amp_1q32.1	0.903	1
TMEM216	Amp_1q32.1	0.903	1
11q-Amp	Del_19q13.42	0.903	1
7p-Amp	Amp_11q24.1	0.903	1
8q-Amp	Amp_13q34	0.903	1
9p-Del	Amp_17q25.1	0.903	1
Amp_12q14.1	Del_5p15.33	0.903	1
Del_3p21.31	Del_5p15.33	0.903	1
KRAS	8q-Amp	0.904	1
KRAS	1p-Del	0.904	1
KRAS	Amp_19p13.3	0.904	1
PPL	TP53	0.904	1
TP53	Xq-Del	0.904	1
ZBTB20	Del_Xq21.1	0.904	1
8q-Amp	Del_6p25.3	0.904	1
4p-Del	Del_Xq21.1	0.904	1
AGBL1	CUL4B	0.905	1
AGBL1	DNMT3A	0.905	1
AGBL1	PDGFRA	0.905	1
AGBL1	PRX	0.905	1
AGBL1	SETD2	0.905	1
AGBL1	STK19	0.905	1
AGBL1	Amp_1q22	0.905	1
AGBL1	Del_4q34.3	0.905	1
BRAF	Amp_1q22	0.905	1
CUL4B	HTRA2	0.905	1
CUL4B	NEU2	0.905	1
CUL4B	ROBO3	0.905	1
DDX5	Amp_1q22	0.905	1
DDX5	Del_4q34.3	0.905	1
DNMT3A	HTRA2	0.905	1
DNMT3A	NEU2	0.905	1
DNMT3A	ROBO3	0.905	1
HTRA2	PDGFRA	0.905	1
HTRA2	PRX	0.905	1
HTRA2	SETD2	0.905	1
HTRA2	Amp_1q22	0.905	1
HTRA2	Del_4q34.3	0.905	1
MYT1	Amp_7q32.3	0.905	1
NEU2	PDGFRA	0.905	1
NEU2	STK19	0.905	1
NEU2	Amp_1q22	0.905	1
PDGFRA	ROBO3	0.905	1
PRX	ROBO3	0.905	1
RB1	Amp_7q32.3	0.905	1
RBBP6	Amp_7q32.3	0.905	1
ROBO3	SETD2	0.905	1
ROBO3	Amp_1q22	0.905	1
SLC6A3	Del_13q14.2	0.905	1
ZMIZ1	Del_13q14.2	0.905	1
ZNF512B	Amp_1q22	0.905	1
ZNF512B	Del_4q34.3	0.905	1
7q-Amp	Amp_Xp11.22	0.905	1
ANKRD36	Del_18q23	0.906	1
ANKRD36	Del_22q13.31	0.906	1
ATRX	Del_9p23	0.906	1
CREBZF	Del_18q23	0.906	1
FAM47C	19q-Del	0.906	1
IDH1	11q-Amp	0.906	1
IRS4	Del_18q23	0.906	1
IRS4	Del_22q13.31	0.906	1
NIPBL	9q-Del	0.906	1
PTPN11	Del_22q13.31	0.906	1
RBPJ	Del_18q23	0.906	1
RET	Del_18q23	0.906	1
TCF12	Amp_19p13.2	0.906	1
TP53	Del_7p22.3	0.906	1
15q-Del	Amp_19p13.2	0.906	1
Amp_2p24.3	Del_18q23	0.906	1
Amp_3q26.33	Del_11p15.1	0.906	1
ANKRD36	CREBZF	0.907	1
ANKRD36	PTPN11	0.907	1
ANKRD36	RBPJ	0.907	1
ANKRD36	RET	0.907	1
ANKRD36	Amp_2p24.3	0.907	1
ANKRD36	Del_1q43	0.907	1
CREBZF	IRS4	0.907	1
CREBZF	PTPN11	0.907	1
CREBZF	RBPJ	0.907	1
CREBZF	RET	0.907	1
CREBZF	Amp_2p24.3	0.907	1
CREBZF	Del_1q43	0.907	1
CUL4B	Del_12q12	0.907	1
EMG1	19q-Del	0.907	1
IDH1	Amp_11q24.1	0.907	1
IRS4	PTPN11	0.907	1
IRS4	RBPJ	0.907	1
IRS4	Amp_2p24.3	0.907	1
IRS4	Del_1q43	0.907	1
PPL	19q-Del	0.907	1
PTPN11	RBPJ	0.907	1
PTPN11	RET	0.907	1
PTPN11	Amp_2p24.3	0.907	1
PTPN11	Del_1q43	0.907	1
RBPJ	Amp_2p24.3	0.907	1
RBPJ	Del_1q43	0.907	1
RET	Amp_2p24.3	0.907	1
RET	Del_1q43	0.907	1
SCN4A	19q-Del	0.907	1
SETD2	Del_12q12	0.907	1
Amp_2p24.3	Del_1q43	0.907	1
AGBL1	Amp_8q24.13	0.908	1
ATRX	Del_3q29	0.908	1
CREBZF	Del_9p23	0.908	1
DDX5	Amp_8q24.13	0.908	1
HTRA2	Amp_8q24.13	0.908	1
IRS4	Del_9p23	0.908	1
KRAS	PTEN	0.908	1
KRAS	Amp_12q14.1	0.908	1
KRAS	Del_3p21.31	0.908	1
KRAS	Del_5p15.33	0.908	1
MED9	Del_10q26.3	0.908	1
10q-Del	Del_8q24.3	0.908	1
13q-Del	Del_12q12	0.908	1
Amp_2p24.3	Del_9p23	0.908	1
Amp_4q12	Del_3q13.31	0.908	1
CIB1	19p-Amp	0.909	1
CIB1	Amp_3q26.33	0.909	1
EGFR	13q-Del	0.909	1
EMG1	GAGE2A	0.909	1
GAGE2A	MYT1	0.909	1
GAGE2A	PPL	0.909	1
GAGE2A	RB1	0.909	1
GAGE2A	RBBP6	0.909	1
GAGE2A	SCN4A	0.909	1
GAGE2A	TRERF1	0.909	1
GAGE2A	Xq-Del	0.909	1
KRT3	19p-Amp	0.909	1
KRT3	Amp_3q26.33	0.909	1
KRT3	Amp_Xp11.22	0.909	1
MED9	11q-Amp	0.909	1
MED9	Del_8q24.3	0.909	1
NAP1L2	19p-Amp	0.909	1
NAP1L2	Amp_3q26.33	0.909	1
NAP1L2	Amp_Xp11.22	0.909	1
NRAS	19p-Amp	0.909	1
NRAS	Amp_3q26.33	0.909	1
NRAS	Amp_Xp11.22	0.909	1
SMOC1	11q-Amp	0.909	1
SMOC1	Del_8q24.3	0.909	1
SRPX	19p-Amp	0.909	1
SRPX	Amp_3q26.33	0.909	1
SRPX	Amp_Xp11.22	0.909	1
TMEM216	11q-Amp	0.909	1
TMEM216	Del_8q24.3	0.909	1
ZNF709	19p-Amp	0.909	1
ZNF709	Amp_3q26.33	0.909	1
ZNF709	Amp_Xp11.22	0.909	1
Xp-Del	Del_11p15.5	0.909	1
ARID2	PTEN	0.91	1
ARID2	Amp_12q14.1	0.91	1
ARID2	Del_9p23	0.91	1
CIB1	1p-Del	0.91	1
CUL4B	10q-Del	0.91	1
CUL4B	Amp_7q31.2	0.91	1
IDH2	18p-Del	0.91	1
IDH2	4q-Del	0.91	1
IDH2	Amp_11q24.1	0.91	1
IRS4	11p-Del	0.91	1
MYST4	Del_5p15.33	0.91	1
NAP1L2	1p-Del	0.91	1
NUDT11	PTEN	0.91	1
NUDT11	Del_3p21.31	0.91	1
PRX	10q-Del	0.91	1
SRPX	1p-Del	0.91	1
STK19	10q-Del	0.91	1
11p-Del	Amp_2p24.3	0.91	1
11p-Del	Del_1q43	0.91	1
12q-Del	9p-Del	0.91	1
Amp_1q22	Amp_7q31.2	0.91	1
Amp_13q34	Del_5p15.33	0.91	1
Del_3q13.31	Del_13q14.2	0.91	1
BRAF	10p-Del	0.911	1
Amp_Xp11.22	Del_6q22.31	0.911	1
KRAS	Del_6p25.3	0.912	1
ARID1A	FUBP1	0.913	1
CUL4B	SMARCA4	0.913	1
CUL4B	10p-Amp	0.913	1
CUL4B	18q-Del	0.913	1
DNMT3A	SMARCA4	0.913	1
DNMT3A	10p-Amp	0.913	1
DNMT3A	18q-Del	0.913	1
PDGFRA	SMARCA4	0.913	1
PDGFRA	10p-Amp	0.913	1
PIK3CA	PPL	0.913	1
PIK3CA	RB1	0.913	1
PIK3CA	SCN4A	0.913	1
PRX	SMARCA4	0.913	1
PRX	10p-Amp	0.913	1
PRX	22q-Del	0.913	1
SETD2	SMARCA4	0.913	1
SMARCA4	STK19	0.913	1
SMOC1	Amp_7q31.2	0.913	1
STK19	18q-Del	0.913	1
TMEM216	Amp_7q31.2	0.913	1
7p-Amp	9q-Del	0.913	1
Del_3p21.31	Del_6p25.3	0.913	1
Del_4q34.3	Del_8q24.3	0.913	1
Del_5p15.33	Del_6p25.3	0.913	1
MED9	TCF12	0.914	1
MED9	15q-Del	0.914	1
MED9	9q-Del	0.914	1
PDGFRA	Del_4q34.3	0.914	1
SETD2	Del_4q34.3	0.914	1
SMOC1	TCF12	0.914	1
SMOC1	15q-Del	0.914	1
SMOC1	9q-Del	0.914	1
STK19	Del_4q34.3	0.914	1
TCF12	TMEM216	0.914	1
TMEM216	15q-Del	0.914	1
TMEM216	9q-Del	0.914	1
Amp_1q22	Del_4q34.3	0.914	1
Amp_19p13.3	Del_1p36.32	0.914	1
Del_6q24.3	Del_13q14.2	0.914	1
AGBL1	SLC6A3	0.915	1
AGBL1	TNRC18	0.915	1
AGBL1	ZMIZ1	0.915	1
AGBL1	Xp-Del	0.915	1
BRAF	Xp-Del	0.915	1
DDX5	Xp-Del	0.915	1
HTRA2	PLXNA3	0.915	1
HTRA2	SLC6A3	0.915	1
HTRA2	TNRC18	0.915	1
HTRA2	ZMIZ1	0.915	1
NEU2	PLXNA3	0.915	1
NEU2	SLC6A3	0.915	1
NEU2	TNRC18	0.915	1
NEU2	ZMIZ1	0.915	1
NEU2	Xp-Del	0.915	1
NOTCH1	ZBTB20	0.915	1
PLXNA3	ROBO3	0.915	1
ROBO3	SLC6A3	0.915	1
ROBO3	TNRC18	0.915	1
ROBO3	Xp-Del	0.915	1
TCF12	Amp_1q32.1	0.915	1
ZNF512B	Xp-Del	0.915	1
7q-Amp	4p-Del	0.915	1
15q-Del	Amp_1q32.1	0.915	1
ARID2	CIB1	0.916	1
ARID2	KRT3	0.916	1
ARID2	NRAS	0.916	1
ARID2	SRPX	0.916	1
ARID2	ZNF709	0.916	1
ARID2	Del_6p25.3	0.916	1
CIB1	MYST4	0.916	1
CIB1	Amp_13q34	0.916	1
CIB1	Del_7p22.3	0.916	1
EMG1	Del_2q37.3	0.916	1
KRAS	PIK3R1	0.916	1
KRT3	MYST4	0.916	1
KRT3	NUDT11	0.916	1
KRT3	Amp_13q34	0.916	1
MYST4	NAP1L2	0.916	1
MYST4	NRAS	0.916	1
MYST4	SRPX	0.916	1
MYST4	ZNF709	0.916	1
NAP1L2	NUDT11	0.916	1
NAP1L2	Amp_13q34	0.916	1
NAP1L2	Del_7p22.3	0.916	1
NRAS	Amp_13q34	0.916	1
NRAS	Del_7p22.3	0.916	1
NUDT11	SRPX	0.916	1
NUDT11	Del_6p25.3	0.916	1
PIK3R1	14q-Del	0.916	1
RB1	Del_2q37.3	0.916	1
SRPX	Amp_13q34	0.916	1
SRPX	Del_7p22.3	0.916	1
TRERF1	Del_2q37.3	0.916	1
ZNF709	Amp_13q34	0.916	1
ZNF709	Del_7p22.3	0.916	1
Xq-Del	Del_2q37.3	0.916	1
Xq-Del	Del_10q26.3	0.916	1
Del_6p25.3	Del_7p22.3	0.916	1
ARID2	Del_6q24.3	0.917	1
PIK3CA	18p-Del	0.917	1
4p-Del	Amp_Xp11.22	0.917	1
Del_3q29	Del_12q12	0.917	1
CUL4B	Amp_19p13.3	0.918	1
DNMT3A	Amp_8q24.13	0.918	1
DNMT3A	Amp_19p13.3	0.918	1
PLXNA3	18p-Del	0.918	1
PLXNA3	Amp_11q24.1	0.918	1
PRX	8q-Amp	0.918	1
SETD2	Amp_19p13.3	0.918	1
SMOC1	Del_19q13.42	0.918	1
STK19	8q-Amp	0.918	1
STK19	Amp_19p13.3	0.918	1
TNRC18	4q-Del	0.918	1
TNRC18	Amp_11q24.1	0.918	1
8q-Amp	Amp_1q22	0.918	1
Xp-Del	Amp_11q24.1	0.918	1
Amp_1q22	Amp_19p13.3	0.918	1
Amp_8q24.13	Del_8q24.3	0.918	1
CIB1	Del_13q14.2	0.919	1
IRS4	Amp_10p15.3	0.919	1
KRAS	ZBTB20	0.919	1
KRAS	4p-Del	0.919	1
NAP1L2	9p-Del	0.919	1
NRAS	9p-Del	0.919	1
NRAS	Del_13q14.2	0.919	1
RBPJ	Amp_10p15.3	0.919	1
SRPX	9p-Del	0.919	1
11q-Amp	7q-Amp	0.919	1
7q-Amp	Del_8q24.3	0.919	1
Amp_7p11.2	Del_8q24.3	0.919	1
ANKRD36	EMG1	0.92	1
ANKRD36	PPL	0.92	1
ANKRD36	RB1	0.92	1
ANKRD36	RBBP6	0.92	1
ANKRD36	SCN4A	0.92	1
ANKRD36	TRERF1	0.92	1
ANKRD36	Xq-Del	0.92	1
BRAF	Del_9p21.3	0.92	1
CREBZF	EMG1	0.92	1
CREBZF	MYT1	0.92	1
CREBZF	PPL	0.92	1
CREBZF	RB1	0.92	1
CREBZF	RBBP6	0.92	1
CREBZF	SCN4A	0.92	1
CREBZF	TRERF1	0.92	1
CREBZF	Xq-Del	0.92	1
EMG1	IRS4	0.92	1
EMG1	NOTCH1	0.92	1
EMG1	PTPN11	0.92	1
EMG1	RBPJ	0.92	1
EMG1	RET	0.92	1
EMG1	Amp_2p24.3	0.92	1
EMG1	Del_1q43	0.92	1
HTRA2	Del_9p21.3	0.92	1
IRS4	Xq-Del	0.92	1
MED9	12q-Del	0.92	1
MED9	Del_3q13.31	0.92	1
MYT1	NOTCH1	0.92	1
MYT1	PTPN11	0.92	1
MYT1	RBPJ	0.92	1
MYT1	Amp_2p24.3	0.92	1
MYT1	Del_1q43	0.92	1
NEU2	Del_9p21.3	0.92	1
NOTCH1	RB1	0.92	1
NOTCH1	RBBP6	0.92	1
NOTCH1	TRERF1	0.92	1
PPL	RBPJ	0.92	1
PPL	Amp_2p24.3	0.92	1
PPL	Del_1q43	0.92	1
PTPN11	RB1	0.92	1
PTPN11	RBBP6	0.92	1
PTPN11	SCN4A	0.92	1
PTPN11	TRERF1	0.92	1
PTPN11	Xq-Del	0.92	1
RB1	RBPJ	0.92	1
RB1	Amp_2p24.3	0.92	1
RB1	Del_1q43	0.92	1
RBBP6	RBPJ	0.92	1
RBBP6	Amp_2p24.3	0.92	1
RBBP6	Del_1q43	0.92	1
RBPJ	SCN4A	0.92	1
RBPJ	TRERF1	0.92	1
RBPJ	Xq-Del	0.92	1
RET	Xq-Del	0.92	1
SCN4A	Del_1q43	0.92	1
SMOC1	12q-Del	0.92	1
SMOC1	Del_3q13.31	0.92	1
TMEM216	Del_3q13.31	0.92	1
TRERF1	Amp_2p24.3	0.92	1
TRERF1	Del_1q43	0.92	1
Xq-Del	Amp_2p24.3	0.92	1
Del_2q37.3	Del_13q14.2	0.92	1
Del_9p23	Del_11p15.5	0.92	1
ARID1A	18p-Del	0.921	1
ARID1A	4q-Del	0.921	1
ATRX	SLC6A3	0.921	1
CIB1	Del_11p15.5	0.921	1
CUL4B	10p-Del	0.921	1
FAM47C	Del_11p15.1	0.921	1
KRT3	Del_11p15.5	0.921	1
NF1	18q-Del	0.921	1
NRAS	Del_11p15.5	0.921	1
PRX	10p-Del	0.921	1
SRPX	Del_11p15.5	0.921	1
STK19	10p-Del	0.921	1
Amp_7q32.3	Amp_17q25.1	0.921	1
NEU2	Del_6q24.3	0.922	1
NF1	Del_8q24.3	0.922	1
PIK3R1	Del_18q23	0.922	1
PLXNA3	7p-Amp	0.922	1
ROBO3	Del_6q24.3	0.922	1
TNRC18	7p-Amp	0.922	1
ZMIZ1	7p-Amp	0.922	1
ZNF512B	Del_6q24.3	0.922	1
ANKRD36	EGFR	0.923	1
EGFR	IRS4	0.923	1
EGFR	RBPJ	0.923	1
EMG1	1p-Del	0.923	1
FAM47C	Del_19q13.41	0.923	1
IDH2	KRAS	0.923	1
KRAS	Amp_17q25.1	0.923	1
KRAS	Del_3q29	0.923	1
KRAS	Del_5q34	0.923	1
MYST4	PIK3R1	0.923	1
MYT1	Amp_7q31.2	0.923	1
PIK3R1	Amp_13q34	0.923	1
RB1	Amp_7q31.2	0.923	1
SCN4A	1p-Del	0.923	1
TRERF1	Amp_7q31.2	0.923	1
ZBTB20	Amp_19p13.3	0.923	1
11q-Amp	Del_19q13.41	0.923	1
8q-Amp	4p-Del	0.923	1
19q-Del	9q-Del	0.923	1
AGBL1	GAGE2A	0.924	1
BRAF	GAGE2A	0.924	1
CIB1	CUL4B	0.924	1
CIB1	DNMT3A	0.924	1
CIB1	PDGFRA	0.924	1
CIB1	PRX	0.924	1
CIB1	SETD2	0.924	1
CIB1	STK19	0.924	1
CIB1	Amp_1q22	0.924	1
CUL4B	KRT3	0.924	1
CUL4B	NAP1L2	0.924	1
CUL4B	NRAS	0.924	1
CUL4B	SRPX	0.924	1
CUL4B	ZNF709	0.924	1
DDX5	GAGE2A	0.924	1
DNMT3A	KRT3	0.924	1
DNMT3A	NRAS	0.924	1
DNMT3A	PTEN	0.924	1
DNMT3A	SRPX	0.924	1
DNMT3A	ZNF709	0.924	1
EGFR	15q-Del	0.924	1
EGFR	9q-Del	0.924	1
GAGE2A	HTRA2	0.924	1
GAGE2A	NEU2	0.924	1
GAGE2A	ROBO3	0.924	1
GAGE2A	ZNF512B	0.924	1
IRS4	7q-Amp	0.924	1
KRT3	PDGFRA	0.924	1
KRT3	PRX	0.924	1
KRT3	SETD2	0.924	1
KRT3	STK19	0.924	1
KRT3	Amp_1q22	0.924	1
NAP1L2	PDGFRA	0.924	1
NAP1L2	PRX	0.924	1
NAP1L2	SETD2	0.924	1
NAP1L2	STK19	0.924	1
NAP1L2	Amp_1q22	0.924	1
NRAS	PDGFRA	0.924	1
NRAS	SETD2	0.924	1
NRAS	STK19	0.924	1
NRAS	Amp_1q22	0.924	1
PDGFRA	PTEN	0.924	1
PDGFRA	SRPX	0.924	1
PDGFRA	ZNF709	0.924	1
PDGFRA	Del_5p15.33	0.924	1
PRX	SRPX	0.924	1
PRX	ZNF709	0.924	1
PRX	Del_3p21.31	0.924	1
PRX	Del_5p15.33	0.924	1
PTEN	SETD2	0.924	1
RBPJ	7q-Amp	0.924	1
RBPJ	Amp_7p11.2	0.924	1
RET	Amp_7p11.2	0.924	1
SETD2	SRPX	0.924	1
SETD2	ZNF709	0.924	1
SETD2	Amp_12q14.1	0.924	1
SRPX	STK19	0.924	1
STK19	ZNF709	0.924	1
STK19	Amp_12q14.1	0.924	1
STK19	Del_3p21.31	0.924	1
TCF12	11q-Amp	0.924	1
ZNF709	Amp_1q22	0.924	1
11q-Amp	15q-Del	0.924	1
19p-Amp	Del_3q29	0.924	1
7q-Amp	Amp_2p24.3	0.924	1
18q-Del	Del_14q24.3	0.924	1
Amp_1q22	Amp_12q14.1	0.924	1
Amp_3q26.33	Amp_17q25.1	0.924	1
Amp_3q26.33	Del_5q34	0.924	1
Amp_Xp11.22	Del_3q29	0.924	1
IDH2	18q-Del	0.925	1
MED9	Del_Xq21.1	0.925	1
PTEN	Del_6q24.3	0.925	1
SLC6A3	TP53	0.925	1
SMARCA4	Amp_17q25.1	0.925	1
SMOC1	Del_Xq21.1	0.925	1
TMEM216	Del_Xq21.1	0.925	1
12q-Del	Amp_1q32.1	0.925	1
Del_1p36.32	Del_4q34.3	0.925	1
CIC	9q-Del	0.926	1
FAM47C	FUBP1	0.926	1
FUBP1	NIPBL	0.926	1
TRERF1	14q-Del	0.926	1
14q-Del	Xq-Del	0.926	1
ARID1A	KRAS	0.927	1
ATRX	DDX5	0.927	1
KRAS	Amp_4q12	0.927	1
SMOC1	Del_19q13.41	0.927	1
7p-Amp	Amp_17q25.1	0.927	1
7p-Amp	Del_3q29	0.927	1
14q-Del	Del_18q23	0.927	1
Amp_8q24.13	Del_13q14.2	0.927	1
AGBL1	Del_11p15.1	0.928	1
ARID2	FUBP1	0.928	1
ARID2	Del_6q22.31	0.928	1
ATRX	10p-Amp	0.928	1
FUBP1	MYST4	0.928	1
FUBP1	NUDT11	0.928	1
FUBP1	Del_7p22.3	0.928	1
HTRA2	Del_11p15.1	0.928	1
MYST4	13q-Del	0.928	1
PIK3CA	Amp_4q12	0.928	1
PLXNA3	SMARCA4	0.928	1
PLXNA3	18q-Del	0.928	1
SLC6A3	10p-Amp	0.928	1
SMARCA4	TNRC18	0.928	1
SMARCA4	ZMIZ1	0.928	1
SMOC1	Del_9p23	0.928	1
7q-Amp	Amp_13q34	0.928	1
18q-Del	Xp-Del	0.928	1
22q-Del	Xp-Del	0.928	1
9p-Del	Amp_10p15.3	0.928	1
ANKRD36	Del_14q24.3	0.929	1
ARID2	ZBTB20	0.929	1
IRS4	Del_14q24.3	0.929	1
NUDT11	ZBTB20	0.929	1
PTEN	Del_13q14.2	0.929	1
14q-Del	Del_1p32.3	0.929	1
4p-Del	Del_7p22.3	0.929	1
Amp_12q14.1	Del_13q14.2	0.929	1
ANKRD36	6q-Del	0.93	1
CIB1	7p-Amp	0.93	1
CREBZF	6q-Del	0.93	1
CUL4B	Del_6p25.3	0.93	1
DNMT3A	Del_6p25.3	0.93	1
IRS4	6q-Del	0.93	1
MYT1	Del_22q13.31	0.93	1
NF1	RET	0.93	1
PRX	Del_6p25.3	0.93	1
RB1	Del_18q23	0.93	1
SRPX	7p-Amp	0.93	1
TRERF1	Del_18q23	0.93	1
4p-Del	Del_3p21.31	0.93	1
4p-Del	Del_5p15.33	0.93	1
6q-Del	Amp_2p24.3	0.93	1
Xq-Del	Del_22q13.31	0.93	1
Amp_1q22	Del_6p25.3	0.93	1
Amp_10p15.3	Del_6p25.3	0.93	1
Amp_12q14.1	Del_9p21.3	0.93	1
AGBL1	Del_6q22.31	0.931	1
BRAF	FUBP1	0.931	1
CIB1	PLXNA3	0.931	1
CIB1	SLC6A3	0.931	1
CIB1	TNRC18	0.931	1
CIB1	ZMIZ1	0.931	1
CIB1	Xp-Del	0.931	1
DDX5	FUBP1	0.931	1
EMG1	MYT1	0.931	1
EMG1	PPL	0.931	1
EMG1	RB1	0.931	1
EMG1	RBBP6	0.931	1
EMG1	SCN4A	0.931	1
EMG1	TRERF1	0.931	1
EMG1	Xq-Del	0.931	1
FAM47C	KRAS	0.931	1
FUBP1	ROBO3	0.931	1
GAGE2A	Del_13q14.2	0.931	1
IDH2	7q-Amp	0.931	1
KRAS	NIPBL	0.931	1
KRAS	Amp_19p13.2	0.931	1
KRT3	PLXNA3	0.931	1
KRT3	SLC6A3	0.931	1
KRT3	TNRC18	0.931	1
KRT3	ZMIZ1	0.931	1
KRT3	Xp-Del	0.931	1
MED9	19p-Amp	0.931	1
MED9	Amp_3q26.33	0.931	1
MED9	Amp_Xp11.22	0.931	1
MYT1	Xq-Del	0.931	1
NAP1L2	PLXNA3	0.931	1
NAP1L2	SLC6A3	0.931	1
NAP1L2	TNRC18	0.931	1
NAP1L2	ZMIZ1	0.931	1
NAP1L2	Xp-Del	0.931	1
NEU2	Del_6q22.31	0.931	1
NIPBL	18p-Del	0.931	1
NRAS	PLXNA3	0.931	1
NRAS	SLC6A3	0.931	1
NRAS	TNRC18	0.931	1
NRAS	ZMIZ1	0.931	1
NRAS	Xp-Del	0.931	1
PLXNA3	SRPX	0.931	1
PLXNA3	ZNF709	0.931	1
PPL	Xq-Del	0.931	1
RB1	Xq-Del	0.931	1
RBBP6	Xq-Del	0.931	1
ROBO3	Del_6q22.31	0.931	1
SCN4A	Xq-Del	0.931	1
SLC6A3	SRPX	0.931	1
SLC6A3	ZNF709	0.931	1
SMOC1	19p-Amp	0.931	1
SMOC1	Amp_3q26.33	0.931	1
SRPX	TNRC18	0.931	1
SRPX	ZMIZ1	0.931	1
SRPX	Xp-Del	0.931	1
TMEM216	19p-Amp	0.931	1
TMEM216	Amp_3q26.33	0.931	1
TMEM216	Amp_Xp11.22	0.931	1
TNRC18	ZNF709	0.931	1
TRERF1	Xq-Del	0.931	1
ZMIZ1	ZNF709	0.931	1
ZNF512B	Del_6q22.31	0.931	1
ZNF709	Xp-Del	0.931	1
7q-Amp	Amp_17q25.1	0.931	1
7q-Amp	Del_3q29	0.931	1
4q-Del	Amp_8q24.13	0.931	1
Xp-Del	Del_10q26.3	0.931	1
Amp_4q12	Amp_Xp11.22	0.931	1
Amp_7p11.2	Amp_17q25.1	0.931	1
Amp_10p15.3	Del_3q13.31	0.931	1
IDH2	8q-Amp	0.932	1
NOTCH1	Amp_Xp11.22	0.932	1
TCF12	15q-Del	0.932	1
TCF12	9q-Del	0.932	1
8q-Amp	Del_5q34	0.932	1
15q-Del	9q-Del	0.932	1
4p-Del	Amp_7q31.2	0.932	1
4p-Del	Del_18q23	0.932	1
Amp_19p13.3	Del_3q29	0.932	1
Amp_19p13.3	Del_19q13.42	0.932	1
AGBL1	ANKRD36	0.933	1
AGBL1	CREBZF	0.933	1
AGBL1	IRS4	0.933	1
AGBL1	PTPN11	0.933	1
AGBL1	RET	0.933	1
AGBL1	Amp_2p24.3	0.933	1
AGBL1	Del_1q43	0.933	1
ANKRD36	BRAF	0.933	1
ANKRD36	DDX5	0.933	1
ANKRD36	HTRA2	0.933	1
ANKRD36	NEU2	0.933	1
ANKRD36	ROBO3	0.933	1
BRAF	CREBZF	0.933	1
BRAF	PTPN11	0.933	1
BRAF	RBPJ	0.933	1
BRAF	Amp_2p24.3	0.933	1
BRAF	Del_1q43	0.933	1
CREBZF	DDX5	0.933	1
CREBZF	HTRA2	0.933	1
CREBZF	NEU2	0.933	1
CREBZF	ROBO3	0.933	1
CREBZF	ZNF512B	0.933	1
DDX5	PTPN11	0.933	1
DDX5	RBPJ	0.933	1
DDX5	Amp_2p24.3	0.933	1
DDX5	Del_1q43	0.933	1
HTRA2	IRS4	0.933	1
HTRA2	PTPN11	0.933	1
HTRA2	RET	0.933	1
HTRA2	Amp_2p24.3	0.933	1
HTRA2	Del_1q43	0.933	1
IRS4	NEU2	0.933	1
MYT1	11p-Del	0.933	1
NEU2	PTPN11	0.933	1
NEU2	RBPJ	0.933	1
NEU2	RET	0.933	1
NEU2	Amp_2p24.3	0.933	1
NEU2	Del_1q43	0.933	1
PTPN11	ROBO3	0.933	1
PTPN11	ZNF512B	0.933	1
RBBP6	11p-Del	0.933	1
RBPJ	ROBO3	0.933	1
RBPJ	ZNF512B	0.933	1
RET	ROBO3	0.933	1
ROBO3	Del_1q43	0.933	1
TNRC18	Amp_19p13.3	0.933	1
ZMIZ1	8q-Amp	0.933	1
ZNF512B	Del_1q43	0.933	1
11q-Amp	Del_3q13.31	0.933	1
11p-Del	Xq-Del	0.933	1
ARID1A	SMARCA4	0.934	1
ARID1A	10p-Amp	0.934	1
ARID1A	18q-Del	0.934	1
ATRX	Amp_11q24.1	0.934	1
CIC	ZNF512B	0.934	1
EGFR	6q-Del	0.934	1
IRS4	Amp_12p13.32	0.934	1
KRAS	Amp_1q32.1	0.934	1
15q-Del	6q-Del	0.934	1
ARID2	IDH2	0.935	1
ARID2	Del_5q34	0.935	1
CUL4B	PIK3R1	0.935	1
PDGFRA	PIK3R1	0.935	1
PDGFRA	Del_6q24.3	0.935	1
PIK3R1	SETD2	0.935	1
PIK3R1	STK19	0.935	1
STK19	Del_6q24.3	0.935	1
Amp_1q22	Del_6q24.3	0.935	1
Amp_1q22	Del_9p23	0.935	1
Amp_13q34	Del_5q34	0.935	1
Del_3q29	Del_7p22.3	0.935	1
Del_5q34	Del_7p22.3	0.935	1
ARID1A	Del_19q13.42	0.936	1
KRT3	10q-Del	0.936	1
4p-Del	Amp_8q24.13	0.936	1
Amp_12q14.1	Del_11p15.1	0.936	1
ARID2	MED9	0.937	1
ARID2	SMOC1	0.937	1
ARID2	TMEM216	0.937	1
FAM47C	Del_12q12	0.937	1
MED9	MYST4	0.937	1
MED9	NUDT11	0.937	1
MED9	Amp_13q34	0.937	1
MED9	Del_7p22.3	0.937	1
MYST4	SMOC1	0.937	1
MYST4	TMEM216	0.937	1
NIPBL	19p-Amp	0.937	1
NUDT11	SMOC1	0.937	1
NUDT11	TMEM216	0.937	1
PIK3CA	18q-Del	0.937	1
SMOC1	Amp_13q34	0.937	1
SMOC1	Del_7p22.3	0.937	1
TMEM216	Amp_13q34	0.937	1
TMEM216	Del_7p22.3	0.937	1
TP53	Amp_4q12	0.937	1
ZBTB20	Del_6p25.3	0.937	1
13q-Del	14q-Del	0.937	1
13q-Del	Amp_12p13.32	0.937	1
14q-Del	Amp_17q25.1	0.937	1
14q-Del	Del_5q34	0.937	1
9q-Del	Amp_7p11.2	0.937	1
Amp_8q24.13	Del_4q34.3	0.937	1
ARID1A	NOTCH1	0.938	1
BRAF	PIK3CA	0.938	1
DDX5	PIK3CA	0.938	1
EGFR	Del_13q14.2	0.938	1
GAGE2A	Del_12q12	0.938	1
KRAS	Del_8q24.3	0.938	1
NEU2	PIK3CA	0.938	1
PIK3CA	ZNF512B	0.938	1
PLXNA3	PTEN	0.938	1
PTEN	SLC6A3	0.938	1
PTEN	ZMIZ1	0.938	1
PTEN	Xp-Del	0.938	1
SLC6A3	Del_3p21.31	0.938	1
SMOC1	7q-Amp	0.938	1
TMEM216	7q-Amp	0.938	1
TMEM216	Amp_7p11.2	0.938	1
TNRC18	Del_5p15.33	0.938	1
ZMIZ1	Del_5p15.33	0.938	1
Xp-Del	Amp_8q24.13	0.938	1
Xp-Del	Amp_12q14.1	0.938	1
Xp-Del	Del_3p21.31	0.938	1
Xp-Del	Del_5p15.33	0.938	1
Amp_12q14.1	Amp_17q25.1	0.938	1
Amp_17q25.1	Del_10q26.3	0.938	1
Del_3q29	Del_5p15.33	0.938	1
CIB1	GAGE2A	0.939	1
CIC	NUDT11	0.939	1
EMG1	Amp_10p15.3	0.939	1
GAGE2A	KRT3	0.939	1
GAGE2A	NAP1L2	0.939	1
GAGE2A	NRAS	0.939	1
GAGE2A	SRPX	0.939	1
GAGE2A	ZNF709	0.939	1
KRT3	Del_4q34.3	0.939	1
NRAS	Del_4q34.3	0.939	1
ZNF709	Del_4q34.3	0.939	1
10q-Del	Amp_17q25.1	0.939	1
IDH1	NUDT11	0.94	1
IDH1	Del_7p22.3	0.94	1
PTEN	Del_6q22.31	0.94	1
SETD2	ZBTB20	0.94	1
STK19	ZBTB20	0.94	1
12q-Del	15q-Del	0.94	1
Amp_7q32.3	Del_2q37.3	0.94	1
Del_3p21.31	Del_6q22.31	0.94	1
Del_5p15.33	Del_6q22.31	0.94	1
AGBL1	Del_2q37.3	0.941	1
ARID1A	ARID2	0.941	1
ARID1A	MYST4	0.941	1
ARID1A	NUDT11	0.941	1
ARID1A	Del_7p22.3	0.941	1
ARID2	Amp_4q12	0.941	1
CIB1	Amp_8q24.13	0.941	1
CUL4B	Del_11p15.1	0.941	1
HTRA2	Del_2q37.3	0.941	1
KRT3	Amp_8q24.13	0.941	1
MED9	Del_14q24.3	0.941	1
MYST4	Amp_4q12	0.941	1
NUDT11	Amp_4q12	0.941	1
PDGFRA	Del_11p15.1	0.941	1
RBBP6	Del_19q13.42	0.941	1
SCN4A	Del_19q13.42	0.941	1
TP53	9p-Del	0.941	1
14q-Del	18p-Del	0.941	1
Xq-Del	Del_9p23	0.941	1
Amp_4q12	Amp_13q34	0.941	1
Del_8q24.3	Del_Xq21.1	0.941	1
AGBL1	EMG1	0.942	1
AGBL1	MYT1	0.942	1
AGBL1	PPL	0.942	1
AGBL1	RB1	0.942	1
AGBL1	RBBP6	0.942	1
AGBL1	SCN4A	0.942	1
AGBL1	TRERF1	0.942	1
AGBL1	Xq-Del	0.942	1
BRAF	EMG1	0.942	1
BRAF	Xq-Del	0.942	1
CUL4B	MED9	0.942	1
CUL4B	SMOC1	0.942	1
CUL4B	TMEM216	0.942	1
DDX5	EMG1	0.942	1
DDX5	Xq-Del	0.942	1
DNMT3A	MED9	0.942	1
DNMT3A	SMOC1	0.942	1
DNMT3A	TMEM216	0.942	1
EGFR	MYT1	0.942	1
EGFR	PPL	0.942	1
EGFR	RBBP6	0.942	1
EGFR	SCN4A	0.942	1
EGFR	Xq-Del	0.942	1
EMG1	HTRA2	0.942	1
EMG1	NEU2	0.942	1
EMG1	ROBO3	0.942	1
EMG1	ZNF512B	0.942	1
GAGE2A	22q-Del	0.942	1
HTRA2	MYT1	0.942	1
HTRA2	PPL	0.942	1
HTRA2	RB1	0.942	1
HTRA2	RBBP6	0.942	1
HTRA2	SCN4A	0.942	1
HTRA2	TRERF1	0.942	1
IDH2	Del_18q23	0.942	1
KRAS	TCF12	0.942	1
KRAS	15q-Del	0.942	1
KRAS	9q-Del	0.942	1
MED9	PDGFRA	0.942	1
MED9	PRX	0.942	1
MED9	SETD2	0.942	1
MED9	STK19	0.942	1
MED9	Amp_1q22	0.942	1
MYT1	NEU2	0.942	1
MYT1	ROBO3	0.942	1
NEU2	PPL	0.942	1
NEU2	RB1	0.942	1
NEU2	RBBP6	0.942	1
NEU2	SCN4A	0.942	1
NEU2	TRERF1	0.942	1
NEU2	Xq-Del	0.942	1
NIPBL	SMARCA4	0.942	1
NIPBL	18q-Del	0.942	1
PDGFRA	SMOC1	0.942	1
PDGFRA	TMEM216	0.942	1
PPL	ROBO3	0.942	1
PRX	SMOC1	0.942	1
PRX	TMEM216	0.942	1
RB1	ROBO3	0.942	1
RBBP6	ROBO3	0.942	1
ROBO3	TRERF1	0.942	1
ROBO3	Xq-Del	0.942	1
SETD2	SMOC1	0.942	1
SETD2	TMEM216	0.942	1
SMOC1	STK19	0.942	1
SMOC1	Amp_1q22	0.942	1
TMEM216	Amp_1q22	0.942	1
ZMIZ1	Del_6p25.3	0.942	1
ZNF512B	Xq-Del	0.942	1
7q-Amp	Del_3p21.31	0.942	1
22q-Del	Amp_19p13.2	0.942	1
22q-Del	Del_2q37.3	0.942	1
Amp_7p11.2	Amp_8q24.13	0.942	1
Amp_7p11.2	Del_3p21.31	0.942	1
ARID2	Del_2q37.3	0.943	1
KRT3	10p-Del	0.943	1
BRAF	NOTCH1	0.944	1
CUL4B	FUBP1	0.944	1
DDX5	Amp_7q32.3	0.944	1
FUBP1	PRX	0.944	1
FUBP1	SETD2	0.944	1
HTRA2	Amp_7q32.3	0.944	1
NEU2	NOTCH1	0.944	1
NEU2	Amp_7q32.3	0.944	1
NOTCH1	ZNF512B	0.944	1
PIK3R1	ZBTB20	0.944	1
SETD2	13q-Del	0.944	1
STK19	Del_6q22.31	0.944	1
9q-Del	Amp_7q32.3	0.944	1
Amp_3q26.33	Del_22q13.31	0.944	1
ATRX	SMOC1	0.945	1
IDH1	8q-Amp	0.945	1
Amp_4q12	Amp_7p11.2	0.945	1
Amp_10p15.3	Del_10q26.3	0.945	1
ANKRD36	CIB1	0.946	1
ANKRD36	KRT3	0.946	1
ANKRD36	NAP1L2	0.946	1
ANKRD36	NRAS	0.946	1
ANKRD36	SRPX	0.946	1
ANKRD36	ZNF709	0.946	1
ARID1A	Del_3p21.31	0.946	1
ARID2	FAM47C	0.946	1
ARID2	NIPBL	0.946	1
CIB1	CREBZF	0.946	1
CIB1	IRS4	0.946	1
CIB1	PTPN11	0.946	1
CIB1	RET	0.946	1
CIB1	Amp_2p24.3	0.946	1
CIB1	Del_1q43	0.946	1
CREBZF	KRT3	0.946	1
CREBZF	NAP1L2	0.946	1
CREBZF	NRAS	0.946	1
CREBZF	SRPX	0.946	1
CREBZF	ZNF709	0.946	1
CUL4B	Amp_17q25.1	0.946	1
DNMT3A	IDH2	0.946	1
GAGE2A	Amp_19p13.3	0.946	1
IDH2	STK19	0.946	1
IRS4	KRT3	0.946	1
IRS4	NAP1L2	0.946	1
IRS4	NRAS	0.946	1
IRS4	SRPX	0.946	1
IRS4	ZNF709	0.946	1
KRAS	12q-Del	0.946	1
KRAS	Del_3q13.31	0.946	1
KRT3	PTPN11	0.946	1
KRT3	RBPJ	0.946	1
KRT3	RET	0.946	1
KRT3	Amp_2p24.3	0.946	1
KRT3	Del_1q43	0.946	1
MYST4	NIPBL	0.946	1
NAP1L2	PTPN11	0.946	1
NAP1L2	RET	0.946	1
NAP1L2	Amp_2p24.3	0.946	1
NAP1L2	Del_1q43	0.946	1
NIPBL	Amp_13q34	0.946	1
NRAS	PTPN11	0.946	1
NRAS	RBPJ	0.946	1
NRAS	RET	0.946	1
NRAS	Amp_2p24.3	0.946	1
NRAS	Del_1q43	0.946	1
PDGFRA	Del_3q29	0.946	1
PDGFRA	Del_5q34	0.946	1
PRX	Del_3q29	0.946	1
PTPN11	SRPX	0.946	1
PTPN11	ZNF709	0.946	1
RBPJ	SRPX	0.946	1
RBPJ	ZNF709	0.946	1
RET	SRPX	0.946	1
RET	ZNF709	0.946	1
SETD2	Del_5q34	0.946	1
SMARCA4	Del_4q34.3	0.946	1
SRPX	Amp_2p24.3	0.946	1
SRPX	Del_1q43	0.946	1
STK19	Amp_17q25.1	0.946	1
ZNF709	Amp_2p24.3	0.946	1
ZNF709	Del_1q43	0.946	1
18q-Del	Del_4q34.3	0.946	1
9p-Del	Amp_3q26.33	0.946	1
Amp_1q22	Del_3q29	0.946	1
Amp_3q26.33	Del_13q14.2	0.946	1
Amp_10p15.3	Del_9p23	0.946	1
Amp_13q34	Amp_19p13.2	0.946	1
ANKRD36	TP53	0.947	1
NOTCH1	SMARCA4	0.947	1
PIK3R1	PLXNA3	0.947	1
PIK3R1	SLC6A3	0.947	1
PIK3R1	TNRC18	0.947	1
14q-Del	Del_13q14.2	0.947	1
Amp_1q22	Del_9p21.3	0.947	1
Amp_7q31.2	Amp_17q25.1	0.947	1
Amp_7q31.2	Del_3q29	0.947	1
Amp_8q24.13	Del_3q29	0.947	1
AGBL1	14q-Del	0.948	1
EMG1	NF1	0.948	1
MED9	PLXNA3	0.948	1
MED9	SLC6A3	0.948	1
MED9	TNRC18	0.948	1
MED9	ZMIZ1	0.948	1
MED9	Xp-Del	0.948	1
NF1	PPL	0.948	1
NF1	SCN4A	0.948	1
NF1	TRERF1	0.948	1
NIPBL	NOTCH1	0.948	1
PLXNA3	SMOC1	0.948	1
PLXNA3	TMEM216	0.948	1
RB1	6q-Del	0.948	1
SCN4A	6q-Del	0.948	1
SLC6A3	SMOC1	0.948	1
SLC6A3	TMEM216	0.948	1
SMOC1	TNRC18	0.948	1
SMOC1	ZMIZ1	0.948	1
SMOC1	Xp-Del	0.948	1
TMEM216	TNRC18	0.948	1
TMEM216	ZMIZ1	0.948	1
TMEM216	Xp-Del	0.948	1
9p-Del	Amp_11q24.1	0.948	1
9q-Del	Del_Xq21.1	0.948	1
ATRX	Del_6q24.3	0.949	1
CREBZF	18p-Del	0.949	1
CUL4B	7q-Amp	0.949	1
CUL4B	Amp_7p11.2	0.949	1
IRS4	18p-Del	0.949	1
PRX	Amp_7p11.2	0.949	1
RBPJ	18p-Del	0.949	1
RET	18p-Del	0.949	1
RET	4q-Del	0.949	1
SETD2	Amp_7p11.2	0.949	1
STK19	Amp_7p11.2	0.949	1
11q-Amp	18p-Del	0.949	1
11q-Amp	Amp_Xp11.22	0.949	1
7p-Amp	Del_3p21.31	0.949	1
Amp_2p24.3	Amp_11q24.1	0.949	1
Amp_3q26.33	Del_8q24.3	0.949	1
Amp_11q24.1	Del_1q43	0.949	1
ARID1A	CUL4B	0.95	1
ARID1A	PDGFRA	0.95	1
ARID1A	SETD2	0.95	1
ARID1A	STK19	0.95	1
CREBZF	Del_9p21.3	0.95	1
KRAS	Del_Xq21.1	0.95	1
PRX	Amp_4q12	0.95	1
PTPN11	Del_9p21.3	0.95	1
RBBP6	Del_19q13.41	0.95	1
RBPJ	Del_9p21.3	0.95	1
SCN4A	Del_19q13.41	0.95	1
SETD2	Amp_4q12	0.95	1
SRPX	Del_6q24.3	0.95	1
ZBTB20	4p-Del	0.95	1
10p-Del	Amp_17q25.1	0.95	1
Amp_2p24.3	Del_9p21.3	0.95	1
Del_6q22.31	Del_8q24.3	0.95	1
AGBL1	Del_22q13.31	0.951	1
BRAF	Del_22q13.31	0.951	1
DDX5	Del_22q13.31	0.951	1
HTRA2	Del_22q13.31	0.951	1
MYT1	7q-Amp	0.951	1
MYT1	Amp_7p11.2	0.951	1
MYT1	Amp_12p13.32	0.951	1
PLXNA3	ZBTB20	0.951	1
RB1	7q-Amp	0.951	1
ROBO3	Del_18q23	0.951	1
SLC6A3	ZBTB20	0.951	1
TNRC18	4p-Del	0.951	1
ZBTB20	Xp-Del	0.951	1
7q-Amp	Amp_11q24.1	0.951	1
6q-Del	Del_2q37.3	0.951	1
AGBL1	BRAF	0.952	1
AGBL1	DDX5	0.952	1
AGBL1	HTRA2	0.952	1
AGBL1	NEU2	0.952	1
AGBL1	ROBO3	0.952	1
AGBL1	ZNF512B	0.952	1
ARID1A	Del_6p25.3	0.952	1
ARID1A	Del_19q13.41	0.952	1
BRAF	HTRA2	0.952	1
BRAF	NEU2	0.952	1
BRAF	ROBO3	0.952	1
DDX5	HTRA2	0.952	1
DDX5	NEU2	0.952	1
DDX5	ROBO3	0.952	1
HTRA2	NEU2	0.952	1
HTRA2	ROBO3	0.952	1
HTRA2	ZNF512B	0.952	1
NEU2	ROBO3	0.952	1
NEU2	ZNF512B	0.952	1
PIK3R1	Del_13q14.2	0.952	1
ROBO3	ZNF512B	0.952	1
SMARCA4	Del_9p23	0.952	1
10p-Amp	Del_9p23	0.952	1
11p-Del	4q-Del	0.952	1
Amp_1q32.1	Amp_13q34	0.952	1
Amp_2p24.3	Del_12q12	0.952	1
Amp_4q12	Del_6p25.3	0.952	1
Del_7p22.3	Del_19q13.42	0.952	1
AGBL1	11p-Del	0.953	1
ANKRD36	9p-Del	0.953	1
CUL4B	PIK3CA	0.953	1
DNMT3A	PIK3CA	0.953	1
FAM47C	PTEN	0.953	1
HTRA2	11p-Del	0.953	1
KRAS	19p-Amp	0.953	1
KRAS	Amp_3q26.33	0.953	1
KRAS	Amp_Xp11.22	0.953	1
PIK3CA	PRX	0.953	1
PIK3CA	SETD2	0.953	1
PIK3CA	Del_3p21.31	0.953	1
RBPJ	9p-Del	0.953	1
RBPJ	Del_13q14.2	0.953	1
RET	Del_13q14.2	0.953	1
SMARCA4	4q-Del	0.953	1
SMARCA4	Amp_11q24.1	0.953	1
11q-Amp	Del_1p36.32	0.953	1
18p-Del	22q-Del	0.953	1
18q-Del	4q-Del	0.953	1
18q-Del	Amp_11q24.1	0.953	1
22q-Del	4q-Del	0.953	1
9p-Del	Amp_2p24.3	0.953	1
Amp_10p15.3	Del_22q13.31	0.953	1
Amp_19p13.2	Del_3p21.31	0.953	1
Del_2q37.3	Del_6q24.3	0.953	1
ANKRD36	Del_11p15.5	0.954	1
CIB1	EMG1	0.954	1
CIB1	MYT1	0.954	1
CIB1	PPL	0.954	1
CIB1	RB1	0.954	1
CIB1	RBBP6	0.954	1
CIB1	SCN4A	0.954	1
CIB1	TRERF1	0.954	1
CIB1	Xq-Del	0.954	1
CIB1	Del_11p15.1	0.954	1
EMG1	KRT3	0.954	1
EMG1	NAP1L2	0.954	1
EMG1	NRAS	0.954	1
EMG1	SRPX	0.954	1
EMG1	ZNF709	0.954	1
GAGE2A	MED9	0.954	1
GAGE2A	SMOC1	0.954	1
GAGE2A	TMEM216	0.954	1
GAGE2A	Del_6p25.3	0.954	1
KRT3	MYT1	0.954	1
KRT3	PPL	0.954	1
KRT3	RB1	0.954	1
KRT3	RBBP6	0.954	1
KRT3	SCN4A	0.954	1
KRT3	TRERF1	0.954	1
KRT3	Xq-Del	0.954	1
KRT3	Del_11p15.1	0.954	1
MYT1	NAP1L2	0.954	1
MYT1	NRAS	0.954	1
MYT1	SRPX	0.954	1
MYT1	ZNF709	0.954	1
NAP1L2	PPL	0.954	1
NAP1L2	RB1	0.954	1
NAP1L2	RBBP6	0.954	1
NAP1L2	SCN4A	0.954	1
NAP1L2	TRERF1	0.954	1
NAP1L2	Xq-Del	0.954	1
NOTCH1	Amp_19p13.3	0.954	1
NRAS	PPL	0.954	1
NRAS	RB1	0.954	1
NRAS	RBBP6	0.954	1
NRAS	SCN4A	0.954	1
NRAS	TRERF1	0.954	1
NRAS	Xq-Del	0.954	1
NRAS	Del_11p15.1	0.954	1
PPL	SRPX	0.954	1
PPL	ZNF709	0.954	1
PPL	Del_14q24.3	0.954	1
RB1	SRPX	0.954	1
RB1	ZNF709	0.954	1
RBBP6	SRPX	0.954	1
RBBP6	ZNF709	0.954	1
RBBP6	Del_14q24.3	0.954	1
SCN4A	SRPX	0.954	1
SCN4A	ZNF709	0.954	1
SRPX	TRERF1	0.954	1
SRPX	Xq-Del	0.954	1
SRPX	Del_11p15.1	0.954	1
TRERF1	ZNF709	0.954	1
ZNF709	Xq-Del	0.954	1
11q-Amp	Del_1p32.3	0.954	1
6q-Del	Del_13q14.2	0.954	1
Xq-Del	Del_14q24.3	0.954	1
Amp_10p15.3	Amp_Xp11.22	0.954	1
Del_3q13.31	Del_Xq21.1	0.954	1
Del_12q12	Del_22q13.31	0.954	1
ANKRD36	SMARCA4	0.955	1
ANKRD36	10p-Amp	0.955	1
ANKRD36	22q-Del	0.955	1
CREBZF	18q-Del	0.955	1
CUL4B	FAM47C	0.955	1
CUL4B	NIPBL	0.955	1
DNMT3A	FAM47C	0.955	1
DNMT3A	NIPBL	0.955	1
FAM47C	PDGFRA	0.955	1
FAM47C	PRX	0.955	1
FAM47C	SETD2	0.955	1
FAM47C	STK19	0.955	1
IDH2	TNRC18	0.955	1
IRS4	SMARCA4	0.955	1
IRS4	18q-Del	0.955	1
IRS4	22q-Del	0.955	1
NIPBL	PDGFRA	0.955	1
NIPBL	PRX	0.955	1
NIPBL	SETD2	0.955	1
NIPBL	STK19	0.955	1
PRX	Amp_19p13.2	0.955	1
PTPN11	22q-Del	0.955	1
RBPJ	10p-Amp	0.955	1
RBPJ	18q-Del	0.955	1
RET	SMARCA4	0.955	1
RET	18q-Del	0.955	1
TCF12	Del_19q13.41	0.955	1
TNRC18	Del_5q34	0.955	1
19p-Amp	15q-Del	0.955	1
19p-Amp	9q-Del	0.955	1
15q-Del	Amp_3q26.33	0.955	1
15q-Del	Del_10q26.3	0.955	1
9q-Del	Del_10q26.3	0.955	1
Xp-Del	Del_3q29	0.955	1
Xp-Del	Del_9p23	0.955	1
Amp_1q22	Amp_19p13.2	0.955	1
Amp_10p15.3	Amp_17q25.1	0.955	1
Amp_10p15.3	Del_3q29	0.955	1
DDX5	Amp_7q31.2	0.956	1
FUBP1	KRT3	0.956	1
FUBP1	NRAS	0.956	1
HTRA2	Amp_7q31.2	0.956	1
IDH2	4p-Del	0.956	1
MED9	Del_13q14.2	0.956	1
NEU2	Amp_7q31.2	0.956	1
NRAS	13q-Del	0.956	1
NUDT11	Del_22q13.31	0.956	1
SMOC1	Del_13q14.2	0.956	1
SRPX	Del_6q22.31	0.956	1
TMEM216	9p-Del	0.956	1
TMEM216	Del_13q14.2	0.956	1
14q-Del	18q-Del	0.956	1
4p-Del	Del_5q34	0.956	1
Xp-Del	Del_11p15.1	0.956	1
Amp_1q22	Del_2q37.3	0.956	1
Amp_13q34	Del_18q23	0.956	1
Amp_13q34	Del_22q13.31	0.956	1
Del_7p22.3	Del_22q13.31	0.956	1
ARID1A	PIK3R1	0.957	1
ARID2	KRAS	0.957	1
KRAS	NUDT11	0.957	1
KRAS	Amp_13q34	0.957	1
KRAS	Del_7p22.3	0.957	1
MYST4	11q-Amp	0.957	1
PIK3R1	13q-Del	0.957	1
11q-Amp	Amp_13q34	0.957	1
11q-Amp	Del_7p22.3	0.957	1
18p-Del	9q-Del	0.957	1
9q-Del	Del_11p15.1	0.957	1
Del_7p22.3	Del_8q24.3	0.957	1
ATRX	Del_3q13.31	0.958	1
CREBZF	8q-Amp	0.958	1
DDX5	Amp_10p15.3	0.958	1
FUBP1	PLXNA3	0.958	1
NUDT11	11p-Del	0.958	1
ROBO3	Amp_10p15.3	0.958	1
SLC6A3	13q-Del	0.958	1
SMARCA4	11q-Amp	0.958	1
TP53	Amp_17q25.1	0.958	1
ZMIZ1	13q-Del	0.958	1
11q-Amp	19q-Del	0.958	1
8q-Amp	Amp_2p24.3	0.958	1
11p-Del	Amp_13q34	0.958	1
18p-Del	Del_14q24.3	0.958	1
Amp_19p13.3	Del_1q43	0.958	1
ANKRD36	MED9	0.959	1
ANKRD36	SMOC1	0.959	1
ANKRD36	TMEM216	0.959	1
ARID1A	PLXNA3	0.959	1
ARID1A	SLC6A3	0.959	1
ARID1A	TNRC18	0.959	1
ARID1A	Xp-Del	0.959	1
CREBZF	MED9	0.959	1
CREBZF	SMOC1	0.959	1
CREBZF	TMEM216	0.959	1
IRS4	MED9	0.959	1
IRS4	SMOC1	0.959	1
IRS4	TMEM216	0.959	1
MED9	PTPN11	0.959	1
MED9	RBPJ	0.959	1
MED9	RET	0.959	1
MED9	Amp_2p24.3	0.959	1
MED9	Del_1q43	0.959	1
NOTCH1	PRX	0.959	1
NOTCH1	STK19	0.959	1
PTPN11	SMOC1	0.959	1
PTPN11	TMEM216	0.959	1
RBPJ	SMOC1	0.959	1
RET	SMOC1	0.959	1
RET	TMEM216	0.959	1
SLC6A3	Amp_4q12	0.959	1
SMOC1	Amp_2p24.3	0.959	1
SMOC1	Del_1q43	0.959	1
TMEM216	Amp_2p24.3	0.959	1
TMEM216	Del_1q43	0.959	1
ZMIZ1	Del_1p36.32	0.959	1
8q-Amp	Amp_11q24.1	0.959	1
13q-Del	9q-Del	0.959	1
Amp_8q24.13	Del_Xq21.1	0.959	1
Amp_19p13.2	Del_22q13.31	0.959	1
ARID2	9p-Del	0.96	1
BRAF	EGFR	0.96	1
CUL4B	Amp_1q32.1	0.96	1
DDX5	EGFR	0.96	1
EGFR	ZNF512B	0.96	1
NF1	ZBTB20	0.96	1
NUDT11	9p-Del	0.96	1
PRX	Amp_1q32.1	0.96	1
SETD2	Amp_1q32.1	0.96	1
ZMIZ1	Del_1p32.3	0.96	1
ZMIZ1	Del_19q13.42	0.96	1
Amp_1q32.1	Del_5p15.33	0.96	1
Del_2q37.3	Del_9p21.3	0.96	1
AGBL1	CIB1	0.961	1
AGBL1	KRT3	0.961	1
AGBL1	NAP1L2	0.961	1
AGBL1	NRAS	0.961	1
AGBL1	SRPX	0.961	1
AGBL1	ZNF709	0.961	1
ANKRD36	PTEN	0.961	1
ANKRD36	Del_5p15.33	0.961	1
BRAF	CIB1	0.961	1
BRAF	KRT3	0.961	1
BRAF	NAP1L2	0.961	1
BRAF	NRAS	0.961	1
BRAF	SRPX	0.961	1
BRAF	ZNF709	0.961	1
CIB1	DDX5	0.961	1
CIB1	NEU2	0.961	1
CIB1	ROBO3	0.961	1
CIB1	ZNF512B	0.961	1
CIC	RBPJ	0.961	1
CREBZF	Del_3p21.31	0.961	1
CUL4B	KRAS	0.961	1
DDX5	KRT3	0.961	1
DDX5	NAP1L2	0.961	1
DDX5	NRAS	0.961	1
DDX5	SRPX	0.961	1
DDX5	ZNF709	0.961	1
DNMT3A	KRAS	0.961	1
GAGE2A	ZBTB20	0.961	1
HTRA2	KRT3	0.961	1
HTRA2	NAP1L2	0.961	1
HTRA2	NRAS	0.961	1
HTRA2	SRPX	0.961	1
HTRA2	ZNF709	0.961	1
IRS4	PTEN	0.961	1
IRS4	Del_3p21.31	0.961	1
IRS4	Del_5p15.33	0.961	1
KRAS	PDGFRA	0.961	1
KRAS	PRX	0.961	1
KRAS	SETD2	0.961	1
KRAS	STK19	0.961	1
KRAS	Amp_1q22	0.961	1
KRT3	NEU2	0.961	1
KRT3	ROBO3	0.961	1
KRT3	ZNF512B	0.961	1
NAP1L2	NEU2	0.961	1
NAP1L2	ROBO3	0.961	1
NAP1L2	ZNF512B	0.961	1
NEU2	NRAS	0.961	1
NEU2	SRPX	0.961	1
NEU2	ZNF709	0.961	1
NRAS	ROBO3	0.961	1
NRAS	ZNF512B	0.961	1
PIK3CA	SRPX	0.961	1
PIK3CA	ZNF709	0.961	1
PTPN11	Amp_12q14.1	0.961	1
ROBO3	SRPX	0.961	1
ROBO3	ZNF709	0.961	1
SRPX	ZNF512B	0.961	1
ZNF512B	ZNF709	0.961	1
12q-Del	Amp_3q26.33	0.961	1
12q-Del	Amp_Xp11.22	0.961	1
9q-Del	Amp_7q31.2	0.961	1
Amp_2p24.3	Del_5p15.33	0.961	1
Amp_12q14.1	Del_1q43	0.961	1
Del_1q43	Del_5p15.33	0.961	1
ARID1A	ZBTB20	0.962	1
ARID1A	4p-Del	0.962	1
ARID2	9q-Del	0.962	1
EMG1	Amp_11q24.1	0.962	1
KRT3	Del_9p21.3	0.962	1
MYST4	TCF12	0.962	1
MYT1	4q-Del	0.962	1
NUDT11	Del_11p15.5	0.962	1
PPL	Amp_11q24.1	0.962	1
RB1	18p-Del	0.962	1
RBPJ	7p-Amp	0.962	1
TMEM216	7p-Amp	0.962	1
ZNF709	Del_9p21.3	0.962	1
11q-Amp	Del_2q37.3	0.962	1
15q-Del	Amp_13q34	0.962	1
18p-Del	Xq-Del	0.962	1
4q-Del	Del_11p15.1	0.962	1
9p-Del	Del_4q34.3	0.962	1
9q-Del	Del_7p22.3	0.962	1
Xq-Del	Amp_11q24.1	0.962	1
Amp_12p13.32	Del_13q14.2	0.962	1
Amp_17q25.1	Del_5q34	0.962	1
Del_3q29	Del_5q34	0.962	1
Del_7p22.3	Del_19q13.41	0.962	1
FAM47C	PLXNA3	0.963	1
FAM47C	TNRC18	0.963	1
FAM47C	ZMIZ1	0.963	1
KRT3	Del_2q37.3	0.963	1
MED9	Del_1p36.32	0.963	1
NIPBL	PIK3R1	0.963	1
NIPBL	PLXNA3	0.963	1
NIPBL	SLC6A3	0.963	1
NIPBL	TNRC18	0.963	1
PLXNA3	Amp_19p13.2	0.963	1
TNRC18	Amp_19p13.2	0.963	1
ZMIZ1	Amp_19p13.2	0.963	1
ZNF709	Del_2q37.3	0.963	1
Amp_12q14.1	Del_4q34.3	0.963	1
ARID2	Amp_10p15.3	0.964	1
DDX5	NF1	0.964	1
DNMT3A	11q-Amp	0.964	1
DNMT3A	Del_8q24.3	0.964	1
EMG1	Del_12q12	0.964	1
GAGE2A	IDH2	0.964	1
GAGE2A	Del_5q34	0.964	1
IDH1	Del_Xq21.1	0.964	1
IRS4	Del_6p25.3	0.964	1
MYT1	Del_12q12	0.964	1
NAP1L2	NOTCH1	0.964	1
NF1	ZNF512B	0.964	1
NOTCH1	NRAS	0.964	1
NOTCH1	SRPX	0.964	1
NOTCH1	ZNF709	0.964	1
PDGFRA	Del_8q24.3	0.964	1
PRX	14q-Del	0.964	1
PRX	Del_8q24.3	0.964	1
RBPJ	Del_6p25.3	0.964	1
ROBO3	6q-Del	0.964	1
SETD2	14q-Del	0.964	1
10p-Amp	9p-Del	0.964	1
11p-Del	22q-Del	0.964	1
18q-Del	9q-Del	0.964	1
22q-Del	9q-Del	0.964	1
4q-Del	Del_5p15.33	0.964	1
6q-Del	Amp_3q26.33	0.964	1
Amp_1q22	Del_8q24.3	0.964	1
Amp_2p24.3	Del_6p25.3	0.964	1
Amp_10p15.3	Amp_13q34	0.964	1
EMG1	MED9	0.965	1
EMG1	SMOC1	0.965	1
EMG1	TMEM216	0.965	1
FUBP1	ZBTB20	0.965	1
KRAS	SLC6A3	0.965	1
KRAS	TNRC18	0.965	1
KRAS	Xp-Del	0.965	1
MED9	MYT1	0.965	1
MED9	PPL	0.965	1
MED9	RB1	0.965	1
MED9	RBBP6	0.965	1
MED9	SCN4A	0.965	1
MED9	TRERF1	0.965	1
MED9	Xq-Del	0.965	1
MYT1	SMOC1	0.965	1
MYT1	TMEM216	0.965	1
NRAS	Del_19q13.42	0.965	1
PIK3CA	TNRC18	0.965	1
PIK3CA	ZMIZ1	0.965	1
PLXNA3	7q-Amp	0.965	1
PLXNA3	Amp_7p11.2	0.965	1
PPL	SMOC1	0.965	1
PPL	TMEM216	0.965	1
RB1	SMOC1	0.965	1
RB1	TMEM216	0.965	1
RBBP6	SMOC1	0.965	1
RBBP6	TMEM216	0.965	1
SCN4A	SMOC1	0.965	1
SCN4A	TMEM216	0.965	1
SMOC1	TRERF1	0.965	1
SMOC1	Xq-Del	0.965	1
TMEM216	TRERF1	0.965	1
TMEM216	Xq-Del	0.965	1
ZMIZ1	7q-Amp	0.965	1
Del_10q26.3	Del_11p15.5	0.965	1
AGBL1	Amp_12p13.32	0.966	1
AGBL1	Del_9p23	0.966	1
DDX5	Amp_12p13.32	0.966	1
HTRA2	Del_9p23	0.966	1
MED9	10q-Del	0.966	1
NEU2	Amp_12p13.32	0.966	1
NEU2	Del_9p23	0.966	1
SETD2	Del_18q23	0.966	1
TP53	Del_9p23	0.966	1
ZNF512B	Amp_12p13.32	0.966	1
Amp_3q26.33	Amp_12p13.32	0.966	1
Amp_3q26.33	Del_Xq21.1	0.966	1
Amp_7q31.2	Amp_13q34	0.966	1
Amp_Xp11.22	Del_9p21.3	0.966	1
Del_2q37.3	Del_9p23	0.966	1
Del_3p21.31	Del_8q24.3	0.966	1
ARID1A	Amp_17q25.1	0.967	1
ARID2	EGFR	0.967	1
ATRX	EMG1	0.967	1
ATRX	PPL	0.967	1
ATRX	Del_3p21.31	0.967	1
CREBZF	PIK3R1	0.967	1
EGFR	MYST4	0.967	1
EGFR	Del_6q22.31	0.967	1
EMG1	10p-Amp	0.967	1
IRS4	PIK3R1	0.967	1
PIK3CA	TCF12	0.967	1
PIK3R1	RET	0.967	1
PLXNA3	Amp_1q32.1	0.967	1
RB1	SMARCA4	0.967	1
RB1	18q-Del	0.967	1
RBBP6	SMARCA4	0.967	1
RET	10q-Del	0.967	1
SCN4A	SMARCA4	0.967	1
SMARCA4	TRERF1	0.967	1
TMEM216	Del_4q34.3	0.967	1
TNRC18	Amp_1q32.1	0.967	1
22q-Del	Xq-Del	0.967	1
4q-Del	Del_9p21.3	0.967	1
Xp-Del	Amp_1q32.1	0.967	1
Xp-Del	Del_2q37.3	0.967	1
Amp_3q26.33	Del_9p23	0.967	1
Del_3q13.31	Del_7p22.3	0.967	1
Del_3q13.31	Del_12q12	0.967	1
Del_8q24.3	Del_9p23	0.967	1
CREBZF	Del_4q34.3	0.968	1
CUL4B	TCF12	0.968	1
CUL4B	11p-Del	0.968	1
CUL4B	15q-Del	0.968	1
IDH1	4p-Del	0.968	1
PDGFRA	11p-Del	0.968	1
PDGFRA	9q-Del	0.968	1
PRX	15q-Del	0.968	1
SMARCA4	8q-Amp	0.968	1
SMOC1	Amp_8q24.13	0.968	1
TMEM216	Amp_8q24.13	0.968	1
ZMIZ1	Del_19q13.41	0.968	1
10p-Amp	8q-Amp	0.968	1
11p-Del	Amp_1q22	0.968	1
9q-Del	Amp_1q22	0.968	1
Xp-Del	Del_14q24.3	0.968	1
Amp_12q14.1	Del_12q12	0.968	1
Amp_17q25.1	Del_9p23	0.968	1
Del_9p21.3	Del_11p15.5	0.968	1
CIB1	CIC	0.969	1
CIB1	KRT3	0.969	1
CIB1	NAP1L2	0.969	1
CIB1	NRAS	0.969	1
CIB1	SRPX	0.969	1
CIB1	ZNF709	0.969	1
CIB1	Del_22q13.31	0.969	1
CIC	NAP1L2	0.969	1
CIC	SRPX	0.969	1
EMG1	Amp_19p13.3	0.969	1
GAGE2A	KRAS	0.969	1
KRT3	NAP1L2	0.969	1
KRT3	NRAS	0.969	1
KRT3	SRPX	0.969	1
KRT3	Del_18q23	0.969	1
MED9	10p-Del	0.969	1
MYT1	8q-Amp	0.969	1
NAP1L2	NRAS	0.969	1
NAP1L2	SRPX	0.969	1
NAP1L2	ZNF709	0.969	1
NAP1L2	Del_18q23	0.969	1
NRAS	SRPX	0.969	1
NRAS	ZNF709	0.969	1
NRAS	Del_22q13.31	0.969	1
PPL	8q-Amp	0.969	1
PTPN11	Amp_7q32.3	0.969	1
SRPX	ZNF709	0.969	1
18p-Del	Del_6p25.3	0.969	1
9q-Del	Del_13q14.2	0.969	1
Amp_11q24.1	Del_6p25.3	0.969	1
Del_3q13.31	Del_10q26.3	0.969	1
ANKRD36	Amp_8q24.13	0.97	1
CIB1	11p-Del	0.97	1
CIC	18q-Del	0.97	1
KRT3	11p-Del	0.97	1
NRAS	Del_19q13.41	0.97	1
RBBP6	Del_13q14.2	0.97	1
RBPJ	ZBTB20	0.97	1
RET	4p-Del	0.97	1
SRPX	11p-Del	0.97	1
7p-Amp	Del_8q24.3	0.97	1
11p-Del	Del_9p21.3	0.97	1
14q-Del	Del_8q24.3	0.97	1
9p-Del	Xq-Del	0.97	1
Amp_8q24.13	Del_1q43	0.97	1
AGBL1	MED9	0.971	1
AGBL1	SMOC1	0.971	1
AGBL1	TMEM216	0.971	1
ARID2	NF1	0.971	1
BRAF	MED9	0.971	1
BRAF	SMOC1	0.971	1
BRAF	TMEM216	0.971	1
DDX5	MED9	0.971	1
DDX5	SMOC1	0.971	1
DDX5	TMEM216	0.971	1
FAM47C	Del_5q34	0.971	1
HTRA2	MED9	0.971	1
HTRA2	SMOC1	0.971	1
MED9	NEU2	0.971	1
MED9	ROBO3	0.971	1
MED9	ZNF512B	0.971	1
NEU2	SMOC1	0.971	1
NEU2	TMEM216	0.971	1
PLXNA3	11q-Amp	0.971	1
PLXNA3	Del_8q24.3	0.971	1
PTEN	15q-Del	0.971	1
PTEN	Del_18q23	0.971	1
RBPJ	Del_19q13.42	0.971	1
RET	10p-Del	0.971	1
ROBO3	SMOC1	0.971	1
ROBO3	TMEM216	0.971	1
SLC6A3	Del_8q24.3	0.971	1
SMARCA4	Amp_10p15.3	0.971	1
SMOC1	ZNF512B	0.971	1
TMEM216	ZNF512B	0.971	1
ZMIZ1	1p-Del	0.971	1
ZMIZ1	Del_8q24.3	0.971	1
10p-Amp	Del_3q13.31	0.971	1
11q-Amp	1p-Del	0.971	1
7p-Amp	Del_22q13.31	0.971	1
8q-Amp	Del_13q14.2	0.971	1
10p-Del	Del_13q14.2	0.971	1
22q-Del	Amp_10p15.3	0.971	1
22q-Del	Del_3q13.31	0.971	1
6q-Del	Del_7p22.3	0.971	1
9p-Del	Del_11p15.1	0.971	1
9q-Del	Del_3p21.31	0.971	1
Amp_13q34	Del_Xq21.1	0.971	1
Del_5p15.33	Del_22q13.31	0.971	1
Del_5q34	Del_6q22.31	0.971	1
DNMT3A	Amp_10p15.3	0.972	1
EMG1	Del_3p21.31	0.972	1
MYT1	PTEN	0.972	1
MYT1	Del_3p21.31	0.972	1
MYT1	Del_5p15.33	0.972	1
PDGFRA	12q-Del	0.972	1
PDGFRA	Del_3q13.31	0.972	1
PPL	PTEN	0.972	1
PRX	Amp_10p15.3	0.972	1
PTEN	RBBP6	0.972	1
PTEN	SCN4A	0.972	1
PTEN	TRERF1	0.972	1
PTEN	Xq-Del	0.972	1
RBBP6	Amp_12q14.1	0.972	1
10p-Amp	Del_5p15.33	0.972	1
22q-Del	Del_5p15.33	0.972	1
9p-Del	Amp_1q22	0.972	1
9q-Del	Del_1p32.3	0.972	1
Xq-Del	Amp_12q14.1	0.972	1
Xq-Del	Del_3p21.31	0.972	1
Xq-Del	Del_5p15.33	0.972	1
Amp_7q32.3	Del_3q29	0.972	1
AGBL1	7q-Amp	0.973	1
AGBL1	Amp_7p11.2	0.973	1
ANKRD36	KRAS	0.973	1
ANKRD36	Amp_17q25.1	0.973	1
CREBZF	KRAS	0.973	1
DDX5	7q-Amp	0.973	1
IRS4	KRAS	0.973	1
IRS4	Amp_17q25.1	0.973	1
KRAS	PTPN11	0.973	1
KRAS	RBPJ	0.973	1
KRAS	RET	0.973	1
KRAS	Amp_2p24.3	0.973	1
KRAS	Del_1q43	0.973	1
KRT3	Amp_10p15.3	0.973	1
MED9	Del_6q24.3	0.973	1
NRAS	Amp_10p15.3	0.973	1
PIK3CA	4p-Del	0.973	1
PTPN11	Del_3q29	0.973	1
RBPJ	Del_5q34	0.973	1
ROBO3	TP53	0.973	1
TP53	ZNF512B	0.973	1
ZNF709	Amp_10p15.3	0.973	1
11q-Amp	Del_18q23	0.973	1
14q-Del	Xp-Del	0.973	1
4q-Del	Del_9p23	0.973	1
Amp_2p24.3	Amp_17q25.1	0.973	1
Amp_2p24.3	Del_3q29	0.973	1
Amp_11q24.1	Del_9p23	0.973	1
Del_12q12	Del_Xq21.1	0.973	1
CIC	PIK3R1	0.974	1
DDX5	18p-Del	0.974	1
DDX5	4q-Del	0.974	1
HTRA2	4q-Del	0.974	1
PIK3CA	4q-Del	0.974	1
PIK3R1	19q-Del	0.974	1
PPL	Del_6p25.3	0.974	1
PTPN11	Del_10q26.3	0.974	1
ROBO3	Amp_11q24.1	0.974	1
SLC6A3	TCF12	0.974	1
TCF12	TNRC18	0.974	1
TCF12	Xp-Del	0.974	1
ZMIZ1	15q-Del	0.974	1
11p-Del	Amp_12q14.1	0.974	1
15q-Del	Del_6p25.3	0.974	1
9q-Del	Del_6p25.3	0.974	1
Xq-Del	Del_6p25.3	0.974	1
Amp_1q22	Del_11p15.5	0.974	1
Amp_12p13.32	Amp_13q34	0.974	1
Del_1q43	Del_10q26.3	0.974	1
Del_4q34.3	Del_9p23	0.974	1
ARID1A	RBPJ	0.975	1
ARID1A	RET	0.975	1
CREBZF	Amp_4q12	0.975	1
EGFR	PRX	0.975	1
EGFR	STK19	0.975	1
NUDT11	Amp_Xp11.22	0.975	1
PLXNA3	Del_18q23	0.975	1
PTEN	Amp_19p13.3	0.975	1
PTPN11	Amp_4q12	0.975	1
RBPJ	Amp_4q12	0.975	1
19p-Amp	Amp_13q34	0.975	1
13q-Del	9p-Del	0.975	1
Xp-Del	Del_18q23	0.975	1
Xp-Del	Del_22q13.31	0.975	1
Amp_3q26.33	Amp_13q34	0.975	1
Amp_19p13.3	Del_3p21.31	0.975	1
ARID1A	Del_13q14.2	0.976	1
CIC	SLC6A3	0.976	1
EMG1	PIK3R1	0.976	1
FUBP1	NF1	0.976	1
HTRA2	Del_12q12	0.976	1
MED9	13q-Del	0.976	1
MED9	Del_6q22.31	0.976	1
MYT1	PIK3R1	0.976	1
MYT1	7p-Amp	0.976	1
PDGFRA	Del_Xq21.1	0.976	1
PIK3R1	PPL	0.976	1
PIK3R1	RB1	0.976	1
PIK3R1	RBBP6	0.976	1
PIK3R1	SCN4A	0.976	1
PIK3R1	TRERF1	0.976	1
RB1	7p-Amp	0.976	1
RBPJ	Del_19q13.41	0.976	1
SETD2	Del_Xq21.1	0.976	1
SMARCA4	Del_6p25.3	0.976	1
TMEM216	13q-Del	0.976	1
TMEM216	Del_6q22.31	0.976	1
10p-Amp	Del_Xq21.1	0.976	1
7p-Amp	22q-Del	0.976	1
12q-Del	Del_5p15.33	0.976	1
14q-Del	15q-Del	0.976	1
14q-Del	9q-Del	0.976	1
18q-Del	Del_6p25.3	0.976	1
9p-Del	Del_13q14.2	0.976	1
Amp_10p15.3	Del_2q37.3	0.976	1
Del_2q37.3	Del_3q13.31	0.976	1
Del_6p25.3	Del_18q23	0.976	1
AGBL1	10p-Amp	0.977	1
AGBL1	22q-Del	0.977	1
BRAF	SMARCA4	0.977	1
CIB1	MED9	0.977	1
CIB1	SMOC1	0.977	1
CIC	TCF12	0.977	1
DDX5	SMARCA4	0.977	1
DDX5	22q-Del	0.977	1
EGFR	PIK3CA	0.977	1
EMG1	KRAS	0.977	1
GAGE2A	Del_8q24.3	0.977	1
HTRA2	22q-Del	0.977	1
KRAS	MYT1	0.977	1
KRAS	PPL	0.977	1
KRAS	RB1	0.977	1
KRAS	RBBP6	0.977	1
KRAS	SCN4A	0.977	1
KRAS	TRERF1	0.977	1
KRAS	Xq-Del	0.977	1
KRT3	MED9	0.977	1
KRT3	SMOC1	0.977	1
KRT3	TMEM216	0.977	1
MED9	NAP1L2	0.977	1
MED9	NRAS	0.977	1
MED9	SRPX	0.977	1
MED9	ZNF709	0.977	1
NAP1L2	SMOC1	0.977	1
NAP1L2	TMEM216	0.977	1
NEU2	SMARCA4	0.977	1
NRAS	SMOC1	0.977	1
NRAS	TMEM216	0.977	1
PIK3R1	9q-Del	0.977	1
PTPN11	Amp_7q31.2	0.977	1
ROBO3	SMARCA4	0.977	1
ROBO3	10p-Amp	0.977	1
SLC6A3	Del_3q13.31	0.977	1
SMOC1	SRPX	0.977	1
SMOC1	ZNF709	0.977	1
SRPX	TMEM216	0.977	1
TMEM216	ZNF709	0.977	1
ZBTB20	18p-Del	0.977	1
7p-Amp	Del_9p23	0.977	1
11p-Del	Xp-Del	0.977	1
12q-Del	Del_13q14.2	0.977	1
18p-Del	4p-Del	0.977	1
Xp-Del	Del_3q13.31	0.977	1
Amp_2p24.3	Amp_7q31.2	0.977	1
Amp_3q26.33	Amp_11q24.1	0.977	1
Amp_8q24.13	Amp_13q34	0.977	1
Amp_8q24.13	Del_7p22.3	0.977	1
Amp_8q24.13	Del_11p15.1	0.977	1
Del_1q43	Del_6q24.3	0.977	1
Del_3p21.31	Del_13q14.2	0.977	1
CUL4B	NF1	0.978	1
FAM47C	IRS4	0.978	1
FAM47C	RET	0.978	1
GAGE2A	7q-Amp	0.978	1
IRS4	NIPBL	0.978	1
KRT3	NF1	0.978	1
KRT3	Del_10q26.3	0.978	1
MYT1	ZBTB20	0.978	1
NF1	PRX	0.978	1
NF1	SRPX	0.978	1
NF1	ZNF709	0.978	1
NIPBL	RET	0.978	1
NIPBL	Amp_19p13.2	0.978	1
NUDT11	Del_9p23	0.978	1
RB1	ZBTB20	0.978	1
RBBP6	ZBTB20	0.978	1
SCN4A	ZBTB20	0.978	1
SRPX	Del_10q26.3	0.978	1
STK19	6q-Del	0.978	1
TRERF1	ZBTB20	0.978	1
8q-Amp	Del_Xq21.1	0.978	1
15q-Del	Del_18q23	0.978	1
9q-Del	Del_18q23	0.978	1
Amp_3q26.33	Del_6q24.3	0.978	1
Amp_3q26.33	Del_14q24.3	0.978	1
Amp_19p13.2	Del_1q43	0.978	1
Del_3p21.31	Del_6q24.3	0.978	1
Del_3p21.31	Del_10q26.3	0.978	1
Del_3q13.31	Del_9p21.3	0.978	1
Del_5p15.33	Del_10q26.3	0.978	1
AGBL1	Amp_19p13.3	0.979	1
ANKRD36	Del_11p15.1	0.979	1
ARID2	ATRX	0.979	1
ARID2	MYST4	0.979	1
ARID2	NUDT11	0.979	1
ARID2	Amp_13q34	0.979	1
ATRX	Amp_13q34	0.979	1
CIC	FAM47C	0.979	1
CUL4B	19p-Amp	0.979	1
CUL4B	7p-Amp	0.979	1
CUL4B	Amp_Xp11.22	0.979	1
HTRA2	8q-Amp	0.979	1
IDH1	TCF12	0.979	1
IDH2	11q-Amp	0.979	1
NEU2	Amp_19p13.3	0.979	1
NRAS	Amp_12p13.32	0.979	1
NUDT11	Del_9p21.3	0.979	1
PIK3R1	18q-Del	0.979	1
PRX	19p-Amp	0.979	1
SETD2	Amp_3q26.33	0.979	1
SETD2	Amp_Xp11.22	0.979	1
STK19	Amp_3q26.33	0.979	1
11q-Amp	Del_3q29	0.979	1
19p-Amp	Amp_1q22	0.979	1
12q-Del	Del_6p25.3	0.979	1
Amp_1q22	Amp_3q26.33	0.979	1
Amp_3q26.33	Del_12q12	0.979	1
Amp_12p13.32	Del_12q12	0.979	1
Amp_17q25.1	Del_9p21.3	0.979	1
Del_3q29	Del_9p21.3	0.979	1
Del_3q29	Del_10q26.3	0.979	1
Del_5q34	Del_8q24.3	0.979	1
Del_5q34	Del_10q26.3	0.979	1
Del_10q26.3	Del_11p15.1	0.979	1
Del_10q26.3	Del_Xq21.1	0.979	1
AGBL1	KRAS	0.98	1
BRAF	KRAS	0.98	1
CIB1	Amp_7q31.2	0.98	1
CIC	EMG1	0.98	1
DDX5	KRAS	0.98	1
EMG1	Amp_17q25.1	0.98	1
EMG1	Del_3q29	0.98	1
FUBP1	IRS4	0.98	1
FUBP1	RET	0.98	1
GAGE2A	9q-Del	0.98	1
HTRA2	KRAS	0.98	1
IRS4	Del_6q22.31	0.98	1
KRAS	NEU2	0.98	1
KRAS	ROBO3	0.98	1
KRAS	ZNF512B	0.98	1
MYT1	Amp_17q25.1	0.98	1
MYT1	Del_5q34	0.98	1
NOTCH1	PIK3CA	0.98	1
PTPN11	Amp_1q32.1	0.98	1
RBBP6	Del_3q29	0.98	1
RBBP6	Del_4q34.3	0.98	1
8q-Amp	13q-Del	0.98	1
15q-Del	4p-Del	0.98	1
Xp-Del	Amp_10p15.3	0.98	1
Xq-Del	Del_3q29	0.98	1
Amp_1q22	Amp_12p13.32	0.98	1
Amp_1q32.1	Del_1q43	0.98	1
Del_1q43	Del_6q22.31	0.98	1
Del_2q37.3	Del_3q29	0.98	1
Del_2q37.3	Del_5q34	0.98	1
AGBL1	Del_3p21.31	0.981	1
AGBL1	Del_5p15.33	0.981	1
ARID1A	19q-Del	0.981	1
ATRX	Del_12q12	0.981	1
DDX5	PTEN	0.981	1
DDX5	Del_5p15.33	0.981	1
EGFR	PLXNA3	0.981	1
HTRA2	Del_3p21.31	0.981	1
NF1	Amp_1q32.1	0.981	1
PTEN	ZNF512B	0.981	1
19p-Amp	22q-Del	0.981	1
9p-Del	Xp-Del	0.981	1
Amp_7q31.2	Amp_11q24.1	0.981	1
Amp_11q24.1	Amp_17q25.1	0.981	1
Amp_12q14.1	Del_Xq21.1	0.981	1
Del_3p21.31	Del_Xq21.1	0.981	1
ARID1A	EMG1	0.982	1
ARID1A	MYT1	0.982	1
ARID1A	PPL	0.982	1
ARID1A	RB1	0.982	1
ARID1A	RBBP6	0.982	1
ARID1A	SCN4A	0.982	1
ARID1A	TRERF1	0.982	1
ATRX	TNRC18	0.982	1
BRAF	Del_6p25.3	0.982	1
GAGE2A	12q-Del	0.982	1
GAGE2A	Del_3q13.31	0.982	1
HTRA2	Del_6p25.3	0.982	1
IRS4	Del_8q24.3	0.982	1
MED9	SMOC1	0.982	1
MED9	TMEM216	0.982	1
NEU2	Del_6p25.3	0.982	1
NF1	Amp_7p11.2	0.982	1
PLXNA3	Amp_7q32.3	0.982	1
PTEN	Del_6p25.3	0.982	1
PTPN11	Del_8q24.3	0.982	1
SMARCA4	ZBTB20	0.982	1
SMARCA4	4p-Del	0.982	1
SMOC1	TMEM216	0.982	1
TP53	Del_13q14.2	0.982	1
ZBTB20	18q-Del	0.982	1
ZMIZ1	Amp_7q32.3	0.982	1
10p-Amp	Amp_12p13.32	0.982	1
10p-Del	13q-Del	0.982	1
10q-Del	9q-Del	0.982	1
13q-Del	Amp_3q26.33	0.982	1
18q-Del	4p-Del	0.982	1
22q-Del	Amp_12p13.32	0.982	1
9p-Del	Amp_19p13.2	0.982	1
Amp_3q26.33	Del_6q22.31	0.982	1
Amp_10p15.3	Del_9p21.3	0.982	1
Del_4q34.3	Del_18q23	0.982	1
Del_6p25.3	Del_13q14.2	0.982	1
Del_8q24.3	Del_10q26.3	0.982	1
ARID2	CUL4B	0.983	1
ARID2	PRX	0.983	1
ARID2	SETD2	0.983	1
ARID2	STK19	0.983	1
CUL4B	MYST4	0.983	1
CUL4B	NUDT11	0.983	1
DNMT3A	MYST4	0.983	1
DNMT3A	NUDT11	0.983	1
DNMT3A	Del_4q34.3	0.983	1
MED9	14q-Del	0.983	1
MYST4	PDGFRA	0.983	1
MYST4	PRX	0.983	1
MYST4	SETD2	0.983	1
MYST4	STK19	0.983	1
NUDT11	PDGFRA	0.983	1
NUDT11	STK19	0.983	1
PLXNA3	19p-Amp	0.983	1
PTEN	13q-Del	0.983	1
RBBP6	Del_1p36.32	0.983	1
RBBP6	Del_1p32.3	0.983	1
SMOC1	14q-Del	0.983	1
STK19	Del_7p22.3	0.983	1
ZBTB20	Del_18q23	0.983	1
8q-Amp	Amp_Xp11.22	0.983	1
12q-Del	Del_22q13.31	0.983	1
13q-Del	Amp_12q14.1	0.983	1
4q-Del	9p-Del	0.983	1
9q-Del	Del_3q29	0.983	1
9q-Del	Del_5q34	0.983	1
Amp_3q26.33	Amp_19p13.3	0.983	1
Amp_19p13.2	Del_9p23	0.983	1
Del_3p21.31	Del_14q24.3	0.983	1
Del_3q13.31	Del_9p23	0.983	1
Del_3q13.31	Del_22q13.31	0.983	1
Del_6p25.3	Del_11p15.5	0.983	1
AGBL1	9p-Del	0.984	1
ANKRD36	Del_9p23	0.984	1
ARID1A	Amp_11q24.1	0.984	1
BRAF	PIK3R1	0.984	1
CIB1	KRAS	0.984	1
CREBZF	9q-Del	0.984	1
DDX5	PIK3R1	0.984	1
DDX5	Del_11p15.5	0.984	1
FAM47C	MYT1	0.984	1
FAM47C	PPL	0.984	1
FAM47C	RB1	0.984	1
FAM47C	RBBP6	0.984	1
FAM47C	SCN4A	0.984	1
FAM47C	TRERF1	0.984	1
FAM47C	Del_8q24.3	0.984	1
GAGE2A	11p-Del	0.984	1
HTRA2	9p-Del	0.984	1
IDH1	Del_5p15.33	0.984	1
KRAS	KRT3	0.984	1
KRAS	NAP1L2	0.984	1
KRAS	NRAS	0.984	1
KRAS	SRPX	0.984	1
KRAS	ZNF709	0.984	1
MED9	Del_22q13.31	0.984	1
MYST4	Amp_7p11.2	0.984	1
MYT1	NIPBL	0.984	1
NEU2	9p-Del	0.984	1
NF1	PLXNA3	0.984	1
NF1	TNRC18	0.984	1
NF1	ZMIZ1	0.984	1
NIPBL	PPL	0.984	1
NIPBL	RB1	0.984	1
NIPBL	RBBP6	0.984	1
NIPBL	SCN4A	0.984	1
NIPBL	TRERF1	0.984	1
NRAS	4q-Del	0.984	1
PIK3R1	ZNF512B	0.984	1
RBBP6	19q-Del	0.984	1
RBPJ	9q-Del	0.984	1
RBPJ	Del_9p23	0.984	1
TRERF1	Amp_19p13.2	0.984	1
ZNF512B	Del_13q14.2	0.984	1
11p-Del	13q-Del	0.984	1
4q-Del	Del_11p15.5	0.984	1
9q-Del	Del_1q43	0.984	1
Amp_7p11.2	Amp_13q34	0.984	1
Amp_7q31.2	Del_9p23	0.984	1
Amp_13q34	Del_12q12	0.984	1
Del_7p22.3	Del_12q12	0.984	1
ANKRD36	Del_2q37.3	0.985	1
ARID1A	15q-Del	0.985	1
BRAF	ZBTB20	0.985	1
DDX5	ZBTB20	0.985	1
HTRA2	4p-Del	0.985	1
NUDT11	22q-Del	0.985	1
PTEN	6q-Del	0.985	1
RB1	Amp_1q32.1	0.985	1
RET	Del_2q37.3	0.985	1
SMARCA4	Amp_8q24.13	0.985	1
SMARCA4	Del_7p22.3	0.985	1
TP53	Xp-Del	0.985	1
ZBTB20	ZNF512B	0.985	1
10p-Amp	Amp_17q25.1	0.985	1
10p-Amp	Del_3q29	0.985	1
19p-Amp	Del_3p21.31	0.985	1
10p-Del	9q-Del	0.985	1
10q-Del	Del_6q24.3	0.985	1
11p-Del	Del_3q13.31	0.985	1
22q-Del	Amp_13q34	0.985	1
22q-Del	Del_5q34	0.985	1
6q-Del	Del_8q24.3	0.985	1
Xq-Del	Amp_1q32.1	0.985	1
Amp_2p24.3	Del_2q37.3	0.985	1
Del_6p25.3	Del_11p15.1	0.985	1
Del_9p23	Del_11p15.1	0.985	1
AGBL1	Del_5q34	0.986	1
ANKRD36	ATRX	0.986	1
ANKRD36	Del_3q13.31	0.986	1
ARID2	PLXNA3	0.986	1
ARID2	SLC6A3	0.986	1
ARID2	ZMIZ1	0.986	1
ATRX	IRS4	0.986	1
CIB1	22q-Del	0.986	1
CUL4B	DNMT3A	0.986	1
CUL4B	PDGFRA	0.986	1
CUL4B	SETD2	0.986	1
CUL4B	STK19	0.986	1
DNMT3A	PDGFRA	0.986	1
DNMT3A	SETD2	0.986	1
DNMT3A	STK19	0.986	1
DNMT3A	Amp_1q22	0.986	1
DNMT3A	Amp_11q24.1	0.986	1
HTRA2	IDH2	0.986	1
HTRA2	Del_3q29	0.986	1
IRS4	NOTCH1	0.986	1
KRT3	10p-Amp	0.986	1
MYST4	TNRC18	0.986	1
NEU2	Del_3q29	0.986	1
NRAS	10p-Amp	0.986	1
NRAS	22q-Del	0.986	1
NUDT11	PLXNA3	0.986	1
NUDT11	TNRC18	0.986	1
NUDT11	ZMIZ1	0.986	1
NUDT11	Del_11p15.1	0.986	1
PDGFRA	PRX	0.986	1
PDGFRA	SETD2	0.986	1
PDGFRA	STK19	0.986	1
PRX	STK19	0.986	1
RB1	Del_6q24.3	0.986	1
SETD2	STK19	0.986	1
SETD2	18p-Del	0.986	1
TP53	Amp_3q26.33	0.986	1
ZNF512B	Amp_17q25.1	0.986	1
ZNF512B	Del_3q29	0.986	1
ZNF709	10p-Amp	0.986	1
11p-Del	Amp_8q24.13	0.986	1
11p-Del	Del_10q26.3	0.986	1
11p-Del	Del_13q14.2	0.986	1
18p-Del	4q-Del	0.986	1
9p-Del	Amp_7q31.2	0.986	1
Xp-Del	Del_7p22.3	0.986	1
Amp_3q26.33	Del_6p25.3	0.986	1
Amp_4q12	Del_12q12	0.986	1
Amp_8q24.13	Amp_17q25.1	0.986	1
Amp_8q24.13	Del_5q34	0.986	1
Amp_12p13.32	Del_8q24.3	0.986	1
Del_3q13.31	Del_5q34	0.986	1
Del_6q24.3	Del_8q24.3	0.986	1
Del_7p22.3	Del_14q24.3	0.986	1
Del_8q24.3	Del_9p21.3	0.986	1
Del_12q12	Del_13q14.2	0.986	1
AGBL1	7p-Amp	0.987	1
CIB1	8q-Amp	0.987	1
CIC	IDH2	0.987	1
CREBZF	14q-Del	0.987	1
EMG1	11q-Amp	0.987	1
GAGE2A	Amp_Xp11.22	0.987	1
KRT3	8q-Amp	0.987	1
MYST4	8q-Amp	0.987	1
NAP1L2	Amp_19p13.3	0.987	1
NIPBL	15q-Del	0.987	1
NUDT11	13q-Del	0.987	1
PIK3CA	Del_19q13.41	0.987	1
PPL	Del_8q24.3	0.987	1
RB1	Del_10q26.3	0.987	1
TP53	TRERF1	0.987	1
8q-Amp	Amp_17q25.1	0.987	1
8q-Amp	Del_4q34.3	0.987	1
8q-Amp	Del_7p22.3	0.987	1
9p-Del	Del_2q37.3	0.987	1
9q-Del	Amp_19p13.2	0.987	1
Xq-Del	Del_8q24.3	0.987	1
Amp_1q32.1	Del_8q24.3	0.987	1
Amp_7q31.2	Del_2q37.3	0.987	1
Amp_13q34	Amp_19p13.3	0.987	1
Del_5q34	Del_22q13.31	0.987	1
Del_6p25.3	Del_14q24.3	0.987	1
AGBL1	ARID1A	0.988	1
ARID1A	BRAF	0.988	1
ARID1A	DDX5	0.988	1
CIB1	Del_1p36.32	0.988	1
CUL4B	SLC6A3	0.988	1
CUL4B	TNRC18	0.988	1
CUL4B	ZMIZ1	0.988	1
DDX5	Amp_4q12	0.988	1
DNMT3A	PLXNA3	0.988	1
DNMT3A	SLC6A3	0.988	1
FUBP1	PPL	0.988	1
FUBP1	RBBP6	0.988	1
KRAS	MED9	0.988	1
KRAS	SMOC1	0.988	1
KRAS	TMEM216	0.988	1
KRT3	Amp_12q14.1	0.988	1
MED9	NF1	0.988	1
MED9	6q-Del	0.988	1
MYST4	PTEN	0.988	1
NRAS	Del_1p36.32	0.988	1
NRAS	Del_1p32.3	0.988	1
NRAS	Del_3p21.31	0.988	1
PDGFRA	PLXNA3	0.988	1
PDGFRA	TNRC18	0.988	1
PDGFRA	ZMIZ1	0.988	1
PDGFRA	Del_12q12	0.988	1
PIK3R1	Amp_3q26.33	0.988	1
PLXNA3	PRX	0.988	1
PLXNA3	STK19	0.988	1
PLXNA3	Amp_7q31.2	0.988	1
PRX	SLC6A3	0.988	1
PRX	TNRC18	0.988	1
PRX	Xp-Del	0.988	1
PTPN11	7q-Amp	0.988	1
PTPN11	Amp_7p11.2	0.988	1
RBBP6	13q-Del	0.988	1
RBBP6	1p-Del	0.988	1
RET	Del_22q13.31	0.988	1
SETD2	SLC6A3	0.988	1
SETD2	TNRC18	0.988	1
SETD2	ZMIZ1	0.988	1
SLC6A3	STK19	0.988	1
SRPX	Amp_7p11.2	0.988	1
STK19	TNRC18	0.988	1
STK19	ZMIZ1	0.988	1
ZMIZ1	Amp_7q31.2	0.988	1
ZNF709	Amp_12q14.1	0.988	1
12q-Del	Amp_4q12	0.988	1
13q-Del	Amp_10p15.3	0.988	1
13q-Del	Del_9p23	0.988	1
22q-Del	Amp_4q12	0.988	1
Amp_7q32.3	Amp_11q24.1	0.988	1
Amp_17q25.1	Del_Xq21.1	0.988	1
Amp_19p13.3	Del_9p23	0.988	1
Del_1q43	Del_Xq21.1	0.988	1
Del_2q37.3	Del_4q34.3	0.988	1
Del_3p21.31	Del_7p22.3	0.988	1
Del_3q29	Del_Xq21.1	0.988	1
Del_5q34	Del_Xq21.1	0.988	1
Del_8q24.3	Del_11p15.1	0.988	1
AGBL1	10q-Del	0.989	1
AGBL1	Del_9p21.3	0.989	1
ANKRD36	11p-Del	0.989	1
ARID2	GAGE2A	0.989	1
BRAF	FAM47C	0.989	1
BRAF	NIPBL	0.989	1
CREBZF	Del_14q24.3	0.989	1
DDX5	NIPBL	0.989	1
DDX5	Amp_19p13.2	0.989	1
EMG1	15q-Del	0.989	1
FAM47C	NOTCH1	0.989	1
GAGE2A	Del_7p22.3	0.989	1
GAGE2A	Del_11p15.5	0.989	1
KRT3	Del_6p25.3	0.989	1
MYST4	Del_19q13.42	0.989	1
MYT1	TCF12	0.989	1
NF1	Del_10q26.3	0.989	1
NIPBL	ZNF512B	0.989	1
RET	Del_14q24.3	0.989	1
SETD2	18q-Del	0.989	1
SRPX	Del_14q24.3	0.989	1
TCF12	TRERF1	0.989	1
TRERF1	9q-Del	0.989	1
ZNF709	Del_6p25.3	0.989	1
19p-Amp	9p-Del	0.989	1
7p-Amp	9p-Del	0.989	1
8q-Amp	Amp_4q12	0.989	1
9q-Del	Xq-Del	0.989	1
Amp_4q12	Del_22q13.31	0.989	1
Amp_8q24.13	Del_2q37.3	0.989	1
Amp_12q14.1	Del_3q29	0.989	1
Amp_12q14.1	Del_5q34	0.989	1
Del_1q43	Del_14q24.3	0.989	1
Del_2q37.3	Del_6q22.31	0.989	1
AGBL1	10p-Del	0.99	1
ANKRD36	Amp_3q26.33	0.99	1
DNMT3A	8q-Amp	0.99	1
IDH1	SMARCA4	0.99	1
IRS4	Amp_3q26.33	0.99	1
MYST4	Amp_7q32.3	0.99	1
MYT1	12q-Del	0.99	1
NF1	Del_6q24.3	0.99	1
PIK3CA	RBBP6	0.99	1
PIK3CA	TRERF1	0.99	1
PIK3CA	Del_19q13.42	0.99	1
PIK3R1	Del_1p36.32	0.99	1
PIK3R1	Del_1p32.3	0.99	1
PRX	Amp_19p13.3	0.99	1
TP53	6q-Del	0.99	1
ZMIZ1	18p-Del	0.99	1
10p-Amp	4q-Del	0.99	1
19p-Amp	Del_1q43	0.99	1
10p-Del	Amp_4q12	0.99	1
10p-Del	Del_6q24.3	0.99	1
14q-Del	Amp_3q26.33	0.99	1
18p-Del	Xp-Del	0.99	1
4q-Del	Amp_10p15.3	0.99	1
9p-Del	Del_8q24.3	0.99	1
Xq-Del	Del_3q13.31	0.99	1
Amp_1q22	Del_11p15.1	0.99	1
Amp_4q12	Del_Xq21.1	0.99	1
Amp_7q32.3	Amp_13q34	0.99	1
Amp_10p15.3	Del_13q14.2	0.99	1
Amp_13q34	Del_6p25.3	0.99	1
ANKRD36	Amp_10p15.3	0.991	1
ARID2	PIK3R1	0.991	1
CUL4B	PTEN	0.991	1
CUL4B	Del_5p15.33	0.991	1
DNMT3A	FUBP1	0.991	1
DNMT3A	GAGE2A	0.991	1
EGFR	RET	0.991	1
GAGE2A	Amp_7q32.3	0.991	1
HTRA2	Del_8q24.3	0.991	1
NOTCH1	PPL	0.991	1
NOTCH1	SCN4A	0.991	1
NOTCH1	Del_7p22.3	0.991	1
NRAS	1p-Del	0.991	1
NUDT11	PIK3R1	0.991	1
PDGFRA	Amp_12q14.1	0.991	1
PDGFRA	Del_3p21.31	0.991	1
PLXNA3	SLC6A3	0.991	1
PLXNA3	TNRC18	0.991	1
PPL	Del_Xq21.1	0.991	1
PRX	Del_14q24.3	0.991	1
PTEN	STK19	0.991	1
PTEN	Amp_4q12	0.991	1
SLC6A3	TNRC18	0.991	1
SLC6A3	ZMIZ1	0.991	1
SMARCA4	TP53	0.991	1
TNRC18	ZMIZ1	0.991	1
ZBTB20	ZNF709	0.991	1
ZMIZ1	Xp-Del	0.991	1
19p-Amp	Del_22q13.31	0.991	1
10q-Del	Del_6p25.3	0.991	1
10q-Del	Del_6q22.31	0.991	1
Amp_3q26.33	Del_3q29	0.991	1
Amp_4q12	Del_5p15.33	0.991	1
Amp_10p15.3	Del_5q34	0.991	1
Amp_10p15.3	Del_Xq21.1	0.991	1
Amp_13q34	Del_2q37.3	0.991	1
Amp_Xp11.22	Del_5q34	0.991	1
Del_2q37.3	Del_6p25.3	0.991	1
Del_2q37.3	Del_7p22.3	0.991	1
Del_3q29	Del_9p23	0.991	1
Del_5q34	Del_6p25.3	0.991	1
Del_5q34	Del_9p23	0.991	1
Del_8q24.3	Del_11p15.5	0.991	1
Del_14q24.3	Del_19q13.42	0.991	1
ANKRD36	Del_7p22.3	0.992	1
ANKRD36	Del_9p21.3	0.992	1
ARID1A	NAP1L2	0.992	1
ARID2	IRS4	0.992	1
ATRX	ZNF512B	0.992	1
CIB1	IDH2	0.992	1
CIB1	Del_3q29	0.992	1
CREBZF	MYST4	0.992	1
EGFR	Del_14q24.3	0.992	1
HTRA2	9q-Del	0.992	1
IDH2	NAP1L2	0.992	1
IRS4	MYST4	0.992	1
IRS4	NUDT11	0.992	1
KRT3	Amp_17q25.1	0.992	1
KRT3	Del_5q34	0.992	1
MYST4	RET	0.992	1
MYST4	ZBTB20	0.992	1
MYST4	Del_1p32.3	0.992	1
MYST4	Del_19q13.41	0.992	1
NAP1L2	Del_5q34	0.992	1
NEU2	9q-Del	0.992	1
NRAS	Del_3q29	0.992	1
NUDT11	RET	0.992	1
NUDT11	Del_1q43	0.992	1
PDGFRA	Del_6p25.3	0.992	1
SLC6A3	SMARCA4	0.992	1
TMEM216	4q-Del	0.992	1
TMEM216	Del_12q12	0.992	1
ZMIZ1	18q-Del	0.992	1
ZNF709	Amp_17q25.1	0.992	1
ZNF709	Del_5q34	0.992	1
8q-Amp	Del_11p15.5	0.992	1
12q-Del	Amp_12p13.32	0.992	1
13q-Del	4p-Del	0.992	1
9p-Del	Amp_19p13.3	0.992	1
9p-Del	Del_3q29	0.992	1
Amp_2p24.3	Del_7p22.3	0.992	1
Amp_3q26.33	Amp_4q12	0.992	1
Amp_3q26.33	Del_9p21.3	0.992	1
Amp_13q34	Del_1q43	0.992	1
ANKRD36	DNMT3A	0.993	1
ANKRD36	Amp_1q22	0.993	1
ANKRD36	Amp_12p13.32	0.993	1
BRAF	Del_3q13.31	0.993	1
CREBZF	PRX	0.993	1
CREBZF	Del_1p36.32	0.993	1
CUL4B	IRS4	0.993	1
CUL4B	RET	0.993	1
CUL4B	Amp_2p24.3	0.993	1
DNMT3A	PIK3R1	0.993	1
DNMT3A	RET	0.993	1
FAM47C	ZNF709	0.993	1
HTRA2	Del_3q13.31	0.993	1
IRS4	NF1	0.993	1
IRS4	PDGFRA	0.993	1
IRS4	SETD2	0.993	1
IRS4	STK19	0.993	1
IRS4	Amp_1q22	0.993	1
MED9	22q-Del	0.993	1
MYST4	Amp_7q31.2	0.993	1
MYST4	Del_18q23	0.993	1
NEU2	Del_3q13.31	0.993	1
NF1	PTPN11	0.993	1
NF1	Del_6q22.31	0.993	1
NIPBL	NRAS	0.993	1
NUDT11	Del_3q29	0.993	1
NUDT11	Del_13q14.2	0.993	1
PDGFRA	PIK3CA	0.993	1
PDGFRA	RBPJ	0.993	1
PDGFRA	RET	0.993	1
PIK3R1	PRX	0.993	1
PPL	Amp_Xp11.22	0.993	1
PRX	RET	0.993	1
PTEN	14q-Del	0.993	1
RB1	Del_22q13.31	0.993	1
RBPJ	Del_1p36.32	0.993	1
RET	SETD2	0.993	1
RET	STK19	0.993	1
RET	Amp_1q22	0.993	1
SMARCA4	SMOC1	0.993	1
SMARCA4	10p-Amp	0.993	1
ZMIZ1	19q-Del	0.993	1
ZNF709	Del_11p15.5	0.993	1
19p-Amp	Del_9p23	0.993	1
8q-Amp	11p-Del	0.993	1
8q-Amp	Amp_7p11.2	0.993	1
10q-Del	Del_13q14.2	0.993	1
14q-Del	9p-Del	0.993	1
14q-Del	Del_9p23	0.993	1
15q-Del	18p-Del	0.993	1
18p-Del	Del_4q34.3	0.993	1
22q-Del	Del_11p15.1	0.993	1
4q-Del	Del_3p21.31	0.993	1
4q-Del	Del_19q13.42	0.993	1
6q-Del	Del_1q43	0.993	1
Amp_1q22	Amp_2p24.3	0.993	1
Amp_1q22	Del_1q43	0.993	1
Amp_1q32.1	Amp_19p13.3	0.993	1
Amp_2p24.3	Amp_12p13.32	0.993	1
Amp_3q26.33	Amp_19p13.2	0.993	1
Amp_13q34	Del_3q29	0.993	1
Del_3q13.31	Del_8q24.3	0.993	1
ARID1A	Del_1p32.3	0.994	1
ARID2	MYT1	0.994	1
ARID2	PPL	0.994	1
ARID2	RB1	0.994	1
ARID2	RBBP6	0.994	1
ARID2	SCN4A	0.994	1
ARID2	TRERF1	0.994	1
CREBZF	Del_1p32.3	0.994	1
CUL4B	ZBTB20	0.994	1
DNMT3A	NOTCH1	0.994	1
DNMT3A	ZBTB20	0.994	1
EMG1	MYST4	0.994	1
EMG1	Del_7p22.3	0.994	1
FUBP1	SLC6A3	0.994	1
FUBP1	ZNF512B	0.994	1
GAGE2A	Amp_7q31.2	0.994	1
GAGE2A	Amp_8q24.13	0.994	1
HTRA2	Del_Xq21.1	0.994	1
IDH1	4q-Del	0.994	1
IDH1	Del_5q34	0.994	1
IRS4	PLXNA3	0.994	1
IRS4	TNRC18	0.994	1
IRS4	TP53	0.994	1
IRS4	Xp-Del	0.994	1
KRAS	Del_18q23	0.994	1
MED9	Del_6p25.3	0.994	1
MYST4	MYT1	0.994	1
MYST4	PPL	0.994	1
MYST4	RB1	0.994	1
MYST4	SCN4A	0.994	1
MYST4	TRERF1	0.994	1
MYT1	NUDT11	0.994	1
MYT1	Amp_10p15.3	0.994	1
MYT1	Del_7p22.3	0.994	1
NOTCH1	PIK3R1	0.994	1
NUDT11	PPL	0.994	1
NUDT11	RB1	0.994	1
NUDT11	SCN4A	0.994	1
NUDT11	TRERF1	0.994	1
PDGFRA	ZBTB20	0.994	1
PIK3CA	ZBTB20	0.994	1
PLXNA3	RET	0.994	1
PRX	ZBTB20	0.994	1
PTEN	TNRC18	0.994	1
RB1	Amp_7p11.2	0.994	1
RBPJ	19q-Del	0.994	1
RBPJ	Del_1p32.3	0.994	1
RET	SLC6A3	0.994	1
RET	TNRC18	0.994	1
RET	ZMIZ1	0.994	1
SCN4A	Del_7p22.3	0.994	1
SMOC1	Del_5p15.33	0.994	1
SRPX	Amp_1q32.1	0.994	1
ZNF512B	13q-Del	0.994	1
10p-Amp	13q-Del	0.994	1
10p-Amp	Del_9p21.3	0.994	1
11q-Amp	18q-Del	0.994	1
10p-Del	Del_6p25.3	0.994	1
10p-Del	Del_6q22.31	0.994	1
11p-Del	Del_3p21.31	0.994	1
13q-Del	Del_3q29	0.994	1
13q-Del	Del_5q34	0.994	1
9p-Del	Del_5p15.33	0.994	1
9q-Del	Del_3q13.31	0.994	1
Xp-Del	Del_1q43	0.994	1
Xp-Del	Del_6p25.3	0.994	1
Xq-Del	Amp_10p15.3	0.994	1
Xq-Del	Del_7p22.3	0.994	1
Amp_1q22	Amp_7q32.3	0.994	1
Amp_1q32.1	Amp_3q26.33	0.994	1
Amp_4q12	Del_9p23	0.994	1
Amp_11q24.1	Del_2q37.3	0.994	1
Del_3p21.31	Del_12q12	0.994	1
Del_4q34.3	Del_9p21.3	0.994	1
Del_5p15.33	Del_12q12	0.994	1
Del_5p15.33	Del_13q14.2	0.994	1
Del_5q34	Del_9p21.3	0.994	1
Del_18q23	Del_19q13.42	0.994	1
AGBL1	Amp_Xp11.22	0.995	1
AGBL1	Del_10q26.3	0.995	1
ARID1A	13q-Del	0.995	1
CIB1	15q-Del	0.995	1
CUL4B	MYT1	0.995	1
CUL4B	RB1	0.995	1
CUL4B	RBBP6	0.995	1
CUL4B	SCN4A	0.995	1
DDX5	NOTCH1	0.995	1
DNMT3A	MYT1	0.995	1
DNMT3A	PPL	0.995	1
DNMT3A	RB1	0.995	1
DNMT3A	RBBP6	0.995	1
DNMT3A	SCN4A	0.995	1
DNMT3A	TRERF1	0.995	1
DNMT3A	Xq-Del	0.995	1
EGFR	NF1	0.995	1
EGFR	RB1	0.995	1
EGFR	TRERF1	0.995	1
EGFR	Amp_19p13.3	0.995	1
FAM47C	MYST4	0.995	1
FAM47C	NUDT11	0.995	1
MYST4	7p-Amp	0.995	1
MYST4	1p-Del	0.995	1
MYT1	PDGFRA	0.995	1
MYT1	SETD2	0.995	1
MYT1	STK19	0.995	1
NAP1L2	15q-Del	0.995	1
NF1	Del_14q24.3	0.995	1
NIPBL	NUDT11	0.995	1
NOTCH1	ROBO3	0.995	1
NOTCH1	TCF12	0.995	1
PDGFRA	PPL	0.995	1
PDGFRA	RB1	0.995	1
PDGFRA	RBBP6	0.995	1
PDGFRA	SCN4A	0.995	1
PDGFRA	TRERF1	0.995	1
PIK3R1	SMOC1	0.995	1
PIK3R1	ZMIZ1	0.995	1
PIK3R1	1p-Del	0.995	1
PPL	PRX	0.995	1
PPL	SETD2	0.995	1
PPL	STK19	0.995	1
PRX	RB1	0.995	1
PRX	RBBP6	0.995	1
PRX	SCN4A	0.995	1
PRX	TRERF1	0.995	1
PTPN11	7p-Amp	0.995	1
RB1	STK19	0.995	1
RB1	Del_14q24.3	0.995	1
RBBP6	SETD2	0.995	1
RBBP6	STK19	0.995	1
RBBP6	Amp_1q22	0.995	1
ROBO3	Amp_3q26.33	0.995	1
SCN4A	SETD2	0.995	1
SETD2	TRERF1	0.995	1
SMOC1	4p-Del	0.995	1
SRPX	10q-Del	0.995	1
STK19	TRERF1	0.995	1
TMEM216	4p-Del	0.995	1
ZNF512B	Del_2q37.3	0.995	1
7p-Amp	Amp_13q34	0.995	1
8q-Amp	Amp_10p15.3	0.995	1
8q-Amp	Del_11p15.1	0.995	1
11p-Del	Del_4q34.3	0.995	1
11p-Del	Del_6p25.3	0.995	1
11p-Del	Del_22q13.31	0.995	1
12q-Del	Del_3q13.31	0.995	1
15q-Del	18q-Del	0.995	1
4q-Del	Amp_12p13.32	0.995	1
4q-Del	Del_13q14.2	0.995	1
Amp_7q32.3	Del_9p23	0.995	1
Amp_10p15.3	Del_7p22.3	0.995	1
Amp_12p13.32	Del_9p21.3	0.995	1
Del_5p15.33	Del_8q24.3	0.995	1
Del_6q24.3	Del_Xq21.1	0.995	1
ARID1A	PRX	0.996	1
ARID2	BRAF	0.996	1
ARID2	DDX5	0.996	1
ARID2	ZNF512B	0.996	1
BRAF	MYST4	0.996	1
BRAF	NUDT11	0.996	1
CREBZF	1p-Del	0.996	1
CREBZF	4q-Del	0.996	1
CUL4B	Amp_19p13.2	0.996	1
DDX5	MYST4	0.996	1
DDX5	NUDT11	0.996	1
EGFR	Amp_13q34	0.996	1
EMG1	ZMIZ1	0.996	1
FUBP1	PIK3CA	0.996	1
IDH1	11p-Del	0.996	1
IDH2	NIPBL	0.996	1
IDH2	TMEM216	0.996	1
IDH2	Del_19q13.42	0.996	1
MYST4	ZNF512B	0.996	1
MYT1	NF1	0.996	1
MYT1	PLXNA3	0.996	1
MYT1	SLC6A3	0.996	1
MYT1	TNRC18	0.996	1
MYT1	ZMIZ1	0.996	1
NEU2	NUDT11	0.996	1
NEU2	Del_7p22.3	0.996	1
NF1	RBBP6	0.996	1
NOTCH1	SLC6A3	0.996	1
NUDT11	ZNF512B	0.996	1
PDGFRA	Del_10q26.3	0.996	1
PIK3CA	SLC6A3	0.996	1
PLXNA3	RBBP6	0.996	1
PLXNA3	SCN4A	0.996	1
PLXNA3	TRERF1	0.996	1
PPL	SLC6A3	0.996	1
PPL	TNRC18	0.996	1
PPL	ZMIZ1	0.996	1
PRX	Del_18q23	0.996	1
PTPN11	10q-Del	0.996	1
RB1	SLC6A3	0.996	1
RB1	TNRC18	0.996	1
RB1	ZMIZ1	0.996	1
RBBP6	SLC6A3	0.996	1
RBBP6	TNRC18	0.996	1
RBPJ	1p-Del	0.996	1
RET	22q-Del	0.996	1
ROBO3	Del_7p22.3	0.996	1
SCN4A	SLC6A3	0.996	1
SCN4A	TNRC18	0.996	1
SCN4A	ZMIZ1	0.996	1
SLC6A3	TRERF1	0.996	1
SMARCA4	Del_1q43	0.996	1
SRPX	10p-Del	0.996	1
STK19	Amp_19p13.2	0.996	1
TMEM216	Amp_17q25.1	0.996	1
TNRC18	TRERF1	0.996	1
TNRC18	ZBTB20	0.996	1
TP53	Amp_13q34	0.996	1
TP53	Del_3q13.31	0.996	1
TRERF1	ZMIZ1	0.996	1
TRERF1	Xp-Del	0.996	1
ZBTB20	ZMIZ1	0.996	1
10p-Amp	Del_2q37.3	0.996	1
10p-Amp	Del_10q26.3	0.996	1
7q-Amp	9p-Del	0.996	1
11p-Del	Del_8q24.3	0.996	1
13q-Del	Del_3p21.31	0.996	1
13q-Del	Del_5p15.33	0.996	1
14q-Del	Amp_7p11.2	0.996	1
4q-Del	Del_19q13.41	0.996	1
6q-Del	Xq-Del	0.996	1
9p-Del	Del_3q13.31	0.996	1
Amp_2p24.3	Amp_7q32.3	0.996	1
Amp_10p15.3	Del_5p15.33	0.996	1
Amp_11q24.1	Del_Xq21.1	0.996	1
Amp_12q14.1	Amp_19p13.3	0.996	1
Amp_19p13.3	Del_9p21.3	0.996	1
Del_3q13.31	Del_11p15.5	0.996	1
Del_6q22.31	Del_Xq21.1	0.996	1
Del_7p22.3	Del_9p21.3	0.996	1
Del_9p21.3	Del_11p15.1	0.996	1
Del_14q24.3	Del_19q13.41	0.996	1
AGBL1	EGFR	0.997	1
AGBL1	PLXNA3	0.997	1
ANKRD36	IRS4	0.997	1
ANKRD36	8q-Amp	0.997	1
ANKRD36	Del_3p21.31	0.997	1
ARID1A	NIPBL	0.997	1
ARID1A	PIK3CA	0.997	1
ARID1A	1p-Del	0.997	1
ATRX	TRERF1	0.997	1
ATRX	Amp_10p15.3	0.997	1
ATRX	Del_5q34	0.997	1
BRAF	CUL4B	0.997	1
BRAF	DNMT3A	0.997	1
BRAF	PDGFRA	0.997	1
BRAF	PLXNA3	0.997	1
BRAF	PRX	0.997	1
BRAF	SETD2	0.997	1
BRAF	SLC6A3	0.997	1
BRAF	TNRC18	0.997	1
BRAF	ZMIZ1	0.997	1
CIB1	Amp_Xp11.22	0.997	1
CREBZF	Del_19q13.42	0.997	1
CUL4B	DDX5	0.997	1
CUL4B	EGFR	0.997	1
CUL4B	ZNF512B	0.997	1
DDX5	DNMT3A	0.997	1
DDX5	PDGFRA	0.997	1
DDX5	PLXNA3	0.997	1
DDX5	PRX	0.997	1
DDX5	SETD2	0.997	1
DDX5	SLC6A3	0.997	1
DDX5	STK19	0.997	1
DDX5	TNRC18	0.997	1
DDX5	ZMIZ1	0.997	1
DNMT3A	ZNF512B	0.997	1
EGFR	SETD2	0.997	1
FAM47C	SLC6A3	0.997	1
FUBP1	NAP1L2	0.997	1
FUBP1	SRPX	0.997	1
FUBP1	ZNF709	0.997	1
GAGE2A	PIK3R1	0.997	1
HTRA2	Xp-Del	0.997	1
IDH2	Del_4q34.3	0.997	1
IRS4	RET	0.997	1
KRAS	18p-Del	0.997	1
KRAS	18q-Del	0.997	1
KRAS	Amp_11q24.1	0.997	1
MYST4	7q-Amp	0.997	1
NEU2	PRX	0.997	1
NEU2	SETD2	0.997	1
NF1	6q-Del	0.997	1
NIPBL	ZMIZ1	0.997	1
PDGFRA	ZNF512B	0.997	1
PIK3R1	15q-Del	0.997	1
PLXNA3	ZNF512B	0.997	1
PRX	ZNF512B	0.997	1
PTEN	PTPN11	0.997	1
PTEN	RET	0.997	1
PTEN	Amp_7q32.3	0.997	1
PTPN11	10p-Del	0.997	1
RB1	Del_13q14.2	0.997	1
RBBP6	4q-Del	0.997	1
RBPJ	RET	0.997	1
ROBO3	STK19	0.997	1
ROBO3	ZMIZ1	0.997	1
SETD2	ZNF512B	0.997	1
SMOC1	Del_14q24.3	0.997	1
STK19	ZNF512B	0.997	1
TNRC18	ZNF512B	0.997	1
TP53	Amp_11q24.1	0.997	1
ZMIZ1	ZNF512B	0.997	1
ZMIZ1	Del_18q23	0.997	1
ZNF709	Del_11p15.1	0.997	1
10p-Amp	Del_13q14.2	0.997	1
7q-Amp	Del_9p23	0.997	1
8q-Amp	Del_2q37.3	0.997	1
10q-Del	13q-Del	0.997	1
10q-Del	Amp_4q12	0.997	1
12q-Del	Del_3p21.31	0.997	1
13q-Del	Del_9p21.3	0.997	1
13q-Del	Del_11p15.5	0.997	1
4q-Del	Del_3q29	0.997	1
4q-Del	Del_5q34	0.997	1
9p-Del	Amp_7q32.3	0.997	1
9q-Del	Del_4q34.3	0.997	1
Amp_7p11.2	Del_22q13.31	0.997	1
Amp_11q24.1	Del_3q29	0.997	1
Amp_12p13.32	Del_9p23	0.997	1
Amp_19p13.3	Del_6p25.3	0.997	1
Del_2q37.3	Del_Xq21.1	0.997	1
Del_3q29	Del_4q34.3	0.997	1
Del_4q34.3	Del_11p15.1	0.997	1
Del_18q23	Del_19q13.41	0.997	1
AGBL1	RBPJ	0.998	1
ANKRD36	MYT1	0.998	1
ANKRD36	ZNF512B	0.998	1
ANKRD36	Del_6q22.31	0.998	1
ANKRD36	Del_6q24.3	0.998	1
ARID1A	CIC	0.998	1
ARID1A	11q-Amp	0.998	1
ARID1A	Del_1p36.32	0.998	1
ARID2	NAP1L2	0.998	1
BRAF	IRS4	0.998	1
BRAF	NF1	0.998	1
BRAF	RET	0.998	1
CIB1	NUDT11	0.998	1
CIC	MYST4	0.998	1
CIC	RBBP6	0.998	1
CIC	SCN4A	0.998	1
CREBZF	FUBP1	0.998	1
CREBZF	Del_19q13.41	0.998	1
DDX5	IRS4	0.998	1
DDX5	RET	0.998	1
DNMT3A	NAP1L2	0.998	1
DNMT3A	NF1	0.998	1
GAGE2A	NOTCH1	0.998	1
HTRA2	RBPJ	0.998	1
HTRA2	6q-Del	0.998	1
IDH1	Del_11p15.1	0.998	1
IDH2	RBPJ	0.998	1
IDH2	Del_19q13.41	0.998	1
IRS4	MYT1	0.998	1
IRS4	PPL	0.998	1
IRS4	RB1	0.998	1
IRS4	RBBP6	0.998	1
IRS4	ROBO3	0.998	1
IRS4	SCN4A	0.998	1
IRS4	TRERF1	0.998	1
IRS4	ZBTB20	0.998	1
IRS4	ZNF512B	0.998	1
IRS4	Del_6q24.3	0.998	1
KRT3	Del_7p22.3	0.998	1
MYT1	PPL	0.998	1
MYT1	RB1	0.998	1
MYT1	RBBP6	0.998	1
MYT1	RET	0.998	1
MYT1	SCN4A	0.998	1
MYT1	SMARCA4	0.998	1
MYT1	TRERF1	0.998	1
MYT1	10p-Amp	0.998	1
NF1	SETD2	0.998	1
NF1	10q-Del	0.998	1
NRAS	NUDT11	0.998	1
NRAS	PRX	0.998	1
NUDT11	ZNF709	0.998	1
PIK3CA	Del_1p36.32	0.998	1
PIK3CA	Del_1p32.3	0.998	1
PPL	PTPN11	0.998	1
PPL	RB1	0.998	1
PPL	RET	0.998	1
PPL	SCN4A	0.998	1
PPL	SMARCA4	0.998	1
PPL	TRERF1	0.998	1
PTEN	Del_9p23	0.998	1
RB1	RBBP6	0.998	1
RB1	SCN4A	0.998	1
RB1	TRERF1	0.998	1
RB1	10q-Del	0.998	1
RB1	22q-Del	0.998	1
RBBP6	RET	0.998	1
RBBP6	SCN4A	0.998	1
RBBP6	TRERF1	0.998	1
RET	SCN4A	0.998	1
RET	TRERF1	0.998	1
RET	ZBTB20	0.998	1
RET	ZNF512B	0.998	1
ROBO3	Amp_2p24.3	0.998	1
SCN4A	TRERF1	0.998	1
SCN4A	Amp_2p24.3	0.998	1
SMOC1	Amp_Xp11.22	0.998	1
TMEM216	12q-Del	0.998	1
TP53	Amp_Xp11.22	0.998	1
TP53	Del_3p21.31	0.998	1
ZNF512B	Amp_2p24.3	0.998	1
10p-Amp	11p-Del	0.998	1
10p-Amp	Amp_4q12	0.998	1
10p-Amp	Amp_Xp11.22	0.998	1
11q-Amp	Amp_17q25.1	0.998	1
19p-Amp	Amp_3q26.33	0.998	1
7p-Amp	Amp_8q24.13	0.998	1
7q-Amp	8q-Amp	0.998	1
8q-Amp	Del_3q29	0.998	1
10q-Del	6q-Del	0.998	1
12q-Del	Amp_13q34	0.998	1
13q-Del	4q-Del	0.998	1
13q-Del	Del_11p15.1	0.998	1
4p-Del	Del_13q14.2	0.998	1
4q-Del	Amp_4q12	0.998	1
9p-Del	Del_5q34	0.998	1
9q-Del	Xp-Del	0.998	1
Xp-Del	Del_8q24.3	0.998	1
Xq-Del	Del_1q43	0.998	1
Amp_1q32.1	Amp_4q12	0.998	1
Amp_4q12	Del_8q24.3	0.998	1
Amp_7q31.2	Amp_8q24.13	0.998	1
Amp_11q24.1	Amp_13q34	0.998	1
Amp_12p13.32	Del_3p21.31	0.998	1
Del_2q37.3	Del_3p21.31	0.998	1
Del_2q37.3	Del_10q26.3	0.998	1
Del_3p21.31	Del_4q34.3	0.998	1
Del_3q13.31	Del_6p25.3	0.998	1
Del_3q29	Del_13q14.2	0.998	1
Del_4q34.3	Del_11p15.5	0.998	1
Del_6p25.3	Del_9p23	0.998	1
Del_6p25.3	Del_Xq21.1	0.998	1
Del_6q22.31	Del_7p22.3	0.998	1
Del_6q24.3	Del_7p22.3	0.998	1
Del_6q24.3	Del_22q13.31	0.998	1
Del_7p22.3	Del_Xq21.1	0.998	1
Del_9p23	Del_13q14.2	0.998	1
Del_11p15.1	Del_22q13.31	0.998	1
ARID1A	IRS4	0.999	1
ARID2	DNMT3A	0.999	1
ARID2	PDGFRA	0.999	1
ARID2	TNRC18	0.999	1
ATRX	Amp_2p24.3	0.999	1
BRAF	DDX5	0.999	1
BRAF	MYT1	0.999	1
BRAF	PPL	0.999	1
BRAF	PTEN	0.999	1
BRAF	RB1	0.999	1
BRAF	RBBP6	0.999	1
BRAF	SCN4A	0.999	1
BRAF	TRERF1	0.999	1
BRAF	ZNF512B	0.999	1
CIB1	RBPJ	0.999	1
CIB1	4q-Del	0.999	1
CIC	NIPBL	0.999	1
CIC	PIK3CA	0.999	1
CREBZF	NOTCH1	0.999	1
CREBZF	PIK3CA	0.999	1
CUL4B	PRX	0.999	1
DDX5	MYT1	0.999	1
DDX5	PPL	0.999	1
DDX5	RB1	0.999	1
DDX5	RBBP6	0.999	1
DDX5	SCN4A	0.999	1
DDX5	TRERF1	0.999	1
DDX5	ZNF512B	0.999	1
DNMT3A	PRX	0.999	1
DNMT3A	Del_Xq21.1	0.999	1
EGFR	SRPX	0.999	1
EGFR	9p-Del	0.999	1
EGFR	Amp_12q14.1	0.999	1
EGFR	Del_22q13.31	0.999	1
FUBP1	SCN4A	0.999	1
HTRA2	Xq-Del	0.999	1
IDH1	Del_2q37.3	0.999	1
IDH1	Del_12q12	0.999	1
IDH2	19q-Del	0.999	1
IDH2	Del_1p36.32	0.999	1
IDH2	Del_1p32.3	0.999	1
KRAS	11q-Amp	0.999	1
MYST4	NOTCH1	0.999	1
MYST4	NUDT11	0.999	1
MYST4	PLXNA3	0.999	1
MYST4	SLC6A3	0.999	1
MYST4	ZMIZ1	0.999	1
MYST4	19q-Del	0.999	1
MYST4	Del_1p36.32	0.999	1
MYT1	PIK3CA	0.999	1
MYT1	ZNF512B	0.999	1
NAP1L2	RBPJ	0.999	1
NF1	10p-Del	0.999	1
NF1	Del_9p21.3	0.999	1
NIPBL	Del_19q13.42	0.999	1
NUDT11	PRX	0.999	1
NUDT11	SETD2	0.999	1
NUDT11	SLC6A3	0.999	1
NUDT11	SMARCA4	0.999	1
PIK3CA	19q-Del	0.999	1
PIK3CA	1p-Del	0.999	1
PPL	ZBTB20	0.999	1
PPL	ZNF512B	0.999	1
PPL	Del_3q29	0.999	1
PRX	PTEN	0.999	1
PRX	SETD2	0.999	1
PRX	18p-Del	0.999	1
PRX	18q-Del	0.999	1
PTEN	19p-Amp	0.999	1
PTEN	7p-Amp	0.999	1
PTEN	7q-Amp	0.999	1
PTEN	22q-Del	0.999	1
PTEN	Amp_3q26.33	0.999	1
PTEN	Amp_7q31.2	0.999	1
RB1	ZNF512B	0.999	1
RB1	10p-Del	0.999	1
RB1	13q-Del	0.999	1
RBBP6	ZNF512B	0.999	1
RET	14q-Del	0.999	1
ROBO3	SCN4A	0.999	1
SCN4A	ZNF512B	0.999	1
SMARCA4	ZNF512B	0.999	1
SMOC1	Del_6q22.31	0.999	1
SMOC1	Del_6q24.3	0.999	1
STK19	TMEM216	0.999	1
STK19	19p-Amp	0.999	1
STK19	7q-Amp	0.999	1
STK19	Amp_7q32.3	0.999	1
TRERF1	ZNF512B	0.999	1
ZNF709	11p-Del	0.999	1
10p-Amp	Amp_8q24.13	0.999	1
10p-Amp	Del_3p21.31	0.999	1
10p-Amp	Del_7p22.3	0.999	1
10p-Amp	Del_8q24.3	0.999	1
10p-Amp	Del_11p15.1	0.999	1
7q-Amp	Amp_8q24.13	0.999	1
10p-Del	6q-Del	0.999	1
11p-Del	Amp_10p15.3	0.999	1
11p-Del	Del_2q37.3	0.999	1
13q-Del	Amp_4q12	0.999	1
13q-Del	Del_4q34.3	0.999	1
13q-Del	Del_10q26.3	0.999	1
15q-Del	Del_19q13.42	0.999	1
18p-Del	Del_19q13.42	0.999	1
1p-Del	Del_18q23	0.999	1
22q-Del	Amp_7p11.2	0.999	1
22q-Del	Del_11p15.5	0.999	1
4q-Del	9q-Del	0.999	1
4q-Del	Del_1p32.3	0.999	1
6q-Del	Xp-Del	0.999	1
6q-Del	Del_10q26.3	0.999	1
6q-Del	Del_Xq21.1	0.999	1
9p-Del	Amp_4q12	0.999	1
9p-Del	Amp_7p11.2	0.999	1
9p-Del	Amp_12p13.32	0.999	1
9p-Del	Del_6p25.3	0.999	1
9q-Del	Amp_1q32.1	0.999	1
9q-Del	Del_8q24.3	0.999	1
Xp-Del	Del_6q22.31	0.999	1
Xp-Del	Del_6q24.3	0.999	1
Xp-Del	Del_Xq21.1	0.999	1
Xq-Del	Del_6q22.31	0.999	1
Xq-Del	Del_6q24.3	0.999	1
Amp_3q26.33	Del_3p21.31	0.999	1
Amp_4q12	Amp_12p13.32	0.999	1
Amp_4q12	Del_11p15.5	0.999	1
Amp_4q12	Del_11p15.1	0.999	1
Amp_7q32.3	Amp_8q24.13	0.999	1
Amp_8q24.13	Amp_12p13.32	0.999	1
Amp_10p15.3	Amp_12p13.32	0.999	1
Amp_10p15.3	Del_3p21.31	0.999	1
Amp_10p15.3	Del_11p15.1	0.999	1
Amp_12p13.32	Del_2q37.3	0.999	1
Amp_12q14.1	Amp_13q34	0.999	1
Amp_12q14.1	Amp_19p13.2	0.999	1
Amp_13q34	Del_3p21.31	0.999	1
Amp_13q34	Del_11p15.5	0.999	1
Amp_13q34	Del_13q14.2	0.999	1
Amp_17q25.1	Del_2q37.3	0.999	1
Amp_19p13.3	Del_10q26.3	0.999	1
Del_1p36.32	Del_18q23	0.999	1
Del_3p21.31	Del_3q29	0.999	1
Del_3p21.31	Del_9p21.3	0.999	1
Del_3p21.31	Del_11p15.1	0.999	1
Del_3q29	Del_6p25.3	0.999	1
Del_4q34.3	Del_Xq21.1	0.999	1
Del_5p15.33	Del_5q34	0.999	1
Del_5p15.33	Del_9p23	0.999	1
Del_5p15.33	Del_9p21.3	0.999	1
Del_6q22.31	Del_22q13.31	0.999	1
Del_6q24.3	Del_10q26.3	0.999	1
Del_10q26.3	Del_13q14.2	0.999	1
Del_14q24.3	Del_22q13.31	0.999	1
AGBL1	19p-Amp	1	1
AGBL1	Amp_19p13.2	1	1
ARID1A	DNMT3A	1	1
ARID1A	ZMIZ1	1	1
ARID1A	ZNF512B	1	1
ARID2	RBPJ	1	1
ARID2	RET	1	1
ATRX	IDH1	1	1
ATRX	TP53	1	1
ATRX	8q-Amp	1	1
ATRX	11p-Del	1	1
ATRX	12q-Del	1	1
ATRX	Amp_8q24.13	1	1
ATRX	Amp_12p13.32	1	1
ATRX	Amp_Xp11.22	1	1
ATRX	Del_2q37.3	1	1
ATRX	Del_5p15.33	1	1
ATRX	Del_11p15.5	1	1
ATRX	Del_11p15.1	1	1
BRAF	STK19	1	1
CIB1	HTRA2	1	1
CIB1	TMEM216	1	1
CIB1	4p-Del	1	1
CIB1	Amp_4q12	1	1
CIB1	Del_4q34.3	1	1
CIC	CREBZF	1	1
CIC	FUBP1	1	1
CIC	IDH1	1	1
CIC	NOTCH1	1	1
CIC	15q-Del	1	1
CIC	19q-Del	1	1
CIC	1p-Del	1	1
CIC	4p-Del	1	1
CIC	4q-Del	1	1
CIC	Del_1p36.32	1	1
CIC	Del_1p32.3	1	1
CIC	Del_19q13.41	1	1
CIC	Del_19q13.42	1	1
CREBZF	IDH1	1	1
CREBZF	19q-Del	1	1
CUL4B	PLXNA3	1	1
CUL4B	PPL	1	1
CUL4B	TRERF1	1	1
DDX5	FAM47C	1	1
DNMT3A	IRS4	1	1
DNMT3A	TNRC18	1	1
DNMT3A	ZMIZ1	1	1
DNMT3A	Xp-Del	1	1
EGFR	PTEN	1	1
EGFR	19p-Amp	1	1
EGFR	7p-Amp	1	1
EGFR	7q-Amp	1	1
EGFR	10p-Del	1	1
EGFR	10q-Del	1	1
EGFR	14q-Del	1	1
EGFR	22q-Del	1	1
EGFR	Amp_1q32.1	1	1
EGFR	Amp_7p11.2	1	1
EGFR	Amp_7q31.2	1	1
EGFR	Amp_7q32.3	1	1
EGFR	Amp_19p13.2	1	1
EGFR	Del_9p23	1	1
EGFR	Del_9p21.3	1	1
EGFR	Del_10q26.3	1	1
EMG1	IDH1	1	1
FAM47C	ZNF512B	1	1
FUBP1	IDH1	1	1
FUBP1	NOTCH1	1	1
FUBP1	PIK3R1	1	1
FUBP1	19q-Del	1	1
FUBP1	1p-Del	1	1
FUBP1	Del_1p36.32	1	1
FUBP1	Del_1p32.3	1	1
FUBP1	Del_19q13.41	1	1
FUBP1	Del_19q13.42	1	1
HTRA2	STK19	1	1
HTRA2	TMEM216	1	1
HTRA2	Del_6q22.31	1	1
HTRA2	Del_6q24.3	1	1
HTRA2	Del_7p22.3	1	1
IDH1	KRAS	1	1
IDH1	NOTCH1	1	1
IDH1	NRAS	1	1
IDH1	ROBO3	1	1
IDH1	SMOC1	1	1
IDH1	TP53	1	1
IDH1	ZNF709	1	1
IDH1	10p-Amp	1	1
IDH1	12q-Del	1	1
IDH1	19q-Del	1	1
IDH1	1p-Del	1	1
IDH1	Amp_2p24.3	1	1
IDH1	Amp_8q24.13	1	1
IDH1	Amp_10p15.3	1	1
IDH1	Amp_12p13.32	1	1
IDH1	Amp_Xp11.22	1	1
IDH1	Del_1p36.32	1	1
IDH1	Del_1p32.3	1	1
IDH1	Del_1q43	1	1
IDH1	Del_11p15.5	1	1
IDH1	Del_19q13.41	1	1
IDH1	Del_19q13.42	1	1
IDH2	1p-Del	1	1
IRS4	PRX	1	1
IRS4	SLC6A3	1	1
IRS4	ZMIZ1	1	1
KRAS	MYST4	1	1
KRAS	PLXNA3	1	1
KRAS	ZMIZ1	1	1
KRT3	ZNF709	1	1
MYST4	RBBP6	1	1
MYT1	PRX	1	1
MYT1	TP53	1	1
NF1	PTEN	1	1
NF1	RB1	1	1
NF1	14q-Del	1	1
NF1	22q-Del	1	1
NF1	Del_6p25.3	1	1
NF1	Del_22q13.31	1	1
NIPBL	19q-Del	1	1
NIPBL	1p-Del	1	1
NIPBL	4p-Del	1	1
NIPBL	Del_1p36.32	1	1
NIPBL	Del_1p32.3	1	1
NIPBL	Del_19q13.41	1	1
NOTCH1	NUDT11	1	1
NOTCH1	19q-Del	1	1
NOTCH1	1p-Del	1	1
NOTCH1	Del_1p36.32	1	1
NOTCH1	Del_1p32.3	1	1
NOTCH1	Del_19q13.41	1	1
NOTCH1	Del_19q13.42	1	1
NUDT11	RBBP6	1	1
PDGFRA	SLC6A3	1	1
PDGFRA	Amp_4q12	1	1
PIK3R1	Del_19q13.41	1	1
PIK3R1	Del_19q13.42	1	1
PLXNA3	PPL	1	1
PLXNA3	RB1	1	1
PLXNA3	SETD2	1	1
PLXNA3	ZMIZ1	1	1
PPL	RBBP6	1	1
PRX	ZMIZ1	1	1
PTEN	RB1	1	1
PTEN	10p-Del	1	1
PTEN	10q-Del	1	1
PTEN	9p-Del	1	1
PTEN	Amp_1q32.1	1	1
PTEN	Amp_7p11.2	1	1
PTEN	Amp_19p13.2	1	1
PTEN	Del_9p21.3	1	1
PTEN	Del_10q26.3	1	1
PTEN	Del_22q13.31	1	1
PTPN11	Amp_3q26.33	1	1
RB1	RET	1	1
RB1	SETD2	1	1
RB1	14q-Del	1	1
RBBP6	ZMIZ1	1	1
RBPJ	TMEM216	1	1
RBPJ	4p-Del	1	1
RBPJ	4q-Del	1	1
RBPJ	Del_4q34.3	1	1
SCN4A	STK19	1	1
SLC6A3	ZNF512B	1	1
SMOC1	6q-Del	1	1
SRPX	Amp_1q22	1	1
STK19	Amp_2p24.3	1	1
STK19	Amp_7q31.2	1	1
TP53	10p-Amp	1	1
TP53	8q-Amp	1	1
TP53	11p-Del	1	1
TP53	12q-Del	1	1
TP53	Amp_2p24.3	1	1
TP53	Amp_8q24.13	1	1
TP53	Amp_10p15.3	1	1
TP53	Amp_12p13.32	1	1
TP53	Del_2q37.3	1	1
TP53	Del_3q29	1	1
TP53	Del_5p15.33	1	1
TP53	Del_5q34	1	1
TP53	Del_6q22.31	1	1
TP53	Del_6q24.3	1	1
TP53	Del_8q24.3	1	1
TP53	Del_11p15.5	1	1
TP53	Del_11p15.1	1	1
TP53	Del_12q12	1	1
TP53	Del_Xq21.1	1	1
ZBTB20	19q-Del	1	1
ZBTB20	1p-Del	1	1
ZBTB20	Del_1p36.32	1	1
ZBTB20	Del_1p32.3	1	1
ZBTB20	Del_19q13.41	1	1
ZBTB20	Del_19q13.42	1	1
10p-Amp	Amp_10p15.3	1	1
10p-Amp	Del_4q34.3	1	1
10p-Amp	Del_5q34	1	1
10p-Amp	Del_11p15.5	1	1
11q-Amp	Amp_11q24.1	1	1
19p-Amp	7p-Amp	1	1
19p-Amp	7q-Amp	1	1
19p-Amp	10p-Del	1	1
19p-Amp	10q-Del	1	1
19p-Amp	Amp_1q32.1	1	1
19p-Amp	Amp_7p11.2	1	1
19p-Amp	Amp_7q31.2	1	1
19p-Amp	Amp_7q32.3	1	1
19p-Amp	Amp_12q14.1	1	1
19p-Amp	Amp_19p13.3	1	1
19p-Amp	Amp_19p13.2	1	1
19p-Amp	Del_9p21.3	1	1
19p-Amp	Del_10q26.3	1	1
7p-Amp	7q-Amp	1	1
7p-Amp	8q-Amp	1	1
7p-Amp	10p-Del	1	1
7p-Amp	10q-Del	1	1
7p-Amp	Amp_1q32.1	1	1
7p-Amp	Amp_3q26.33	1	1
7p-Amp	Amp_7p11.2	1	1
7p-Amp	Amp_7q31.2	1	1
7p-Amp	Amp_7q32.3	1	1
7p-Amp	Amp_12q14.1	1	1
7p-Amp	Amp_19p13.3	1	1
7p-Amp	Amp_19p13.2	1	1
7p-Amp	Del_9p21.3	1	1
7p-Amp	Del_10q26.3	1	1
7q-Amp	10p-Del	1	1
7q-Amp	10q-Del	1	1
7q-Amp	Amp_1q32.1	1	1
7q-Amp	Amp_3q26.33	1	1
7q-Amp	Amp_7p11.2	1	1
7q-Amp	Amp_7q31.2	1	1
7q-Amp	Amp_7q32.3	1	1
7q-Amp	Amp_12q14.1	1	1
7q-Amp	Amp_19p13.3	1	1
7q-Amp	Amp_19p13.2	1	1
7q-Amp	Del_9p21.3	1	1
7q-Amp	Del_10q26.3	1	1
8q-Amp	Amp_7q31.2	1	1
8q-Amp	Amp_7q32.3	1	1
8q-Amp	Amp_8q24.13	1	1
10p-Del	10q-Del	1	1
10p-Del	14q-Del	1	1
10p-Del	22q-Del	1	1
10p-Del	9p-Del	1	1
10p-Del	Amp_1q32.1	1	1
10p-Del	Amp_3q26.33	1	1
10p-Del	Amp_7p11.2	1	1
10p-Del	Amp_7q31.2	1	1
10p-Del	Amp_7q32.3	1	1
10p-Del	Amp_12q14.1	1	1
10p-Del	Amp_19p13.3	1	1
10p-Del	Amp_19p13.2	1	1
10p-Del	Del_9p23	1	1
10p-Del	Del_9p21.3	1	1
10p-Del	Del_10q26.3	1	1
10p-Del	Del_14q24.3	1	1
10p-Del	Del_22q13.31	1	1
10q-Del	14q-Del	1	1
10q-Del	22q-Del	1	1
10q-Del	9p-Del	1	1
10q-Del	Amp_1q32.1	1	1
10q-Del	Amp_3q26.33	1	1
10q-Del	Amp_7p11.2	1	1
10q-Del	Amp_7q31.2	1	1
10q-Del	Amp_7q32.3	1	1
10q-Del	Amp_12q14.1	1	1
10q-Del	Amp_19p13.3	1	1
10q-Del	Amp_19p13.2	1	1
10q-Del	Del_9p23	1	1
10q-Del	Del_9p21.3	1	1
10q-Del	Del_10q26.3	1	1
10q-Del	Del_14q24.3	1	1
10q-Del	Del_22q13.31	1	1
11p-Del	12q-Del	1	1
11p-Del	Amp_4q12	1	1
11p-Del	Amp_12p13.32	1	1
11p-Del	Amp_Xp11.22	1	1
11p-Del	Del_3q29	1	1
11p-Del	Del_5p15.33	1	1
11p-Del	Del_5q34	1	1
11p-Del	Del_11p15.5	1	1
11p-Del	Del_11p15.1	1	1
11p-Del	Del_12q12	1	1
12q-Del	Del_5q34	1	1
12q-Del	Del_11p15.5	1	1
12q-Del	Del_11p15.1	1	1
12q-Del	Del_12q12	1	1
13q-Del	22q-Del	1	1
13q-Del	Del_13q14.2	1	1
13q-Del	Del_22q13.31	1	1
14q-Del	22q-Del	1	1
14q-Del	6q-Del	1	1
14q-Del	Del_6p25.3	1	1
14q-Del	Del_6q22.31	1	1
14q-Del	Del_6q24.3	1	1
14q-Del	Del_9p21.3	1	1
14q-Del	Del_10q26.3	1	1
14q-Del	Del_14q24.3	1	1
14q-Del	Del_22q13.31	1	1
15q-Del	19q-Del	1	1
15q-Del	1p-Del	1	1
15q-Del	Del_1p36.32	1	1
15q-Del	Del_1p32.3	1	1
15q-Del	Del_19q13.41	1	1
18p-Del	18q-Del	1	1
18p-Del	19q-Del	1	1
18p-Del	1p-Del	1	1
18p-Del	Del_1p36.32	1	1
18p-Del	Del_1p32.3	1	1
18p-Del	Del_18q23	1	1
18p-Del	Del_19q13.41	1	1
18q-Del	19q-Del	1	1
18q-Del	1p-Del	1	1
18q-Del	Del_1p36.32	1	1
18q-Del	Del_1p32.3	1	1
18q-Del	Del_18q23	1	1
18q-Del	Del_19q13.41	1	1
18q-Del	Del_19q13.42	1	1
19q-Del	1p-Del	1	1
19q-Del	4p-Del	1	1
19q-Del	4q-Del	1	1
19q-Del	Del_1p36.32	1	1
19q-Del	Del_1p32.3	1	1
19q-Del	Del_18q23	1	1
19q-Del	Del_19q13.41	1	1
19q-Del	Del_19q13.42	1	1
1p-Del	4p-Del	1	1
1p-Del	4q-Del	1	1
1p-Del	Del_1p36.32	1	1
1p-Del	Del_1p32.3	1	1
1p-Del	Del_19q13.41	1	1
1p-Del	Del_19q13.42	1	1
22q-Del	6q-Del	1	1
22q-Del	9p-Del	1	1
22q-Del	Del_3p21.31	1	1
22q-Del	Del_3q29	1	1
22q-Del	Del_6p25.3	1	1
22q-Del	Del_6q22.31	1	1
22q-Del	Del_6q24.3	1	1
22q-Del	Del_9p23	1	1
22q-Del	Del_9p21.3	1	1
22q-Del	Del_10q26.3	1	1
22q-Del	Del_13q14.2	1	1
22q-Del	Del_14q24.3	1	1
22q-Del	Del_22q13.31	1	1
4p-Del	4q-Del	1	1
4p-Del	Del_1p36.32	1	1
4p-Del	Del_1p32.3	1	1
4p-Del	Del_4q34.3	1	1
4p-Del	Del_19q13.41	1	1
4p-Del	Del_19q13.42	1	1
4q-Del	Del_1p36.32	1	1
4q-Del	Del_4q34.3	1	1
6q-Del	9p-Del	1	1
6q-Del	Del_6p25.3	1	1
6q-Del	Del_6q22.31	1	1
6q-Del	Del_6q24.3	1	1
6q-Del	Del_9p23	1	1
6q-Del	Del_9p21.3	1	1
6q-Del	Del_14q24.3	1	1
6q-Del	Del_22q13.31	1	1
9p-Del	9q-Del	1	1
9p-Del	Amp_1q32.1	1	1
9p-Del	Del_3p21.31	1	1
9p-Del	Del_6q22.31	1	1
9p-Del	Del_6q24.3	1	1
9p-Del	Del_7p22.3	1	1
9p-Del	Del_9p23	1	1
9p-Del	Del_9p21.3	1	1
9p-Del	Del_10q26.3	1	1
9p-Del	Del_14q24.3	1	1
9p-Del	Del_22q13.31	1	1
9q-Del	Amp_4q12	1	1
9q-Del	Del_9p23	1	1
9q-Del	Del_9p21.3	1	1
Xp-Del	Xq-Del	1	1
Xq-Del	Del_Xq21.1	1	1
Amp_1q22	Amp_1q32.1	1	1
Amp_1q32.1	Amp_7p11.2	1	1
Amp_1q32.1	Amp_7q31.2	1	1
Amp_1q32.1	Amp_7q32.3	1	1
Amp_1q32.1	Amp_12q14.1	1	1
Amp_1q32.1	Amp_19p13.2	1	1
Amp_1q32.1	Del_9p23	1	1
Amp_1q32.1	Del_9p21.3	1	1
Amp_1q32.1	Del_10q26.3	1	1
Amp_3q26.33	Amp_7p11.2	1	1
Amp_3q26.33	Amp_7q31.2	1	1
Amp_3q26.33	Amp_7q32.3	1	1
Amp_3q26.33	Amp_12q14.1	1	1
Amp_3q26.33	Del_10q26.3	1	1
Amp_4q12	Amp_10p15.3	1	1
Amp_4q12	Amp_12q14.1	1	1
Amp_4q12	Del_3q29	1	1
Amp_4q12	Del_4q34.3	1	1
Amp_4q12	Del_5q34	1	1
Amp_4q12	Del_9p21.3	1	1
Amp_4q12	Del_10q26.3	1	1
Amp_4q12	Del_13q14.2	1	1
Amp_7p11.2	Amp_7q31.2	1	1
Amp_7p11.2	Amp_7q32.3	1	1
Amp_7p11.2	Amp_12q14.1	1	1
Amp_7p11.2	Amp_19p13.3	1	1
Amp_7p11.2	Amp_19p13.2	1	1
Amp_7p11.2	Del_9p23	1	1
Amp_7p11.2	Del_9p21.3	1	1
Amp_7p11.2	Del_10q26.3	1	1
Amp_7q31.2	Amp_7q32.3	1	1
Amp_7q31.2	Amp_12q14.1	1	1
Amp_7q31.2	Amp_19p13.3	1	1
Amp_7q31.2	Amp_19p13.2	1	1
Amp_7q31.2	Del_9p21.3	1	1
Amp_7q31.2	Del_10q26.3	1	1
Amp_7q32.3	Amp_12q14.1	1	1
Amp_7q32.3	Amp_19p13.3	1	1
Amp_7q32.3	Amp_19p13.2	1	1
Amp_7q32.3	Del_9p21.3	1	1
Amp_7q32.3	Del_10q26.3	1	1
Amp_8q24.13	Amp_10p15.3	1	1
Amp_8q24.13	Amp_Xp11.22	1	1
Amp_8q24.13	Del_5p15.33	1	1
Amp_8q24.13	Del_11p15.5	1	1
Amp_10p15.3	Del_4q34.3	1	1
Amp_10p15.3	Del_8q24.3	1	1
Amp_10p15.3	Del_11p15.5	1	1
Amp_12p13.32	Del_3q29	1	1
Amp_12p13.32	Del_4q34.3	1	1
Amp_12p13.32	Del_5p15.33	1	1
Amp_12p13.32	Del_5q34	1	1
Amp_12p13.32	Del_11p15.5	1	1
Amp_12p13.32	Del_11p15.1	1	1
Amp_12p13.32	Del_22q13.31	1	1
Amp_12q14.1	Del_10q26.3	1	1
Amp_13q34	Del_10q26.3	1	1
Amp_13q34	Del_11p15.1	1	1
Amp_17q25.1	Del_7p22.3	1	1
Amp_19p13.3	Amp_19p13.2	1	1
Amp_19p13.2	Del_9p21.3	1	1
Amp_19p13.2	Del_10q26.3	1	1
Amp_Xp11.22	Del_5p15.33	1	1
Amp_Xp11.22	Del_11p15.5	1	1
Amp_Xp11.22	Del_11p15.1	1	1
Del_1p36.32	Del_1p32.3	1	1
Del_1p36.32	Del_19q13.41	1	1
Del_1p36.32	Del_19q13.42	1	1
Del_1p32.3	Del_18q23	1	1
Del_1p32.3	Del_19q13.41	1	1
Del_1p32.3	Del_19q13.42	1	1
Del_2q37.3	Del_11p15.5	1	1
Del_2q37.3	Del_11p15.1	1	1
Del_3p21.31	Del_3q13.31	1	1
Del_3p21.31	Del_9p23	1	1
Del_3p21.31	Del_11p15.5	1	1
Del_3p21.31	Del_22q13.31	1	1
Del_3q13.31	Del_3q29	1	1
Del_3q29	Del_8q24.3	1	1
Del_3q29	Del_11p15.5	1	1
Del_3q29	Del_11p15.1	1	1
Del_3q29	Del_22q13.31	1	1
Del_4q34.3	Del_5q34	1	1
Del_4q34.3	Del_13q14.2	1	1
Del_5p15.33	Del_11p15.5	1	1
Del_5p15.33	Del_11p15.1	1	1
Del_5q34	Del_11p15.5	1	1
Del_5q34	Del_11p15.1	1	1
Del_5q34	Del_12q12	1	1
Del_5q34	Del_13q14.2	1	1
Del_6p25.3	Del_6q22.31	1	1
Del_6p25.3	Del_6q24.3	1	1
Del_6p25.3	Del_8q24.3	1	1
Del_6p25.3	Del_9p21.3	1	1
Del_6p25.3	Del_10q26.3	1	1
Del_6p25.3	Del_22q13.31	1	1
Del_6q22.31	Del_6q24.3	1	1
Del_6q22.31	Del_9p23	1	1
Del_6q22.31	Del_9p21.3	1	1
Del_6q22.31	Del_10q26.3	1	1
Del_6q22.31	Del_14q24.3	1	1
Del_6q24.3	Del_9p23	1	1
Del_6q24.3	Del_9p21.3	1	1
Del_6q24.3	Del_14q24.3	1	1
Del_7p22.3	Del_9p23	1	1
Del_9p23	Del_9p21.3	1	1
Del_9p23	Del_10q26.3	1	1
Del_9p23	Del_14q24.3	1	1
Del_9p23	Del_22q13.31	1	1
Del_9p21.3	Del_10q26.3	1	1
Del_9p21.3	Del_13q14.2	1	1
Del_9p21.3	Del_14q24.3	1	1
Del_9p21.3	Del_22q13.31	1	1
Del_10q26.3	Del_14q24.3	1	1
Del_10q26.3	Del_22q13.31	1	1
Del_11p15.5	Del_11p15.1	1	1
Del_11p15.5	Del_12q12	1	1
Del_11p15.5	Del_13q14.2	1	1
Del_11p15.5	Del_22q13.31	1	1
Del_11p15.1	Del_12q12	1	1
Del_11p15.1	Del_13q14.2	1	1
Del_13q14.2	Del_22q13.31	1	1
Del_19q13.41	Del_19q13.42	1	1
1p-Del	Del_10q26.3	1.01e-13	1
19q-Del	Del_11p15.5	1.03e-08	1
TP53	Del_1p32.3	1.04e-47	1
TP53	10q-Del	1.06e-09	1
10p-Del	19q-Del	1.11e-10	1
Del_1p36.32	Del_9p21.3	1.13e-06	1
IDH1	PTEN	1.14e-10	1
CIC	10p-Del	1.16e-06	1
1p-Del	Del_2q37.3	1.16e-06	1
Amp_7p11.2	Del_19q13.42	1.16e-08	1
11p-Del	Del_1p32.3	1.1e-07	1
Del_10q26.3	Del_19q13.41	1.24e-09	1
EGFR	IDH1	1.25e-19	1
IDH1	14q-Del	1.28e-05	1
10q-Del	Del_19q13.42	1.28e-11	1
ATRX	Del_1p32.3	1.31e-40	1
ATRX	Del_1p36.32	1.34e-37	1
ATRX	Del_19q13.42	1.36e-12	1
Del_1p36.32	Del_10q26.3	1.37e-08	1
ATRX	10q-Del	1.3e-10	1
1p-Del	Amp_8q24.13	1.41e-06	1
IDH1	7q-Amp	1.54e-08	1
10p-Del	1p-Del	1.5e-08	1
1p-Del	Del_11p15.1	1.65e-07	1
EGFR	TP53	1.69e-08	1
CIC	Amp_8q24.13	1.6e-05	1
19q-Del	Amp_8q24.13	1.73e-05	1
IDH1	Amp_7q31.2	1.84e-05	1
CIC	TP53	1.88e-27	1
10p-Amp	Del_1p36.32	1.89e-05	1
Del_1p36.32	Del_6q24.3	1.8e-06	1
Amp_8q24.13	Del_1p36.32	1.92e-06	1
IDH1	22q-Del	1.93e-07	1
TP53	Del_19q13.42	1.97e-15	1
19q-Del	Del_22q13.31	2.01e-06	1
10p-Amp	Del_1p32.3	2.05e-05	1
Del_1p32.3	Del_6q24.3	2.05e-06	1
10p-Del	Del_19q13.41	2.12e-11	1
TP53	Del_19q13.41	2.18e-18	1
ATRX	FUBP1	2.1e-08	1
IDH1	NF1	2.1e-09	1
IDH1	Amp_12q14.1	2.28e-06	1
11p-Del	Del_1p36.32	2.36e-05	1
Amp_10p15.3	Del_1p36.32	2.38e-07	1
IDH1	IDH2	2.41e-14	1
ATRX	18q-Del	2.4e-06	1
1p-Del	Del_22q13.31	2.62e-07	1
Del_1p36.32	Del_2q37.3	2.64e-07	1
Amp_10p15.3	Del_1p32.3	2.66e-07	1
10q-Del	19q-Del	2.82e-11	1
Amp_12p13.32	Del_1p32.3	2.83e-05	1
Amp_8q24.13	Del_1p32.3	2.86e-07	1
1p-Del	6q-Del	2.97e-06	1
Del_1p32.3	Del_2q37.3	2.99e-07	1
11p-Del	19q-Del	3.19e-05	1
CIC	Del_9p21.3	3.24e-06	1
FUBP1	Del_10q26.3	3.27e-05	1
19q-Del	Amp_7p11.2	3.36e-06	1
ATRX	CIC	3.36e-19	1
19q-Del	Amp_12p13.32	3.38e-05	1
CIC	Del_6q24.3	3.39e-06	1
IDH1	Del_9p21.3	3.44e-10	1
IDH1	10p-Del	3.47e-41	1
1p-Del	Amp_7p11.2	3.52e-06	1
Del_1p32.3	Del_11p15.1	3.54e-08	1
Amp_10p15.3	Del_19q13.41	3.55e-05	1
1p-Del	Del_9p23	3.56e-05	1
10q-Del	Del_19q13.41	3.59e-12	1
Del_9p21.3	Del_19q13.41	3.67e-05	1
19q-Del	Del_11p15.1	3.69e-05	1
EGFR	Del_19q13.42	3.8e-07	1
Del_1p36.32	Del_11p15.1	3.92e-06	1
11p-Del	1p-Del	3.93e-07	1
TP53	1p-Del	3.94e-47	1
Del_10q26.3	Del_19q13.42	3.9e-09	1
ATRX	PIK3CA	4.08e-05	1
IDH1	Del_10q26.3	4.17e-19	1
CIC	Del_10q26.3	4.28e-09	1
ATRX	19q-Del	4.35e-26	1
10q-Del	1p-Del	4.44e-09	1
IDH1	19p-Amp	4.59e-07	1
10p-Del	Del_19q13.42	4.75e-12	1
Del_1p32.3	Del_9p21.3	4.7e-06	1
Del_1p32.3	Del_5p15.33	4.82e-05	1
10p-Amp	1p-Del	4.83e-05	1
1p-Del	22q-Del	4.83e-05	1
CIC	Amp_7q31.2	5.01e-06	1
CIC	10q-Del	5.13e-07	1
22q-Del	Del_19q13.42	5.32e-05	1
IDH1	Amp_19p13.2	5.38e-07	1
ATRX	EGFR	5.56e-07	1
Amp_7p11.2	Del_19q13.41	5.83e-08	1
ATRX	Del_19q13.41	5.86e-14	1
Del_1p36.32	Del_11p15.5	5.99e-09	1
CIC	Del_22q13.31	6.16e-05	1
IDH1	Amp_7p11.2	6.33e-24	1
Del_1p36.32	Del_6q22.31	6.49e-07	1
IDH1	10q-Del	6.69e-37	1
Del_1p32.3	Del_9p23	6.81e-05	1
19q-Del	Amp_10p15.3	6.81e-06	1
1p-Del	Del_11p15.5	6.84e-12	1
FUBP1	TP53	6.9e-08	1
Del_9p21.3	Del_19q13.42	7.05e-06	1
Del_1p32.3	Del_11p15.5	7.26e-13	1
19q-Del	Del_10q26.3	7.26e-15	1
IDH1	Amp_1q32.1	7.33e-09	1
ATRX	10p-Del	7.38e-13	1
Del_1p32.3	Del_6q22.31	7.39e-07	1
1p-Del	Amp_12p13.32	7.44e-05	1
IDH1	Del_22q13.31	7.45e-06	1
1p-Del	Del_6q24.3	7.45e-08	1
CIC	Del_11p15.5	7.52e-08	1
CIC	Del_6q22.31	7.53e-06	1
CIC	Amp_7q32.3	7.56e-07	1
ATRX	1p-Del	7.59e-37	1
IDH1	Amp_7q32.3	7.98e-06	1
CIC	11p-Del	7.99e-05	1
TP53	19q-Del	7.9e-36	1
EGFR	Del_19q13.41	8.53e-06	1
Del_1p32.3	Del_10q26.3	8.64e-08	1
TP53	Del_1p36.32	8.81e-50	1
1p-Del	Amp_10p15.3	8.86e-07	1
TP53	Amp_19p13.2	8.9e-05	1
CIC	Del_11p15.1	9.01e-05	1
1p-Del	Del_9p21.3	9.04e-10	1
TP53	10p-Del	9.18e-11	1
IDH1	7p-Amp	9.1e-11	1
1p-Del	Del_6q22.31	9.66e-09	1
19q-Del	Del_9p21.3	9.74e-09	1
EGFR	19q-Del	9.83e-05	1
22q-Del	Del_19q13.41	9.87e-05	1
