[1] "ofn"       "-oTLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/20146758/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/20067755/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=513, common to both=513
[1]  84 513
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
           398            115 
  IDH1 MUTATED IDH1 WILD-TYPE 
           398            115 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           248            265 
  TP53 MUTATED TP53 WILD-TYPE 
           248            265 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
           195            318 
  ATRX MUTATED ATRX WILD-TYPE 
           195            318 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
          108           405 
  CIC MUTATED CIC WILD-TYPE 
          108           405 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              471 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              471 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            493 
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            493 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              22              491 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              22              491 
[1] "FUBP1 MUTATION ANALYSIS"
[1] 3
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             466 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             466 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           33           480 
  NF1 MUTATED NF1 WILD-TYPE 
           33           480 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              20              493 
  ARID1A MUTATED ARID1A WILD-TYPE 
              20              493 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            24            489 
  PTEN MUTATED PTEN WILD-TYPE 
            24            489 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            35            478 
  EGFR MUTATED EGFR WILD-TYPE 
            35            478 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              505 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               8              505 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              502 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              502 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              44              469 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              44              469 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
             10             503 
  STK19 MUTATED STK19 WILD-TYPE 
             10             503 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             6            507 
  EMG1 MUTATED EMG1 WILD-TYPE 
             6            507 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               26               487 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               26               487 
[1] "NIPBL MUTATION ANALYSIS"
[1] 3
  NIPBL MUTATED NIPBL WILD-TYPE 
             18             495 
  NIPBL MUTATED NIPBL WILD-TYPE 
             18             495 
[1] "TCF12 MUTATION ANALYSIS"
[1] 3
  TCF12 MUTATED TCF12 WILD-TYPE 
             15             498 
  TCF12 MUTATED TCF12 WILD-TYPE 
             15             498 
[1] "DNMT3A MUTATION ANALYSIS"
[1] 3
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              503 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              503 
[1] "TRERF1 MUTATION ANALYSIS"
[1] 3
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               6              507 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               6              507 
[1] "CREBZF MUTATION ANALYSIS"
[1] 3
  CREBZF MUTATED CREBZF WILD-TYPE 
               7              506 
  CREBZF MUTATED CREBZF WILD-TYPE 
               7              506 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              18              495 
  FAM47C MUTATED FAM47C WILD-TYPE 
              18              495 
[1] "MYST4 MUTATION ANALYSIS"
[1] 3
  MYST4 MUTATED MYST4 WILD-TYPE 
             11             502 
  MYST4 MUTATED MYST4 WILD-TYPE 
             11             502 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
             3            510 
  MED9 MUTATED MED9 WILD-TYPE 
             3            510 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
             7            506 
  IRS4 MUTATED IRS4 WILD-TYPE 
             7            506 
[1] "HTRA2 MUTATION ANALYSIS"
[1] 3
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             508 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             508 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             4            509 
  NRAS MUTATED NRAS WILD-TYPE 
             4            509 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               9              504 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               9              504 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               4              509 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               4              509 
[1] "PLXNA3 MUTATION ANALYSIS"
[1] 3
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               9              504 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               9              504 
[1] "ROBO3 MUTATION ANALYSIS"
[1] 3
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             508 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             508 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            6           507 
  RB1 MUTATED RB1 WILD-TYPE 
            6           507 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             4            509 
  SRPX MUTATED SRPX WILD-TYPE 
             4            509 
[1] "PDGFRA MUTATION ANALYSIS"
[1] 3
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              10              503 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              10              503 
[1] "ZNF512B MUTATION ANALYSIS"
[1] 3
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               508 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               508 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              9             504 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              9             504 
[1] "TMEM216 MUTATION ANALYSIS"
[1] 3
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               510 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               510 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             11             502 
  ARID2 MUTATED ARID2 WILD-TYPE 
             11             502 
[1] "RBPJ MUTATION ANALYSIS"
[1] 3
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            506 
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            506 
[1] "CUL4B MUTATION ANALYSIS"
[1] 3
  CUL4B MUTATED CUL4B WILD-TYPE 
             10             503 
  CUL4B MUTATED CUL4B WILD-TYPE 
             10             503 
[1] "SLC6A3 MUTATION ANALYSIS"
[1] 3
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               9              504 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               9              504 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             10             503 
  SETD2 MUTATED SETD2 WILD-TYPE 
             10             503 
[1] "KRT3 MUTATION ANALYSIS"
[1] 3
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            509 
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            509 
[1] "MYT1 MUTATION ANALYSIS"
[1] 3
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            507 
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            507 
[1] "SMOC1 MUTATION ANALYSIS"
[1] 3
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              3             510 
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              3             510 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              492 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              492 
[1] "PPL MUTATION ANALYSIS"
[1] 3
  PPL MUTATED PPL WILD-TYPE 
            6           507 
  PPL MUTATED PPL WILD-TYPE 
            6           507 
[1] "PTPN11 MUTATION ANALYSIS"
[1] 3
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               7              506 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               7              506 
[1] "RET MUTATION ANALYSIS"
[1] 3
  RET MUTATED RET WILD-TYPE 
            7           506 
  RET MUTATED RET WILD-TYPE 
            7           506 
[1] "ANKRD36 MUTATION ANALYSIS"
[1] 3
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               506 
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                7               506 
[1] "NEU2 MUTATION ANALYSIS"
[1] 3
  NEU2 MUTATED NEU2 WILD-TYPE 
             5            508 
  NEU2 MUTATED NEU2 WILD-TYPE 
             5            508 
[1] "PRX MUTATION ANALYSIS"
[1] 3
  PRX MUTATED PRX WILD-TYPE 
           10           503 
  PRX MUTATED PRX WILD-TYPE 
           10           503 
[1] "RBBP6 MUTATION ANALYSIS"
[1] 3
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              6             507 
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              6             507 
[1] "CIB1 MUTATION ANALYSIS"
[1] 3
  CIB1 MUTATED CIB1 WILD-TYPE 
             4            509 
  CIB1 MUTATED CIB1 WILD-TYPE 
             4            509 
[1] "DDX5 MUTATION ANALYSIS"
[1] 3
  DDX5 MUTATED DDX5 WILD-TYPE 
             5            508 
  DDX5 MUTATED DDX5 WILD-TYPE 
             5            508 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4              509 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4              509 
[1] "SCN4A MUTATION ANALYSIS"
[1] 3
  SCN4A MUTATED SCN4A WILD-TYPE 
              6             507 
  SCN4A MUTATED SCN4A WILD-TYPE 
              6             507 
[1] "AGBL1 MUTATION ANALYSIS"
[1] 3
  AGBL1 MUTATED AGBL1 WILD-TYPE 
              5             508 
  AGBL1 MUTATED AGBL1 WILD-TYPE 
              5             508 
[1] "TPX2 MUTATION ANALYSIS"
[1] 3
  TPX2 MUTATED TPX2 WILD-TYPE 
             5            508 
  TPX2 MUTATED TPX2 WILD-TYPE 
             5            508 
[1] "KRT15 MUTATION ANALYSIS"
[1] 3
  KRT15 MUTATED KRT15 WILD-TYPE 
              6             507 
  KRT15 MUTATED KRT15 WILD-TYPE 
              6             507 
[1] "HTR3A MUTATION ANALYSIS"
[1] 3
  HTR3A MUTATED HTR3A WILD-TYPE 
              7             506 
  HTR3A MUTATED HTR3A WILD-TYPE 
              7             506 
[1] "C14ORF4 MUTATION ANALYSIS"
[1] 3
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                3               510 
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                3               510 
[1] "R3HDM1 MUTATION ANALYSIS"
[1] 3
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               7              506 
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               7              506 
[1] "G6PC MUTATION ANALYSIS"
[1] 3
  G6PC MUTATED G6PC WILD-TYPE 
             6            507 
  G6PC MUTATED G6PC WILD-TYPE 
             6            507 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
             6            507 
  DLC1 MUTATED DLC1 WILD-TYPE 
             6            507 
[1] "SLC12A7 MUTATION ANALYSIS"
[1] 3
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                7               506 
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                7               506 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                4               509 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                4               509 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
            5           508 
  WRN MUTATED WRN WILD-TYPE 
            5           508 
[1] "LAMA4 MUTATION ANALYSIS"
[1] 3
  LAMA4 MUTATED LAMA4 WILD-TYPE 
              4             509 
  LAMA4 MUTATED LAMA4 WILD-TYPE 
              4             509 
[1] "MAST2 MUTATION ANALYSIS"
[1] 3
  MAST2 MUTATED MAST2 WILD-TYPE 
              5             508 
  MAST2 MUTATED MAST2 WILD-TYPE 
              5             508 
[1] "ZMYM2 MUTATION ANALYSIS"
[1] 3
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             506 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             506 
[1] "SLFN11 MUTATION ANALYSIS"
[1] 3
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               4              509 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               4              509 
[1] "C4BPA MUTATION ANALYSIS"
[1] 3
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             507 
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             507 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                510 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                510 
[1] "KTELC1 MUTATION ANALYSIS"
[1] 3
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              508 
  KTELC1 MUTATED KTELC1 WILD-TYPE 
               5              508 
[1] "ASXL2 MUTATION ANALYSIS"
[1] 3
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              3             510 
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              3             510 
[1] "CCDC135 MUTATION ANALYSIS"
[1] 3
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                7               506 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                7               506 
[1] "SLC25A5 MUTATION ANALYSIS"
[1] 3
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                4               509 
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                4               509 
[1] "ABCA7 MUTATION ANALYSIS"
[1] 3
  ABCA7 MUTATED ABCA7 WILD-TYPE 
              9             504 
  ABCA7 MUTATED ABCA7 WILD-TYPE 
              9             504 
[1] "NKD2 MUTATION ANALYSIS"
[1] 3
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            509 
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            509 
[1] "MAX MUTATION ANALYSIS"
[1] 3
  MAX MUTATED MAX WILD-TYPE 
            4           509 
  MAX MUTATED MAX WILD-TYPE 
            4           509 
[1] "VSIG4 MUTATION ANALYSIS"
[1] 3
  VSIG4 MUTATED VSIG4 WILD-TYPE 
              6             507 
  VSIG4 MUTATED VSIG4 WILD-TYPE 
              6             507 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 513 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 513 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        9      7      7
  IDH1 WILD-TYPE      0      3      1
D1V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            9              0
  CLUS_2            7              3
  CLUS_3            7              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        6      6      5      6
  IDH1 WILD-TYPE      1      1      2      0
D1V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            6              1
  CLUS_2            6              1
  CLUS_3            5              2
  CLUS_4            6              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      158     45    193
  IDH1 WILD-TYPE     11     75     28
D1V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          158             11
  CLUS_2           45             75
  CLUS_3          193             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED      218      6    155     19
  IDH1 WILD-TYPE      4     75     13     23
D1V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          218              4
  CLUS_2            6             75
  CLUS_3          155             13
  CLUS_4           19             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       75     63    109     87
  IDH1 WILD-TYPE     16     32     16     28
D1V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           75             16
  CLUS_2           63             32
  CLUS_3          109             16
  CLUS_4           87             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED       75    127    132
  IDH1 WILD-TYPE      7     32     53
D1V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           75              7
  CLUS_2          127             32
  CLUS_3          132             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH1 MUTATED      130     34    101    109     24
  IDH1 WILD-TYPE      2     75      8     24      6
D1V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          130              2
  CLUS_2           34             75
  CLUS_3          101              8
  CLUS_4          109             24
  CLUS_5           24              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH1 MUTATED      132      2     32     50     84     37     61
  IDH1 WILD-TYPE      2     69      4     16      7      4     13
D1V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          132              2
  CLUS_2            2             69
  CLUS_3           32              4
  CLUS_4           50             16
  CLUS_5           84              7
  CLUS_6           37              4
  CLUS_7           61             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       97     73    146     78
  IDH1 WILD-TYPE     39     34     37      5
D1V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           97             39
  CLUS_2           73             34
  CLUS_3          146             37
  CLUS_4           78              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      207    152     35
  IDH1 WILD-TYPE     15     32     68
D1V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          207             15
  CLUS_2          152             32
  CLUS_3           35             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      114    153    124
  IDH1 WILD-TYPE     70      9     35
D1V11, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          114             70
  CLUS_2          153              9
  CLUS_3          124             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       84    129    161     17
  IDH1 WILD-TYPE      6      9     27     72
D1V12, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           84              6
  CLUS_2          129              9
  CLUS_3          161             27
  CLUS_4           17             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        8      4      4
  TP53 WILD-TYPE      1      6      4
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            8              1
  CLUS_2            4              6
  CLUS_3            4              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        5      7      1      3
  TP53 WILD-TYPE      2      0      6      3
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5              2
  CLUS_2            7              0
  CLUS_3            1              6
  CLUS_4            3              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      156     47     45
  TP53 WILD-TYPE     13     73    176
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          156             13
  CLUS_2           47             73
  CLUS_3           45            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      213     15      7     13
  TP53 WILD-TYPE      9     66    161     29
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          213              9
  CLUS_2           15             66
  CLUS_3            7            161
  CLUS_4           13             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       49     45     68     38
  TP53 WILD-TYPE     42     50     57     77
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           49             42
  CLUS_2           45             50
  CLUS_3           68             57
  CLUS_4           38             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       48     59     93
  TP53 WILD-TYPE     34    100     92
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           48             34
  CLUS_2           59            100
  CLUS_3           93             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED      129     40      7     58     14
  TP53 WILD-TYPE      3     69    102     75     16
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          129              3
  CLUS_2           40             69
  CLUS_3            7            102
  CLUS_4           58             75
  CLUS_5           14             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED      129      8      1     48      4     38     20
  TP53 WILD-TYPE      5     63     35     18     87      3     54
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          129              5
  CLUS_2            8             63
  CLUS_3            1             35
  CLUS_4           48             18
  CLUS_5            4             87
  CLUS_6           38              3
  CLUS_7           20             54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       82     70     74     18
  TP53 WILD-TYPE     54     37    109     65
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           82             54
  CLUS_2           70             37
  CLUS_3           74            109
  CLUS_4           18             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      133     71     40
  TP53 WILD-TYPE     89    113     63
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          133             89
  CLUS_2           71            113
  CLUS_3           40             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       98     79     64
  TP53 WILD-TYPE     86     83     95
D2V11, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           98             86
  CLUS_2           79             83
  CLUS_3           64             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       79     56     85     21
  TP53 WILD-TYPE     11     82    103     68
D2V12, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           79             11
  CLUS_2           56             82
  CLUS_3           85            103
  CLUS_4           21             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = ATRX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        8      3      3
  ATRX WILD-TYPE      1      7      5
D3V1, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            8              1
  CLUS_2            3              7
  CLUS_3            3              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        5      5      1      3
  ATRX WILD-TYPE      2      2      6      3
D3V2, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            5              2
  CLUS_2            5              2
  CLUS_3            1              6
  CLUS_4            3              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED      129     34     32
  ATRX WILD-TYPE     40     86    189
D3V3, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          129             40
  CLUS_2           34             86
  CLUS_3           32            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED      171      8      3     13
  ATRX WILD-TYPE     51     73    165     29
D3V4, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          171             51
  CLUS_2            8             73
  CLUS_3            3            165
  CLUS_4           13             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       43     34     53     36
  ATRX WILD-TYPE     48     61     72     79
D3V5, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           43             48
  CLUS_2           34             61
  CLUS_3           53             72
  CLUS_4           36             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       42     55     69
  ATRX WILD-TYPE     40    104    116
D3V6, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           42             40
  CLUS_2           55            104
  CLUS_3           69            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED      107     27      2     48     11
  ATRX WILD-TYPE     25     82    107     85     19
D3V7, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          107             25
  CLUS_2           27             82
  CLUS_3            2            107
  CLUS_4           48             85
  CLUS_5           11             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATRX MUTATED      108      4      1     38      1     26     17
  ATRX WILD-TYPE     26     67     35     28     90     15     57
D3V8, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          108             26
  CLUS_2            4             67
  CLUS_3            1             35
  CLUS_4           38             28
  CLUS_5            1             90
  CLUS_6           26             15
  CLUS_7           17             57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       60     60     59     12
  ATRX WILD-TYPE     76     47    124     71
D3V9, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           60             76
  CLUS_2           60             47
  CLUS_3           59            124
  CLUS_4           12             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED      108     58     25
  ATRX WILD-TYPE    114    126     78
D3V10, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          108            114
  CLUS_2           58            126
  CLUS_3           25             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       76     60     52
  ATRX WILD-TYPE    108    102    107
D3V11, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           76            108
  CLUS_2           60            102
  CLUS_3           52            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       62     43     69     14
  ATRX WILD-TYPE     28     95    119     75
D3V12, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           62             28
  CLUS_2           43             95
  CLUS_3           69            119
  CLUS_4           14             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        0      5      2
  CIC WILD-TYPE      9      5      6
D4V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0             9
  CLUS_2           5             5
  CLUS_3           2             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        0      0      5      2
  CIC WILD-TYPE      7      7      2      4
D4V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             7
  CLUS_3           5             2
  CLUS_4           2             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        1      5    102
  CIC WILD-TYPE    168    115    119
D4V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1           168
  CLUS_2           5           115
  CLUS_3         102           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        0      1    104      3
  CIC WILD-TYPE    222     80     64     39
D4V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           222
  CLUS_2           1            80
  CLUS_3         104            64
  CLUS_4           3            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       13     17     35     30
  CIC WILD-TYPE     78     78     90     85
D4V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          13            78
  CLUS_2          17            78
  CLUS_3          35            90
  CLUS_4          30            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       15     41     39
  CIC WILD-TYPE     67    118    146
D4V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          15            67
  CLUS_2          41           118
  CLUS_3          39           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        0      1     74     28      5
  CIC WILD-TYPE    132    108     35    105     25
D4V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           132
  CLUS_2           1           108
  CLUS_3          74            35
  CLUS_4          28           105
  CLUS_5           5            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIC MUTATED        0      0     23      0     60      1     24
  CIC WILD-TYPE    134     71     13     66     31     40     50
D4V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           134
  CLUS_2           0            71
  CLUS_3          23            13
  CLUS_4           0            66
  CLUS_5          60            31
  CLUS_6           1            40
  CLUS_7          24            50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       15      4     43     46
  CIC WILD-TYPE    121    103    140     37
D4V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          15           121
  CLUS_2           4           103
  CLUS_3          43           140
  CLUS_4          46            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       55     51      2
  CIC WILD-TYPE    167    133    101
D4V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          55           167
  CLUS_2          51           133
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       11     61     36
  CIC WILD-TYPE    173    101    123
D4V11, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          11           173
  CLUS_2          61           101
  CLUS_3          36           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        2     62     43      1
  CIC WILD-TYPE     88     76    145     88
D4V12, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2            88
  CLUS_2          62            76
  CLUS_3          43           145
  CLUS_4           1            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        0      2      1
  NOTCH1 WILD-TYPE      9      8      7
D5V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2                8
  CLUS_3              1                7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        0      0      2      1
  NOTCH1 WILD-TYPE      7      7      5      5
D5V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                7
  CLUS_3              2                5
  CLUS_4              1                5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        6      5     31
  NOTCH1 WILD-TYPE    163    115    190
D5V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6              163
  CLUS_2              5              115
  CLUS_3             31              190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        9      1     32      0
  NOTCH1 WILD-TYPE    213     80    136     42
D5V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              9              213
  CLUS_2              1               80
  CLUS_3             32              136
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        6      8     15     10
  NOTCH1 WILD-TYPE     85     87    110    105
D5V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6               85
  CLUS_2              8               87
  CLUS_3             15              110
  CLUS_4             10              105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        5     16     18
  NOTCH1 WILD-TYPE     77    143    167
D5V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              5               77
  CLUS_2             16              143
  CLUS_3             18              167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED        3      3     21     15      0
  NOTCH1 WILD-TYPE    129    106     88    118     30
D5V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3              129
  CLUS_2              3              106
  CLUS_3             21               88
  CLUS_4             15              118
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED        3      0     13      1      9      3     13
  NOTCH1 WILD-TYPE    131     71     23     65     82     38     61
D5V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              0               71
  CLUS_3             13               23
  CLUS_4              1               65
  CLUS_5              9               82
  CLUS_6              3               38
  CLUS_7             13               61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        4      3     21     13
  NOTCH1 WILD-TYPE    132    104    162     70
D5V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4              132
  CLUS_2              3              104
  CLUS_3             21              162
  CLUS_4             13               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       16     23      2
  NOTCH1 WILD-TYPE    206    161    101
D5V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             16              206
  CLUS_2             23              161
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        6     13     22
  NOTCH1 WILD-TYPE    178    149    137
D5V11, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6              178
  CLUS_2             13              149
  CLUS_3             22              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        3     14     24      0
  NOTCH1 WILD-TYPE     87    124    164     89
D5V12, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3               87
  CLUS_2             14              124
  CLUS_3             24              164
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = IDH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        0      2      0
  IDH2 WILD-TYPE      9      8      8
D6V1, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5322 
"IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      0      2      0
  IDH2 WILD-TYPE      7      7      5      6
D6V2, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5322 
"IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        1      3     16
  IDH2 WILD-TYPE    168    117    205
D6V3, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            3            117
  CLUS_3           16            205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      0     13      4
  IDH2 WILD-TYPE    219     81    155     38
D6V4, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            0             81
  CLUS_3           13            155
  CLUS_4            4             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      5      4      7
  IDH2 WILD-TYPE     90     90    121    108
D6V5, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            5             90
  CLUS_3            4            121
  CLUS_4            7            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        0      8      9
  IDH2 WILD-TYPE     82    151    176
D6V6, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             82
  CLUS_2            8            151
  CLUS_3            9            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        1      1      8      9      1
  IDH2 WILD-TYPE    131    108    101    124     29
D6V7, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            1            108
  CLUS_3            8            101
  CLUS_4            9            124
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH2 MUTATED        1      0      4      1      6      0      8
  IDH2 WILD-TYPE    133     71     32     65     85     41     66
D6V8, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            0             71
  CLUS_3            4             32
  CLUS_4            1             65
  CLUS_5            6             85
  CLUS_6            0             41
  CLUS_7            8             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      0     12      5
  IDH2 WILD-TYPE    133    107    171     78
D6V9, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            133
  CLUS_2            0            107
  CLUS_3           12            171
  CLUS_4            5             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        5     15      0
  IDH2 WILD-TYPE    217    169    103
D6V10, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            5            217
  CLUS_2           15            169
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        1      8     11
  IDH2 WILD-TYPE    183    154    148
D6V11, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            8            154
  CLUS_3           11            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        2      6     12      0
  IDH2 WILD-TYPE     88    132    176     89
D6V12, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            6            132
  CLUS_3           12            176
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        2      1      0
  PIK3R1 WILD-TYPE      7      9      8
D7V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2                7
  CLUS_2              1                9
  CLUS_3              0                8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        2      0      1      0
  PIK3R1 WILD-TYPE      5      7      6      6
D7V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0                7
  CLUS_3              1                6
  CLUS_4              0                6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        2      5     15
  PIK3R1 WILD-TYPE    167    115    206
D7V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              5              115
  CLUS_3             15              206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        3      5     14      0
  PIK3R1 WILD-TYPE    219     76    154     42
D7V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              5               76
  CLUS_3             14              154
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        5      4      5      6
  PIK3R1 WILD-TYPE     86     91    120    109
D7V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               86
  CLUS_2              4               91
  CLUS_3              5              120
  CLUS_4              6              109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        3      9      8
  PIK3R1 WILD-TYPE     79    150    177
D7V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               79
  CLUS_2              9              150
  CLUS_3              8              177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        2      6      8      4      2
  PIK3R1 WILD-TYPE    130    103    101    129     28
D7V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              6              103
  CLUS_3              8              101
  CLUS_4              4              129
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3R1 MUTATED        3      2      1      0      9      3      4
  PIK3R1 WILD-TYPE    131     69     35     66     82     38     70
D7V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              2               69
  CLUS_3              1               35
  CLUS_4              0               66
  CLUS_5              9               82
  CLUS_6              3               38
  CLUS_7              4               70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        6      3      5      8
  PIK3R1 WILD-TYPE    130    104    178     75
D7V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              6              130
  CLUS_2              3              104
  CLUS_3              5              178
  CLUS_4              8               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED       12      7      3
  PIK3R1 WILD-TYPE    210    177    100
D7V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             12              210
  CLUS_2              7              177
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        9      7      6
  PIK3R1 WILD-TYPE    175    155    153
D7V11, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              9              175
  CLUS_2              7              155
  CLUS_3              6              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        3      8      9      2
  PIK3R1 WILD-TYPE     87    130    179     87
D7V12, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               87
  CLUS_2              8              130
  CLUS_3              9              179
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = FUBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        0      4      0
  FUBP1 WILD-TYPE      9      6      8
D8V1, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             4               6
  CLUS_3             0               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0      0      4      0
  FUBP1 WILD-TYPE      7      7      3      6
D8V2, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               7
  CLUS_3             4               3
  CLUS_4             0               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        0      1     46
  FUBP1 WILD-TYPE    169    119    175
D8V3, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3            46             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0      1     46      0
  FUBP1 WILD-TYPE    222     80    122     42
D8V4, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1              80
  CLUS_3            46             122
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        7      7     13     14
  FUBP1 WILD-TYPE     84     88    112    101
D8V5, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             7              84
  CLUS_2             7              88
  CLUS_3            13             112
  CLUS_4            14             101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        7     18     16
  FUBP1 WILD-TYPE     75    141    169
D8V6, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             7              75
  CLUS_2            18             141
  CLUS_3            16             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUBP1 MUTATED        0      1     32     11      3
  FUBP1 WILD-TYPE    132    108     77    122     27
D8V7, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3            32              77
  CLUS_4            11             122
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FUBP1 MUTATED        0      0     12      0     22      1     12
  FUBP1 WILD-TYPE    134     71     24     66     69     40     62
D8V8, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3            12              24
  CLUS_4             0              66
  CLUS_5            22              69
  CLUS_6             1              40
  CLUS_7            12              62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        6      1     22     18
  FUBP1 WILD-TYPE    130    106    161     65
D8V9, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             6             130
  CLUS_2             1             106
  CLUS_3            22             161
  CLUS_4            18              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED       24     22      1
  FUBP1 WILD-TYPE    198    162    102
D8V10, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1            24             198
  CLUS_2            22             162
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        8     22     17
  FUBP1 WILD-TYPE    176    140    142
D8V11, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             8             176
  CLUS_2            22             140
  CLUS_3            17             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0     23     24      0
  FUBP1 WILD-TYPE     90    115    164     89
D8V12, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2            23             115
  CLUS_3            24             164
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        0      1      0
  NF1 WILD-TYPE      9      9      8
D9V1, multiclass
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5322 
"NF1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        0      1      0      0
  NF1 WILD-TYPE      7      6      7      6
D9V2, multiclass
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5322 
"NF1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        6     17     10
  NF1 WILD-TYPE    163    103    211
D9V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           6           163
  CLUS_2          17           103
  CLUS_3          10           211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1     19      8      5
  NF1 WILD-TYPE    221     62    160     37
D9V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           221
  CLUS_2          19            62
  CLUS_3           8           160
  CLUS_4           5            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1     10      6      8
  NF1 WILD-TYPE     90     85    119    107
D9V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            90
  CLUS_2          10            85
  CLUS_3           6           119
  CLUS_4           8           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        2      8     15
  NF1 WILD-TYPE     80    151    170
D9V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            80
  CLUS_2           8           151
  CLUS_3          15           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        1     20      6      4      2
  NF1 WILD-TYPE    131     89    103    129     28
D9V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           131
  CLUS_2          20            89
  CLUS_3           6           103
  CLUS_4           4           129
  CLUS_5           2            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF1 MUTATED        1     16      1      3      6      4      2
  NF1 WILD-TYPE    133     55     35     63     85     37     72
D9V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           133
  CLUS_2          16            55
  CLUS_3           1            35
  CLUS_4           3            63
  CLUS_5           6            85
  CLUS_6           4            37
  CLUS_7           2            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        9     11      9      4
  NF1 WILD-TYPE    127     96    174     79
D9V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           9           127
  CLUS_2          11            96
  CLUS_3           9           174
  CLUS_4           4            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       10      6     17
  NF1 WILD-TYPE    212    178     86
D9V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10           212
  CLUS_2           6           178
  CLUS_3          17            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       21      6      6
  NF1 WILD-TYPE    163    156    153
D9V11, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          21           163
  CLUS_2           6           156
  CLUS_3           6           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1      6      7     19
  NF1 WILD-TYPE     89    132    181     70
D9V12, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            89
  CLUS_2           6           132
  CLUS_3           7           181
  CLUS_4          19            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        0      1      0
  ARID1A WILD-TYPE      9      9      8
D10V1, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5276       TCGA-DB-5277 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      1      0      0
  ARID1A WILD-TYPE      7      6      7      6
D10V2, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5276       TCGA-DB-5277 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        6      3     10
  ARID1A WILD-TYPE    163    117    211
D10V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              163
  CLUS_2              3              117
  CLUS_3             10              211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        6      2     12      0
  ARID1A WILD-TYPE    216     79    156     42
D10V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              216
  CLUS_2              2               79
  CLUS_3             12              156
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        4      1      8      5
  ARID1A WILD-TYPE     87     94    117    110
D10V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               87
  CLUS_2              1               94
  CLUS_3              8              117
  CLUS_4              5              110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        5      6      7
  ARID1A WILD-TYPE     77    153    178
D10V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5               77
  CLUS_2              6              153
  CLUS_3              7              178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        4      1     10      5      0
  ARID1A WILD-TYPE    128    108     99    128     30
D10V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              128
  CLUS_2              1              108
  CLUS_3             10               99
  CLUS_4              5              128
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        4      0      3      2      7      1      3
  ARID1A WILD-TYPE    130     71     33     64     84     40     71
D10V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              130
  CLUS_2              0               71
  CLUS_3              3               33
  CLUS_4              2               64
  CLUS_5              7               84
  CLUS_6              1               40
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        5      2      7      6
  ARID1A WILD-TYPE    131    105    176     77
D10V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5              131
  CLUS_2              2              105
  CLUS_3              7              176
  CLUS_4              6               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       10      8      2
  ARID1A WILD-TYPE    212    176    101
D10V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             10              212
  CLUS_2              8              176
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        3     10      7
  ARID1A WILD-TYPE    181    152    152
D10V11, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3              181
  CLUS_2             10              152
  CLUS_3              7              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        1     11      7      1
  ARID1A WILD-TYPE     89    127    181     88
D10V12, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              1               89
  CLUS_2             11              127
  CLUS_3              7              181
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      1
  PTEN WILD-TYPE      9     10      7
D11V1, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      0      0      0
  PTEN WILD-TYPE      6      7      7      6
D11V2, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        3     20      1
  PTEN WILD-TYPE    166    100    220
D11V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            166
  CLUS_2           20            100
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3     18      1      2
  PTEN WILD-TYPE    219     63    167     40
D11V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            219
  CLUS_2           18             63
  CLUS_3            1            167
  CLUS_4            2             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      9      2      2
  PTEN WILD-TYPE     89     86    123    113
D11V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             89
  CLUS_2            9             86
  CLUS_3            2            123
  CLUS_4            2            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      2     13
  PTEN WILD-TYPE     82    157    172
D11V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             82
  CLUS_2            2            157
  CLUS_3           13            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        3     19      1      0      1
  PTEN WILD-TYPE    129     90    108    133     29
D11V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            129
  CLUS_2           19             90
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        2     18      0      1      1      2      0
  PTEN WILD-TYPE    132     53     36     65     90     39     74
D11V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            132
  CLUS_2           18             53
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       12      8      3      1
  PTEN WILD-TYPE    124     99    180     82
D11V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12            124
  CLUS_2            8             99
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      1     17
  PTEN WILD-TYPE    216    183     86
D11V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            216
  CLUS_2            1            183
  CLUS_3           17             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       20      2      2
  PTEN WILD-TYPE    164    160    157
D11V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           20            164
  CLUS_2            2            160
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3      3      1     17
  PTEN WILD-TYPE     87    135    187     72
D11V12, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             87
  CLUS_2            3            135
  CLUS_3            1            187
  CLUS_4           17             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = EGFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      0      0
  EGFR WILD-TYPE      9     10      8
D12V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      0      0
  EGFR WILD-TYPE      7      7      7      6
D12V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0     32      3
  EGFR WILD-TYPE    169     88    218
D12V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            169
  CLUS_2           32             88
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0     30      2      3
  EGFR WILD-TYPE    222     51    166     39
D12V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            222
  CLUS_2           30             51
  CLUS_3            2            166
  CLUS_4            3             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        4      9      5      9
  EGFR WILD-TYPE     87     86    120    106
D12V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            4             87
  CLUS_2            9             86
  CLUS_3            5            120
  CLUS_4            9            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        1     10     16
  EGFR WILD-TYPE     81    149    169
D12V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            1             81
  CLUS_2           10            149
  CLUS_3           16            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGFR MUTATED        0     26      2      5      2
  EGFR WILD-TYPE    132     83    107    128     28
D12V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            132
  CLUS_2           26             83
  CLUS_3            2            107
  CLUS_4            5            128
  CLUS_5            2             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EGFR MUTATED        0     25      1      6      0      1      2
  EGFR WILD-TYPE    134     46     35     60     91     40     72
D12V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            134
  CLUS_2           25             46
  CLUS_3            1             35
  CLUS_4            6             60
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            2             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       11     11     13      0
  EGFR WILD-TYPE    125     96    170     83
D12V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           11            125
  CLUS_2           11             96
  CLUS_3           13            170
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        1      9     25
  EGFR WILD-TYPE    221    175     78
D12V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            1            221
  CLUS_2            9            175
  CLUS_3           25             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       23      0     12
  EGFR WILD-TYPE    161    162    147
D12V11, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           23            161
  CLUS_2            0            162
  CLUS_3           12            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      8     27
  EGFR WILD-TYPE     90    138    180     62
D12V12, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            8            180
  CLUS_4           27             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      0      0
  GAGE2A WILD-TYPE      8     10      8
D13V1, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5144       TCGA-E1-5302       TCGA-E1-5304       TCGA-E1-5311 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      0      0      0
  GAGE2A WILD-TYPE      6      7      7      6
D13V2, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DH-5144       TCGA-E1-5302       TCGA-E1-5304       TCGA-E1-5311 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        3      1      4
  GAGE2A WILD-TYPE    166    119    217
D13V3, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              166
  CLUS_2              1              119
  CLUS_3              4              217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        4      1      3      0
  GAGE2A WILD-TYPE    218     80    165     42
D13V4, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              4              218
  CLUS_2              1               80
  CLUS_3              3              165
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      2      3      2
  GAGE2A WILD-TYPE     90     93    122    113
D13V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               90
  CLUS_2              2               93
  CLUS_3              3              122
  CLUS_4              2              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      3      4
  GAGE2A WILD-TYPE     81    156    181
D13V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               81
  CLUS_2              3              156
  CLUS_3              4              181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        1      2      2      2      1
  GAGE2A WILD-TYPE    131    107    107    131     29
D13V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              131
  CLUS_2              2              107
  CLUS_3              2              107
  CLUS_4              2              131
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2A MUTATED        2      1      0      0      1      1      3
  GAGE2A WILD-TYPE    132     70     36     66     90     40     71
D13V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2              132
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      3      3      1
  GAGE2A WILD-TYPE    135    104    180     82
D13V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              135
  CLUS_2              3              104
  CLUS_3              3              180
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        3      3      2
  GAGE2A WILD-TYPE    219    181    101
D13V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              219
  CLUS_2              3              181
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        2      3      3
  GAGE2A WILD-TYPE    182    159    156
D13V11, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2              182
  CLUS_2              3              159
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        2      2      3      1
  GAGE2A WILD-TYPE     88    136    185     88
D13V12, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2               88
  CLUS_2              2              136
  CLUS_3              3              185
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        0      0      0
  NUDT11 WILD-TYPE      9     10      8
D14V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      0      0      0
  NUDT11 WILD-TYPE      7      7      7      6
D14V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        4      2      5
  NUDT11 WILD-TYPE    165    118    216
D14V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              165
  CLUS_2              2              118
  CLUS_3              5              216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        6      1      4      0
  NUDT11 WILD-TYPE    216     80    164     42
D14V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              6              216
  CLUS_2              1               80
  CLUS_3              4              164
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        2      4      4      1
  NUDT11 WILD-TYPE     89     91    121    114
D14V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               89
  CLUS_2              4               91
  CLUS_3              4              121
  CLUS_4              1              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      3      6
  NUDT11 WILD-TYPE     80    156    179
D14V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2               80
  CLUS_2              3              156
  CLUS_3              6              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      2      4      1      2
  NUDT11 WILD-TYPE    130    107    105    132     28
D14V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              2              107
  CLUS_3              4              105
  CLUS_4              1              132
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        3      0      1      0      3      3      1
  NUDT11 WILD-TYPE    131     71     35     66     88     38     73
D14V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              0               71
  CLUS_3              1               35
  CLUS_4              0               66
  CLUS_5              3               88
  CLUS_6              3               38
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      4      1      4
  NUDT11 WILD-TYPE    135    103    182     79
D14V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              4              103
  CLUS_3              1              182
  CLUS_4              4               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        5      3      2
  NUDT11 WILD-TYPE    217    181    101
D14V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              5              217
  CLUS_2              3              181
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        1      5      4
  NUDT11 WILD-TYPE    183    157    155
D14V11, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              183
  CLUS_2              5              157
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      5      4      0
  NUDT11 WILD-TYPE     89    133    184     89
D14V12, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              5              133
  CLUS_3              4              184
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        0      0      0
  PIK3CA WILD-TYPE      9     10      8
D15V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      0      0      0
  PIK3CA WILD-TYPE      7      7      7      6
D15V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        3     13     28
  PIK3CA WILD-TYPE    166    107    193
D15V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3              166
  CLUS_2             13              107
  CLUS_3             28              193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        5     11     25      3
  PIK3CA WILD-TYPE    217     70    143     39
D15V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5              217
  CLUS_2             11               70
  CLUS_3             25              143
  CLUS_4              3               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        9     10      6     11
  PIK3CA WILD-TYPE     82     85    119    104
D15V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               82
  CLUS_2             10               85
  CLUS_3              6              119
  CLUS_4             11              104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        7     16     13
  PIK3CA WILD-TYPE     75    143    172
D15V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               75
  CLUS_2             16              143
  CLUS_3             13              172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        2     14     15     10      3
  PIK3CA WILD-TYPE    130     95     94    123     27
D15V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2              130
  CLUS_2             14               95
  CLUS_3             15               94
  CLUS_4             10              123
  CLUS_5              3               27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        1     11      2      2     15      4      9
  PIK3CA WILD-TYPE    133     60     34     64     76     37     65
D15V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              133
  CLUS_2             11               60
  CLUS_3              2               34
  CLUS_4              2               64
  CLUS_5             15               76
  CLUS_6              4               37
  CLUS_7              9               65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        5     14     13     12
  PIK3CA WILD-TYPE    131     93    170     71
D15V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5              131
  CLUS_2             14               93
  CLUS_3             13              170
  CLUS_4             12               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       13     16     15
  PIK3CA WILD-TYPE    209    168     88
D15V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13              209
  CLUS_2             16              168
  CLUS_3             15               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       17     10     17
  PIK3CA WILD-TYPE    167    152    142
D15V11, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             17              167
  CLUS_2             10              152
  CLUS_3             17              142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0     15     17     12
  PIK3CA WILD-TYPE     90    123    171     77
D15V12, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               90
  CLUS_2             15              123
  CLUS_3             17              171
  CLUS_4             12               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = STK19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        0      0      0
  STK19 WILD-TYPE      9     10      8
D16V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        0      0      0      0
  STK19 WILD-TYPE      7      7      7      6
D16V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    166    116    218
D16V3, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             166
  CLUS_2             4             116
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        4      3      1      2
  STK19 WILD-TYPE    218     78    167     40
D16V4, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             4             218
  CLUS_2             3              78
  CLUS_3             1             167
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        3      0      2      2
  STK19 WILD-TYPE     88     95    123    113
D16V5, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3              88
  CLUS_2             0              95
  CLUS_3             2             123
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        2      3      2
  STK19 WILD-TYPE     80    156    183
D16V6, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2              80
  CLUS_2             3             156
  CLUS_3             2             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        2      3      0      4      1
  STK19 WILD-TYPE    130    106    109    129     29
D16V7, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             3             106
  CLUS_3             0             109
  CLUS_4             4             129
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK19 MUTATED        2      2      0      3      1      1      1
  STK19 WILD-TYPE    132     69     36     63     90     40     73
D16V8, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             3              63
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        1      4      5      0
  STK19 WILD-TYPE    135    103    178     83
D16V9, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             4             103
  CLUS_3             5             178
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    219    180    100
D16V10, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             4             180
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    181    158    156
D16V11, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             4             158
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        1      2      5      2
  STK19 WILD-TYPE     89    136    183     87
D16V12, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             5             183
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      0      0
  EMG1 WILD-TYPE      9     10      8
D17V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      0      0      0
  EMG1 WILD-TYPE      7      7      7      6
D17V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      3
  EMG1 WILD-TYPE    167    119    218
D17V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        3      0      3      0
  EMG1 WILD-TYPE    219     81    165     42
D17V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            0             81
  CLUS_3            3            165
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      0      2      2
  EMG1 WILD-TYPE     89     95    123    113
D17V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2             89
  CLUS_2            0             95
  CLUS_3            2            123
  CLUS_4            2            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      3
  EMG1 WILD-TYPE     80    158    182
D17V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2             80
  CLUS_2            1            158
  CLUS_3            3            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      0      2      2      1
  EMG1 WILD-TYPE    131    109    107    131     29
D17V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            0            109
  CLUS_3            2            107
  CLUS_4            2            131
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        1      0      0      2      3      0      0
  EMG1 WILD-TYPE    133     71     36     64     88     41     74
D17V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            2             64
  CLUS_5            3             88
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      3      2
  EMG1 WILD-TYPE    135    107    180     81
D17V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            0            107
  CLUS_3            3            180
  CLUS_4            2             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        4      2      0
  EMG1 WILD-TYPE    218    182    103
D17V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            4            218
  CLUS_2            2            182
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      3      2
  EMG1 WILD-TYPE    183    159    157
D17V11, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            3            159
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      3      2      0
  EMG1 WILD-TYPE     89    135    186     89
D17V12, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            3            135
  CLUS_3            2            186
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = SMARCA4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        0      0      0
  SMARCA4 WILD-TYPE      9     10      8
D18V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        0      0      0      0
  SMARCA4 WILD-TYPE      7      7      7      6
D18V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       16      4      6
  SMARCA4 WILD-TYPE    153    116    215
D18V3, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              16               153
  CLUS_2               4               116
  CLUS_3               6               215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED       17      2      7      0
  SMARCA4 WILD-TYPE    205     79    161     42
D18V4, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              17               205
  CLUS_2               2                79
  CLUS_3               7               161
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        1      4      9      5
  SMARCA4 WILD-TYPE     90     91    116    110
D18V5, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               4                91
  CLUS_3               9               116
  CLUS_4               5               110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        3      7      9
  SMARCA4 WILD-TYPE     79    152    176
D18V6, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                79
  CLUS_2               7               152
  CLUS_3               9               176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA4 MUTATED        9      2      7      6      2
  SMARCA4 WILD-TYPE    123    107    102    127     28
D18V7, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               9               123
  CLUS_2               2               107
  CLUS_3               7               102
  CLUS_4               6               127
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA4 MUTATED       11      1      2      4      4      2      2
  SMARCA4 WILD-TYPE    123     70     34     62     87     39     72
D18V8, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              11               123
  CLUS_2               1                70
  CLUS_3               2                34
  CLUS_4               4                62
  CLUS_5               4                87
  CLUS_6               2                39
  CLUS_7               2                72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        8      2      9      6
  SMARCA4 WILD-TYPE    128    105    174     77
D18V9, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               8               128
  CLUS_2               2               105
  CLUS_3               9               174
  CLUS_4               6                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       14      9      2
  SMARCA4 WILD-TYPE    208    175    101
D18V10, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              14               208
  CLUS_2               9               175
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        8      9      8
  SMARCA4 WILD-TYPE    176    153    151
D18V11, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               8               176
  CLUS_2               9               153
  CLUS_3               8               151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        7      6     11      1
  SMARCA4 WILD-TYPE     83    132    177     88
D18V12, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               7                83
  CLUS_2               6               132
  CLUS_3              11               177
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = NIPBL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        0      1      0
  NIPBL WILD-TYPE      9      9      8
D19V1, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        0      0      1      0
  NIPBL WILD-TYPE      7      7      6      6
D19V2, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        2      3     13
  NIPBL WILD-TYPE    167    117    208
D19V3, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             167
  CLUS_2             3             117
  CLUS_3            13             208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      2     14      0
  NIPBL WILD-TYPE    220     79    154     42
D19V4, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3            14             154
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        3      2      7      2
  NIPBL WILD-TYPE     88     93    118    113
D19V5, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              88
  CLUS_2             2              93
  CLUS_3             7             118
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        5      3      6
  NIPBL WILD-TYPE     77    156    179
D19V6, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5              77
  CLUS_2             3             156
  CLUS_3             6             179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPBL MUTATED        1      3     10      2      2
  NIPBL WILD-TYPE    131    106     99    131     28
D19V7, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             1             131
  CLUS_2             3             106
  CLUS_3            10              99
  CLUS_4             2             131
  CLUS_5             2              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPBL MUTATED        2      1      2      0     10      1      2
  NIPBL WILD-TYPE    132     70     34     66     81     40     72
D19V8, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             2              34
  CLUS_4             0              66
  CLUS_5            10              81
  CLUS_6             1              40
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        5      4      4      5
  NIPBL WILD-TYPE    131    103    179     78
D19V9, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5             131
  CLUS_2             4             103
  CLUS_3             4             179
  CLUS_4             5              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       12      4      2
  NIPBL WILD-TYPE    210    180    101
D19V10, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            12             210
  CLUS_2             4             180
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        3     12      3
  NIPBL WILD-TYPE    181    150    156
D19V11, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3             181
  CLUS_2            12             150
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        3     10      4      1
  NIPBL WILD-TYPE     87    128    184     88
D19V12, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              87
  CLUS_2            10             128
  CLUS_3             4             184
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = TCF12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        0      0      1
  TCF12 WILD-TYPE      9     10      7
D20V1, multiclass
[1] "Remove cluster labels:" "TCF12 MUTATED"         
clus
  TCF12 MUTATED TCF12 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        0      0      0      1
  TCF12 WILD-TYPE      7      7      7      5
D20V2, multiclass
[1] "Remove cluster labels:" "TCF12 MUTATED"         
clus
  TCF12 MUTATED TCF12 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        5      2      8
  TCF12 WILD-TYPE    164    118    213
D20V3, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             5             164
  CLUS_2             2             118
  CLUS_3             8             213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        6      1      6      2
  TCF12 WILD-TYPE    216     80    162     40
D20V4, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             6             216
  CLUS_2             1              80
  CLUS_3             6             162
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        3      2      5      2
  TCF12 WILD-TYPE     88     93    120    113
D20V5, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             3              88
  CLUS_2             2              93
  CLUS_3             5             120
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        1      4      7
  TCF12 WILD-TYPE     81    155    178
D20V6, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             1              81
  CLUS_2             4             155
  CLUS_3             7             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF12 MUTATED        4      3      5      3      0
  TCF12 WILD-TYPE    128    106    104    130     30
D20V7, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             128
  CLUS_2             3             106
  CLUS_3             5             104
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCF12 MUTATED        4      1      3      2      2      2      1
  TCF12 WILD-TYPE    130     70     33     64     89     39     73
D20V8, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             130
  CLUS_2             1              70
  CLUS_3             3              33
  CLUS_4             2              64
  CLUS_5             2              89
  CLUS_6             2              39
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        4      2      5      4
  TCF12 WILD-TYPE    132    105    178     79
D20V9, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             132
  CLUS_2             2             105
  CLUS_3             5             178
  CLUS_4             4              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        8      6      1
  TCF12 WILD-TYPE    214    178    102
D20V10, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             8             214
  CLUS_2             6             178
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        5      5      5
  TCF12 WILD-TYPE    179    157    154
D20V11, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             5             179
  CLUS_2             5             157
  CLUS_3             5             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        4      3      7      1
  TCF12 WILD-TYPE     86    135    181     88
D20V12, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4              86
  CLUS_2             3             135
  CLUS_3             7             181
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DNMT3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      0      0
  DNMT3A WILD-TYPE      9     10      8
D21V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      0      0      0
  DNMT3A WILD-TYPE      7      7      7      6
D21V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        4      3      3
  DNMT3A WILD-TYPE    165    117    218
D21V3, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              165
  CLUS_2              3              117
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        4      3      3      0
  DNMT3A WILD-TYPE    218     78    165     42
D21V4, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              218
  CLUS_2              3               78
  CLUS_3              3              165
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        2      0      3      2
  DNMT3A WILD-TYPE     89     95    122    113
D21V5, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              2               89
  CLUS_2              0               95
  CLUS_3              3              122
  CLUS_4              2              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      4      3
  DNMT3A WILD-TYPE     82    155    182
D21V6, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               82
  CLUS_2              4              155
  CLUS_3              3              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        4      2      3      1      0
  DNMT3A WILD-TYPE    128    107    106    132     30
D21V7, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              128
  CLUS_2              2              107
  CLUS_3              3              106
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNMT3A MUTATED        3      1      1      2      1      1      1
  DNMT3A WILD-TYPE    131     70     35     64     90     40     73
D21V8, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              131
  CLUS_2              1               70
  CLUS_3              1               35
  CLUS_4              2               64
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        1      2      6      1
  DNMT3A WILD-TYPE    135    105    177     82
D21V9, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              6              177
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        1      5      4
  DNMT3A WILD-TYPE    221    179     99
D21V10, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1              221
  CLUS_2              5              179
  CLUS_3              4               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        3      4      3
  DNMT3A WILD-TYPE    181    158    156
D21V11, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              181
  CLUS_2              4              158
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        1      3      4      2
  DNMT3A WILD-TYPE     89    135    184     87
D21V12, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1               89
  CLUS_2              3              135
  CLUS_3              4              184
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = TRERF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        0      0      0
  TRERF1 WILD-TYPE      9     10      8
D22V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        0      0      0      0
  TRERF1 WILD-TYPE      7      7      7      6
D22V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        4      1      1
  TRERF1 WILD-TYPE    165    119    220
D22V3, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              4              165
  CLUS_2              1              119
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        3      2      0      1
  TRERF1 WILD-TYPE    219     79    168     41
D22V4, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3              0              168
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        2      0      1      2
  TRERF1 WILD-TYPE     89     95    124    113
D22V5, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2               89
  CLUS_2              0               95
  CLUS_3              1              124
  CLUS_4              2              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      2      1
  TRERF1 WILD-TYPE     80    157    184
D22V6, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2               80
  CLUS_2              2              157
  CLUS_3              1              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRERF1 MUTATED        2      2      0      1      1
  TRERF1 WILD-TYPE    130    107    109    132     29
D22V7, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              2              107
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRERF1 MUTATED        3      1      0      1      0      1      0
  TRERF1 WILD-TYPE    131     70     36     65     91     40     74
D22V8, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      3      2      0
  TRERF1 WILD-TYPE    135    104    181     83
D22V9, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              3              104
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      2      2
  TRERF1 WILD-TYPE    220    182    101
D22V10, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2              182
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      0      4
  TRERF1 WILD-TYPE    182    162    155
D22V11, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              0              162
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      0      4      1
  TRERF1 WILD-TYPE     89    138    184     88
D22V12, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0              138
  CLUS_3              4              184
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = CREBZF MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      0      0
  CREBZF WILD-TYPE      9     10      8
D23V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      0      0
  CREBZF WILD-TYPE      7      7      7      6
D23V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      1      6
  CREBZF WILD-TYPE    169    119    215
D23V3, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              169
  CLUS_2              1              119
  CLUS_3              6              215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      6      1
  CREBZF WILD-TYPE    222     81    162     41
D23V4, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              222
  CLUS_2              0               81
  CLUS_3              6              162
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      2      1      4
  CREBZF WILD-TYPE     91     93    124    111
D23V5, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               91
  CLUS_2              2               93
  CLUS_3              1              124
  CLUS_4              4              111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      6      1
  CREBZF WILD-TYPE     82    153    184
D23V6, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               82
  CLUS_2              6              153
  CLUS_3              1              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBZF MUTATED        0      1      2      4      0
  CREBZF WILD-TYPE    132    108    107    129     30
D23V7, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              2              107
  CLUS_4              4              129
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREBZF MUTATED        0      1      2      1      0      0      3
  CREBZF WILD-TYPE    134     70     34     65     91     41     71
D23V8, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              134
  CLUS_2              1               70
  CLUS_3              2               34
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      1      5      1
  CREBZF WILD-TYPE    136    106    178     82
D23V9, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              136
  CLUS_2              1              106
  CLUS_3              5              178
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      6      1
  CREBZF WILD-TYPE    222    178    102
D23V10, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              222
  CLUS_2              6              178
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        1      1      5
  CREBZF WILD-TYPE    183    161    154
D23V11, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              1              183
  CLUS_2              1              161
  CLUS_3              5              154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      6      1
  CREBZF WILD-TYPE     90    138    182     88
D23V12, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               90
  CLUS_2              0              138
  CLUS_3              6              182
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        0      0      0
  FAM47C WILD-TYPE      9     10      8
D24V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        0      0      0      0
  FAM47C WILD-TYPE      7      7      7      6
D24V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        3      5     10
  FAM47C WILD-TYPE    166    115    211
D24V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              166
  CLUS_2              5              115
  CLUS_3             10              211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        7      2      7      2
  FAM47C WILD-TYPE    215     79    161     40
D24V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              7              215
  CLUS_2              2               79
  CLUS_3              7              161
  CLUS_4              2               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        1      3      5      6
  FAM47C WILD-TYPE     90     92    120    109
D24V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               90
  CLUS_2              3               92
  CLUS_3              5              120
  CLUS_4              6              109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        5      6      4
  FAM47C WILD-TYPE     77    153    181
D24V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5               77
  CLUS_2              6              153
  CLUS_3              4              181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        2      3      5      8      0
  FAM47C WILD-TYPE    130    106    104    125     30
D24V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              130
  CLUS_2              3              106
  CLUS_3              5              104
  CLUS_4              8              125
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47C MUTATED        0      2      0      5      5      1      5
  FAM47C WILD-TYPE    134     69     36     61     86     40     69
D24V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0              134
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              5               61
  CLUS_5              5               86
  CLUS_6              1               40
  CLUS_7              5               69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        3      4      9      2
  FAM47C WILD-TYPE    133    103    174     81
D24V9, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              133
  CLUS_2              4              103
  CLUS_3              9              174
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        5     11      2
  FAM47C WILD-TYPE    217    173    101
D24V10, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5              217
  CLUS_2             11              173
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        3      3     12
  FAM47C WILD-TYPE    181    159    147
D24V11, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              181
  CLUS_2              3              159
  CLUS_3             12              147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        0      3     14      1
  FAM47C WILD-TYPE     90    135    174     88
D24V12, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0               90
  CLUS_2              3              135
  CLUS_3             14              174
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = MYST4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        0      1      0
  MYST4 WILD-TYPE      9      9      8
D25V1, multiclass
[1] "Remove cluster labels:" "MYST4 MUTATED"         
clus
  MYST4 MUTATED MYST4 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-DB-5270      TCGA-DB-5273 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        0      0      1      0
  MYST4 WILD-TYPE      7      7      6      6
D25V2, multiclass
[1] "Remove cluster labels:" "MYST4 MUTATED"         
clus
  MYST4 MUTATED MYST4 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-DB-5270      TCGA-DB-5273 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"MYST4 WILD-TYPE" "MYST4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        0      4      7
  MYST4 WILD-TYPE    169    116    214
D25V3, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             4             116
  CLUS_3             7             214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        2      2      7      0
  MYST4 WILD-TYPE    220     79    161     42
D25V4, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             7             161
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        2      0      6      2
  MYST4 WILD-TYPE     89     95    119    113
D25V5, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             0              95
  CLUS_3             6             119
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        1      3      6
  MYST4 WILD-TYPE     81    156    179
D25V6, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1              81
  CLUS_2             3             156
  CLUS_3             6             179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYST4 MUTATED        2      2      5      1      1
  MYST4 WILD-TYPE    130    107    104    132     29
D25V7, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             2             107
  CLUS_3             5             104
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYST4 MUTATED        2      1      2      0      4      1      1
  MYST4 WILD-TYPE    132     70     34     66     87     40     73
D25V8, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             2              34
  CLUS_4             0              66
  CLUS_5             4              87
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        1      3      3      4
  MYST4 WILD-TYPE    135    104    180     79
D25V9, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             3             104
  CLUS_3             3             180
  CLUS_4             4              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        5      4      2
  MYST4 WILD-TYPE    217    180    101
D25V10, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             5             217
  CLUS_2             4             180
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        1      7      3
  MYST4 WILD-TYPE    183    155    156
D25V11, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             7             155
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        1      5      4      1
  MYST4 WILD-TYPE     89    133    184     88
D25V12, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             5             133
  CLUS_3             4             184
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = MED9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      0      0
  MED9 WILD-TYPE      9     10      8
D26V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        0      0      0      0
  MED9 WILD-TYPE      7      7      7      6
D26V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      2      1
  MED9 WILD-TYPE    169    118    220
D26V3, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      1      1
  MED9 WILD-TYPE    221     81    167     41
D26V4, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            0             81
  CLUS_3            1            167
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      0      2
  MED9 WILD-TYPE     90     95    125    113
D26V5, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            0             95
  CLUS_3            0            125
  CLUS_4            2            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      2      0
  MED9 WILD-TYPE     81    157    185
D26V6, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1             81
  CLUS_2            2            157
  CLUS_3            0            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        1      0      0      1      1
  MED9 WILD-TYPE    131    109    109    132     29
D26V7, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            0            109
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED9 MUTATED        1      1      0      0      0      0      1
  MED9 WILD-TYPE    133     70     36     66     91     41     73
D26V8, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      2      0
  MED9 WILD-TYPE    135    107    181     83
D26V9, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            0            107
  CLUS_3            2            181
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      1      1
  MED9 WILD-TYPE    221    183    102
D26V10, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        2      0      1
  MED9 WILD-TYPE    182    162    158
D26V11, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            0            162
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        0      0      2      1
  MED9 WILD-TYPE     90    138    186     88
D26V12, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            2            186
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        0      1      0
  IRS4 WILD-TYPE      9      9      8
D27V1, multiclass
[1] "Remove cluster labels:" "IRS4 MUTATED"          
clus
  IRS4 MUTATED IRS4 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      1      0      0
  IRS4 WILD-TYPE      7      6      7      6
D27V2, multiclass
[1] "Remove cluster labels:" "IRS4 MUTATED"          
clus
  IRS4 MUTATED IRS4 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      4      1
  IRS4 WILD-TYPE    167    116    220
D27V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            4            116
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      2      1      1
  IRS4 WILD-TYPE    219     79    167     41
D27V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            2             79
  CLUS_3            1            167
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      2      2      2
  IRS4 WILD-TYPE     91     93    123    113
D27V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             91
  CLUS_2            2             93
  CLUS_3            2            123
  CLUS_4            2            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        1      1      4
  IRS4 WILD-TYPE     81    158    181
D27V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             81
  CLUS_2            1            158
  CLUS_3            4            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        3      2      0      2      0
  IRS4 WILD-TYPE    129    107    109    131     30
D27V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            129
  CLUS_2            2            107
  CLUS_3            0            109
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        3      0      1      1      0      2      0
  IRS4 WILD-TYPE    131     71     35     65     91     39     74
D27V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            131
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        1      3      3      0
  IRS4 WILD-TYPE    135    104    180     83
D27V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            3            104
  CLUS_3            3            180
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      3      2
  IRS4 WILD-TYPE    220    181    101
D27V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3            181
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        1      2      4
  IRS4 WILD-TYPE    183    160    155
D27V11, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        1      2      3      1
  IRS4 WILD-TYPE     89    136    185     88
D27V12, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            2            136
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = HTRA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        0      0      0
  HTRA2 WILD-TYPE      9     10      8
D28V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        0      0      0      0
  HTRA2 WILD-TYPE      7      7      7      6
D28V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        4      1      0
  HTRA2 WILD-TYPE    165    119    221
D28V3, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             4             165
  CLUS_2             1             119
  CLUS_3             0             221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      0      1      1
  HTRA2 WILD-TYPE    219     81    167     41
D28V4, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        1      1      1      1
  HTRA2 WILD-TYPE     90     94    124    114
D28V5, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             1              94
  CLUS_3             1             124
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        1      1      2
  HTRA2 WILD-TYPE     81    158    183
D28V6, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1              81
  CLUS_2             1             158
  CLUS_3             2             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        2      1      1      1      0
  HTRA2 WILD-TYPE    130    108    108    132     30
D28V7, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTRA2 MUTATED        2      1      1      0      0      0      1
  HTRA2 WILD-TYPE    132     70     35     66     91     41     73
D28V8, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      0      1      1
  HTRA2 WILD-TYPE    133    107    182     82
D28V9, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             0             107
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        3      2      0
  HTRA2 WILD-TYPE    219    182    103
D28V10, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             2             182
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        2      2      0
  HTRA2 WILD-TYPE    182    160    159
D28V11, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             0             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        2      1      1      0
  HTRA2 WILD-TYPE     88    137    187     89
D28V12, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2              88
  CLUS_2             1             137
  CLUS_3             1             187
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      1      0
  NRAS WILD-TYPE      9      9      8
D29V1, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      1      0
  NRAS WILD-TYPE      7      7      6      6
D29V2, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      0      3
  NRAS WILD-TYPE    168    120    218
D29V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            168
  CLUS_2            0            120
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        1      0      3      0
  NRAS WILD-TYPE    221     81    165     42
D29V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            221
  CLUS_2            0             81
  CLUS_3            3            165
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        1      1      1      1
  NRAS WILD-TYPE     90     94    124    114
D29V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            1            124
  CLUS_4            1            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        2      1      1
  NRAS WILD-TYPE     80    158    184
D29V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             80
  CLUS_2            1            158
  CLUS_3            1            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0      0      2      2      0
  NRAS WILD-TYPE    132    109    107    131     30
D29V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            132
  CLUS_2            0            109
  CLUS_3            2            107
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        0      0      1      1      0      1      1
  NRAS WILD-TYPE    134     71     35     65     91     40     73
D29V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      3      1
  NRAS WILD-TYPE    136    107    180     82
D29V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            136
  CLUS_2            0            107
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      2      1
  NRAS WILD-TYPE    221    182    102
D29V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      2      2
  NRAS WILD-TYPE    184    160    157
D29V11, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            184
  CLUS_2            2            160
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      2      2      0
  NRAS WILD-TYPE     90    136    186     89
D29V12, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             90
  CLUS_2            2            136
  CLUS_3            2            186
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = TNRC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      0      0
  TNRC18 WILD-TYPE      9     10      8
D30V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      0      0      0
  TNRC18 WILD-TYPE      7      7      7      6
D30V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      2      5
  TNRC18 WILD-TYPE    167    118    216
D30V3, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              2              118
  CLUS_3              5              216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        4      3      1      1
  TNRC18 WILD-TYPE    218     78    167     41
D30V4, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              3               78
  CLUS_3              1              167
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      1      3      3
  TNRC18 WILD-TYPE     91     94    122    112
D30V5, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              1               94
  CLUS_3              3              122
  CLUS_4              3              112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      3      4
  TNRC18 WILD-TYPE     82    156    181
D30V6, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               82
  CLUS_2              3              156
  CLUS_3              4              181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        1      3      0      4      1
  TNRC18 WILD-TYPE    131    106    109    129     29
D30V7, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              3              106
  CLUS_3              0              109
  CLUS_4              4              129
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC18 MUTATED        2      2      0      2      0      1      2
  TNRC18 WILD-TYPE    132     69     36     64     91     40     72
D30V8, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              2               64
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              2               72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        3      2      4      0
  TNRC18 WILD-TYPE    133    105    179     83
D30V9, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              2              105
  CLUS_3              4              179
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      4      3
  TNRC18 WILD-TYPE    220    180    100
D30V10, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              4              180
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      3      3
  TNRC18 WILD-TYPE    182    159    156
D30V11, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              3              159
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      2      4      2
  TNRC18 WILD-TYPE     90    136    184     87
D30V12, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              4              184
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = ZNF709 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        0      0      0
  ZNF709 WILD-TYPE      9     10      8
D31V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      0      0      0
  ZNF709 WILD-TYPE      7      7      7      6
D31V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        2      0      2
  ZNF709 WILD-TYPE    167    120    219
D31V3, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              0              120
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        2      0      2      0
  ZNF709 WILD-TYPE    220     81    166     42
D31V4, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              0               81
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      1      1
  ZNF709 WILD-TYPE     90     94    124    114
D31V5, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              1               94
  CLUS_3              1              124
  CLUS_4              1              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      1
  ZNF709 WILD-TYPE     81    157    184
D31V6, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               81
  CLUS_2              2              157
  CLUS_3              1              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      0      0      2      1
  ZNF709 WILD-TYPE    131    109    109    131     29
D31V7, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              0              109
  CLUS_3              0              109
  CLUS_4              2              131
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF709 MUTATED        0      0      0      0      2      1      1
  ZNF709 WILD-TYPE    134     71     36     66     89     40     73
D31V8, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      2      0
  ZNF709 WILD-TYPE    135    106    181     83
D31V9, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      1
  ZNF709 WILD-TYPE    221    182    102
D31V10, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              2              182
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        3      0      1
  ZNF709 WILD-TYPE    181    162    158
D31V11, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              0              162
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      2      0
  ZNF709 WILD-TYPE     89    137    186     89
D31V12, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = PLXNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        0      1      0
  PLXNA3 WILD-TYPE      9      9      8
D32V1, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-DB-5270       TCGA-DB-5273 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        0      0      1      0
  PLXNA3 WILD-TYPE      7      7      6      6
D32V2, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-DB-5270       TCGA-DB-5273 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        1      4      4
  PLXNA3 WILD-TYPE    168    116    217
D32V3, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1              168
  CLUS_2              4              116
  CLUS_3              4              217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        2      3      4      0
  PLXNA3 WILD-TYPE    220     78    164     42
D32V4, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              3               78
  CLUS_3              4              164
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        2      2      5      0
  PLXNA3 WILD-TYPE     89     93    120    115
D32V5, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               89
  CLUS_2              2               93
  CLUS_3              5              120
  CLUS_4              0              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        2      1      6
  PLXNA3 WILD-TYPE     80    158    179
D32V6, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               80
  CLUS_2              1              158
  CLUS_3              6              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        2      3      3      0      1
  PLXNA3 WILD-TYPE    130    106    106    133     29
D32V7, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              3              106
  CLUS_3              3              106
  CLUS_4              0              133
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLXNA3 MUTATED        2      2      0      0      4      1      0
  PLXNA3 WILD-TYPE    132     69     36     66     87     40     74
D32V8, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              4               87
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        3      3      1      2
  PLXNA3 WILD-TYPE    133    104    182     81
D32V9, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              3              104
  CLUS_3              1              182
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        5      1      3
  PLXNA3 WILD-TYPE    217    183    100
D32V10, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              5              217
  CLUS_2              1              183
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        4      4      1
  PLXNA3 WILD-TYPE    180    158    158
D32V11, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              4              180
  CLUS_2              4              158
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        1      3      3      2
  PLXNA3 WILD-TYPE     89    135    185     87
D32V12, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              3              135
  CLUS_3              3              185
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = ROBO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        0      0      0
  ROBO3 WILD-TYPE      9     10      8
D33V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        0      0      0      0
  ROBO3 WILD-TYPE      7      7      7      6
D33V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        2      0      3
  ROBO3 WILD-TYPE    167    120    218
D33V3, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             0             120
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        3      0      2      0
  ROBO3 WILD-TYPE    219     81    166     42
D33V4, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0              81
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      0      2      1
  ROBO3 WILD-TYPE     90     95    123    114
D33V5, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             0              95
  CLUS_3             2             123
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        0      1      3
  ROBO3 WILD-TYPE     82    158    182
D33V6, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             0              82
  CLUS_2             1             158
  CLUS_3             3             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        2      0      1      2      0
  ROBO3 WILD-TYPE    130    109    108    131     30
D33V7, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             0             109
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ROBO3 MUTATED        2      0      1      1      1      0      0
  ROBO3 WILD-TYPE    132     71     35     65     90     41     74
D33V8, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      0      2      2
  ROBO3 WILD-TYPE    135    107    181     81
D33V9, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             0             107
  CLUS_3             2             181
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        4      1      0
  ROBO3 WILD-TYPE    218    183    103
D33V10, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             4             218
  CLUS_2             1             183
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        2      2      1
  ROBO3 WILD-TYPE    182    160    158
D33V11, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      2      2      0
  ROBO3 WILD-TYPE     89    136    186     89
D33V12, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      0      0
  RB1 WILD-TYPE      9     10      8
D34V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      0      0      0
  RB1 WILD-TYPE      7      7      7      6
D34V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      6      0
  RB1 WILD-TYPE    169    114    221
D34V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           169
  CLUS_2           6           114
  CLUS_3           0           221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      5      1      0
  RB1 WILD-TYPE    222     76    167     42
D34V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           222
  CLUS_2           5            76
  CLUS_3           1           167
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        1      2      1      1
  RB1 WILD-TYPE     90     93    124    114
D34V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            90
  CLUS_2           2            93
  CLUS_3           1           124
  CLUS_4           1           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      1      3
  RB1 WILD-TYPE     81    158    182
D34V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            81
  CLUS_2           1           158
  CLUS_3           3           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        0      4      1      0      1
  RB1 WILD-TYPE    132    105    108    133     29
D34V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           132
  CLUS_2           4           105
  CLUS_3           1           108
  CLUS_4           0           133
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED        0      3      0      1      1      1      0
  RB1 WILD-TYPE    134     68     36     65     90     40     74
D34V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           134
  CLUS_2           3            68
  CLUS_3           0            36
  CLUS_4           1            65
  CLUS_5           1            90
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      1      1      1
  RB1 WILD-TYPE    133    106    182     82
D34V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           133
  CLUS_2           1           106
  CLUS_3           1           182
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      1      4
  RB1 WILD-TYPE    221    183     99
D34V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1           221
  CLUS_2           1           183
  CLUS_3           4            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        3      1      2
  RB1 WILD-TYPE    181    161    157
D34V11, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           181
  CLUS_2           1           161
  CLUS_3           2           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      1      2      3
  RB1 WILD-TYPE     90    137    186     86
D34V12, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            90
  CLUS_2           1           137
  CLUS_3           2           186
  CLUS_4           3            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = SRPX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        0      1      0
  SRPX WILD-TYPE      9      9      8
D35V1, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      0      1      0
  SRPX WILD-TYPE      7      7      6      6
D35V2, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        0      2      2
  SRPX WILD-TYPE    169    118    219
D35V3, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      2      2      0
  SRPX WILD-TYPE    222     79    166     42
D35V4, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            222
  CLUS_2            2             79
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      1      2      0
  SRPX WILD-TYPE     90     94    123    115
D35V5, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            2            123
  CLUS_4            0            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      0      3
  SRPX WILD-TYPE     81    159    182
D35V6, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             81
  CLUS_2            0            159
  CLUS_3            3            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        0      2      2      0      0
  SRPX WILD-TYPE    132    107    107    133     30
D35V7, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            132
  CLUS_2            2            107
  CLUS_3            2            107
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRPX MUTATED        0      2      1      0      1      0      0
  SRPX WILD-TYPE    134     69     35     66     90     41     74
D35V8, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            134
  CLUS_2            2             69
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        2      1      0      1
  SRPX WILD-TYPE    134    106    183     82
D35V9, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            134
  CLUS_2            1            106
  CLUS_3            0            183
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      0      2
  SRPX WILD-TYPE    220    184    101
D35V10, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            220
  CLUS_2            0            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        3      1      0
  SRPX WILD-TYPE    181    161    159
D35V11, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            3            181
  CLUS_2            1            161
  CLUS_3            0            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      2      0      2
  SRPX WILD-TYPE     90    136    188     87
D35V12, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             90
  CLUS_2            2            136
  CLUS_3            0            188
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = PDGFRA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        0      0      0
  PDGFRA WILD-TYPE      9     10      8
D36V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        0      0      0      0
  PDGFRA WILD-TYPE      7      7      7      6
D36V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        5      3      2
  PDGFRA WILD-TYPE    164    117    219
D36V3, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              5              164
  CLUS_2              3              117
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        3      5      2      0
  PDGFRA WILD-TYPE    219     76    166     42
D36V4, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3              219
  CLUS_2              5               76
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        2      4      2      0
  PDGFRA WILD-TYPE     89     91    123    115
D36V5, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2               89
  CLUS_2              4               91
  CLUS_3              2              123
  CLUS_4              0              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        1      1      6
  PDGFRA WILD-TYPE     81    158    179
D36V6, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1               81
  CLUS_2              1              158
  CLUS_3              6              179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRA MUTATED        1      7      2      0      0
  PDGFRA WILD-TYPE    131    102    107    133     30
D36V7, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              131
  CLUS_2              7              102
  CLUS_3              2              107
  CLUS_4              0              133
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDGFRA MUTATED        0      3      1      0      1      5      0
  PDGFRA WILD-TYPE    134     68     35     66     90     36     74
D36V8, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              0              134
  CLUS_2              3               68
  CLUS_3              1               35
  CLUS_4              0               66
  CLUS_5              1               90
  CLUS_6              5               36
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        1      7      0      2
  PDGFRA WILD-TYPE    135    100    183     81
D36V9, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              135
  CLUS_2              7              100
  CLUS_3              0              183
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        2      1      7
  PDGFRA WILD-TYPE    220    183     96
D36V10, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1              183
  CLUS_3              7               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        3      3      4
  PDGFRA WILD-TYPE    181    159    155
D36V11, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3              181
  CLUS_2              3              159
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        0      2      4      4
  PDGFRA WILD-TYPE     90    136    184     85
D36V12, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              4              184
  CLUS_4              4               85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = ZNF512B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        0      0      0
  ZNF512B WILD-TYPE      9     10      8
D37V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        0      0      0      0
  ZNF512B WILD-TYPE      7      7      7      6
D37V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        3      1      1
  ZNF512B WILD-TYPE    166    119    220
D37V3, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               3               166
  CLUS_2               1               119
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        3      1      1      0
  ZNF512B WILD-TYPE    219     80    167     42
D37V4, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               3               219
  CLUS_2               1                80
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      1      1      2
  ZNF512B WILD-TYPE     90     94    124    113
D37V5, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1                94
  CLUS_3               1               124
  CLUS_4               2               113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        2      1      2
  ZNF512B WILD-TYPE     80    158    183
D37V6, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               2                80
  CLUS_2               1               158
  CLUS_3               2               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF512B MUTATED        1      1      1      2      0
  ZNF512B WILD-TYPE    131    108    108    131     30
D37V7, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               1               108
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF512B MUTATED        1      0      0      1      1      1      1
  ZNF512B WILD-TYPE    133     71     36     65     90     40     73
D37V8, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               1                65
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      1      2      1
  ZNF512B WILD-TYPE    135    106    181     82
D37V9, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               135
  CLUS_2               1               106
  CLUS_3               2               181
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        2      2      1
  ZNF512B WILD-TYPE    220    182    102
D37V10, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               2               220
  CLUS_2               2               182
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        1      1      3
  ZNF512B WILD-TYPE    183    161    156
D37V11, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               183
  CLUS_2               1               161
  CLUS_3               3               156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      0      4      0
  ZNF512B WILD-TYPE     89    138    184     89
D37V12, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               4               184
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      0      0
  ZMIZ1 WILD-TYPE      9     10      8
D38V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      0      0      0
  ZMIZ1 WILD-TYPE      7      7      7      6
D38V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      3      6
  ZMIZ1 WILD-TYPE    169    117    215
D38V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             3             117
  CLUS_3             6             215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      2      5      0
  ZMIZ1 WILD-TYPE    220     79    163     42
D38V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             5             163
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      0      2      5
  ZMIZ1 WILD-TYPE     89     95    123    110
D38V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             0              95
  CLUS_3             2             123
  CLUS_4             5             110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      6      2
  ZMIZ1 WILD-TYPE     81    153    183
D38V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              81
  CLUS_2             6             153
  CLUS_3             2             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        1      1      3      3      1
  ZMIZ1 WILD-TYPE    131    108    106    130     29
D38V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             3             106
  CLUS_4             3             130
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ1 MUTATED        1      0      0      2      4      1      1
  ZMIZ1 WILD-TYPE    133     71     36     64     87     40     73
D38V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             2              64
  CLUS_5             4              87
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        1      2      3      3
  ZMIZ1 WILD-TYPE    135    105    180     80
D38V9, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             3             180
  CLUS_4             3              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        5      2      2
  ZMIZ1 WILD-TYPE    217    182    101
D38V10, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             5             217
  CLUS_2             2             182
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      6      3
  ZMIZ1 WILD-TYPE    184    156    156
D38V11, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             6             156
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      4      4      1
  ZMIZ1 WILD-TYPE     90    134    184     88
D38V12, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             4             134
  CLUS_3             4             184
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = TMEM216 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      0      0
  TMEM216 WILD-TYPE      9     10      8
D39V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      0      0      0
  TMEM216 WILD-TYPE      7      7      7      6
D39V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        2      1      0
  TMEM216 WILD-TYPE    167    119    221
D39V3, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               2               167
  CLUS_2               1               119
  CLUS_3               0               221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        2      0      1      0
  TMEM216 WILD-TYPE    220     81    167     42
D39V4, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               0                81
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        1      1      0      1
  TMEM216 WILD-TYPE     90     94    125    114
D39V5, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1                94
  CLUS_3               0               125
  CLUS_4               1               114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      2      1
  TMEM216 WILD-TYPE     82    157    184
D39V6, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0                82
  CLUS_2               2               157
  CLUS_3               1               184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM216 MUTATED        1      0      1      1      0
  TMEM216 WILD-TYPE    131    109    108    132     30
D39V7, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               0               109
  CLUS_3               1               108
  CLUS_4               1               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM216 MUTATED        1      0      1      0      0      0      1
  TMEM216 WILD-TYPE    133     71     35     66     91     41     73
D39V8, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      1      1      1
  TMEM216 WILD-TYPE    136    106    182     82
D39V9, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               1               106
  CLUS_3               1               182
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        1      2      0
  TMEM216 WILD-TYPE    221    182    103
D39V10, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               0               103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      2      1
  TMEM216 WILD-TYPE    184    160    158
D39V11, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               184
  CLUS_2               2               160
  CLUS_3               1               158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      2      1      0
  TMEM216 WILD-TYPE     90    136    187     89
D39V12, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0                90
  CLUS_2               2               136
  CLUS_3               1               187
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = ARID2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        1      0      0
  ARID2 WILD-TYPE      8     10      8
D40V1, multiclass
[1] "Remove cluster labels:" "ARID2 MUTATED"         
clus
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5304      TCGA-E1-5311 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      0      0      0
  ARID2 WILD-TYPE      6      7      7      6
D40V2, multiclass
[1] "Remove cluster labels:" "ARID2 MUTATED"         
clus
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5304      TCGA-E1-5311 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        4      3      4
  ARID2 WILD-TYPE    165    117    217
D40V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4             165
  CLUS_2             3             117
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        5      4      2      0
  ARID2 WILD-TYPE    217     77    166     42
D40V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5             217
  CLUS_2             4              77
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      3      2      2
  ARID2 WILD-TYPE     90     92    123    113
D40V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             3              92
  CLUS_3             2             123
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        1      2      5
  ARID2 WILD-TYPE     81    157    180
D40V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              81
  CLUS_2             2             157
  CLUS_3             5             180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        3      4      2      1      1
  ARID2 WILD-TYPE    129    105    107    132     29
D40V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             129
  CLUS_2             4             105
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID2 MUTATED        3      2      1      1      2      2      0
  ARID2 WILD-TYPE    131     69     35     65     89     39     74
D40V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             131
  CLUS_2             2              69
  CLUS_3             1              35
  CLUS_4             1              65
  CLUS_5             2              89
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        2      4      3      1
  ARID2 WILD-TYPE    134    103    180     82
D40V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             4             103
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        3      3      4
  ARID2 WILD-TYPE    219    181     99
D40V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3             181
  CLUS_3             4              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        3      2      5
  ARID2 WILD-TYPE    181    160    154
D40V11, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             2             160
  CLUS_3             5             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      1      5      3
  ARID2 WILD-TYPE     89    137    183     86
D40V12, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             5             183
  CLUS_4             3              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = RBPJ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      0      0
  RBPJ WILD-TYPE      9     10      8
D41V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      0      0      0
  RBPJ WILD-TYPE      7      7      7      6
D41V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        2      2      3
  RBPJ WILD-TYPE    167    118    218
D41V3, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        1      1      5      0
  RBPJ WILD-TYPE    221     80    163     42
D41V4, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1             80
  CLUS_3            5            163
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      3      2      0
  RBPJ WILD-TYPE     91     92    123    115
D41V5, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             91
  CLUS_2            3             92
  CLUS_3            2            123
  CLUS_4            0            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      0      5
  RBPJ WILD-TYPE     82    159    180
D41V6, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             82
  CLUS_2            0            159
  CLUS_3            5            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBPJ MUTATED        0      2      3      2      0
  RBPJ WILD-TYPE    132    107    106    131     30
D41V7, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            132
  CLUS_2            2            107
  CLUS_3            3            106
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBPJ MUTATED        0      0      4      0      1      2      0
  RBPJ WILD-TYPE    134     71     32     66     90     39     74
D41V8, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            4             32
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      2      4      1
  RBPJ WILD-TYPE    136    105    179     82
D41V9, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            4            179
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      5      2
  RBPJ WILD-TYPE    222    179    101
D41V10, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            222
  CLUS_2            5            179
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        1      1      5
  RBPJ WILD-TYPE    183    161    154
D41V11, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            5            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      1      4      2
  RBPJ WILD-TYPE     90    137    184     87
D41V12, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            4            184
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = CUL4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        0      0      0
  CUL4B WILD-TYPE      9     10      8
D42V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        0      0      0      0
  CUL4B WILD-TYPE      7      7      7      6
D42V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      3      6
  CUL4B WILD-TYPE    168    117    215
D42V3, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             6             215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        2      5      3      0
  CUL4B WILD-TYPE    220     76    165     42
D42V4, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2             220
  CLUS_2             5              76
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        2      3      2      0
  CUL4B WILD-TYPE     89     92    123    115
D42V5, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2              89
  CLUS_2             3              92
  CLUS_3             2             123
  CLUS_4             0             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      1      5
  CUL4B WILD-TYPE     81    158    180
D42V6, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              81
  CLUS_2             1             158
  CLUS_3             5             180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        1      6      2      1      0
  CUL4B WILD-TYPE    131    103    107    132     30
D42V7, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             131
  CLUS_2             6             103
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL4B MUTATED        1      3      1      0      1      3      1
  CUL4B WILD-TYPE    133     68     35     66     90     38     73
D42V8, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             133
  CLUS_2             3              68
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      5      3      1
  CUL4B WILD-TYPE    135    102    180     82
D42V9, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             135
  CLUS_2             5             102
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      3      6
  CUL4B WILD-TYPE    221    181     97
D42V10, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3             181
  CLUS_3             6              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        4      3      3
  CUL4B WILD-TYPE    180    159    156
D42V11, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             4             180
  CLUS_2             3             159
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      2      3      4
  CUL4B WILD-TYPE     89    136    185     85
D42V12, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             3             185
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = SLC6A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      0      0
  SLC6A3 WILD-TYPE      9     10      8
D43V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      0      0      0
  SLC6A3 WILD-TYPE      7      7      7      6
D43V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        3      3      3
  SLC6A3 WILD-TYPE    166    117    218
D43V3, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              166
  CLUS_2              3              117
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        4      2      3      0
  SLC6A3 WILD-TYPE    218     79    165     42
D43V4, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              2               79
  CLUS_3              3              165
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      2      4      1
  SLC6A3 WILD-TYPE     91     93    121    114
D43V5, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              2               93
  CLUS_3              4              121
  CLUS_4              1              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      0      7
  SLC6A3 WILD-TYPE     82    159    178
D43V6, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               82
  CLUS_2              0              159
  CLUS_3              7              178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A3 MUTATED        3      2      3      1      0
  SLC6A3 WILD-TYPE    129    107    106    132     30
D43V7, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              129
  CLUS_2              2              107
  CLUS_3              3              106
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A3 MUTATED        3      1      2      1      1      1      0
  SLC6A3 WILD-TYPE    131     70     34     65     90     40     74
D43V8, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              1               70
  CLUS_3              2               34
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        2      4      1      2
  SLC6A3 WILD-TYPE    134    103    182     81
D43V9, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              2              134
  CLUS_2              4              103
  CLUS_3              1              182
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        4      2      3
  SLC6A3 WILD-TYPE    218    182    100
D43V10, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              2              182
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        3      2      4
  SLC6A3 WILD-TYPE    181    160    155
D43V11, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              2              160
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        3      1      4      1
  SLC6A3 WILD-TYPE     87    137    184     88
D43V12, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3               87
  CLUS_2              1              137
  CLUS_3              4              184
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        0      1      0
  SETD2 WILD-TYPE      9      9      8
D44V1, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        0      1      0      0
  SETD2 WILD-TYPE      7      6      7      6
D44V2, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2      6      2
  SETD2 WILD-TYPE    167    114    219
D44V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             6             114
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        3      5      2      0
  SETD2 WILD-TYPE    219     76    166     42
D44V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             5              76
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2      2      2      2
  SETD2 WILD-TYPE     89     93    123    113
D44V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             2              93
  CLUS_3             2             123
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2      3      3
  SETD2 WILD-TYPE     80    156    182
D44V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              80
  CLUS_2             3             156
  CLUS_3             3             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0      5      2      0      3
  SETD2 WILD-TYPE    132    104    107    133     27
D44V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             5             104
  CLUS_3             2             107
  CLUS_4             0             133
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD2 MUTATED        1      2      0      1      1      4      1
  SETD2 WILD-TYPE    133     69     36     65     90     37     73
D44V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             4              37
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2      4      3      1
  SETD2 WILD-TYPE    134    103    180     82
D44V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             4             103
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        3      2      5
  SETD2 WILD-TYPE    219    182     98
D44V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             2             182
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        3      3      4
  SETD2 WILD-TYPE    181    159    155
D44V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             3             159
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        1      2      3      4
  SETD2 WILD-TYPE     89    136    185     85
D44V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             3             185
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = KRT3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        0      0      0
  KRT3 WILD-TYPE      9     10      8
D45V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        0      0      0      0
  KRT3 WILD-TYPE      7      7      7      6
D45V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        2      1      1
  KRT3 WILD-TYPE    167    119    220
D45V3, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      1      1      0
  KRT3 WILD-TYPE    220     80    167     42
D45V4, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        1      1      1      0
  KRT3 WILD-TYPE     90     94    124    115
D45V5, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            1            124
  CLUS_4            0            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        0      0      3
  KRT3 WILD-TYPE     82    159    182
D45V6, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            0             82
  CLUS_2            0            159
  CLUS_3            3            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT3 MUTATED        2      1      1      0      0
  KRT3 WILD-TYPE    130    108    108    133     30
D45V7, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT3 MUTATED        1      1      0      0      1      1      0
  KRT3 WILD-TYPE    133     70     36     66     90     40     74
D45V8, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      1      0      1
  KRT3 WILD-TYPE    134    106    183     82
D45V9, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            1            106
  CLUS_3            0            183
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        2      0      2
  KRT3 WILD-TYPE    220    184    101
D45V10, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            0            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        3      1      0
  KRT3 WILD-TYPE    181    161    159
D45V11, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            3            181
  CLUS_2            1            161
  CLUS_3            0            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      0      1      1
  KRT3 WILD-TYPE     88    138    187     88
D45V12, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            0            138
  CLUS_3            1            187
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = MYT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        0      0      0
  MYT1 WILD-TYPE      9     10      8
D46V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      0      0      0
  MYT1 WILD-TYPE      7      7      7      6
D46V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        5      1      0
  MYT1 WILD-TYPE    164    119    221
D46V3, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            5            164
  CLUS_2            1            119
  CLUS_3            0            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        4      1      0      1
  MYT1 WILD-TYPE    218     80    168     41
D46V4, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            4            218
  CLUS_2            1             80
  CLUS_3            0            168
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      0      1      1
  MYT1 WILD-TYPE     91     95    124    114
D46V5, multiclass
[1] "Remove cluster labels:" "MYT1 MUTATED"          
clus
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            424 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3     TCGA-DU-A6S8 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O     TCGA-DU-A76R 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB     TCGA-DU-A7TD 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A7TG     TCGA-DU-A7TJ     TCGA-E1-5302     TCGA-E1-5303 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322     TCGA-E1-A7YH 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YI     TCGA-E1-A7YJ     TCGA-E1-A7YL     TCGA-E1-A7YM 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YN     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z3 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-EZ-7264     TCGA-F6-A8O3     TCGA-F6-A8O4 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-5962     TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-6688     TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7634     TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7641     TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8189     TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A60L     TCGA-FG-A6IZ     TCGA-FG-A6J3     TCGA-FG-A70Y 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A70Z     TCGA-FG-A710     TCGA-FG-A713     TCGA-FG-A87N 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7467     TCGA-HT-7468     TCGA-HT-7469 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472     TCGA-HT-7473 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476     TCGA-HT-7477 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480     TCGA-HT-7481 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485     TCGA-HT-7601 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604     TCGA-HT-7605 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608     TCGA-HT-7609 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616     TCGA-HT-7620 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680     TCGA-HT-7681 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687     TCGA-HT-7688 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691     TCGA-HT-7692 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695     TCGA-HT-7854 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857     TCGA-HT-7858 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874     TCGA-HT-7875 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880     TCGA-HT-7881 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902     TCGA-HT-8010 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013     TCGA-HT-8015 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8019     TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8107     TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8113     TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A4DV     TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A5RB     TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A617     TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A61B     TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A74O     TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7490     TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        0      1      1
  MYT1 WILD-TYPE     82    158    184
D46V6, multiclass
[1] "Remove cluster labels:" "MYT1 MUTATED"          
clus
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            424 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64O     TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64S     TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A64X     TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A75O     TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-A66D     TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3     TCGA-DU-A6S8 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O     TCGA-DU-A76R 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB     TCGA-DU-A7TD 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A7TG     TCGA-DU-A7TJ     TCGA-E1-5302     TCGA-E1-5303 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322     TCGA-E1-A7YH 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YI     TCGA-E1-A7YJ     TCGA-E1-A7YL     TCGA-E1-A7YM 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YN     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z3 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-EZ-7264     TCGA-F6-A8O3     TCGA-F6-A8O4 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-5962     TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-6688     TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7634     TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7641     TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8189     TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A60L     TCGA-FG-A6IZ     TCGA-FG-A6J3     TCGA-FG-A70Y 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A70Z     TCGA-FG-A710     TCGA-FG-A713     TCGA-FG-A87N 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7467     TCGA-HT-7468     TCGA-HT-7469 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472     TCGA-HT-7473 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476     TCGA-HT-7477 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480     TCGA-HT-7481 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485     TCGA-HT-7601 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604     TCGA-HT-7605 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608     TCGA-HT-7609 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616     TCGA-HT-7620 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680     TCGA-HT-7681 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687     TCGA-HT-7688 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691     TCGA-HT-7692 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695     TCGA-HT-7854 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857     TCGA-HT-7858 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874     TCGA-HT-7875 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880     TCGA-HT-7881 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902     TCGA-HT-8010 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013     TCGA-HT-8015 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8019     TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8107     TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8113     TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A4DV     TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A5RB     TCGA-HT-A614     TCGA-HT-A615     TCGA-HT-A616 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A617     TCGA-HT-A618     TCGA-HT-A619     TCGA-HT-A61A 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A61B     TCGA-HT-A74H     TCGA-HT-A74J     TCGA-HT-A74L 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A74O     TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7490     TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU     TCGA-P5-A5EV 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY     TCGA-P5-A5EZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2     TCGA-P5-A5F4 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W     TCGA-P5-A72X 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731     TCGA-P5-A733 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737     TCGA-P5-A77W 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781     TCGA-QH-A65S 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z     TCGA-QH-A6CS 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW     TCGA-QH-A6CX 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4     TCGA-QH-A6X5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA     TCGA-QH-A6XC 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK     TCGA-R8-A6ML 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X     TCGA-RY-A83Y 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845     TCGA-S9-A6TS 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX     TCGA-S9-A6TY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5     TCGA-S9-A6U6 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE     TCGA-S9-A6WG 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP     TCGA-S9-A6WQ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY     TCGA-S9-A7IZ 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2     TCGA-S9-A7QX 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4     TCGA-S9-A7R8 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S     TCGA-TQ-A7RF 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK     TCGA-TQ-A7RN 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS     TCGA-TQ-A7RV 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8     TCGA-VM-A8C9 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD     TCGA-VM-A8CE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M     TCGA-VW-A7QS 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C     TCGA-WY-A85D 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYT1 MUTATED        2      3      0      1      0
  MYT1 WILD-TYPE    130    106    109    132     30
D46V7, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            3            106
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYT1 MUTATED        2      0      0      1      0      3      0
  MYT1 WILD-TYPE    132     71     36     65     91     38     74
D46V8, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            3             38
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      2      3      1
  MYT1 WILD-TYPE    136    105    180     82
D46V9, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        2      2      2
  MYT1 WILD-TYPE    220    182    101
D46V10, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2            182
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        1      2      3
  MYT1 WILD-TYPE    183    160    156
D46V11, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        1      1      3      1
  MYT1 WILD-TYPE     89    137    185     88
D46V12, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = SMOC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      0      0
  SMOC1 WILD-TYPE      8     10      8
D47V1, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390      TCGA-CS-5394 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        1      0      0      0
  SMOC1 WILD-TYPE      6      7      7      6
D47V2, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390      TCGA-CS-5394 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      1      1
  SMOC1 WILD-TYPE    168    119    220
D47V3, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      1      0
  SMOC1 WILD-TYPE    220     81    167     42
D47V4, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        0      0      1      1
  SMOC1 WILD-TYPE     91     95    124    114
D47V5, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              2             424 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DB-A64L      TCGA-DB-A64O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64P      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75K      TCGA-DB-A75L      TCGA-DB-A75M      TCGA-DB-A75O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75P      TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7US      TCGA-DU-5847 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-DU-A6S2      TCGA-DU-A6S3      TCGA-DU-A6S8 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A76K      TCGA-DU-A76L      TCGA-DU-A76O      TCGA-DU-A76R 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A7T6      TCGA-DU-A7TA      TCGA-DU-A7TB      TCGA-DU-A7TD 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A7TG      TCGA-DU-A7TJ      TCGA-E1-5302      TCGA-E1-5303 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-E1-A7YH 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YI      TCGA-E1-A7YJ      TCGA-E1-A7YL      TCGA-E1-A7YM 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YN      TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z3 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7Z6      TCGA-EZ-7264      TCGA-F6-A8O3      TCGA-F6-A8O4 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A60L      TCGA-FG-A6IZ      TCGA-FG-A6J3      TCGA-FG-A70Y 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A70Z      TCGA-FG-A710      TCGA-FG-A713      TCGA-FG-A87N 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A87Q      TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7474      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7611      TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7677      TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7690      TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7856      TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7873      TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7879      TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7884      TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8012      TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8019      TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8107      TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8113      TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A4DV      TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A5RB      TCGA-HT-A614      TCGA-HT-A615      TCGA-HT-A616 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A617      TCGA-HT-A618      TCGA-HT-A619      TCGA-HT-A61A 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A61B      TCGA-HT-A74H      TCGA-HT-A74J      TCGA-HT-A74L 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A74O      TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7490      TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-8320      TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-A5KK      TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-KT-A74X      TCGA-P5-A5ET      TCGA-P5-A5EU      TCGA-P5-A5EV 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY      TCGA-P5-A5EZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2      TCGA-P5-A5F4 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F6      TCGA-P5-A72U      TCGA-P5-A72W      TCGA-P5-A72X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A72Z      TCGA-P5-A730      TCGA-P5-A731      TCGA-P5-A733 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A735      TCGA-P5-A736      TCGA-P5-A737      TCGA-P5-A77W 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A77X      TCGA-P5-A780      TCGA-P5-A781      TCGA-QH-A65S 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A65V      TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CU      TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CY      TCGA-QH-A6CZ      TCGA-QH-A6X4      TCGA-QH-A6X5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-R8-A6MK      TCGA-R8-A6ML 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-R8-A6MO      TCGA-R8-A6YH      TCGA-RY-A83X      TCGA-RY-A83Y 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-RY-A83Z      TCGA-RY-A843      TCGA-RY-A845      TCGA-S9-A6TS 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6TU      TCGA-S9-A6TV      TCGA-S9-A6TX      TCGA-S9-A6TY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U5      TCGA-S9-A6U6 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6U9      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WN      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IY      TCGA-S9-A7IZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7QX 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R4      TCGA-S9-A7R8 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TM-A7C5      TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TQ-A7RF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RG      TCGA-TQ-A7RH      TCGA-TQ-A7RK      TCGA-TQ-A7RN 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS      TCGA-TQ-A7RV 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RW      TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8C9 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VM-A8CA      TCGA-VM-A8CB      TCGA-VM-A8CD      TCGA-VM-A8CE 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VM-A8CH      TCGA-VV-A829      TCGA-VV-A86M      TCGA-VW-A7QS 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-W9-A837      TCGA-WY-A85B      TCGA-WY-A85C      TCGA-WY-A85D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      1      0
  SMOC1 WILD-TYPE     81    158    185
D47V6, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              2             424 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DB-A64L      TCGA-DB-A64O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64P      TCGA-DB-A64Q      TCGA-DB-A64R      TCGA-DB-A64S 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A64U      TCGA-DB-A64V      TCGA-DB-A64W      TCGA-DB-A64X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75K      TCGA-DB-A75L      TCGA-DB-A75M      TCGA-DB-A75O 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A75P      TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5143      TCGA-DH-5144      TCGA-DH-A66B      TCGA-DH-A66D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-A66F      TCGA-DH-A66G      TCGA-DH-A7US      TCGA-DU-5847 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-DU-A6S2      TCGA-DU-A6S3      TCGA-DU-A6S8 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A76K      TCGA-DU-A76L      TCGA-DU-A76O      TCGA-DU-A76R 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A7T6      TCGA-DU-A7TA      TCGA-DU-A7TB      TCGA-DU-A7TD 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A7TG      TCGA-DU-A7TJ      TCGA-E1-5302      TCGA-E1-5303 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-E1-A7YH 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YI      TCGA-E1-A7YJ      TCGA-E1-A7YL      TCGA-E1-A7YM 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YN      TCGA-E1-A7YQ      TCGA-E1-A7YS      TCGA-E1-A7YV 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7YW      TCGA-E1-A7YY      TCGA-E1-A7Z2      TCGA-E1-A7Z3 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-A7Z6      TCGA-EZ-7264      TCGA-F6-A8O3      TCGA-F6-A8O4 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A60L      TCGA-FG-A6IZ      TCGA-FG-A6J3      TCGA-FG-A70Y 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A70Z      TCGA-FG-A710      TCGA-FG-A713      TCGA-FG-A87N 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A87Q      TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7474      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7611      TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7677      TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7690      TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7856      TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7873      TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7879      TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7884      TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8012      TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8019      TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8107      TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8113      TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A4DV      TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A5RB      TCGA-HT-A614      TCGA-HT-A615      TCGA-HT-A616 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A617      TCGA-HT-A618      TCGA-HT-A619      TCGA-HT-A61A 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A61B      TCGA-HT-A74H      TCGA-HT-A74J      TCGA-HT-A74L 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A74O      TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7490      TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-8320      TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-A5KK      TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-KT-A74X      TCGA-P5-A5ET      TCGA-P5-A5EU      TCGA-P5-A5EV 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY      TCGA-P5-A5EZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2      TCGA-P5-A5F4 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F6      TCGA-P5-A72U      TCGA-P5-A72W      TCGA-P5-A72X 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A72Z      TCGA-P5-A730      TCGA-P5-A731      TCGA-P5-A733 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A735      TCGA-P5-A736      TCGA-P5-A737      TCGA-P5-A77W 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A77X      TCGA-P5-A780      TCGA-P5-A781      TCGA-QH-A65S 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A65V      TCGA-QH-A65X      TCGA-QH-A65Z      TCGA-QH-A6CS 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CU      TCGA-QH-A6CV      TCGA-QH-A6CW      TCGA-QH-A6CX 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6CY      TCGA-QH-A6CZ      TCGA-QH-A6X4      TCGA-QH-A6X5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A6X8      TCGA-QH-A6X9      TCGA-QH-A6XA      TCGA-QH-A6XC 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-QH-A86X      TCGA-QH-A870      TCGA-R8-A6MK      TCGA-R8-A6ML 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-R8-A6MO      TCGA-R8-A6YH      TCGA-RY-A83X      TCGA-RY-A83Y 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-RY-A83Z      TCGA-RY-A843      TCGA-RY-A845      TCGA-S9-A6TS 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6TU      TCGA-S9-A6TV      TCGA-S9-A6TX      TCGA-S9-A6TY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6U0      TCGA-S9-A6U1      TCGA-S9-A6U5      TCGA-S9-A6U6 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6U9      TCGA-S9-A6WD      TCGA-S9-A6WE      TCGA-S9-A6WG 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A6WH      TCGA-S9-A6WN      TCGA-S9-A6WP      TCGA-S9-A6WQ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7IQ      TCGA-S9-A7IS      TCGA-S9-A7IY      TCGA-S9-A7IZ 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7J0      TCGA-S9-A7J1      TCGA-S9-A7J2      TCGA-S9-A7QX 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-S9-A7QZ      TCGA-S9-A7R1      TCGA-S9-A7R4      TCGA-S9-A7R8 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TM-A7C5      TCGA-TM-A84R      TCGA-TM-A84S      TCGA-TQ-A7RF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RG      TCGA-TQ-A7RH      TCGA-TQ-A7RK      TCGA-TQ-A7RN 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RQ      TCGA-TQ-A7RR      TCGA-TQ-A7RS      TCGA-TQ-A7RV 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-TQ-A7RW      TCGA-TQ-A8XE      TCGA-VM-A8C8      TCGA-VM-A8C9 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VM-A8CA      TCGA-VM-A8CB      TCGA-VM-A8CD      TCGA-VM-A8CE 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-VM-A8CH      TCGA-VV-A829      TCGA-VV-A86M      TCGA-VW-A7QS 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-W9-A837      TCGA-WY-A85B      TCGA-WY-A85C      TCGA-WY-A85D 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMOC1 MUTATED        1      1      0      1      0
  SMOC1 WILD-TYPE    131    108    109    132     30
D47V7, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMOC1 MUTATED        2      0      0      0      0      0      1
  SMOC1 WILD-TYPE    132     71     36     66     91     41     73
D47V8, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      1      0
  SMOC1 WILD-TYPE    134    107    182     83
D47V9, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             0             107
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        2      1      0
  SMOC1 WILD-TYPE    220    183    103
D47V10, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1             183
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        2      0      1
  SMOC1 WILD-TYPE    182    162    158
D47V11, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             0             162
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      1      0
  SMOC1 WILD-TYPE     88    138    187     89
D47V12, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2              88
  CLUS_2             0             138
  CLUS_3             1             187
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        0      0      0
  ZBTB20 WILD-TYPE      9     10      8
D48V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        0      0      0      0
  ZBTB20 WILD-TYPE      7      7      7      6
D48V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        3      2     16
  ZBTB20 WILD-TYPE    166    118    205
D48V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              166
  CLUS_2              2              118
  CLUS_3             16              205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      2     16      0
  ZBTB20 WILD-TYPE    219     79    152     42
D48V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3             16              152
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        4      2      5      5
  ZBTB20 WILD-TYPE     87     93    120    110
D48V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4               87
  CLUS_2              2               93
  CLUS_3              5              120
  CLUS_4              5              110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        4      8      4
  ZBTB20 WILD-TYPE     78    151    181
D48V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4               78
  CLUS_2              8              151
  CLUS_3              4              181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        1      2      5     11      2
  ZBTB20 WILD-TYPE    131    107    104    122     28
D48V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              2              107
  CLUS_3              5              104
  CLUS_4             11              122
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB20 MUTATED        1      0      4      2      6      2      6
  ZBTB20 WILD-TYPE    133     71     32     64     85     39     68
D48V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              4               32
  CLUS_4              2               64
  CLUS_5              6               85
  CLUS_6              2               39
  CLUS_7              6               68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      2     12      4
  ZBTB20 WILD-TYPE    133    105    171     79
D48V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              2              105
  CLUS_3             12              171
  CLUS_4              4               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        5     14      2
  ZBTB20 WILD-TYPE    217    170    101
D48V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              5              217
  CLUS_2             14              170
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        3      7     11
  ZBTB20 WILD-TYPE    181    155    148
D48V11, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              7              155
  CLUS_3             11              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        1      5     14      1
  ZBTB20 WILD-TYPE     89    133    174     88
D48V12, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              5              133
  CLUS_3             14              174
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = PPL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        0      0      0
  PPL WILD-TYPE      9     10      8
D49V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      0      0      0
  PPL WILD-TYPE      7      7      7      6
D49V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        3      1      2
  PPL WILD-TYPE    166    119    219
D49V3, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           166
  CLUS_2           1           119
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        3      1      2      0
  PPL WILD-TYPE    219     80    166     42
D49V4, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           219
  CLUS_2           1            80
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        1      1      4      0
  PPL WILD-TYPE     90     94    121    115
D49V5, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            90
  CLUS_2           1            94
  CLUS_3           4           121
  CLUS_4           0           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        1      1      4
  PPL WILD-TYPE     81    158    181
D49V6, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            81
  CLUS_2           1           158
  CLUS_3           4           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1      2      2      1      0
  PPL WILD-TYPE    131    107    107    132     30
D49V7, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           131
  CLUS_2           2           107
  CLUS_3           2           107
  CLUS_4           1           132
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPL MUTATED        1      0      0      1      2      2      0
  PPL WILD-TYPE    133     71     36     65     89     39     74
D49V8, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           133
  CLUS_2           0            71
  CLUS_3           0            36
  CLUS_4           1            65
  CLUS_5           2            89
  CLUS_6           2            39
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      3      3      0
  PPL WILD-TYPE    136    104    180     83
D49V9, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0           136
  CLUS_2           3           104
  CLUS_3           3           180
  CLUS_4           0            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        2      2      2
  PPL WILD-TYPE    220    182    101
D49V10, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2           220
  CLUS_2           2           182
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        1      4      1
  PPL WILD-TYPE    183    158    158
D49V11, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           183
  CLUS_2           4           158
  CLUS_3           1           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        1      3      2      0
  PPL WILD-TYPE     89    135    186     89
D49V12, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            89
  CLUS_2           3           135
  CLUS_3           2           186
  CLUS_4           0            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = PTPN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        0      0      1
  PTPN11 WILD-TYPE      9     10      7
D50V1, multiclass
[1] "Remove cluster labels:" "PTPN11 MUTATED"        
clus
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      0      0      0
  PTPN11 WILD-TYPE      6      7      7      6
D50V2, multiclass
[1] "Remove cluster labels:" "PTPN11 MUTATED"        
clus
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        2      3      2
  PTPN11 WILD-TYPE    167    117    219
D50V3, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              3              117
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      4      1      1
  PTPN11 WILD-TYPE    221     77    167     41
D50V4, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              4               77
  CLUS_3              1              167
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      2      2      0
  PTPN11 WILD-TYPE     90     93    123    115
D50V5, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              2               93
  CLUS_3              2              123
  CLUS_4              0              115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        1      1      3
  PTPN11 WILD-TYPE     81    158    182
D50V6, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               81
  CLUS_2              1              158
  CLUS_3              3              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        1      5      0      1      0
  PTPN11 WILD-TYPE    131    104    109    132     30
D50V7, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              5              104
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN11 MUTATED        1      3      0      2      0      0      1
  PTPN11 WILD-TYPE    133     68     36     64     91     41     73
D50V8, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              3               68
  CLUS_3              0               36
  CLUS_4              2               64
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        3      3      1      0
  PTPN11 WILD-TYPE    133    104    182     83
D50V9, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              3              104
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        1      1      5
  PTPN11 WILD-TYPE    221    183     98
D50V10, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              1              183
  CLUS_3              5               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        6      0      1
  PTPN11 WILD-TYPE    178    162    158
D50V11, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              6              178
  CLUS_2              0              162
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      0      1      5
  PTPN11 WILD-TYPE     89    138    187     84
D50V12, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0              138
  CLUS_3              1              187
  CLUS_4              5               84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = RET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        0      0      0
  RET WILD-TYPE      9     10      8
D51V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        0      0      0      0
  RET WILD-TYPE      7      7      7      6
D51V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        2      3      2
  RET WILD-TYPE    167    117    219
D51V3, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           167
  CLUS_2           3           117
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      3      2      0
  RET WILD-TYPE    220     78    166     42
D51V4, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           220
  CLUS_2           3            78
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        0      2      1      1
  RET WILD-TYPE     91     93    124    114
D51V5, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           0            91
  CLUS_2           2            93
  CLUS_3           1           124
  CLUS_4           1           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        0      2      2
  RET WILD-TYPE     82    157    183
D51V6, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           0            82
  CLUS_2           2           157
  CLUS_3           2           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RET MUTATED        1      3      0      3      0
  RET WILD-TYPE    131    106    109    130     30
D51V7, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           131
  CLUS_2           3           106
  CLUS_3           0           109
  CLUS_4           3           130
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RET MUTATED        1      2      1      1      0      1      1
  RET WILD-TYPE    133     69     35     65     91     40     73
D51V8, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           133
  CLUS_2           2            69
  CLUS_3           1            35
  CLUS_4           1            65
  CLUS_5           0            91
  CLUS_6           1            40
  CLUS_7           1            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      1      4      0
  RET WILD-TYPE    134    106    179     83
D51V9, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           134
  CLUS_2           1           106
  CLUS_3           4           179
  CLUS_4           0            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        1      3      3
  RET WILD-TYPE    221    181    100
D51V10, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           221
  CLUS_2           3           181
  CLUS_3           3           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        3      0      4
  RET WILD-TYPE    181    162    155
D51V11, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           3           181
  CLUS_2           0           162
  CLUS_3           4           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        1      0      4      2
  RET WILD-TYPE     89    138    184     87
D51V12, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1            89
  CLUS_2           0           138
  CLUS_3           4           184
  CLUS_4           2            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = ANKRD36 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        0      1      0
  ANKRD36 WILD-TYPE      9      9      8
D52V1, multiclass
[1] "Remove cluster labels:" "ANKRD36 MUTATED"       
clus
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5144        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5311 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        0      1      0      0
  ANKRD36 WILD-TYPE      7      6      7      6
D52V2, multiclass
[1] "Remove cluster labels:" "ANKRD36 MUTATED"       
clus
  ANKRD36 MUTATED ANKRD36 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-DH-5144        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5311 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"ANKRD36 WILD-TYPE" "ANKRD36 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        5      2      0
  ANKRD36 WILD-TYPE    164    118    221
D52V3, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               5               164
  CLUS_2               2               118
  CLUS_3               0               221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        6      1      0      0
  ANKRD36 WILD-TYPE    216     80    168     42
D52V4, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               6               216
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        2      2      2      0
  ANKRD36 WILD-TYPE     89     93    123    115
D52V5, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               2                89
  CLUS_2               2                93
  CLUS_3               2               123
  CLUS_4               0               115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        3      1      2
  ANKRD36 WILD-TYPE     79    158    183
D52V6, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3                79
  CLUS_2               1               158
  CLUS_3               2               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD36 MUTATED        3      2      0      2      0
  ANKRD36 WILD-TYPE    129    107    109    131     30
D52V7, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3               129
  CLUS_2               2               107
  CLUS_3               0               109
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD36 MUTATED        3      1      0      2      0      1      0
  ANKRD36 WILD-TYPE    131     70     36     64     91     40     74
D52V8, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3               131
  CLUS_2               1                70
  CLUS_3               0                36
  CLUS_4               2                64
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        1      1      3      2
  ANKRD36 WILD-TYPE    135    106    180     81
D52V9, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               1               106
  CLUS_3               3               180
  CLUS_4               2                81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        3      3      1
  ANKRD36 WILD-TYPE    219    181    102
D52V10, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               3               219
  CLUS_2               3               181
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD36 MUTATED        2      3      2
  ANKRD36 WILD-TYPE    182    159    157
D52V11, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               3               159
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD36 MUTATED        1      3      2      1
  ANKRD36 WILD-TYPE     89    135    186     88
D52V12, multiclass
        clus
vv       ANKRD36 MUTATED ANKRD36 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               3               135
  CLUS_3               2               186
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = NEU2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        0      0      0
  NEU2 WILD-TYPE      9     10      8
D53V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      0      0      0
  NEU2 WILD-TYPE      7      7      7      6
D53V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        2      2      1
  NEU2 WILD-TYPE    167    118    220
D53V3, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        3      1      1      0
  NEU2 WILD-TYPE    219     80    167     42
D53V4, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        1      2      1      1
  NEU2 WILD-TYPE     90     93    124    114
D53V5, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            2             93
  CLUS_3            1            124
  CLUS_4            1            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        1      2      2
  NEU2 WILD-TYPE     81    157    183
D53V6, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1             81
  CLUS_2            2            157
  CLUS_3            2            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEU2 MUTATED        3      0      1      0      1
  NEU2 WILD-TYPE    129    109    108    133     29
D53V7, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            129
  CLUS_2            0            109
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEU2 MUTATED        3      1      0      0      1      0      0
  NEU2 WILD-TYPE    131     70     36     66     90     41     74
D53V8, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            131
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      1      2      2
  NEU2 WILD-TYPE    136    106    181     81
D53V9, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            2            181
  CLUS_4            2             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        2      2      1
  NEU2 WILD-TYPE    220    182    102
D53V10, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2            182
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        1      1      3
  NEU2 WILD-TYPE    183    161    156
D53V11, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      1      3      1
  NEU2 WILD-TYPE     90    137    185     88
D53V12, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = PRX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        0      0      0
  PRX WILD-TYPE      9     10      8
D54V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        0      0      0      0
  PRX WILD-TYPE      7      7      7      6
D54V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        3      5      2
  PRX WILD-TYPE    166    115    219
D54V3, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           3           166
  CLUS_2           5           115
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        2      5      2      1
  PRX WILD-TYPE    220     76    166     41
D54V4, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2           220
  CLUS_2           5            76
  CLUS_3           2           166
  CLUS_4           1            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        2      2      2      4
  PRX WILD-TYPE     89     93    123    111
D54V5, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2            89
  CLUS_2           2            93
  CLUS_3           2           123
  CLUS_4           4           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        1      4      5
  PRX WILD-TYPE     81    155    180
D54V6, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1            81
  CLUS_2           4           155
  CLUS_3           5           180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRX MUTATED        1      4      1      3      1
  PRX WILD-TYPE    131    105    108    130     29
D54V7, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           131
  CLUS_2           4           105
  CLUS_3           1           108
  CLUS_4           3           130
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRX MUTATED        1      4      0      2      0      2      1
  PRX WILD-TYPE    133     67     36     64     91     39     73
D54V8, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           133
  CLUS_2           4            67
  CLUS_3           0            36
  CLUS_4           2            64
  CLUS_5           0            91
  CLUS_6           2            39
  CLUS_7           1            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        1      3      5      1
  PRX WILD-TYPE    135    104    178     82
D54V9, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           135
  CLUS_2           3           104
  CLUS_3           5           178
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        1      2      7
  PRX WILD-TYPE    221    182     96
D54V10, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           221
  CLUS_2           2           182
  CLUS_3           7            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        2      2      6
  PRX WILD-TYPE    182    160    153
D54V11, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2           182
  CLUS_2           2           160
  CLUS_3           6           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        1      1      3      5
  PRX WILD-TYPE     89    137    185     84
D54V12, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1            89
  CLUS_2           1           137
  CLUS_3           3           185
  CLUS_4           5            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = RBBP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      0      0
  RBBP6 WILD-TYPE      9     10      8
D55V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      0      0      0
  RBBP6 WILD-TYPE      7      7      7      6
D55V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        1      1      4
  RBBP6 WILD-TYPE    168    119    217
D55V3, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        1      1      4      0
  RBBP6 WILD-TYPE    221     80    164     42
D55V4, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             4             164
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        1      1      2      2
  RBBP6 WILD-TYPE     90     94    123    113
D55V5, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             1              94
  CLUS_3             2             123
  CLUS_4             2             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      5      1
  RBBP6 WILD-TYPE     82    154    184
D55V6, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0              82
  CLUS_2             5             154
  CLUS_3             1             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP6 MUTATED        0      2      4      0      0
  RBBP6 WILD-TYPE    132    107    105    133     30
D55V7, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             4             105
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBBP6 MUTATED        0      0      0      0      4      2      0
  RBBP6 WILD-TYPE    134     71     36     66     87     39     74
D55V8, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             4              87
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      1      3      2
  RBBP6 WILD-TYPE    136    106    180     81
D55V9, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             3             180
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        3      0      3
  RBBP6 WILD-TYPE    219    184    100
D55V10, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0             184
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      4      2
  RBBP6 WILD-TYPE    184    158    157
D55V11, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             4             158
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      4      1      1
  RBBP6 WILD-TYPE     90    134    187     88
D55V12, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             4             134
  CLUS_3             1             187
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = CIB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      0      0
  CIB1 WILD-TYPE      9     10      8
D56V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      0      0      0
  CIB1 WILD-TYPE      7      7      7      6
D56V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        2      1      1
  CIB1 WILD-TYPE    167    119    220
D56V3, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        2      0      2      0
  CIB1 WILD-TYPE    220     81    166     42
D56V4, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            0             81
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      2      1      1
  CIB1 WILD-TYPE     91     93    124    114
D56V5, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             91
  CLUS_2            2             93
  CLUS_3            1            124
  CLUS_4            1            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      1      3
  CIB1 WILD-TYPE     82    158    182
D56V6, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             82
  CLUS_2            1            158
  CLUS_3            3            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB1 MUTATED        0      1      2      1      0
  CIB1 WILD-TYPE    132    108    107    132     30
D56V7, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            132
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIB1 MUTATED        0      0      1      0      1      1      1
  CIB1 WILD-TYPE    134     71     35     66     90     40     73
D56V8, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      1      1      2
  CIB1 WILD-TYPE    136    106    182     81
D56V9, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            1            182
  CLUS_4            2             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      4      0
  CIB1 WILD-TYPE    222    180    103
D56V10, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            222
  CLUS_2            4            180
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      3      1
  CIB1 WILD-TYPE    184    159    158
D56V11, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            3            159
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      3      1      0
  CIB1 WILD-TYPE     90    135    187     89
D56V12, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            3            135
  CLUS_3            1            187
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DDX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      0      0
  DDX5 WILD-TYPE      8     10      8
D57V1, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5394 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      1      0      0
  DDX5 WILD-TYPE      7      6      7      6
D57V2, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5394 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        2      1      2
  DDX5 WILD-TYPE    167    119    219
D57V3, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        2      1      2      0
  DDX5 WILD-TYPE    220     80    166     42
D57V4, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        1      1      2      1
  DDX5 WILD-TYPE     90     94    123    114
D57V5, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            2            123
  CLUS_4            1            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        0      3      2
  DDX5 WILD-TYPE     82    156    183
D57V6, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0             82
  CLUS_2            3            156
  CLUS_3            2            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX5 MUTATED        2      1      2      0      0
  DDX5 WILD-TYPE    130    108    107    133     30
D57V7, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX5 MUTATED        2      0      1      0      1      1      0
  DDX5 WILD-TYPE    132     71     35     66     90     40     74
D57V8, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      2      3      0
  DDX5 WILD-TYPE    136    105    180     83
D57V9, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      3      1
  DDX5 WILD-TYPE    221    181    102
D57V10, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            3            181
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        0      1      4
  DDX5 WILD-TYPE    184    161    155
D57V11, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            1            161
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      1      4      0
  DDX5 WILD-TYPE     90    137    184     89
D57V12, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = NAP1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        0      0      0
  NAP1L2 WILD-TYPE      9     10      8
D58V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        0      0      0      0
  NAP1L2 WILD-TYPE      7      7      7      6
D58V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      0      2
  NAP1L2 WILD-TYPE    167    120    219
D58V3, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              0              120
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        2      0      2      0
  NAP1L2 WILD-TYPE    220     81    166     42
D58V4, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              0               81
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      0      1      1
  NAP1L2 WILD-TYPE     90     95    124    114
D58V5, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              0               95
  CLUS_3              1              124
  CLUS_4              1              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      1      0
  NAP1L2 WILD-TYPE     80    158    185
D58V6, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2               80
  CLUS_2              1              158
  CLUS_3              0              185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        2      0      2      0      0
  NAP1L2 WILD-TYPE    130    109    107    133     30
D58V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              0              109
  CLUS_3              2              107
  CLUS_4              0              133
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L2 MUTATED        2      0      2      0      0      0      0
  NAP1L2 WILD-TYPE    132     71     34     66     91     41     74
D58V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              0               71
  CLUS_3              2               34
  CLUS_4              0               66
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      1      2      0
  NAP1L2 WILD-TYPE    135    106    181     83
D58V9, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      2      0
  NAP1L2 WILD-TYPE    220    182    103
D58V10, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2              182
  CLUS_3              0              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      1      1
  NAP1L2 WILD-TYPE    182    161    158
D58V11, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              1              161
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      1      2      0
  NAP1L2 WILD-TYPE     89    137    186     89
D58V12, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = SCN4A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      1      0
  SCN4A WILD-TYPE      9      9      8
D59V1, multiclass
[1] "Remove cluster labels:" "SCN4A MUTATED"         
clus
  SCN4A MUTATED SCN4A WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      0      1      0
  SCN4A WILD-TYPE      7      7      6      6
D59V2, multiclass
[1] "Remove cluster labels:" "SCN4A MUTATED"         
clus
  SCN4A MUTATED SCN4A WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      1      5
  SCN4A WILD-TYPE    169    119    216
D59V3, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             5             216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      1      3      1
  SCN4A WILD-TYPE    221     80    165     41
D59V4, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             3             165
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      1      2      3
  SCN4A WILD-TYPE     91     94    123    112
D59V5, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0              91
  CLUS_2             1              94
  CLUS_3             2             123
  CLUS_4             3             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        1      3      2
  SCN4A WILD-TYPE     81    156    183
D59V6, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1              81
  CLUS_2             3             156
  CLUS_3             2             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN4A MUTATED        0      1      2      3      0
  SCN4A WILD-TYPE    132    108    107    130     30
D59V7, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             2             107
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCN4A MUTATED        0      0      0      1      1      1      3
  SCN4A WILD-TYPE    134     71     36     65     90     40     71
D59V8, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             3              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      1      4      0
  SCN4A WILD-TYPE    135    106    179     83
D59V9, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             4             179
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        2      3      1
  SCN4A WILD-TYPE    220    181    102
D59V10, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             2             220
  CLUS_2             3             181
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      2      4
  SCN4A WILD-TYPE    184    160    155
D59V11, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             184
  CLUS_2             2             160
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      2      4      0
  SCN4A WILD-TYPE     90    136    184     89
D59V12, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0              90
  CLUS_2             2             136
  CLUS_3             4             184
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = AGBL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        0      0      0
  AGBL1 WILD-TYPE      9     10      8
D60V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      0      0      0
  AGBL1 WILD-TYPE      7      7      7      6
D60V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        1      3      1
  AGBL1 WILD-TYPE    168    117    220
D60V3, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        1      3      1      0
  AGBL1 WILD-TYPE    221     78    167     42
D60V4, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3              78
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      2      3      0
  AGBL1 WILD-TYPE     91     93    122    115
D60V5, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             2              93
  CLUS_3             3             122
  CLUS_4             0             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        0      0      5
  AGBL1 WILD-TYPE     82    159    180
D60V6, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              82
  CLUS_2             0             159
  CLUS_3             5             180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGBL1 MUTATED        0      4      1      0      0
  AGBL1 WILD-TYPE    132    105    108    133     30
D60V7, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             4             105
  CLUS_3             1             108
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGBL1 MUTATED        0      2      0      0      1      2      0
  AGBL1 WILD-TYPE    134     69     36     66     90     39     74
D60V8, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        2      2      0      1
  AGBL1 WILD-TYPE    134    105    183     82
D60V9, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             0             183
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        1      0      4
  AGBL1 WILD-TYPE    221    184     99
D60V10, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             0             184
  CLUS_3             4              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        4      1      0
  AGBL1 WILD-TYPE    180    161    159
D60V11, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             4             180
  CLUS_2             1             161
  CLUS_3             0             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      1      0      4
  AGBL1 WILD-TYPE     90    137    188     85
D60V12, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             0             188
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = TPX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      0      0
  TPX2 WILD-TYPE      9     10      8
D61V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      0      0      0
  TPX2 WILD-TYPE      7      7      7      6
D61V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        2      1      2
  TPX2 WILD-TYPE    167    119    219
D61V3, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        3      1      1      0
  TPX2 WILD-TYPE    219     80    167     42
D61V4, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      1      1      1
  TPX2 WILD-TYPE     91     94    124    114
D61V5, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0             91
  CLUS_2            1             94
  CLUS_3            1            124
  CLUS_4            1            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      1      2
  TPX2 WILD-TYPE     82    158    183
D61V6, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0             82
  CLUS_2            1            158
  CLUS_3            2            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPX2 MUTATED        2      1      0      2      0
  TPX2 WILD-TYPE    130    108    109    131     30
D61V7, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            0            109
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPX2 MUTATED        2      0      1      0      0      1      1
  TPX2 WILD-TYPE    132     71     35     66     91     40     73
D61V8, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      1      3      1
  TPX2 WILD-TYPE    136    106    180     82
D61V9, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      4      1
  TPX2 WILD-TYPE    222    180    102
D61V10, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0            222
  CLUS_2            4            180
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      2      3
  TPX2 WILD-TYPE    184    160    156
D61V11, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            2            160
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      1      4      0
  TPX2 WILD-TYPE     90    137    184     89
D61V12, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = KRT15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        0      0      0
  KRT15 WILD-TYPE      9     10      8
D62V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        0      0      0      0
  KRT15 WILD-TYPE      7      7      7      6
D62V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        1      3      2
  KRT15 WILD-TYPE    168    117    219
D62V3, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        3      1      2      0
  KRT15 WILD-TYPE    219     80    166     42
D62V4, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1              80
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        0      1      1      1
  KRT15 WILD-TYPE     91     94    124    114
D62V5, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             1              94
  CLUS_3             1             124
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        1      1      1
  KRT15 WILD-TYPE     81    158    184
D62V6, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1              81
  CLUS_2             1             158
  CLUS_3             1             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT15 MUTATED        0      2      1      3      0
  KRT15 WILD-TYPE    132    107    108    130     30
D62V7, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             1             108
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT15 MUTATED        0      1      0      1      2      1      1
  KRT15 WILD-TYPE    134     70     36     65     89     40     73
D62V8, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        3      0      2      1
  KRT15 WILD-TYPE    133    107    181     82
D62V9, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             0             107
  CLUS_3             2             181
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        2      3      1
  KRT15 WILD-TYPE    220    181    102
D62V10, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             3             181
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        2      2      2
  KRT15 WILD-TYPE    182    160    157
D62V11, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        1      2      2      1
  KRT15 WILD-TYPE     89    136    186     88
D62V12, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = HTR3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        0      0      0
  HTR3A WILD-TYPE      9     10      8
D63V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        0      0      0      0
  HTR3A WILD-TYPE      7      7      7      6
D63V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        1      2      4
  HTR3A WILD-TYPE    168    118    217
D63V3, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        1      3      3      0
  HTR3A WILD-TYPE    221     78    165     42
D63V4, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3              78
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        2      2      2      1
  HTR3A WILD-TYPE     89     93    123    114
D63V5, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             2              89
  CLUS_2             2              93
  CLUS_3             2             123
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        1      3      3
  HTR3A WILD-TYPE     81    156    182
D63V6, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1              81
  CLUS_2             3             156
  CLUS_3             3             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR3A MUTATED        1      3      2      1      0
  HTR3A WILD-TYPE    131    106    107    132     30
D63V7, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             131
  CLUS_2             3             106
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTR3A MUTATED        1      2      1      0      2      1      0
  HTR3A WILD-TYPE    133     69     35     66     89     40     74
D63V8, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             133
  CLUS_2             2              69
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        1      2      1      3
  HTR3A WILD-TYPE    135    105    182     80
D63V9, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             3              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        3      1      3
  HTR3A WILD-TYPE    219    183    100
D63V10, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        4      2      1
  HTR3A WILD-TYPE    180    160    158
D63V11, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             4             180
  CLUS_2             2             160
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        1      2      2      2
  HTR3A WILD-TYPE     89    136    186     87
D63V12, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = C14ORF4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        0      0      0
  C14ORF4 WILD-TYPE      9     10      8
D64V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        0      0      0      0
  C14ORF4 WILD-TYPE      7      7      7      6
D64V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        0      1      2
  C14ORF4 WILD-TYPE    169    119    219
D64V3, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               0               169
  CLUS_2               1               119
  CLUS_3               2               219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        1      1      1      0
  C14ORF4 WILD-TYPE    221     80    167     42
D64V4, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               1                80
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        0      0      0      1
  C14ORF4 WILD-TYPE     91     95    125    114
D64V5, multiclass
[1] "Remove cluster labels:" "C14ORF4 MUTATED"       
clus
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                1               425 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2        TCGA-DU-A6S3 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L        TCGA-DU-A76O 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA        TCGA-DU-A7TB 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TJ        TCGA-E1-5302 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ        TCGA-E1-A7YL 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YM        TCGA-E1-A7YN        TCGA-E1-A7YQ        TCGA-E1-A7YS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7Z3        TCGA-E1-A7Z6        TCGA-EZ-7264        TCGA-F6-A8O3 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-F6-A8O4        TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A60J        TCGA-FG-A60L        TCGA-FG-A6IZ        TCGA-FG-A6J3 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A70Y        TCGA-FG-A70Z        TCGA-FG-A710        TCGA-FG-A713 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A87N        TCGA-FG-A87Q        TCGA-HT-7467        TCGA-HT-7468 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902        TCGA-HT-8010 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013        TCGA-HT-8015 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104        TCGA-HT-8105 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109        TCGA-HT-8110 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114        TCGA-HT-8558 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5        TCGA-HT-A5R7 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HT-A614        TCGA-HT-A615 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A616        TCGA-HT-A617        TCGA-HT-A618        TCGA-HT-A619 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A74H        TCGA-HT-A74J 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A74L        TCGA-HT-A74O        TCGA-HW-7486        TCGA-HW-7487 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491        TCGA-HW-7495 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321        TCGA-HW-8322 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM        TCGA-IK-7675 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-IK-8125        TCGA-KT-A74X        TCGA-P5-A5ET        TCGA-P5-A5EU 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A72X        TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A733        TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A77W        TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A65S        TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CS        TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CX        TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X4 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6X5        TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6XC        TCGA-QH-A86X        TCGA-QH-A870        TCGA-R8-A6MK 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-R8-A6ML        TCGA-R8-A6MO        TCGA-R8-A6YH        TCGA-RY-A83X 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-RY-A83Y        TCGA-RY-A83Z        TCGA-RY-A843        TCGA-RY-A845 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6TS        TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TX 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6TY        TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U5 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6U6        TCGA-S9-A6U9        TCGA-S9-A6WD        TCGA-S9-A6WE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6WG        TCGA-S9-A6WH        TCGA-S9-A6WN        TCGA-S9-A6WP 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6WQ        TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7IZ        TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7QX        TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R4 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7R8        TCGA-TM-A7C5        TCGA-TM-A84R        TCGA-TM-A84S 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RF        TCGA-TQ-A7RG        TCGA-TQ-A7RH        TCGA-TQ-A7RK 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RN        TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RV        TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8C9        TCGA-VM-A8CA        TCGA-VM-A8CB        TCGA-VM-A8CD 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8CE        TCGA-VM-A8CH        TCGA-VV-A829        TCGA-VV-A86M 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VW-A7QS        TCGA-W9-A837        TCGA-WY-A85B        TCGA-WY-A85C 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-WY-A85D 
"C14ORF4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        0      1      0
  C14ORF4 WILD-TYPE     82    158    185
D64V6, multiclass
[1] "Remove cluster labels:" "C14ORF4 MUTATED"       
clus
  C14ORF4 MUTATED C14ORF4 WILD-TYPE 
                1               425 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2        TCGA-DU-A6S3 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L        TCGA-DU-A76O 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA        TCGA-DU-A7TB 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TJ        TCGA-E1-5302 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ        TCGA-E1-A7YL 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YM        TCGA-E1-A7YN        TCGA-E1-A7YQ        TCGA-E1-A7YS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-E1-A7Z3        TCGA-E1-A7Z6        TCGA-EZ-7264        TCGA-F6-A8O3 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-F6-A8O4        TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A60J        TCGA-FG-A60L        TCGA-FG-A6IZ        TCGA-FG-A6J3 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A70Y        TCGA-FG-A70Z        TCGA-FG-A710        TCGA-FG-A713 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-FG-A87N        TCGA-FG-A87Q        TCGA-HT-7467        TCGA-HT-7468 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902        TCGA-HT-8010 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013        TCGA-HT-8015 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104        TCGA-HT-8105 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109        TCGA-HT-8110 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114        TCGA-HT-8558 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5        TCGA-HT-A5R7 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HT-A614        TCGA-HT-A615 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A616        TCGA-HT-A617        TCGA-HT-A618        TCGA-HT-A619 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A61A        TCGA-HT-A61B        TCGA-HT-A74H        TCGA-HT-A74J 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HT-A74L        TCGA-HT-A74O        TCGA-HW-7486        TCGA-HW-7487 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491        TCGA-HW-7495 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321        TCGA-HW-8322 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM        TCGA-IK-7675 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-IK-8125        TCGA-KT-A74X        TCGA-P5-A5ET        TCGA-P5-A5EU 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A72X        TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A733        TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-P5-A77W        TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A65S        TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CS        TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6CX        TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X4 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6X5        TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-QH-A6XC        TCGA-QH-A86X        TCGA-QH-A870        TCGA-R8-A6MK 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-R8-A6ML        TCGA-R8-A6MO        TCGA-R8-A6YH        TCGA-RY-A83X 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-RY-A83Y        TCGA-RY-A83Z        TCGA-RY-A843        TCGA-RY-A845 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6TS        TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TX 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6TY        TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U5 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6U6        TCGA-S9-A6U9        TCGA-S9-A6WD        TCGA-S9-A6WE 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6WG        TCGA-S9-A6WH        TCGA-S9-A6WN        TCGA-S9-A6WP 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A6WQ        TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IY 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7IZ        TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7QX        TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R4 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-S9-A7R8        TCGA-TM-A7C5        TCGA-TM-A84R        TCGA-TM-A84S 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RF        TCGA-TQ-A7RG        TCGA-TQ-A7RH        TCGA-TQ-A7RK 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RN        TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-TQ-A7RV        TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8C9        TCGA-VM-A8CA        TCGA-VM-A8CB        TCGA-VM-A8CD 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VM-A8CE        TCGA-VM-A8CH        TCGA-VV-A829        TCGA-VV-A86M 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-VW-A7QS        TCGA-W9-A837        TCGA-WY-A85B        TCGA-WY-A85C 
"C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" "C14ORF4 WILD-TYPE" 
       TCGA-WY-A85D 
"C14ORF4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF4 MUTATED        1      1      0      1      0
  C14ORF4 WILD-TYPE    131    108    109    132     30
D64V7, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               0               109
  CLUS_4               1               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF4 MUTATED        1      1      0      0      0      0      1
  C14ORF4 WILD-TYPE    133     70     36     66     91     41     73
D64V8, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               1                70
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        1      1      1      0
  C14ORF4 WILD-TYPE    135    106    182     83
D64V9, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               1               106
  CLUS_3               1               182
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        1      1      1
  C14ORF4 WILD-TYPE    221    183    102
D64V10, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               1               183
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C14ORF4 MUTATED        2      0      1
  C14ORF4 WILD-TYPE    182    162    158
D64V11, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               0               162
  CLUS_3               1               158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF4 MUTATED        1      0      1      1
  C14ORF4 WILD-TYPE     89    138    187     88
D64V12, multiclass
        clus
vv       C14ORF4 MUTATED C14ORF4 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               1               187
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = R3HDM1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        0      0      1
  R3HDM1 WILD-TYPE      9     10      7
D65V1, multiclass
[1] "Remove cluster labels:" "R3HDM1 MUTATED"        
clus
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DH-5140 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        0      0      0      1
  R3HDM1 WILD-TYPE      7      7      7      5
D65V2, multiclass
[1] "Remove cluster labels:" "R3HDM1 MUTATED"        
clus
  R3HDM1 MUTATED R3HDM1 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DH-5140 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"R3HDM1 WILD-TYPE" "R3HDM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        2      2      3
  R3HDM1 WILD-TYPE    167    118    218
D65V3, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              2              118
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        3      2      2      0
  R3HDM1 WILD-TYPE    219     79    166     42
D65V4, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        0      0      3      2
  R3HDM1 WILD-TYPE     91     95    122    113
D65V5, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              0               95
  CLUS_3              3              122
  CLUS_4              2              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        0      2      3
  R3HDM1 WILD-TYPE     82    157    182
D65V6, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0               82
  CLUS_2              2              157
  CLUS_3              3              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM1 MUTATED        1      1      2      3      0
  R3HDM1 WILD-TYPE    131    108    107    130     30
D65V7, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              1              108
  CLUS_3              2              107
  CLUS_4              3              130
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  R3HDM1 MUTATED        1      0      0      2      2      1      1
  R3HDM1 WILD-TYPE    133     71     36     64     89     40     73
D65V8, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              2               64
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        1      1      3      2
  R3HDM1 WILD-TYPE    135    106    180     81
D65V9, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1              106
  CLUS_3              3              180
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        3      2      2
  R3HDM1 WILD-TYPE    219    182    101
D65V10, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2              182
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM1 MUTATED        0      4      3
  R3HDM1 WILD-TYPE    184    158    156
D65V11, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              0              184
  CLUS_2              4              158
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM1 MUTATED        1      3      2      1
  R3HDM1 WILD-TYPE     89    135    186     88
D65V12, multiclass
        clus
vv       R3HDM1 MUTATED R3HDM1 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              3              135
  CLUS_3              2              186
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = G6PC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        0      0      0
  G6PC WILD-TYPE      9     10      8
D66V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      0      0      0
  G6PC WILD-TYPE      7      7      7      6
D66V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      3      2
  G6PC WILD-TYPE    168    117    219
D66V3, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            168
  CLUS_2            3            117
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        1      3      2      0
  G6PC WILD-TYPE    221     78    166     42
D66V4, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            221
  CLUS_2            3             78
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        2      1      2      1
  G6PC WILD-TYPE     89     94    123    114
D66V5, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            2             89
  CLUS_2            1             94
  CLUS_3            2            123
  CLUS_4            1            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      2      3
  G6PC WILD-TYPE     81    157    182
D66V6, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1             81
  CLUS_2            2            157
  CLUS_3            3            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G6PC MUTATED        1      1      2      1      1
  G6PC WILD-TYPE    131    108    107    132     29
D66V7, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            131
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            1            132
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G6PC MUTATED        0      1      1      1      1      2      0
  G6PC WILD-TYPE    134     70     35     65     90     39     74
D66V8, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0            134
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      2      3      1
  G6PC WILD-TYPE    136    105    180     82
D66V9, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      2      3
  G6PC WILD-TYPE    221    182    100
D66V10, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      1      4
  G6PC WILD-TYPE    183    161    155
D66V11, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        1      1      2      2
  G6PC WILD-TYPE     89    137    186     87
D66V12, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            2            186
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DLC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        0      0      0
  DLC1 WILD-TYPE      9     10      8
D67V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        0      0      0      0
  DLC1 WILD-TYPE      7      7      7      6
D67V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      4      1
  DLC1 WILD-TYPE    168    116    220
D67V3, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            4            116
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        2      3      1      0
  DLC1 WILD-TYPE    220     78    167     42
D67V4, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3             78
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      1      2      0
  DLC1 WILD-TYPE     90     94    123    115
D67V5, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             90
  CLUS_2            1             94
  CLUS_3            2            123
  CLUS_4            0            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        0      2      2
  DLC1 WILD-TYPE     82    157    183
D67V6, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            0             82
  CLUS_2            2            157
  CLUS_3            2            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLC1 MUTATED        2      3      0      1      0
  DLC1 WILD-TYPE    130    106    109    132     30
D67V7, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            3            106
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLC1 MUTATED        2      2      0      0      0      1      1
  DLC1 WILD-TYPE    132     69     36     66     91     40     73
D67V8, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            2             69
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      2      2      1
  DLC1 WILD-TYPE    135    105    181     82
D67V9, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            2            105
  CLUS_3            2            181
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      2      3
  DLC1 WILD-TYPE    221    182    100
D67V10, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        3      1      2
  DLC1 WILD-TYPE    181    161    157
D67V11, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            3            181
  CLUS_2            1            161
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        0      0      4      2
  DLC1 WILD-TYPE     90    138    184     87
D67V12, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            4            184
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = SLC12A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        0      1      0
  SLC12A7 WILD-TYPE      9      9      8
D68V1, multiclass
[1] "Remove cluster labels:" "SLC12A7 MUTATED"       
clus
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5394 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        0      0      1      0
  SLC12A7 WILD-TYPE      7      7      6      6
D68V2, multiclass
[1] "Remove cluster labels:" "SLC12A7 MUTATED"       
clus
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5394 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        1      4      2
  SLC12A7 WILD-TYPE    168    116    219
D68V3, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1               168
  CLUS_2               4               116
  CLUS_3               2               219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        2      2      2      1
  SLC12A7 WILD-TYPE    220     79    166     41
D68V4, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               2                79
  CLUS_3               2               166
  CLUS_4               1                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        0      1      4      2
  SLC12A7 WILD-TYPE     91     94    121    113
D68V5, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               0                91
  CLUS_2               1                94
  CLUS_3               4               121
  CLUS_4               2               113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        0      2      5
  SLC12A7 WILD-TYPE     82    157    180
D68V6, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               0                82
  CLUS_2               2               157
  CLUS_3               5               180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        2      2      2      1      0
  SLC12A7 WILD-TYPE    130    107    107    132     30
D68V7, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               130
  CLUS_2               2               107
  CLUS_3               2               107
  CLUS_4               1               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC12A7 MUTATED        2      1      1      0      1      1      1
  SLC12A7 WILD-TYPE    132     70     35     66     90     40     73
D68V8, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               132
  CLUS_2               1                70
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        3      1      2      1
  SLC12A7 WILD-TYPE    133    106    181     82
D68V9, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               133
  CLUS_2               1               106
  CLUS_3               2               181
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        3      2      2
  SLC12A7 WILD-TYPE    219    182    101
D68V10, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               219
  CLUS_2               2               182
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        2      3      2
  SLC12A7 WILD-TYPE    182    159    157
D68V11, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               3               159
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        1      2      3      1
  SLC12A7 WILD-TYPE     89    136    185     88
D68V12, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               2               136
  CLUS_3               3               185
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      0      0
  SMARCB1 WILD-TYPE      9     10      8
D69V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      0      0      0
  SMARCB1 WILD-TYPE      7      7      7      6
D69V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        2      1      1
  SMARCB1 WILD-TYPE    167    119    220
D69V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               167
  CLUS_2               1               119
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        2      1      1      0
  SMARCB1 WILD-TYPE    220     80    167     42
D69V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      0      3      0
  SMARCB1 WILD-TYPE     91     95    122    115
D69V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                91
  CLUS_2               0                95
  CLUS_3               3               122
  CLUS_4               0               115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      0      3
  SMARCB1 WILD-TYPE     82    159    182
D69V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                82
  CLUS_2               0               159
  CLUS_3               3               182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        1      1      0      2      0
  SMARCB1 WILD-TYPE    131    108    109    131     30
D69V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               0               109
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCB1 MUTATED        2      0      0      0      0      1      1
  SMARCB1 WILD-TYPE    132     71     36     66     91     40     73
D69V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               132
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      1      3      0
  SMARCB1 WILD-TYPE    136    106    180     83
D69V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               1               106
  CLUS_3               3               180
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        1      2      1
  SMARCB1 WILD-TYPE    221    182    102
D69V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      1      3
  SMARCB1 WILD-TYPE    184    161    156
D69V11, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0               184
  CLUS_2               1               161
  CLUS_3               3               156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      0      3      0
  SMARCB1 WILD-TYPE     89    138    185     89
D69V12, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               3               185
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = WRN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      0      0
  WRN WILD-TYPE      9     10      8
D70V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      0      0      0
  WRN WILD-TYPE      7      7      7      6
D70V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      4
  WRN WILD-TYPE    169    119    217
D70V3, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           169
  CLUS_2           1           119
  CLUS_3           4           217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      4      0
  WRN WILD-TYPE    222     80    164     42
D70V4, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           222
  CLUS_2           1            80
  CLUS_3           4           164
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      2      1
  WRN WILD-TYPE     91     94    123    114
D70V5, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            91
  CLUS_2           1            94
  CLUS_3           2           123
  CLUS_4           1           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      3
  WRN WILD-TYPE     82    158    182
D70V6, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            82
  CLUS_2           1           158
  CLUS_3           3           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        0      1      4      0      0
  WRN WILD-TYPE    132    108    105    133     30
D70V7, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           132
  CLUS_2           1           108
  CLUS_3           4           105
  CLUS_4           0           133
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WRN MUTATED        0      0      2      0      2      1      0
  WRN WILD-TYPE    134     71     34     66     89     40     74
D70V8, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           134
  CLUS_2           0            71
  CLUS_3           2            34
  CLUS_4           0            66
  CLUS_5           2            89
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      1      3
  WRN WILD-TYPE    136    106    182     80
D70V9, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           136
  CLUS_2           1           106
  CLUS_3           1           182
  CLUS_4           3            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      2      1
  WRN WILD-TYPE    220    182    102
D70V10, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2           220
  CLUS_2           2           182
  CLUS_3           1           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      4      1
  WRN WILD-TYPE    184    158    158
D70V11, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           184
  CLUS_2           4           158
  CLUS_3           1           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      3      2      0
  WRN WILD-TYPE     90    135    186     89
D70V12, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            90
  CLUS_2           3           135
  CLUS_3           2           186
  CLUS_4           0            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = LAMA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        0      0      0
  LAMA4 WILD-TYPE      9     10      8
D71V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        0      0      0      0
  LAMA4 WILD-TYPE      7      7      7      6
D71V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        1      2      1
  LAMA4 WILD-TYPE    168    118    220
D71V3, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        1      2      1      0
  LAMA4 WILD-TYPE    221     79    167     42
D71V4, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        1      1      1      1
  LAMA4 WILD-TYPE     90     94    124    114
D71V5, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1              90
  CLUS_2             1              94
  CLUS_3             1             124
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        2      1      1
  LAMA4 WILD-TYPE     80    158    184
D71V6, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2              80
  CLUS_2             1             158
  CLUS_3             1             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAMA4 MUTATED        0      2      0      1      1
  LAMA4 WILD-TYPE    132    107    109    132     29
D71V7, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAMA4 MUTATED        1      2      0      0      0      0      1
  LAMA4 WILD-TYPE    133     69     36     66     91     41     73
D71V8, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        2      0      2      0
  LAMA4 WILD-TYPE    134    107    181     83
D71V9, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             0             107
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        2      1      1
  LAMA4 WILD-TYPE    220    183    102
D71V10, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMA4 MUTATED        2      0      2
  LAMA4 WILD-TYPE    182    162    157
D71V11, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             0             162
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMA4 MUTATED        1      1      1      1
  LAMA4 WILD-TYPE     89    137    187     88
D71V12, multiclass
        clus
vv       LAMA4 MUTATED LAMA4 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             1             187
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = MAST2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST2 MUTATED        1      0      0
  MAST2 WILD-TYPE      8     10      8
D72V1, multiclass
[1] "Remove cluster labels:" "MAST2 MUTATED"         
clus
  MAST2 MUTATED MAST2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5143      TCGA-DH-5144 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST2 MUTATED        0      1      0      0
  MAST2 WILD-TYPE      7      6      7      6
D72V2, multiclass
[1] "Remove cluster labels:" "MAST2 MUTATED"         
clus
  MAST2 MUTATED MAST2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5143      TCGA-DH-5144 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"MAST2 WILD-TYPE" "MAST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST2 MUTATED        1      2      2
  MAST2 WILD-TYPE    168    118    219
D72V3, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST2 MUTATED        2      2      1      0
  MAST2 WILD-TYPE    220     79    167     42
D72V4, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST2 MUTATED        0      2      2      1
  MAST2 WILD-TYPE     91     93    123    114
D72V5, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             2              93
  CLUS_3             2             123
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST2 MUTATED        0      1      4
  MAST2 WILD-TYPE     82    158    181
D72V6, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             0              82
  CLUS_2             1             158
  CLUS_3             4             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAST2 MUTATED        2      2      0      1      0
  MAST2 WILD-TYPE    130    107    109    132     30
D72V7, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAST2 MUTATED        1      1      0      0      0      2      1
  MAST2 WILD-TYPE    133     70     36     66     91     39     73
D72V8, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             2              39
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST2 MUTATED        0      4      1      0
  MAST2 WILD-TYPE    136    103    182     83
D72V9, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             4             103
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST2 MUTATED        2      1      2
  MAST2 WILD-TYPE    220    183    101
D72V10, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1             183
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST2 MUTATED        2      1      2
  MAST2 WILD-TYPE    182    161    157
D72V11, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST2 MUTATED        0      1      3      1
  MAST2 WILD-TYPE     90    137    185     88
D72V12, multiclass
        clus
vv       MAST2 MUTATED MAST2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             3             185
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = ZMYM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        0      0      0
  ZMYM2 WILD-TYPE      9     10      8
D73V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      0      0      0
  ZMYM2 WILD-TYPE      7      7      7      6
D73V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      2      4
  ZMYM2 WILD-TYPE    168    118    217
D73V3, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        2      2      3      0
  ZMYM2 WILD-TYPE    220     79    165     42
D73V4, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      1      3      1
  ZMYM2 WILD-TYPE     91     94    122    114
D73V5, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             1              94
  CLUS_3             3             122
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        0      1      4
  ZMYM2 WILD-TYPE     82    158    181
D73V6, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              82
  CLUS_2             1             158
  CLUS_3             4             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM2 MUTATED        2      2      0      3      0
  ZMYM2 WILD-TYPE    130    107    109    130     30
D73V7, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYM2 MUTATED        2      1      0      0      0      1      3
  ZMYM2 WILD-TYPE    132     70     36     66     91     40     71
D73V8, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             3              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      3      4      0
  ZMYM2 WILD-TYPE    136    104    179     83
D73V9, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             3             104
  CLUS_3             4             179
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      4      2
  ZMYM2 WILD-TYPE    221    180    101
D73V10, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             4             180
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      2      4
  ZMYM2 WILD-TYPE    183    160    155
D73V11, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      1      5      1
  ZMYM2 WILD-TYPE     90    137    183     88
D73V12, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             5             183
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = SLFN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        0      0      0
  SLFN11 WILD-TYPE      9     10      8
D74V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        0      0      0      0
  SLFN11 WILD-TYPE      7      7      7      6
D74V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        2      1      1
  SLFN11 WILD-TYPE    167    119    220
D74V3, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              1              119
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        2      1      1      0
  SLFN11 WILD-TYPE    220     80    167     42
D74V4, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1               80
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        1      1      1      1
  SLFN11 WILD-TYPE     90     94    124    114
D74V5, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1               90
  CLUS_2              1               94
  CLUS_3              1              124
  CLUS_4              1              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        0      3      1
  SLFN11 WILD-TYPE     82    156    184
D74V6, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0               82
  CLUS_2              3              156
  CLUS_3              1              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN11 MUTATED        0      1      1      1      1
  SLFN11 WILD-TYPE    132    108    108    132     29
D74V7, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLFN11 MUTATED        1      0      0      1      1      1      0
  SLFN11 WILD-TYPE    133     71     36     65     90     40     74
D74V8, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        1      2      1      0
  SLFN11 WILD-TYPE    135    105    182     83
D74V9, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        3      0      1
  SLFN11 WILD-TYPE    219    184    102
D74V10, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              0              184
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        2      0      2
  SLFN11 WILD-TYPE    182    162    157
D74V11, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              0              162
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        0      2      2      0
  SLFN11 WILD-TYPE     90    136    186     89
D74V12, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = C4BPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        0      0      0
  C4BPA WILD-TYPE      9     10      8
D75V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        0      0      0      0
  C4BPA WILD-TYPE      7      7      7      6
D75V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        1      3      2
  C4BPA WILD-TYPE    168    117    219
D75V3, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        2      2      1      1
  C4BPA WILD-TYPE    220     79    167     41
D75V4, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        0      0      3      1
  C4BPA WILD-TYPE     91     95    122    114
D75V5, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             0              91
  CLUS_2             0              95
  CLUS_3             3             122
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        0      1      3
  C4BPA WILD-TYPE     82    158    182
D75V6, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             0              82
  CLUS_2             1             158
  CLUS_3             3             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4BPA MUTATED        2      2      1      1      0
  C4BPA WILD-TYPE    130    107    108    132     30
D75V7, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             130
  CLUS_2             2             107
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C4BPA MUTATED        1      1      0      1      1      2      0
  C4BPA WILD-TYPE    133     70     36     65     90     39     74
D75V8, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        2      2      1      1
  C4BPA WILD-TYPE    134    105    182     82
D75V9, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        3      1      2
  C4BPA WILD-TYPE    219    183    101
D75V10, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        2      2      2
  C4BPA WILD-TYPE    182    160    157
D75V11, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        1      2      2      1
  C4BPA WILD-TYPE     89    136    186     88
D75V12, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = TMEM184A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      0      0
  TMEM184A WILD-TYPE      9     10      8
D76V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      0      0      0
  TMEM184A WILD-TYPE      7      7      7      6
D76V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      1      2
  TMEM184A WILD-TYPE    169    119    219
D76V3, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                169
  CLUS_2                1                119
  CLUS_3                2                219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      1      2      0
  TMEM184A WILD-TYPE    222     80    166     42
D76V4, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                222
  CLUS_2                1                 80
  CLUS_3                2                166
  CLUS_4                0                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        1      0      1      1
  TMEM184A WILD-TYPE     90     95    124    114
D76V5, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                 90
  CLUS_2                0                 95
  CLUS_3                1                124
  CLUS_4                1                114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      1      2
  TMEM184A WILD-TYPE     82    158    183
D76V6, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 82
  CLUS_2                1                158
  CLUS_3                2                183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        0      1      0      2      0
  TMEM184A WILD-TYPE    132    108    109    131     30
D76V7, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                132
  CLUS_2                1                108
  CLUS_3                0                109
  CLUS_4                2                131
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM184A MUTATED        0      1      0      0      0      0      2
  TMEM184A WILD-TYPE    134     70     36     66     91     41     72
D76V8, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                134
  CLUS_2                1                 70
  CLUS_3                0                 36
  CLUS_4                0                 66
  CLUS_5                0                 91
  CLUS_6                0                 41
  CLUS_7                2                 72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        1      0      2      0
  TMEM184A WILD-TYPE    135    107    181     83
D76V9, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                135
  CLUS_2                0                107
  CLUS_3                2                181
  CLUS_4                0                 83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      2      1
  TMEM184A WILD-TYPE    222    182    102
D76V10, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                222
  CLUS_2                2                182
  CLUS_3                1                102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        1      0      2
  TMEM184A WILD-TYPE    183    162    157
D76V11, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                183
  CLUS_2                0                162
  CLUS_3                2                157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      0      2      1
  TMEM184A WILD-TYPE     90    138    186     88
D76V12, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 90
  CLUS_2                0                138
  CLUS_3                2                186
  CLUS_4                1                 88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = KTELC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        0      0      0
  KTELC1 WILD-TYPE      9     10      8
D77V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      0      0      0
  KTELC1 WILD-TYPE      7      7      7      6
D77V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        2      1      2
  KTELC1 WILD-TYPE    167    119    219
D77V3, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              1              119
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        4      0      1      0
  KTELC1 WILD-TYPE    218     81    167     42
D77V4, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              0               81
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      0      3      1
  KTELC1 WILD-TYPE     91     95    122    114
D77V5, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0               91
  CLUS_2              0               95
  CLUS_3              3              122
  CLUS_4              1              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        0      1      3
  KTELC1 WILD-TYPE     82    158    182
D77V6, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0               82
  CLUS_2              1              158
  CLUS_3              3              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KTELC1 MUTATED        2      1      1      1      0
  KTELC1 WILD-TYPE    130    108    108    132     30
D77V7, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              1              108
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KTELC1 MUTATED        2      0      0      1      1      1      0
  KTELC1 WILD-TYPE    132     71     36     65     90     40     74
D77V8, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      3      1      1
  KTELC1 WILD-TYPE    136    104    182     82
D77V9, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0              136
  CLUS_2              3              104
  CLUS_3              1              182
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        1      0      4
  KTELC1 WILD-TYPE    221    184     99
D77V10, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              0              184
  CLUS_3              4               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KTELC1 MUTATED        2      2      1
  KTELC1 WILD-TYPE    182    160    158
D77V11, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              2              160
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTELC1 MUTATED        0      4      1      0
  KTELC1 WILD-TYPE     90    134    187     89
D77V12, multiclass
        clus
vv       KTELC1 MUTATED KTELC1 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              4              134
  CLUS_3              1              187
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = ASXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      0      0
  ASXL2 WILD-TYPE      9     10      8
D78V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      0      0
  ASXL2 WILD-TYPE      7      7      7      6
D78V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      1      2
  ASXL2 WILD-TYPE    169    119    219
D78V3, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      2      0
  ASXL2 WILD-TYPE    222     80    166     42
D78V4, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1              80
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      2      1
  ASXL2 WILD-TYPE     91     95    123    114
D78V5, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              91
  CLUS_2             0              95
  CLUS_3             2             123
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      2      1
  ASXL2 WILD-TYPE     82    157    184
D78V6, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              82
  CLUS_2             2             157
  CLUS_3             1             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        0      1      1      1      0
  ASXL2 WILD-TYPE    132    108    108    132     30
D78V7, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASXL2 MUTATED        0      0      0      0      1      1      1
  ASXL2 WILD-TYPE    134     71     36     66     90     40     73
D78V8, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      1      1
  ASXL2 WILD-TYPE    136    106    182     82
D78V9, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        1      1      1
  ASXL2 WILD-TYPE    221    183    102
D78V10, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      1      2
  ASXL2 WILD-TYPE    184    161    157
D78V11, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      2      0
  ASXL2 WILD-TYPE     90    137    186     89
D78V12, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = CCDC135 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        0      0      0
  CCDC135 WILD-TYPE      9     10      8
D79V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        0      0      0      0
  CCDC135 WILD-TYPE      7      7      7      6
D79V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        3      2      2
  CCDC135 WILD-TYPE    166    118    219
D79V3, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3               166
  CLUS_2               2               118
  CLUS_3               2               219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        3      1      3      0
  CCDC135 WILD-TYPE    219     80    165     42
D79V4, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3               219
  CLUS_2               1                80
  CLUS_3               3               165
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        1      1      3      0
  CCDC135 WILD-TYPE     90     94    122    115
D79V5, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1                90
  CLUS_2               1                94
  CLUS_3               3               122
  CLUS_4               0               115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        2      1      2
  CCDC135 WILD-TYPE     80    158    183
D79V6, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               2                80
  CLUS_2               1               158
  CLUS_3               2               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC135 MUTATED        0      2      2      3      0
  CCDC135 WILD-TYPE    132    107    107    130     30
D79V7, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               0               132
  CLUS_2               2               107
  CLUS_3               2               107
  CLUS_4               3               130
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC135 MUTATED        0      0      0      2      3      2      0
  CCDC135 WILD-TYPE    134     71     36     64     88     39     74
D79V8, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               0               134
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               2                64
  CLUS_5               3                88
  CLUS_6               2                39
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        1      2      2      2
  CCDC135 WILD-TYPE    135    105    181     81
D79V9, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               2               105
  CLUS_3               2               181
  CLUS_4               2                81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        3      3      1
  CCDC135 WILD-TYPE    219    181    102
D79V10, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               3               219
  CLUS_2               3               181
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC135 MUTATED        2      2      3
  CCDC135 WILD-TYPE    182    160    156
D79V11, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               2               160
  CLUS_3               3               156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC135 MUTATED        1      2      4      0
  CCDC135 WILD-TYPE     89    136    184     89
D79V12, multiclass
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               2               136
  CLUS_3               4               184
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = SLC25A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        0      0      1
  SLC25A5 WILD-TYPE      9     10      7
D80V1, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      0      0
  SLC25A5 WILD-TYPE      6      7      7      6
D80V2, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      2      1
  SLC25A5 WILD-TYPE    168    118    220
D80V3, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               168
  CLUS_2               2               118
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        2      1      0      1
  SLC25A5 WILD-TYPE    220     80    168     41
D80V4, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               1                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        0      0      1      1
  SLC25A5 WILD-TYPE     91     95    124    114
D80V5, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                2               424 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2        TCGA-DU-A6S3 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L        TCGA-DU-A76O 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA        TCGA-DU-A7TB 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TJ        TCGA-E1-5302 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ        TCGA-E1-A7YL 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YM        TCGA-E1-A7YN        TCGA-E1-A7YQ        TCGA-E1-A7YS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7Z3        TCGA-EZ-7264        TCGA-F6-A8O3        TCGA-F6-A8O4 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A60L        TCGA-FG-A6IZ        TCGA-FG-A6J3        TCGA-FG-A70Y 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A70Z        TCGA-FG-A710        TCGA-FG-A87N        TCGA-FG-A87Q 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7690        TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7694        TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7856        TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7873        TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7879        TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7884        TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8012        TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8019        TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8107        TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8113        TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A4DV        TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A5RB        TCGA-HT-A614        TCGA-HT-A615        TCGA-HT-A616 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A617        TCGA-HT-A618        TCGA-HT-A619        TCGA-HT-A61A 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A61B        TCGA-HT-A74H        TCGA-HT-A74J        TCGA-HT-A74L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A74O        TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-7490        TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-8320        TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-A5KK        TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-KT-A74X        TCGA-P5-A5ET        TCGA-P5-A5EU        TCGA-P5-A5EV 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY        TCGA-P5-A5EZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2        TCGA-P5-A5F4 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W        TCGA-P5-A72X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731        TCGA-P5-A733 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737        TCGA-P5-A77W 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781        TCGA-QH-A65S 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X4        TCGA-QH-A6X5 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A86X        TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-R8-A6MO        TCGA-R8-A6YH        TCGA-RY-A83X        TCGA-RY-A83Y 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-RY-A83Z        TCGA-RY-A843        TCGA-RY-A845        TCGA-S9-A6TS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TX        TCGA-S9-A6TY 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U5        TCGA-S9-A6U6 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6U9        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WN        TCGA-S9-A6WP        TCGA-S9-A6WQ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IY        TCGA-S9-A7IZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7QX 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R4        TCGA-S9-A7R8 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TM-A7C5        TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TQ-A7RF 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RG        TCGA-TQ-A7RH        TCGA-TQ-A7RK        TCGA-TQ-A7RN 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RV 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8C9 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VM-A8CA        TCGA-VM-A8CB        TCGA-VM-A8CD        TCGA-VM-A8CE 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VM-A8CH        TCGA-VV-A829        TCGA-VV-A86M        TCGA-VW-A7QS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-W9-A837        TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      1      0
  SLC25A5 WILD-TYPE     81    158    185
D80V6, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                2               424 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DB-A64L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64O        TCGA-DB-A64P        TCGA-DB-A64Q        TCGA-DB-A64R 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64S        TCGA-DB-A64U        TCGA-DB-A64V        TCGA-DB-A64W 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A64X        TCGA-DB-A75K        TCGA-DB-A75L        TCGA-DB-A75M 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-A75O        TCGA-DB-A75P        TCGA-DH-5140        TCGA-DH-5141 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DH-A66B 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-A66D        TCGA-DH-A66F        TCGA-DH-A66G        TCGA-DH-A7US 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-DU-A6S2        TCGA-DU-A6S3 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A6S8        TCGA-DU-A76K        TCGA-DU-A76L        TCGA-DU-A76O 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A76R        TCGA-DU-A7T6        TCGA-DU-A7TA        TCGA-DU-A7TB 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DU-A7TD        TCGA-DU-A7TG        TCGA-DU-A7TJ        TCGA-E1-5302 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YH        TCGA-E1-A7YI        TCGA-E1-A7YJ        TCGA-E1-A7YL 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YM        TCGA-E1-A7YN        TCGA-E1-A7YQ        TCGA-E1-A7YS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7YV        TCGA-E1-A7YW        TCGA-E1-A7YY        TCGA-E1-A7Z2 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-A7Z3        TCGA-EZ-7264        TCGA-F6-A8O3        TCGA-F6-A8O4 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A60L        TCGA-FG-A6IZ        TCGA-FG-A6J3        TCGA-FG-A70Y 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-FG-A70Z        TCGA-FG-A710        TCGA-FG-A87N        TCGA-FG-A87Q 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7690        TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7694        TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7856        TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7873        TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7879        TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-7884        TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8012        TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8019        TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8107        TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-8113        TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A4DV        TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A5RB        TCGA-HT-A614        TCGA-HT-A615        TCGA-HT-A616 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A617        TCGA-HT-A618        TCGA-HT-A619        TCGA-HT-A61A 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A61B        TCGA-HT-A74H        TCGA-HT-A74J        TCGA-HT-A74L 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HT-A74O        TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-7490        TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-8320        TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-HW-A5KK        TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-KT-A74X        TCGA-P5-A5ET        TCGA-P5-A5EU        TCGA-P5-A5EV 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY        TCGA-P5-A5EZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2        TCGA-P5-A5F4 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A5F6        TCGA-P5-A72U        TCGA-P5-A72W        TCGA-P5-A72X 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A72Z        TCGA-P5-A730        TCGA-P5-A731        TCGA-P5-A733 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A735        TCGA-P5-A736        TCGA-P5-A737        TCGA-P5-A77W 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-P5-A77X        TCGA-P5-A780        TCGA-P5-A781        TCGA-QH-A65S 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A65V        TCGA-QH-A65X        TCGA-QH-A65Z        TCGA-QH-A6CS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CU        TCGA-QH-A6CV        TCGA-QH-A6CW        TCGA-QH-A6CX 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6CY        TCGA-QH-A6CZ        TCGA-QH-A6X4        TCGA-QH-A6X5 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A6X8        TCGA-QH-A6X9        TCGA-QH-A6XA        TCGA-QH-A6XC 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-QH-A86X        TCGA-QH-A870        TCGA-R8-A6MK        TCGA-R8-A6ML 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-R8-A6MO        TCGA-R8-A6YH        TCGA-RY-A83X        TCGA-RY-A83Y 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-RY-A83Z        TCGA-RY-A843        TCGA-RY-A845        TCGA-S9-A6TS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6TU        TCGA-S9-A6TV        TCGA-S9-A6TX        TCGA-S9-A6TY 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6U0        TCGA-S9-A6U1        TCGA-S9-A6U5        TCGA-S9-A6U6 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6U9        TCGA-S9-A6WD        TCGA-S9-A6WE        TCGA-S9-A6WG 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A6WH        TCGA-S9-A6WN        TCGA-S9-A6WP        TCGA-S9-A6WQ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7IQ        TCGA-S9-A7IS        TCGA-S9-A7IY        TCGA-S9-A7IZ 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7J0        TCGA-S9-A7J1        TCGA-S9-A7J2        TCGA-S9-A7QX 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-S9-A7QZ        TCGA-S9-A7R1        TCGA-S9-A7R4        TCGA-S9-A7R8 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TM-A7C5        TCGA-TM-A84R        TCGA-TM-A84S        TCGA-TQ-A7RF 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RG        TCGA-TQ-A7RH        TCGA-TQ-A7RK        TCGA-TQ-A7RN 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RQ        TCGA-TQ-A7RR        TCGA-TQ-A7RS        TCGA-TQ-A7RV 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-TQ-A7RW        TCGA-TQ-A8XE        TCGA-VM-A8C8        TCGA-VM-A8C9 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VM-A8CA        TCGA-VM-A8CB        TCGA-VM-A8CD        TCGA-VM-A8CE 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-VM-A8CH        TCGA-VV-A829        TCGA-VV-A86M        TCGA-VW-A7QS 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-W9-A837        TCGA-WY-A85B        TCGA-WY-A85C        TCGA-WY-A85D 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A5 MUTATED        1      1      0      2      0
  SLC25A5 WILD-TYPE    131    108    109    131     30
D80V7, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               0               109
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A5 MUTATED        1      0      0      2      0      0      1
  SLC25A5 WILD-TYPE    133     71     36     64     91     41     73
D80V8, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               2                64
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      2      1
  SLC25A5 WILD-TYPE    135    107    181     82
D80V9, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               0               107
  CLUS_3               2               181
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      2      1
  SLC25A5 WILD-TYPE    221    182    102
D80V10, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        2      0      2
  SLC25A5 WILD-TYPE    182    162    157
D80V11, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               0               162
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      2      1
  SLC25A5 WILD-TYPE     89    138    186     88
D80V12, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               2               186
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = ABCA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        0      0      0
  ABCA7 WILD-TYPE      9     10      8
D81V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        0      0      0      0
  ABCA7 WILD-TYPE      7      7      7      6
D81V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        3      3      3
  ABCA7 WILD-TYPE    166    117    218
D81V3, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             166
  CLUS_2             3             117
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      3      2      1
  ABCA7 WILD-TYPE    219     78    166     41
D81V4, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3              78
  CLUS_3             2             166
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      1      2      0
  ABCA7 WILD-TYPE     88     94    123    115
D81V5, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3              88
  CLUS_2             1              94
  CLUS_3             2             123
  CLUS_4             0             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        3      1      2
  ABCA7 WILD-TYPE     79    158    183
D81V6, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3              79
  CLUS_2             1             158
  CLUS_3             2             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        1      5      1      2      0
  ABCA7 WILD-TYPE    131    104    108    131     30
D81V7, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             5             104
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCA7 MUTATED        1      1      0      1      1      3      2
  ABCA7 WILD-TYPE    133     70     36     65     90     38     72
D81V8, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        2      2      4      1
  ABCA7 WILD-TYPE    134    105    179     82
D81V9, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             4             179
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        2      2      5
  ABCA7 WILD-TYPE    220    182     98
D81V10, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2             182
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        1      2      6
  ABCA7 WILD-TYPE    183    160    153
D81V11, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             6             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        1      1      3      4
  ABCA7 WILD-TYPE     89    137    185     85
D81V12, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             3             185
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = NKD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        0      0      0
  NKD2 WILD-TYPE      9     10      8
D82V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      0      0      0
  NKD2 WILD-TYPE      7      7      7      6
D82V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        1      1      2
  NKD2 WILD-TYPE    168    119    219
D82V3, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            1            119
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        2      1      1      0
  NKD2 WILD-TYPE    220     80    167     42
D82V4, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      0      1      0
  NKD2 WILD-TYPE     91     95    124    115
D82V5, multiclass
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            425 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L     TCGA-DB-A64O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M     TCGA-DB-A75O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US     TCGA-DU-5847 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3     TCGA-DU-A6S8 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O     TCGA-DU-A76R 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB     TCGA-DU-A7TD 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7TG     TCGA-DU-A7TJ     TCGA-E1-5302     TCGA-E1-5303 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322     TCGA-E1-A7YH 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YI     TCGA-E1-A7YJ     TCGA-E1-A7YL     TCGA-E1-A7YM 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YN     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z3 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-EZ-7264     TCGA-F6-A8O3     TCGA-F6-A8O4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-5962     TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6688     TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7634     TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7641     TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8189     TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A60L     TCGA-FG-A6IZ     TCGA-FG-A6J3     TCGA-FG-A70Y 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A70Z     TCGA-FG-A710     TCGA-FG-A713     TCGA-FG-A87N 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7467     TCGA-HT-7468     TCGA-HT-7469 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472     TCGA-HT-7473 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476     TCGA-HT-7477 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480     TCGA-HT-7481 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485     TCGA-HT-7601 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604     TCGA-HT-7605 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608     TCGA-HT-7609 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616     TCGA-HT-7620 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680     TCGA-HT-7681 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687     TCGA-HT-7688 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691     TCGA-HT-7692 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695     TCGA-HT-7854 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857     TCGA-HT-7858 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874     TCGA-HT-7875 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880     TCGA-HT-7881 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902     TCGA-HT-8010 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013     TCGA-HT-8015 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104     TCGA-HT-8105 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109     TCGA-HT-8110 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114     TCGA-HT-8558 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5     TCGA-HT-A5R7 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HT-A614     TCGA-HT-A615 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A616     TCGA-HT-A617     TCGA-HT-A618     TCGA-HT-A619 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A74H     TCGA-HT-A74J 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A74L     TCGA-HT-A74O     TCGA-HW-7486     TCGA-HW-7487 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491     TCGA-HW-7495 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-IK-8125     TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A72X     TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A733     TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A77W     TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A65S     TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CS     TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CX     TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6X5     TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6XC     TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-R8-A6ML     TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-RY-A83Y     TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TY     TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WG     TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WQ     TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7IZ     TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7QX     TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7R8     TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RF     TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RN     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8C9     TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CE     TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VW-A7QS     TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-WY-A85D 
"NKD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        0      0      1
  NKD2 WILD-TYPE     82    159    184
D82V6, multiclass
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            425 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DB-A64L     TCGA-DB-A64O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64P     TCGA-DB-A64Q     TCGA-DB-A64R     TCGA-DB-A64S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A64U     TCGA-DB-A64V     TCGA-DB-A64W     TCGA-DB-A64X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75K     TCGA-DB-A75L     TCGA-DB-A75M     TCGA-DB-A75O 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A75P     TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5143     TCGA-DH-5144     TCGA-DH-A66B     TCGA-DH-A66D 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-A66F     TCGA-DH-A66G     TCGA-DH-A7US     TCGA-DU-5847 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-DU-A6S2     TCGA-DU-A6S3     TCGA-DU-A6S8 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A76K     TCGA-DU-A76L     TCGA-DU-A76O     TCGA-DU-A76R 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7T6     TCGA-DU-A7TA     TCGA-DU-A7TB     TCGA-DU-A7TD 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A7TG     TCGA-DU-A7TJ     TCGA-E1-5302     TCGA-E1-5303 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5304     TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5319     TCGA-E1-5322     TCGA-E1-A7YH 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YI     TCGA-E1-A7YJ     TCGA-E1-A7YL     TCGA-E1-A7YM 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YN     TCGA-E1-A7YQ     TCGA-E1-A7YS     TCGA-E1-A7YV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7YW     TCGA-E1-A7YY     TCGA-E1-A7Z2     TCGA-E1-A7Z3 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-A7Z6     TCGA-EZ-7264     TCGA-F6-A8O3     TCGA-F6-A8O4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-5962     TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6688     TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7634     TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7641     TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8185     TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8189     TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MW     TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A60L     TCGA-FG-A6IZ     TCGA-FG-A6J3     TCGA-FG-A70Y 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A70Z     TCGA-FG-A710     TCGA-FG-A713     TCGA-FG-A87N 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A87Q     TCGA-HT-7467     TCGA-HT-7468     TCGA-HT-7469 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472     TCGA-HT-7473 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476     TCGA-HT-7477 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480     TCGA-HT-7481 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485     TCGA-HT-7601 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604     TCGA-HT-7605 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608     TCGA-HT-7609 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616     TCGA-HT-7620 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680     TCGA-HT-7681 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687     TCGA-HT-7688 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691     TCGA-HT-7692 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695     TCGA-HT-7854 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857     TCGA-HT-7858 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874     TCGA-HT-7875 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880     TCGA-HT-7881 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902     TCGA-HT-8010 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013     TCGA-HT-8015 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104     TCGA-HT-8105 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109     TCGA-HT-8110 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114     TCGA-HT-8558 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5     TCGA-HT-A5R7 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HT-A614     TCGA-HT-A615 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A616     TCGA-HT-A617     TCGA-HT-A618     TCGA-HT-A619 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A61A     TCGA-HT-A61B     TCGA-HT-A74H     TCGA-HT-A74J 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A74L     TCGA-HT-A74O     TCGA-HW-7486     TCGA-HW-7487 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491     TCGA-HW-7495 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321     TCGA-HW-8322 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM     TCGA-IK-7675 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-IK-8125     TCGA-KT-A74X     TCGA-P5-A5ET     TCGA-P5-A5EU 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6     TCGA-P5-A72U     TCGA-P5-A72W 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A72X     TCGA-P5-A72Z     TCGA-P5-A730     TCGA-P5-A731 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A733     TCGA-P5-A735     TCGA-P5-A736     TCGA-P5-A737 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A77W     TCGA-P5-A77X     TCGA-P5-A780     TCGA-P5-A781 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A65S     TCGA-QH-A65V     TCGA-QH-A65X     TCGA-QH-A65Z 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CS     TCGA-QH-A6CU     TCGA-QH-A6CV     TCGA-QH-A6CW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6CX     TCGA-QH-A6CY     TCGA-QH-A6CZ     TCGA-QH-A6X4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6X5     TCGA-QH-A6X8     TCGA-QH-A6X9     TCGA-QH-A6XA 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-QH-A6XC     TCGA-QH-A86X     TCGA-QH-A870     TCGA-R8-A6MK 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-R8-A6ML     TCGA-R8-A6MO     TCGA-R8-A6YH     TCGA-RY-A83X 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-RY-A83Y     TCGA-RY-A83Z     TCGA-RY-A843     TCGA-RY-A845 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TS     TCGA-S9-A6TU     TCGA-S9-A6TV     TCGA-S9-A6TX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6TY     TCGA-S9-A6U0     TCGA-S9-A6U1     TCGA-S9-A6U5 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6U6     TCGA-S9-A6U9     TCGA-S9-A6WD     TCGA-S9-A6WE 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WG     TCGA-S9-A6WH     TCGA-S9-A6WN     TCGA-S9-A6WP 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A6WQ     TCGA-S9-A7IQ     TCGA-S9-A7IS     TCGA-S9-A7IY 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7IZ     TCGA-S9-A7J0     TCGA-S9-A7J1     TCGA-S9-A7J2 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7QX     TCGA-S9-A7QZ     TCGA-S9-A7R1     TCGA-S9-A7R4 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-S9-A7R8     TCGA-TM-A7C5     TCGA-TM-A84R     TCGA-TM-A84S 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RF     TCGA-TQ-A7RG     TCGA-TQ-A7RH     TCGA-TQ-A7RK 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RN     TCGA-TQ-A7RQ     TCGA-TQ-A7RR     TCGA-TQ-A7RS 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-TQ-A7RV     TCGA-TQ-A7RW     TCGA-TQ-A8XE     TCGA-VM-A8C8 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8C9     TCGA-VM-A8CA     TCGA-VM-A8CB     TCGA-VM-A8CD 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VM-A8CE     TCGA-VM-A8CH     TCGA-VV-A829     TCGA-VV-A86M 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-VW-A7QS     TCGA-W9-A837     TCGA-WY-A85B     TCGA-WY-A85C 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-WY-A85D 
"NKD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKD2 MUTATED        2      1      1      0      0
  NKD2 WILD-TYPE    130    108    108    133     30
D82V7, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKD2 MUTATED        1      1      1      1      0      0      0
  NKD2 WILD-TYPE    133     70     35     65     91     41     74
D82V8, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      2      1      1
  NKD2 WILD-TYPE    136    105    182     82
D82V9, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            1            182
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        2      1      1
  NKD2 WILD-TYPE    220    183    102
D82V10, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        2      1      1
  NKD2 WILD-TYPE    182    161    158
D82V11, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            1            161
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        1      1      1      1
  NKD2 WILD-TYPE     89    137    187     88
D82V12, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            1            187
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = MAX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAX MUTATED        0      1      0
  MAX WILD-TYPE      9      9      8
D83V1, multiclass
[1] "Remove cluster labels:" "MAX MUTATED"           
clus
  MAX MUTATED MAX WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-E1-5322 
"MAX WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAX MUTATED        0      0      1      0
  MAX WILD-TYPE      7      7      6      6
D83V2, multiclass
[1] "Remove cluster labels:" "MAX MUTATED"           
clus
  MAX MUTATED MAX WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" "MAX WILD-TYPE" 
   TCGA-E1-5322 
"MAX WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAX MUTATED        0      0      4
  MAX WILD-TYPE    169    120    217
D83V3, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0           169
  CLUS_2           0           120
  CLUS_3           4           217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAX MUTATED        0      0      3      1
  MAX WILD-TYPE    222     81    165     41
D83V4, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0           222
  CLUS_2           0            81
  CLUS_3           3           165
  CLUS_4           1            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAX MUTATED        0      0      1      3
  MAX WILD-TYPE     91     95    124    112
D83V5, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0            91
  CLUS_2           0            95
  CLUS_3           1           124
  CLUS_4           3           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAX MUTATED        0      1      3
  MAX WILD-TYPE     82    158    182
D83V6, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0            82
  CLUS_2           1           158
  CLUS_3           3           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAX MUTATED        0      0      1      2      1
  MAX WILD-TYPE    132    109    108    131     29
D83V7, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0           132
  CLUS_2           0           109
  CLUS_3           1           108
  CLUS_4           2           131
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAX MUTATED        0      0      1      0      1      0      2
  MAX WILD-TYPE    134     71     35     66     90     41     72
D83V8, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0           134
  CLUS_2           0            71
  CLUS_3           1            35
  CLUS_4           0            66
  CLUS_5           1            90
  CLUS_6           0            41
  CLUS_7           2            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAX MUTATED        0      0      3      1
  MAX WILD-TYPE    136    107    180     82
D83V9, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0           136
  CLUS_2           0           107
  CLUS_3           3           180
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAX MUTATED        2      2      0
  MAX WILD-TYPE    220    182    103
D83V10, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           2           220
  CLUS_2           2           182
  CLUS_3           0           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAX MUTATED        0      2      2
  MAX WILD-TYPE    184    160    157
D83V11, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0           184
  CLUS_2           2           160
  CLUS_3           2           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAX MUTATED        0      2      2      0
  MAX WILD-TYPE     90    136    186     89
D83V12, multiclass
        clus
vv       MAX MUTATED MAX WILD-TYPE
  CLUS_1           0            90
  CLUS_2           2           136
  CLUS_3           2           186
  CLUS_4           0            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = VSIG4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        0      0      0
  VSIG4 WILD-TYPE      9     10      8
D84V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        0      0      0      0
  VSIG4 WILD-TYPE      7      7      7      6
D84V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        4      0      2
  VSIG4 WILD-TYPE    165    120    219
D84V3, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             4             165
  CLUS_2             0             120
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        2      0      2      2
  VSIG4 WILD-TYPE    220     81    166     40
D84V4, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             0              81
  CLUS_3             2             166
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        2      0      3      1
  VSIG4 WILD-TYPE     89     95    122    114
D84V5, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2              89
  CLUS_2             0              95
  CLUS_3             3             122
  CLUS_4             1             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        2      2      2
  VSIG4 WILD-TYPE     80    157    183
D84V6, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2              80
  CLUS_2             2             157
  CLUS_3             2             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VSIG4 MUTATED        2      0      2      2      0
  VSIG4 WILD-TYPE    130    109    107    131     30
D84V7, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             0             109
  CLUS_3             2             107
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VSIG4 MUTATED        2      0      1      2      1      0      0
  VSIG4 WILD-TYPE    132     71     35     64     90     41     74
D84V8, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             2              64
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        1      1      2      2
  VSIG4 WILD-TYPE    135    106    181     81
D84V9, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             2             181
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        3      3      0
  VSIG4 WILD-TYPE    219    181    103
D84V10, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3             181
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        2      3      1
  VSIG4 WILD-TYPE    182    159    158
D84V11, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             3             159
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        0      3      3      0
  VSIG4 WILD-TYPE     90    135    185     89
D84V12, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             3             135
  CLUS_3             3             185
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
