Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	markersfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	markersfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	hg19_GENCODE_v18_20140127.mat	GISTIC	Level_4	matlab	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	CNV.hg19.bypos.111213.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:refgene_file	hg19_GENCODE_v18_20140127.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	markersfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	markersfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	hg19_GENCODE_v18_20140127.mat	GISTIC	Level_4	matlab	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	CNV.hg19.bypos.111213.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
PrepareGisticDNASeq:cna.lowpass.dnaseqc.harvard.segment	LGG-TP.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	gdac.broadinstitute.org_LGG-TP.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	markersfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	markersfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	hg19_GENCODE_v18_20140127.mat	GISTIC	Level_4	matlab	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	CNV.hg19.bypos.111213.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	amp_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	del_qplot.fig	GISTIC	Level_4	fig	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
Gistic2_Analysis:cnv_files	CNV.hg19.bypos.111213.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10389:14	CopyNumberLowPass_Gistic2_2015082100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG-TP.CopyNumberLowPass_Gistic2.Level_4.2015082100.0.0	yes
