[1] "ofn"        "-oTLIHC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LIHC-TP/20139336/LIHC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/19782292/transformed.cor.cli.txt"

nPatients in clinical file=440, in cluster file=370, common to both=370
[1]  62 370
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           89                           281 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           89                           281 
[1] "AMP PEAK  2(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        283                          87 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        283                          87 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          270                           100 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          270                           100 
[1] "AMP PEAK  4(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           65                           305 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           65                           305 
[1] "AMP PEAK  5(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           64                           306 
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           64                           306 
[1] "AMP PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            77                            293 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            77                            293 
[1] "AMP PEAK  7(4P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE 
                         54                         316 
  AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE 
                         54                         316 
[1] "AMP PEAK  8(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                           163                            207 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                           163                            207 
[1] "AMP PEAK  9(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                          135                           235 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                          135                           235 
[1] "AMP PEAK 10(6P25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                          159                           211 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                          159                           211 
[1] "AMP PEAK 11(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                          158                           212 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                          158                           212 
[1] "AMP PEAK 12(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                        109                         261 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                        109                         261 
[1] "AMP PEAK 13(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                         83                         287 
  AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE 
                         83                         287 
[1] "AMP PEAK 14(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                          120                           250 
  AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE 
                          120                           250 
[1] "AMP PEAK 15(8Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE 
                          207                           163 
  AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE 
                          207                           163 
[1] "AMP PEAK 16(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           231                            139 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           231                            139 
[1] "AMP PEAK 17(9Q34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE 
                           47                           323 
  AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE 
                           47                           323 
[1] "AMP PEAK 18(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                            57                            313 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                            57                            313 
[1] "AMP PEAK 19(13Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE 
                            67                            303 
  AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE 
                            67                            303 
[1] "AMP PEAK 20(13Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE 
                            67                            303 
  AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE 
                            67                            303 
[1] "AMP PEAK 21(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            54                            316 
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            54                            316 
[1] "AMP PEAK 22(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                            46                            324 
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                            46                            324 
[1] "AMP PEAK 23(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE 
                           145                            225 
  AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE 
                           145                            225 
[1] "AMP PEAK 24(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE 
                             69                             301 
  AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE 
                             69                             301 
[1] "AMP PEAK 25(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                          78                          292 
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                          78                          292 
[1] "AMP PEAK 26(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                             91                             279 
  AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE 
                             91                             279 
[1] "AMP PEAK 27(20Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE 
                            124                             246 
  AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE 
                            124                             246 
[1] "AMP PEAK 28(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE 
                            128                             242 
  AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE 
                            128                             242 
[1] "AMP PEAK 29(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                         85                         285 
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                         85                         285 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           162                            208 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           162                            208 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                           142                            228 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                           142                            228 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           52                           318 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           52                           318 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           62                           308 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           62                           308 
[1] "DEL PEAK  5(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         73                         297 
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         73                         297 
[1] "DEL PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           85                           285 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           85                           285 
[1] "DEL PEAK  7(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE 
                          171                           199 
  DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE 
                          171                           199 
[1] "DEL PEAK  8(4Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE 
                          172                           198 
  DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE 
                          172                           198 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                          172                           198 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                          172                           198 
[1] "DEL PEAK 10(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE 
                        136                         234 
  DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE 
                        136                         234 
[1] "DEL PEAK 11(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE 
                          247                           123 
  DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE 
                          247                           123 
[1] "DEL PEAK 12(8P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE 
                        242                         128 
  DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE 
                        242                         128 
[1] "DEL PEAK 13(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                          150                           220 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                          150                           220 
[1] "DEL PEAK 14(9Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE 
                          119                           251 
  DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE 
                          119                           251 
[1] "DEL PEAK 15(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             97                             273 
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             97                             273 
[1] "DEL PEAK 16(10Q26.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE 
                            105                             265 
  DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE 
                            105                             265 
[1] "DEL PEAK 17(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE 
                            77                            293 
  DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE 
                            77                            293 
[1] "DEL PEAK 18(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE 
                            95                            275 
  DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE 
                            95                            275 
[1] "DEL PEAK 19(12P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE 
                            78                            292 
  DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE 
                            78                            292 
[1] "DEL PEAK 20(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             59                             311 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             59                             311 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           179                            191 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           179                            191 
[1] "DEL PEAK 22(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                           131                            239 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                           131                            239 
[1] "DEL PEAK 23(14Q32.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                            132                             238 
  DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE 
                            132                             238 
[1] "DEL PEAK 24(15Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE 
                            79                            291 
  DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE 
                            79                            291 
[1] "DEL PEAK 25(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                           162                            208 
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                           162                            208 
[1] "DEL PEAK 26(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE 
                           226                            144 
  DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE 
                           226                            144 
[1] "DEL PEAK 27(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                           195                            175 
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                           195                            175 
[1] "DEL PEAK 28(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            94                            276 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            94                            276 
[1] "DEL PEAK 29(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            87                            283 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            87                            283 
[1] "DEL PEAK 30(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            29                            341 
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            29                            341 
[1] "DEL PEAK 31(22Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE 
                            79                            291 
  DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE 
                            79                            291 
[1] "DEL PEAK 32(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             83                             287 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             83                             287 
[1] "DEL PEAK 33(XQ26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE 
                           67                           303 
  DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE 
                           67                           303 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 370 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "RPPA_CNMF is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "RPPA_CHIERARCHICAL is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 370 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       22     49     18
  AMP PEAK  1(1P22.3) WILD-TYPE     87     75    119
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          22                            87
  CLUS_2                          49                            75
  CLUS_3                          18                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       11     40     38
  AMP PEAK  1(1P22.3) WILD-TYPE     77    127     77
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                          40                           127
  CLUS_3                          38                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       22     18     21     13     14
  AMP PEAK  1(1P22.3) WILD-TYPE     39     79     47     56     55
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          22                            39
  CLUS_2                          18                            79
  CLUS_3                          21                            47
  CLUS_4                          13                            56
  CLUS_5                          14                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       16      8     27     28      9
  AMP PEAK  1(1P22.3) WILD-TYPE     38     48     87     56     47
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          16                            38
  CLUS_2                           8                            48
  CLUS_3                          27                            87
  CLUS_4                          28                            56
  CLUS_5                           9                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P22.3) MUTATED       12     35     10     31
  AMP PEAK  1(1P22.3) WILD-TYPE     53     92     39     93
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          12                            53
  CLUS_2                          35                            92
  CLUS_3                          10                            39
  CLUS_4                          31                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       12     24     12     30     10
  AMP PEAK  1(1P22.3) WILD-TYPE     32     71     44     92     38
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          24                            71
  CLUS_3                          12                            44
  CLUS_4                          30                            92
  CLUS_5                          10                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P22.3) MUTATED       32     18     19     13
  AMP PEAK  1(1P22.3) WILD-TYPE     60     69    100     29
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          32                            60
  CLUS_2                          18                            69
  CLUS_3                          19                           100
  CLUS_4                          13                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       20     21     26      9      6
  AMP PEAK  1(1P22.3) WILD-TYPE     47     65     73     26     47
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          20                            47
  CLUS_2                          21                            65
  CLUS_3                          26                            73
  CLUS_4                           9                            26
  CLUS_5                           6                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       93    111     79
  AMP PEAK  2(1Q22) WILD-TYPE     16     13     58
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        93                          16
  CLUS_2                       111                          13
  CLUS_3                        79                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       47    135    101
  AMP PEAK  2(1Q22) WILD-TYPE     41     32     14
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        47                          41
  CLUS_2                       135                          32
  CLUS_3                       101                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q22) MUTATED       45     65     64     46     58
  AMP PEAK  2(1Q22) WILD-TYPE     16     32      4     23     11
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        45                          16
  CLUS_2                        65                          32
  CLUS_3                        64                           4
  CLUS_4                        46                          23
  CLUS_5                        58                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q22) MUTATED       36     39     81     73     49
  AMP PEAK  2(1Q22) WILD-TYPE     18     17     33     11      7
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        36                          18
  CLUS_2                        39                          17
  CLUS_3                        81                          33
  CLUS_4                        73                          11
  CLUS_5                        49                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       50     99     35     95
  AMP PEAK  2(1Q22) WILD-TYPE     15     28     14     29
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        50                          15
  CLUS_2                        99                          28
  CLUS_3                        35                          14
  CLUS_4                        95                          29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q22) MUTATED       39     65     47     87     41
  AMP PEAK  2(1Q22) WILD-TYPE      5     30      9     35      7
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        39                           5
  CLUS_2                        65                          30
  CLUS_3                        47                           9
  CLUS_4                        87                          35
  CLUS_5                        41                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       77     63     89     35
  AMP PEAK  2(1Q22) WILD-TYPE     15     24     30      7
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        77                          15
  CLUS_2                        63                          24
  CLUS_3                        89                          30
  CLUS_4                        35                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q22) MUTATED       54     63     73     31     43
  AMP PEAK  2(1Q22) WILD-TYPE     13     23     26      4     10
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        54                          13
  CLUS_2                        63                          23
  CLUS_3                        73                          26
  CLUS_4                        31                           4
  CLUS_5                        43                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       90    103     77
  AMP PEAK  3(1Q42.3) WILD-TYPE     19     21     60
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          90                            19
  CLUS_2                         103                            21
  CLUS_3                          77                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       48    130     92
  AMP PEAK  3(1Q42.3) WILD-TYPE     40     37     23
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          48                            40
  CLUS_2                         130                            37
  CLUS_3                          92                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       43     57     63     46     56
  AMP PEAK  3(1Q42.3) WILD-TYPE     18     40      5     23     13
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          43                            18
  CLUS_2                          57                            40
  CLUS_3                          63                             5
  CLUS_4                          46                            23
  CLUS_5                          56                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       34     39     73     72     47
  AMP PEAK  3(1Q42.3) WILD-TYPE     20     17     41     12      9
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          34                            20
  CLUS_2                          39                            17
  CLUS_3                          73                            41
  CLUS_4                          72                            12
  CLUS_5                          47                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       47     90     33     96
  AMP PEAK  3(1Q42.3) WILD-TYPE     18     37     16     28
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          47                            18
  CLUS_2                          90                            37
  CLUS_3                          33                            16
  CLUS_4                          96                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       32     61     44     87     42
  AMP PEAK  3(1Q42.3) WILD-TYPE     12     34     12     35      6
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          32                            12
  CLUS_2                          61                            34
  CLUS_3                          44                            12
  CLUS_4                          87                            35
  CLUS_5                          42                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       73     64     82     32
  AMP PEAK  3(1Q42.3) WILD-TYPE     19     23     37     10
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          73                            19
  CLUS_2                          64                            23
  CLUS_3                          82                            37
  CLUS_4                          32                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       54     60     71     25     41
  AMP PEAK  3(1Q42.3) WILD-TYPE     13     26     28     10     12
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          54                            13
  CLUS_2                          60                            26
  CLUS_3                          71                            28
  CLUS_4                          25                            10
  CLUS_5                          41                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.1) MUTATED       12     33     20
  AMP PEAK  4(2P24.1) WILD-TYPE     97     91    117
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          12                            97
  CLUS_2                          33                            91
  CLUS_3                          20                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.1) MUTATED       12     32     21
  AMP PEAK  4(2P24.1) WILD-TYPE     76    135     94
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          12                            76
  CLUS_2                          32                           135
  CLUS_3                          21                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.1) MUTATED       14     20     14      8      7
  AMP PEAK  4(2P24.1) WILD-TYPE     47     77     54     61     62
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          14                            47
  CLUS_2                          20                            77
  CLUS_3                          14                            54
  CLUS_4                           8                            61
  CLUS_5                           7                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.1) MUTATED       17      3     21     16      6
  AMP PEAK  4(2P24.1) WILD-TYPE     37     53     93     68     50
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                           3                            53
  CLUS_3                          21                            93
  CLUS_4                          16                            68
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.1) MUTATED       14     25      8     17
  AMP PEAK  4(2P24.1) WILD-TYPE     51    102     41    107
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          14                            51
  CLUS_2                          25                           102
  CLUS_3                           8                            41
  CLUS_4                          17                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.1) MUTATED       14     20      9     16      5
  AMP PEAK  4(2P24.1) WILD-TYPE     30     75     47    106     43
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          14                            30
  CLUS_2                          20                            75
  CLUS_3                           9                            47
  CLUS_4                          16                           106
  CLUS_5                           5                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.1) MUTATED       24     12     19      6
  AMP PEAK  4(2P24.1) WILD-TYPE     68     75    100     36
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          24                            68
  CLUS_2                          12                            75
  CLUS_3                          19                           100
  CLUS_4                           6                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.1) MUTATED       16     18     13      9      5
  AMP PEAK  4(2P24.1) WILD-TYPE     51     68     86     26     48
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          16                            51
  CLUS_2                          18                            68
  CLUS_3                          13                            86
  CLUS_4                           9                            26
  CLUS_5                           5                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       16     33     15
  AMP PEAK  5(2Q33.1) WILD-TYPE     93     91    122
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          16                            93
  CLUS_2                          33                            91
  CLUS_3                          15                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       12     30     22
  AMP PEAK  5(2Q33.1) WILD-TYPE     76    137     93
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          12                            76
  CLUS_2                          30                           137
  CLUS_3                          22                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED       14     10     18     10     10
  AMP PEAK  5(2Q33.1) WILD-TYPE     47     87     50     59     59
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          14                            47
  CLUS_2                          10                            87
  CLUS_3                          18                            50
  CLUS_4                          10                            59
  CLUS_5                          10                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED       15      4     14     20      9
  AMP PEAK  5(2Q33.1) WILD-TYPE     39     52    100     64     47
D5V4, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                           4                            52
  CLUS_3                          14                           100
  CLUS_4                          20                            64
  CLUS_5                           9                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q33.1) MUTATED       15     20     11     17
  AMP PEAK  5(2Q33.1) WILD-TYPE     50    107     38    107
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          15                            50
  CLUS_2                          20                           107
  CLUS_3                          11                            38
  CLUS_4                          17                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED       12     20      9     18      4
  AMP PEAK  5(2Q33.1) WILD-TYPE     32     75     47    104     44
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          20                            75
  CLUS_3                           9                            47
  CLUS_4                          18                           104
  CLUS_5                           4                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q33.1) MUTATED       29      9     13     10
  AMP PEAK  5(2Q33.1) WILD-TYPE     63     78    106     32
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          29                            63
  CLUS_2                           9                            78
  CLUS_3                          13                           106
  CLUS_4                          10                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED       16     16     15      9      5
  AMP PEAK  5(2Q33.1) WILD-TYPE     51     70     84     26     48
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          16                            51
  CLUS_2                          16                            70
  CLUS_3                          15                            84
  CLUS_4                           9                            26
  CLUS_5                           5                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       15     41     21
  AMP PEAK  6(3Q26.31) WILD-TYPE     94     83    116
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           15                             94
  CLUS_2                           41                             83
  CLUS_3                           21                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       13     45     19
  AMP PEAK  6(3Q26.31) WILD-TYPE     75    122     96
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           13                             75
  CLUS_2                           45                            122
  CLUS_3                           19                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       22     25     11     10      9
  AMP PEAK  6(3Q26.31) WILD-TYPE     39     72     57     59     60
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           22                             39
  CLUS_2                           25                             72
  CLUS_3                           11                             57
  CLUS_4                           10                             59
  CLUS_5                            9                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       17      5     30     16      9
  AMP PEAK  6(3Q26.31) WILD-TYPE     37     51     84     68     47
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                            5                             51
  CLUS_3                           30                             84
  CLUS_4                           16                             68
  CLUS_5                            9                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.31) MUTATED       18     23     15     20
  AMP PEAK  6(3Q26.31) WILD-TYPE     47    104     34    104
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           23                            104
  CLUS_3                           15                             34
  CLUS_4                           20                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       17     24      9     22      4
  AMP PEAK  6(3Q26.31) WILD-TYPE     27     71     47    100     44
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           17                             27
  CLUS_2                           24                             71
  CLUS_3                            9                             47
  CLUS_4                           22                            100
  CLUS_5                            4                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.31) MUTATED       21     12     23     15
  AMP PEAK  6(3Q26.31) WILD-TYPE     71     75     96     27
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           21                             71
  CLUS_2                           12                             75
  CLUS_3                           23                             96
  CLUS_4                           15                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       13     22     18     13      5
  AMP PEAK  6(3Q26.31) WILD-TYPE     54     64     81     22     48
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           13                             54
  CLUS_2                           22                             64
  CLUS_3                           18                             81
  CLUS_4                           13                             22
  CLUS_5                            5                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4P14) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P14) MUTATED       13     29     12
  AMP PEAK  7(4P14) WILD-TYPE     96     95    125
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        13                          96
  CLUS_2                        29                          95
  CLUS_3                        12                         125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P14) MUTATED       12     17     25
  AMP PEAK  7(4P14) WILD-TYPE     76    150     90
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        12                          76
  CLUS_2                        17                         150
  CLUS_3                        25                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P14) MUTATED       10     14     20      8      1
  AMP PEAK  7(4P14) WILD-TYPE     51     83     48     61     68
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        10                          51
  CLUS_2                        14                          83
  CLUS_3                        20                          48
  CLUS_4                         8                          61
  CLUS_5                         1                          68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P14) MUTATED       10      8     13     21      1
  AMP PEAK  7(4P14) WILD-TYPE     44     48    101     63     55
D7V4, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        10                          44
  CLUS_2                         8                          48
  CLUS_3                        13                         101
  CLUS_4                        21                          63
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P14) MUTATED       11     13     11     19
  AMP PEAK  7(4P14) WILD-TYPE     54    114     38    105
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        11                          54
  CLUS_2                        13                         114
  CLUS_3                        11                          38
  CLUS_4                        19                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P14) MUTATED        8     15     10     20      1
  AMP PEAK  7(4P14) WILD-TYPE     36     80     46    102     47
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                         8                          36
  CLUS_2                        15                          80
  CLUS_3                        10                          46
  CLUS_4                        20                         102
  CLUS_5                         1                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P14) MUTATED       18     14     10     12
  AMP PEAK  7(4P14) WILD-TYPE     74     73    109     30
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        18                          74
  CLUS_2                        14                          73
  CLUS_3                        10                         109
  CLUS_4                        12                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P14) MUTATED       12     17     18      6      1
  AMP PEAK  7(4P14) WILD-TYPE     55     69     81     29     52
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P14) MUTATED AMP PEAK  7(4P14) WILD-TYPE
  CLUS_1                        12                          55
  CLUS_2                        17                          69
  CLUS_3                        18                          81
  CLUS_4                         6                          29
  CLUS_5                         1                          52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       54     72     37
  AMP PEAK  8(5P15.33) WILD-TYPE     55     52    100
D8V1, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           54                             55
  CLUS_2                           72                             52
  CLUS_3                           37                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       29     83     51
  AMP PEAK  8(5P15.33) WILD-TYPE     59     84     64
D8V2, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           29                             59
  CLUS_2                           83                             84
  CLUS_3                           51                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P15.33) MUTATED       35     43     26     28     29
  AMP PEAK  8(5P15.33) WILD-TYPE     26     54     42     41     40
D8V3, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           35                             26
  CLUS_2                           43                             54
  CLUS_3                           26                             42
  CLUS_4                           28                             41
  CLUS_5                           29                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P15.33) MUTATED       27     22     55     34     23
  AMP PEAK  8(5P15.33) WILD-TYPE     27     34     59     50     33
D8V4, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           27                             27
  CLUS_2                           22                             34
  CLUS_3                           55                             59
  CLUS_4                           34                             50
  CLUS_5                           23                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(5P15.33) MUTATED       36     59     17     48
  AMP PEAK  8(5P15.33) WILD-TYPE     29     68     32     76
D8V5, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           36                             29
  CLUS_2                           59                             68
  CLUS_3                           17                             32
  CLUS_4                           48                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P15.33) MUTATED       26     47     28     43     16
  AMP PEAK  8(5P15.33) WILD-TYPE     18     48     28     79     32
D8V6, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           26                             18
  CLUS_2                           47                             48
  CLUS_3                           28                             28
  CLUS_4                           43                             79
  CLUS_5                           16                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(5P15.33) MUTATED       50     33     48     21
  AMP PEAK  8(5P15.33) WILD-TYPE     42     54     71     21
D8V7, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           50                             42
  CLUS_2                           33                             54
  CLUS_3                           48                             71
  CLUS_4                           21                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P15.33) MUTATED       35     41     36     19     21
  AMP PEAK  8(5P15.33) WILD-TYPE     32     45     63     16     32
D8V8, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           35                             32
  CLUS_2                           41                             45
  CLUS_3                           36                             63
  CLUS_4                           19                             16
  CLUS_5                           21                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5Q35.3) MUTATED       56     46     33
  AMP PEAK  9(5Q35.3) WILD-TYPE     53     78    104
D9V1, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          56                            53
  CLUS_2                          46                            78
  CLUS_3                          33                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5Q35.3) MUTATED       22     66     47
  AMP PEAK  9(5Q35.3) WILD-TYPE     66    101     68
D9V2, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          22                            66
  CLUS_2                          66                           101
  CLUS_3                          47                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5Q35.3) MUTATED       21     33     21     27     30
  AMP PEAK  9(5Q35.3) WILD-TYPE     40     64     47     42     39
D9V3, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          33                            64
  CLUS_3                          21                            47
  CLUS_4                          27                            42
  CLUS_5                          30                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5Q35.3) MUTATED       18     20     40     33     21
  AMP PEAK  9(5Q35.3) WILD-TYPE     36     36     74     51     35
D9V4, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          18                            36
  CLUS_2                          20                            36
  CLUS_3                          40                            74
  CLUS_4                          33                            51
  CLUS_5                          21                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5Q35.3) MUTATED       25     46     16     45
  AMP PEAK  9(5Q35.3) WILD-TYPE     40     81     33     79
D9V5, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          25                            40
  CLUS_2                          46                            81
  CLUS_3                          16                            33
  CLUS_4                          45                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5Q35.3) MUTATED       16     34     21     44     17
  AMP PEAK  9(5Q35.3) WILD-TYPE     28     61     35     78     31
D9V6, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          16                            28
  CLUS_2                          34                            61
  CLUS_3                          21                            35
  CLUS_4                          44                            78
  CLUS_5                          17                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5Q35.3) MUTATED       31     34     41     16
  AMP PEAK  9(5Q35.3) WILD-TYPE     61     53     78     26
D9V7, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          31                            61
  CLUS_2                          34                            53
  CLUS_3                          41                            78
  CLUS_4                          16                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5Q35.3) MUTATED       24     26     36     13     23
  AMP PEAK  9(5Q35.3) WILD-TYPE     43     60     63     22     30
D9V8, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          26                            60
  CLUS_3                          36                            63
  CLUS_4                          13                            22
  CLUS_5                          23                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P25.2) MUTATED       50     79     30
  AMP PEAK 10(6P25.2) WILD-TYPE     59     45    107
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          50                            59
  CLUS_2                          79                            45
  CLUS_3                          30                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P25.2) MUTATED       21     82     56
  AMP PEAK 10(6P25.2) WILD-TYPE     67     85     59
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          21                            67
  CLUS_2                          82                            85
  CLUS_3                          56                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P25.2) MUTATED       30     36     37     21     35
  AMP PEAK 10(6P25.2) WILD-TYPE     31     61     31     48     34
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          30                            31
  CLUS_2                          36                            61
  CLUS_3                          37                            31
  CLUS_4                          21                            48
  CLUS_5                          35                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P25.2) MUTATED       24     16     45     46     28
  AMP PEAK 10(6P25.2) WILD-TYPE     30     40     69     38     28
D10V4, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          24                            30
  CLUS_2                          16                            40
  CLUS_3                          45                            69
  CLUS_4                          46                            38
  CLUS_5                          28                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P25.2) MUTATED       31     54     22     48
  AMP PEAK 10(6P25.2) WILD-TYPE     34     73     27     76
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          31                            34
  CLUS_2                          54                            73
  CLUS_3                          22                            27
  CLUS_4                          48                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P25.2) MUTATED       24     34     26     45     26
  AMP PEAK 10(6P25.2) WILD-TYPE     20     61     30     77     22
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          34                            61
  CLUS_3                          26                            30
  CLUS_4                          45                            77
  CLUS_5                          26                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P25.2) MUTATED       45     32     44     20
  AMP PEAK 10(6P25.2) WILD-TYPE     47     55     75     22
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          45                            47
  CLUS_2                          32                            55
  CLUS_3                          44                            75
  CLUS_4                          20                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P25.2) MUTATED       34     31     38     16     22
  AMP PEAK 10(6P25.2) WILD-TYPE     33     55     61     19     31
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          34                            33
  CLUS_2                          31                            55
  CLUS_3                          38                            61
  CLUS_4                          16                            19
  CLUS_5                          22                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6P21.1) MUTATED       47     73     38
  AMP PEAK 11(6P21.1) WILD-TYPE     62     51     99
D11V1, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          47                            62
  CLUS_2                          73                            51
  CLUS_3                          38                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6P21.1) MUTATED       22     84     52
  AMP PEAK 11(6P21.1) WILD-TYPE     66     83     63
D11V2, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          22                            66
  CLUS_2                          84                            83
  CLUS_3                          52                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6P21.1) MUTATED       25     44     36     18     35
  AMP PEAK 11(6P21.1) WILD-TYPE     36     53     32     51     34
D11V3, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          25                            36
  CLUS_2                          44                            53
  CLUS_3                          36                            32
  CLUS_4                          18                            51
  CLUS_5                          35                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6P21.1) MUTATED       22     15     52     41     28
  AMP PEAK 11(6P21.1) WILD-TYPE     32     41     62     43     28
D11V4, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          22                            32
  CLUS_2                          15                            41
  CLUS_3                          52                            62
  CLUS_4                          41                            43
  CLUS_5                          28                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6P21.1) MUTATED       32     56     25     43
  AMP PEAK 11(6P21.1) WILD-TYPE     33     71     24     81
D11V5, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          32                            33
  CLUS_2                          56                            71
  CLUS_3                          25                            24
  CLUS_4                          43                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6P21.1) MUTATED       24     33     23     49     27
  AMP PEAK 11(6P21.1) WILD-TYPE     20     62     33     73     21
D11V6, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          33                            62
  CLUS_3                          23                            33
  CLUS_4                          49                            73
  CLUS_5                          27                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6P21.1) MUTATED       37     32     50     23
  AMP PEAK 11(6P21.1) WILD-TYPE     55     55     69     19
D11V7, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          37                            55
  CLUS_2                          32                            55
  CLUS_3                          50                            69
  CLUS_4                          23                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6P21.1) MUTATED       30     30     41     18     23
  AMP PEAK 11(6P21.1) WILD-TYPE     37     56     58     17     30
D11V8, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          30                            37
  CLUS_2                          30                            56
  CLUS_3                          41                            58
  CLUS_4                          18                            17
  CLUS_5                          23                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q12) MUTATED       33     55     21
  AMP PEAK 12(6Q12) WILD-TYPE     76     69    116
D12V1, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        33                          76
  CLUS_2                        55                          69
  CLUS_3                        21                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q12) MUTATED       17     54     38
  AMP PEAK 12(6Q12) WILD-TYPE     71    113     77
D12V2, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        17                          71
  CLUS_2                        54                         113
  CLUS_3                        38                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       22     25     29     14     19
  AMP PEAK 12(6Q12) WILD-TYPE     39     72     39     55     50
D12V3, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        22                          39
  CLUS_2                        25                          72
  CLUS_3                        29                          39
  CLUS_4                        14                          55
  CLUS_5                        19                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       20     13     29     33     14
  AMP PEAK 12(6Q12) WILD-TYPE     34     43     85     51     42
D12V4, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        20                          34
  CLUS_2                        13                          43
  CLUS_3                        29                          85
  CLUS_4                        33                          51
  CLUS_5                        14                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q12) MUTATED       22     34     18     34
  AMP PEAK 12(6Q12) WILD-TYPE     43     93     31     90
D12V5, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        22                          43
  CLUS_2                        34                          93
  CLUS_3                        18                          31
  CLUS_4                        34                          90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       17     25     15     38     13
  AMP PEAK 12(6Q12) WILD-TYPE     27     70     41     84     35
D12V6, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        17                          27
  CLUS_2                        25                          70
  CLUS_3                        15                          41
  CLUS_4                        38                          84
  CLUS_5                        13                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q12) MUTATED       35     21     26     18
  AMP PEAK 12(6Q12) WILD-TYPE     57     66     93     24
D12V7, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        35                          57
  CLUS_2                        21                          66
  CLUS_3                        26                          93
  CLUS_4                        18                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       25     24     30     12      9
  AMP PEAK 12(6Q12) WILD-TYPE     42     62     69     23     44
D12V8, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        25                          42
  CLUS_2                        24                          62
  CLUS_3                        30                          69
  CLUS_4                        12                          23
  CLUS_5                         9                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(6Q12) MUTATED       25     45     13
  AMP PEAK 13(6Q12) WILD-TYPE     84     79    124
D13V1, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        25                          84
  CLUS_2                        45                          79
  CLUS_3                        13                         124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(6Q12) MUTATED       10     40     33
  AMP PEAK 13(6Q12) WILD-TYPE     78    127     82
D13V2, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        10                          78
  CLUS_2                        40                         127
  CLUS_3                        33                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(6Q12) MUTATED       16     14     26     13     14
  AMP PEAK 13(6Q12) WILD-TYPE     45     83     42     56     55
D13V3, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        16                          45
  CLUS_2                        14                          83
  CLUS_3                        26                          42
  CLUS_4                        13                          56
  CLUS_5                        14                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(6Q12) MUTATED       15     10     17     30     11
  AMP PEAK 13(6Q12) WILD-TYPE     39     46     97     54     45
D13V4, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        15                          39
  CLUS_2                        10                          46
  CLUS_3                        17                          97
  CLUS_4                        30                          54
  CLUS_5                        11                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(6Q12) MUTATED       14     27     13     29
  AMP PEAK 13(6Q12) WILD-TYPE     51    100     36     95
D13V5, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        14                          51
  CLUS_2                        27                         100
  CLUS_3                        13                          36
  CLUS_4                        29                          95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(6Q12) MUTATED       12     17     15     30      9
  AMP PEAK 13(6Q12) WILD-TYPE     32     78     41     92     39
D13V6, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        12                          32
  CLUS_2                        17                          78
  CLUS_3                        15                          41
  CLUS_4                        30                          92
  CLUS_5                         9                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(6Q12) MUTATED       27     17     17     16
  AMP PEAK 13(6Q12) WILD-TYPE     65     70    102     26
D13V7, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        27                          65
  CLUS_2                        17                          70
  CLUS_3                        17                         102
  CLUS_4                        16                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(6Q12) MUTATED       21     14     26      9      7
  AMP PEAK 13(6Q12) WILD-TYPE     46     72     73     26     46
D13V8, multiclass
        clus
vv       AMP PEAK 13(6Q12) MUTATED AMP PEAK 13(6Q12) WILD-TYPE
  CLUS_1                        21                          46
  CLUS_2                        14                          72
  CLUS_3                        26                          73
  CLUS_4                         9                          26
  CLUS_5                         7                          46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q31.2) MUTATED       32     48     40
  AMP PEAK 14(7Q31.2) WILD-TYPE     77     76     97
D14V1, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          32                            77
  CLUS_2                          48                            76
  CLUS_3                          40                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q31.2) MUTATED       22     68     30
  AMP PEAK 14(7Q31.2) WILD-TYPE     66     99     85
D14V2, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          22                            66
  CLUS_2                          68                            99
  CLUS_3                          30                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q31.2) MUTATED       21     33     21     21     23
  AMP PEAK 14(7Q31.2) WILD-TYPE     40     64     47     48     46
D14V3, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          33                            64
  CLUS_3                          21                            47
  CLUS_4                          21                            48
  CLUS_5                          23                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q31.2) MUTATED       19     18     38     24     20
  AMP PEAK 14(7Q31.2) WILD-TYPE     35     38     76     60     36
D14V4, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          19                            35
  CLUS_2                          18                            38
  CLUS_3                          38                            76
  CLUS_4                          24                            60
  CLUS_5                          20                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q31.2) MUTATED       18     47     15     37
  AMP PEAK 14(7Q31.2) WILD-TYPE     47     80     34     87
D14V5, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          18                            47
  CLUS_2                          47                            80
  CLUS_3                          15                            34
  CLUS_4                          37                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q31.2) MUTATED       12     33     22     33     17
  AMP PEAK 14(7Q31.2) WILD-TYPE     32     62     34     89     31
D14V6, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          33                            62
  CLUS_3                          22                            34
  CLUS_4                          33                            89
  CLUS_5                          17                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q31.2) MUTATED       33     25     35     12
  AMP PEAK 14(7Q31.2) WILD-TYPE     59     62     84     30
D14V7, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          33                            59
  CLUS_2                          25                            62
  CLUS_3                          35                            84
  CLUS_4                          12                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q31.2) MUTATED       26     24     27      9     19
  AMP PEAK 14(7Q31.2) WILD-TYPE     41     62     72     26     34
D14V8, multiclass
        clus
vv       AMP PEAK 14(7Q31.2) MUTATED AMP PEAK 14(7Q31.2) WILD-TYPE
  CLUS_1                          26                            41
  CLUS_2                          24                            62
  CLUS_3                          27                            72
  CLUS_4                           9                            26
  CLUS_5                          19                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q13.3) MUTATED      105     68     34
  AMP PEAK 15(8Q13.3) WILD-TYPE      4     56    103
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                         105                             4
  CLUS_2                          68                            56
  CLUS_3                          34                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q13.3) MUTATED       47     87     73
  AMP PEAK 15(8Q13.3) WILD-TYPE     41     80     42
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          47                            41
  CLUS_2                          87                            80
  CLUS_3                          73                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q13.3) MUTATED       40     33     45     40     44
  AMP PEAK 15(8Q13.3) WILD-TYPE     21     64     23     29     25
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          40                            21
  CLUS_2                          33                            64
  CLUS_3                          45                            23
  CLUS_4                          40                            29
  CLUS_5                          44                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q13.3) MUTATED       33     36     41     56     36
  AMP PEAK 15(8Q13.3) WILD-TYPE     21     20     73     28     20
D15V4, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          33                            21
  CLUS_2                          36                            20
  CLUS_3                          41                            73
  CLUS_4                          56                            28
  CLUS_5                          36                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q13.3) MUTATED       27     75     29     72
  AMP PEAK 15(8Q13.3) WILD-TYPE     38     52     20     52
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          27                            38
  CLUS_2                          75                            52
  CLUS_3                          29                            20
  CLUS_4                          72                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q13.3) MUTATED       23     37     34     77     32
  AMP PEAK 15(8Q13.3) WILD-TYPE     21     58     22     45     16
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          23                            21
  CLUS_2                          37                            58
  CLUS_3                          34                            22
  CLUS_4                          77                            45
  CLUS_5                          32                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q13.3) MUTATED       59     50     57     29
  AMP PEAK 15(8Q13.3) WILD-TYPE     33     37     62     13
D15V7, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          59                            33
  CLUS_2                          50                            37
  CLUS_3                          57                            62
  CLUS_4                          29                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q13.3) MUTATED       49     32     61     16     37
  AMP PEAK 15(8Q13.3) WILD-TYPE     18     54     38     19     16
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q13.3) MUTATED AMP PEAK 15(8Q13.3) WILD-TYPE
  CLUS_1                          49                            18
  CLUS_2                          32                            54
  CLUS_3                          61                            38
  CLUS_4                          16                            19
  CLUS_5                          37                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8Q24.21) MUTATED      105     80     46
  AMP PEAK 16(8Q24.21) WILD-TYPE      4     44     91
D16V1, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                          105                              4
  CLUS_2                           80                             44
  CLUS_3                           46                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8Q24.21) MUTATED       51     95     85
  AMP PEAK 16(8Q24.21) WILD-TYPE     37     72     30
D16V2, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           51                             37
  CLUS_2                           95                             72
  CLUS_3                           85                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8Q24.21) MUTATED       42     39     48     47     50
  AMP PEAK 16(8Q24.21) WILD-TYPE     19     58     20     22     19
D16V3, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           42                             19
  CLUS_2                           39                             58
  CLUS_3                           48                             20
  CLUS_4                           47                             22
  CLUS_5                           50                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8Q24.21) MUTATED       39     40     45     61     41
  AMP PEAK 16(8Q24.21) WILD-TYPE     15     16     69     23     15
D16V4, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           39                             15
  CLUS_2                           40                             16
  CLUS_3                           45                             69
  CLUS_4                           61                             23
  CLUS_5                           41                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(8Q24.21) MUTATED       29     83     31     84
  AMP PEAK 16(8Q24.21) WILD-TYPE     36     44     18     40
D16V5, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           29                             36
  CLUS_2                           83                             44
  CLUS_3                           31                             18
  CLUS_4                           84                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8Q24.21) MUTATED       24     46     37     85     35
  AMP PEAK 16(8Q24.21) WILD-TYPE     20     49     19     37     13
D16V6, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           24                             20
  CLUS_2                           46                             49
  CLUS_3                           37                             19
  CLUS_4                           85                             37
  CLUS_5                           35                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(8Q24.21) MUTATED       62     61     65     29
  AMP PEAK 16(8Q24.21) WILD-TYPE     30     26     54     13
D16V7, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           62                             30
  CLUS_2                           61                             26
  CLUS_3                           65                             54
  CLUS_4                           29                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8Q24.21) MUTATED       51     37     70     18     41
  AMP PEAK 16(8Q24.21) WILD-TYPE     16     49     29     17     12
D16V8, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           51                             16
  CLUS_2                           37                             49
  CLUS_3                           70                             29
  CLUS_4                           18                             17
  CLUS_5                           41                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9Q34.2) MUTATED       11     24     12
  AMP PEAK 17(9Q34.2) WILD-TYPE     98    100    125
D17V1, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          11                            98
  CLUS_2                          24                           100
  CLUS_3                          12                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9Q34.2) MUTATED        7     27     13
  AMP PEAK 17(9Q34.2) WILD-TYPE     81    140    102
D17V2, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                           7                            81
  CLUS_2                          27                           140
  CLUS_3                          13                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9Q34.2) MUTATED       10     16     12      5      3
  AMP PEAK 17(9Q34.2) WILD-TYPE     51     81     56     64     66
D17V3, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          10                            51
  CLUS_2                          16                            81
  CLUS_3                          12                            56
  CLUS_4                           5                            64
  CLUS_5                           3                            66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9Q34.2) MUTATED       10      5     17     12      2
  AMP PEAK 17(9Q34.2) WILD-TYPE     44     51     97     72     54
D17V4, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          10                            44
  CLUS_2                           5                            51
  CLUS_3                          17                            97
  CLUS_4                          12                            72
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9Q34.2) MUTATED       15     16      5     11
  AMP PEAK 17(9Q34.2) WILD-TYPE     50    111     44    113
D17V5, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          15                            50
  CLUS_2                          16                           111
  CLUS_3                           5                            44
  CLUS_4                          11                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9Q34.2) MUTATED       11     15      9     10      2
  AMP PEAK 17(9Q34.2) WILD-TYPE     33     80     47    112     46
D17V6, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          15                            80
  CLUS_3                           9                            47
  CLUS_4                          10                           112
  CLUS_5                           2                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9Q34.2) MUTATED       17     10     12      6
  AMP PEAK 17(9Q34.2) WILD-TYPE     75     77    107     36
D17V7, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          17                            75
  CLUS_2                          10                            77
  CLUS_3                          12                           107
  CLUS_4                           6                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9Q34.2) MUTATED       11     18      8      6      2
  AMP PEAK 17(9Q34.2) WILD-TYPE     56     68     91     29     51
D17V8, multiclass
        clus
vv       AMP PEAK 17(9Q34.2) MUTATED AMP PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                          18                            68
  CLUS_3                           8                            91
  CLUS_4                           6                            29
  CLUS_5                           2                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11Q13.3) MUTATED       12     22     23
  AMP PEAK 18(11Q13.3) WILD-TYPE     97    102    114
D18V1, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           12                             97
  CLUS_2                           22                            102
  CLUS_3                           23                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11Q13.3) MUTATED       13     29     15
  AMP PEAK 18(11Q13.3) WILD-TYPE     75    138    100
D18V2, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           13                             75
  CLUS_2                           29                            138
  CLUS_3                           15                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11Q13.3) MUTATED       15     20     10      6      4
  AMP PEAK 18(11Q13.3) WILD-TYPE     46     77     58     63     65
D18V3, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           20                             77
  CLUS_3                           10                             58
  CLUS_4                            6                             63
  CLUS_5                            4                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11Q13.3) MUTATED       10      7     25     11      2
  AMP PEAK 18(11Q13.3) WILD-TYPE     44     49     89     73     54
D18V4, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                            7                             49
  CLUS_3                           25                             89
  CLUS_4                           11                             73
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11Q13.3) MUTATED       18     12     10     17
  AMP PEAK 18(11Q13.3) WILD-TYPE     47    115     39    107
D18V5, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           12                            115
  CLUS_3                           10                             39
  CLUS_4                           17                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11Q13.3) MUTATED       11     23      5     16      2
  AMP PEAK 18(11Q13.3) WILD-TYPE     33     72     51    106     46
D18V6, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           23                             72
  CLUS_3                            5                             51
  CLUS_4                           16                            106
  CLUS_5                            2                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11Q13.3) MUTATED       19     12     14      9
  AMP PEAK 18(11Q13.3) WILD-TYPE     73     75    105     33
D18V7, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           19                             73
  CLUS_2                           12                             75
  CLUS_3                           14                            105
  CLUS_4                            9                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11Q13.3) MUTATED       12     19     13     10      0
  AMP PEAK 18(11Q13.3) WILD-TYPE     55     67     86     25     53
D18V8, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                           19                             67
  CLUS_3                           13                             86
  CLUS_4                           10                             25
  CLUS_5                            0                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(13Q32.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q32.3) MUTATED       11     47      9
  AMP PEAK 19(13Q32.3) WILD-TYPE     98     77    128
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           11                             98
  CLUS_2                           47                             77
  CLUS_3                            9                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q32.3) MUTATED       10     29     28
  AMP PEAK 19(13Q32.3) WILD-TYPE     78    138     87
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           10                             78
  CLUS_2                           29                            138
  CLUS_3                           28                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q32.3) MUTATED       14     15     21      8      8
  AMP PEAK 19(13Q32.3) WILD-TYPE     47     82     47     61     61
D19V3, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           14                             47
  CLUS_2                           15                             82
  CLUS_3                           21                             47
  CLUS_4                            8                             61
  CLUS_5                            8                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q32.3) MUTATED       13      5     23     19      6
  AMP PEAK 19(13Q32.3) WILD-TYPE     41     51     91     65     50
D19V4, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                            5                             51
  CLUS_3                           23                             91
  CLUS_4                           19                             65
  CLUS_5                            6                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(13Q32.3) MUTATED       14     20     14     19
  AMP PEAK 19(13Q32.3) WILD-TYPE     51    107     35    105
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           14                             51
  CLUS_2                           20                            107
  CLUS_3                           14                             35
  CLUS_4                           19                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q32.3) MUTATED       13     15     11     23      5
  AMP PEAK 19(13Q32.3) WILD-TYPE     31     80     45     99     43
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           15                             80
  CLUS_3                           11                             45
  CLUS_4                           23                             99
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(13Q32.3) MUTATED       26     13     14     10
  AMP PEAK 19(13Q32.3) WILD-TYPE     66     74    105     32
D19V7, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           26                             66
  CLUS_2                           13                             74
  CLUS_3                           14                            105
  CLUS_4                           10                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q32.3) MUTATED       19     13     17     10      4
  AMP PEAK 19(13Q32.3) WILD-TYPE     48     73     82     25     49
D19V8, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                           19                             48
  CLUS_2                           13                             73
  CLUS_3                           17                             82
  CLUS_4                           10                             25
  CLUS_5                            4                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(13Q33.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED       14     44      9
  AMP PEAK 20(13Q33.3) WILD-TYPE     95     80    128
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           14                             95
  CLUS_2                           44                             80
  CLUS_3                            9                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED        9     29     29
  AMP PEAK 20(13Q33.3) WILD-TYPE     79    138     86
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                            9                             79
  CLUS_2                           29                            138
  CLUS_3                           29                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q33.3) MUTATED       13     12     23      8     10
  AMP PEAK 20(13Q33.3) WILD-TYPE     48     85     45     61     59
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           13                             48
  CLUS_2                           12                             85
  CLUS_3                           23                             45
  CLUS_4                            8                             61
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q33.3) MUTATED       11      6     20     21      8
  AMP PEAK 20(13Q33.3) WILD-TYPE     43     50     94     63     48
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                            6                             50
  CLUS_3                           20                             94
  CLUS_4                           21                             63
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q33.3) MUTATED       14     21     14     18
  AMP PEAK 20(13Q33.3) WILD-TYPE     51    106     35    106
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           14                             51
  CLUS_2                           21                            106
  CLUS_3                           14                             35
  CLUS_4                           18                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q33.3) MUTATED       13     13     10     25      6
  AMP PEAK 20(13Q33.3) WILD-TYPE     31     82     46     97     42
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           13                             82
  CLUS_3                           10                             46
  CLUS_4                           25                             97
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q33.3) MUTATED       23     13     16     11
  AMP PEAK 20(13Q33.3) WILD-TYPE     69     74    103     31
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           23                             69
  CLUS_2                           13                             74
  CLUS_3                           16                            103
  CLUS_4                           11                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q33.3) MUTATED       18     12     18     10      5
  AMP PEAK 20(13Q33.3) WILD-TYPE     49     74     81     25     48
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           18                             49
  CLUS_2                           12                             74
  CLUS_3                           18                             81
  CLUS_4                           10                             25
  CLUS_5                            5                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED       12     27     15
  AMP PEAK 21(15Q26.3) WILD-TYPE     97     97    122
D21V1, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           12                             97
  CLUS_2                           27                             97
  CLUS_3                           15                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(15Q26.3) MUTATED        8     29     17
  AMP PEAK 21(15Q26.3) WILD-TYPE     80    138     98
D21V2, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            8                             80
  CLUS_2                           29                            138
  CLUS_3                           17                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(15Q26.3) MUTATED        8     16     17      7      5
  AMP PEAK 21(15Q26.3) WILD-TYPE     53     81     51     62     64
D21V3, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            8                             53
  CLUS_2                           16                             81
  CLUS_3                           17                             51
  CLUS_4                            7                             62
  CLUS_5                            5                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(15Q26.3) MUTATED        9      7     17     18      2
  AMP PEAK 21(15Q26.3) WILD-TYPE     45     49     97     66     54
D21V4, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            9                             45
  CLUS_2                            7                             49
  CLUS_3                           17                             97
  CLUS_4                           18                             66
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED        8     18      9     18
  AMP PEAK 21(15Q26.3) WILD-TYPE     57    109     40    106
D21V5, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                           18                            109
  CLUS_3                            9                             40
  CLUS_4                           18                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(15Q26.3) MUTATED        8     13      9     21      2
  AMP PEAK 21(15Q26.3) WILD-TYPE     36     82     47    101     46
D21V6, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           13                             82
  CLUS_3                            9                             47
  CLUS_4                           21                            101
  CLUS_5                            2                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(15Q26.3) MUTATED       16     14     12      8
  AMP PEAK 21(15Q26.3) WILD-TYPE     76     73    107     34
D21V7, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           16                             76
  CLUS_2                           14                             73
  CLUS_3                           12                            107
  CLUS_4                            8                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(15Q26.3) MUTATED       14     10     16      5      5
  AMP PEAK 21(15Q26.3) WILD-TYPE     53     76     83     30     48
D21V8, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           14                             53
  CLUS_2                           10                             76
  CLUS_3                           16                             83
  CLUS_4                            5                             30
  CLUS_5                            5                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17P11.2) MUTATED       14     20     12
  AMP PEAK 22(17P11.2) WILD-TYPE     95    104    125
D22V1, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           14                             95
  CLUS_2                           20                            104
  CLUS_3                           12                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17P11.2) MUTATED        4     23     19
  AMP PEAK 22(17P11.2) WILD-TYPE     84    144     96
D22V2, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            4                             84
  CLUS_2                           23                            144
  CLUS_3                           19                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17P11.2) MUTATED       11     12     10      5      7
  AMP PEAK 22(17P11.2) WILD-TYPE     50     85     58     64     62
D22V3, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                           12                             85
  CLUS_3                           10                             58
  CLUS_4                            5                             64
  CLUS_5                            7                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17P11.2) MUTATED        9      3     14     14      5
  AMP PEAK 22(17P11.2) WILD-TYPE     45     53    100     70     51
D22V4, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            9                             45
  CLUS_2                            3                             53
  CLUS_3                           14                            100
  CLUS_4                           14                             70
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17P11.2) MUTATED        6     25      6      9
  AMP PEAK 22(17P11.2) WILD-TYPE     59    102     43    115
D22V5, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                           25                            102
  CLUS_3                            6                             43
  CLUS_4                            9                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17P11.2) MUTATED        7     12     11     10      6
  AMP PEAK 22(17P11.2) WILD-TYPE     37     83     45    112     42
D22V6, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                           12                             83
  CLUS_3                           11                             45
  CLUS_4                           10                            112
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17P11.2) MUTATED       18      6     13      5
  AMP PEAK 22(17P11.2) WILD-TYPE     74     81    106     37
D22V7, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           18                             74
  CLUS_2                            6                             81
  CLUS_3                           13                            106
  CLUS_4                            5                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17P11.2) MUTATED       14     10      7      6      5
  AMP PEAK 22(17P11.2) WILD-TYPE     53     76     92     29     48
D22V8, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                           14                             53
  CLUS_2                           10                             76
  CLUS_3                            7                             92
  CLUS_4                            6                             29
  CLUS_5                            5                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       35     70     40
  AMP PEAK 23(17Q25.3) WILD-TYPE     74     54     97
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           35                             74
  CLUS_2                           70                             54
  CLUS_3                           40                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       25     77     43
  AMP PEAK 23(17Q25.3) WILD-TYPE     63     90     72
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           25                             63
  CLUS_2                           77                             90
  CLUS_3                           43                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q25.3) MUTATED       33     40     22     15     32
  AMP PEAK 23(17Q25.3) WILD-TYPE     28     57     46     54     37
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           33                             28
  CLUS_2                           40                             57
  CLUS_3                           22                             46
  CLUS_4                           15                             54
  CLUS_5                           32                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q25.3) MUTATED       28     12     49     29     24
  AMP PEAK 23(17Q25.3) WILD-TYPE     26     44     65     55     32
D23V4, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           28                             26
  CLUS_2                           12                             44
  CLUS_3                           49                             65
  CLUS_4                           29                             55
  CLUS_5                           24                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       29     65     15     35
  AMP PEAK 23(17Q25.3) WILD-TYPE     36     62     34     89
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           29                             36
  CLUS_2                           65                             62
  CLUS_3                           15                             34
  CLUS_4                           35                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q25.3) MUTATED       26     40     24     32     22
  AMP PEAK 23(17Q25.3) WILD-TYPE     18     55     32     90     26
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           26                             18
  CLUS_2                           40                             55
  CLUS_3                           24                             32
  CLUS_4                           32                             90
  CLUS_5                           22                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       46     26     51     13
  AMP PEAK 23(17Q25.3) WILD-TYPE     46     61     68     29
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           46                             46
  CLUS_2                           26                             61
  CLUS_3                           51                             68
  CLUS_4                           13                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q25.3) MUTATED       32     37     26     18     23
  AMP PEAK 23(17Q25.3) WILD-TYPE     35     49     73     17     30
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           32                             35
  CLUS_2                           37                             49
  CLUS_3                           26                             73
  CLUS_4                           18                             17
  CLUS_5                           23                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.12) MUTATED       26     25     18
  AMP PEAK 24(19P13.12) WILD-TYPE     83     99    119
D24V1, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                            26                              83
  CLUS_2                            25                              99
  CLUS_3                            18                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.12) MUTATED       14     19     36
  AMP PEAK 24(19P13.12) WILD-TYPE     74    148     79
D24V2, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                            14                              74
  CLUS_2                            19                             148
  CLUS_3                            36                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.12) MUTATED       12     11     20     21      4
  AMP PEAK 24(19P13.12) WILD-TYPE     49     86     48     48     65
D24V3, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                            12                              49
  CLUS_2                            11                              86
  CLUS_3                            20                              48
  CLUS_4                            21                              48
  CLUS_5                             4                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.12) MUTATED       16     13     12     23      4
  AMP PEAK 24(19P13.12) WILD-TYPE     38     43    102     61     52
D24V4, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                            13                              43
  CLUS_3                            12                             102
  CLUS_4                            23                              61
  CLUS_5                             4                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19P13.12) MUTATED        7     13      9     39
  AMP PEAK 24(19P13.12) WILD-TYPE     58    114     40     85
D24V5, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                             7                              58
  CLUS_2                            13                             114
  CLUS_3                             9                              40
  CLUS_4                            39                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.12) MUTATED        3     20     14     29      2
  AMP PEAK 24(19P13.12) WILD-TYPE     41     75     42     93     46
D24V6, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                             3                              41
  CLUS_2                            20                              75
  CLUS_3                            14                              42
  CLUS_4                            29                              93
  CLUS_5                             2                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19P13.12) MUTATED       23     23      9      9
  AMP PEAK 24(19P13.12) WILD-TYPE     69     64    110     33
D24V7, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                            23                              69
  CLUS_2                            23                              64
  CLUS_3                             9                             110
  CLUS_4                             9                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.12) MUTATED       17     15     27      2      3
  AMP PEAK 24(19P13.12) WILD-TYPE     50     71     72     33     50
D24V8, multiclass
        clus
vv       AMP PEAK 24(19P13.12) MUTATED AMP PEAK 24(19P13.12) WILD-TYPE
  CLUS_1                            17                              50
  CLUS_2                            15                              71
  CLUS_3                            27                              72
  CLUS_4                             2                              33
  CLUS_5                             3                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       23     34     21
  AMP PEAK 25(19Q12) WILD-TYPE     86     90    116
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         23                           86
  CLUS_2                         34                           90
  CLUS_3                         21                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       16     25     37
  AMP PEAK 25(19Q12) WILD-TYPE     72    142     78
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         16                           72
  CLUS_2                         25                          142
  CLUS_3                         37                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q12) MUTATED       13     17     21     21      5
  AMP PEAK 25(19Q12) WILD-TYPE     48     80     47     48     64
D25V3, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         13                           48
  CLUS_2                         17                           80
  CLUS_3                         21                           47
  CLUS_4                         21                           48
  CLUS_5                          5                           64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q12) MUTATED       14     16     17     26      4
  AMP PEAK 25(19Q12) WILD-TYPE     40     40     97     58     52
D25V4, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         14                           40
  CLUS_2                         16                           40
  CLUS_3                         17                           97
  CLUS_4                         26                           58
  CLUS_5                          4                           52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       14     14     10     39
  AMP PEAK 25(19Q12) WILD-TYPE     51    113     39     85
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         14                           51
  CLUS_2                         14                          113
  CLUS_3                         10                           39
  CLUS_4                         39                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q12) MUTATED       10     19     14     32      2
  AMP PEAK 25(19Q12) WILD-TYPE     34     76     42     90     46
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         19                           76
  CLUS_3                         14                           42
  CLUS_4                         32                           90
  CLUS_5                          2                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       24     27     11     10
  AMP PEAK 25(19Q12) WILD-TYPE     68     60    108     32
D25V7, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         24                           68
  CLUS_2                         27                           60
  CLUS_3                         11                          108
  CLUS_4                         10                           32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q12) MUTATED       16     17     29      8      2
  AMP PEAK 25(19Q12) WILD-TYPE     51     69     70     27     51
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         16                           51
  CLUS_2                         17                           69
  CLUS_3                         29                           70
  CLUS_4                          8                           27
  CLUS_5                          2                           51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q13.11) MUTATED       23     41     27
  AMP PEAK 26(19Q13.11) WILD-TYPE     86     83    110
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            23                              86
  CLUS_2                            41                              83
  CLUS_3                            27                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q13.11) MUTATED       20     34     37
  AMP PEAK 26(19Q13.11) WILD-TYPE     68    133     78
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            20                              68
  CLUS_2                            34                             133
  CLUS_3                            37                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q13.11) MUTATED       20     20     23     21      6
  AMP PEAK 26(19Q13.11) WILD-TYPE     41     77     45     48     63
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            20                              41
  CLUS_2                            20                              77
  CLUS_3                            23                              45
  CLUS_4                            21                              48
  CLUS_5                             6                              63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q13.11) MUTATED       16     17     21     31      5
  AMP PEAK 26(19Q13.11) WILD-TYPE     38     39     93     53     51
D26V4, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                            17                              39
  CLUS_3                            21                              93
  CLUS_4                            31                              53
  CLUS_5                             5                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.11) MUTATED       16     19     14     41
  AMP PEAK 26(19Q13.11) WILD-TYPE     49    108     35     83
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            16                              49
  CLUS_2                            19                             108
  CLUS_3                            14                              35
  CLUS_4                            41                              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q13.11) MUTATED       14     23     18     33      2
  AMP PEAK 26(19Q13.11) WILD-TYPE     30     72     38     89     46
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            14                              30
  CLUS_2                            23                              72
  CLUS_3                            18                              38
  CLUS_4                            33                              89
  CLUS_5                             2                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q13.11) MUTATED       32     27     11     15
  AMP PEAK 26(19Q13.11) WILD-TYPE     60     60    108     27
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            32                              60
  CLUS_2                            27                              60
  CLUS_3                            11                             108
  CLUS_4                            15                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q13.11) MUTATED       21     22     29     11      2
  AMP PEAK 26(19Q13.11) WILD-TYPE     46     64     70     24     51
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q13.11) MUTATED AMP PEAK 26(19Q13.11) WILD-TYPE
  CLUS_1                            21                              46
  CLUS_2                            22                              64
  CLUS_3                            29                              70
  CLUS_4                            11                              24
  CLUS_5                             2                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20Q13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.13) MUTATED       34     65     25
  AMP PEAK 27(20Q13.13) WILD-TYPE     75     59    112
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            34                              75
  CLUS_2                            65                              59
  CLUS_3                            25                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.13) MUTATED       24     59     41
  AMP PEAK 27(20Q13.13) WILD-TYPE     64    108     74
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            24                              64
  CLUS_2                            59                             108
  CLUS_3                            41                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.13) MUTATED       23     33     31     22     14
  AMP PEAK 27(20Q13.13) WILD-TYPE     38     64     37     47     55
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            23                              38
  CLUS_2                            33                              64
  CLUS_3                            31                              37
  CLUS_4                            22                              47
  CLUS_5                            14                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.13) MUTATED       19     19     37     41      7
  AMP PEAK 27(20Q13.13) WILD-TYPE     35     37     77     43     49
D27V4, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            19                              35
  CLUS_2                            19                              37
  CLUS_3                            37                              77
  CLUS_4                            41                              43
  CLUS_5                             7                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.13) MUTATED       25     38     23     37
  AMP PEAK 27(20Q13.13) WILD-TYPE     40     89     26     87
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            25                              40
  CLUS_2                            38                              89
  CLUS_3                            23                              26
  CLUS_4                            37                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.13) MUTATED       21     29     24     41      8
  AMP PEAK 27(20Q13.13) WILD-TYPE     23     66     32     81     40
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            21                              23
  CLUS_2                            29                              66
  CLUS_3                            24                              32
  CLUS_4                            41                              81
  CLUS_5                             8                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.13) MUTATED       41     27     23     25
  AMP PEAK 27(20Q13.13) WILD-TYPE     51     60     96     17
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            41                              51
  CLUS_2                            27                              60
  CLUS_3                            23                              96
  CLUS_4                            25                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.13) MUTATED       26     26     36     17     11
  AMP PEAK 27(20Q13.13) WILD-TYPE     41     60     63     18     42
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q13.13) MUTATED AMP PEAK 27(20Q13.13) WILD-TYPE
  CLUS_1                            26                              41
  CLUS_2                            26                              60
  CLUS_3                            36                              63
  CLUS_4                            17                              18
  CLUS_5                            11                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.33) MUTATED       35     66     27
  AMP PEAK 28(20Q13.33) WILD-TYPE     74     58    110
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            35                              74
  CLUS_2                            66                              58
  CLUS_3                            27                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.33) MUTATED       22     60     46
  AMP PEAK 28(20Q13.33) WILD-TYPE     66    107     69
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            22                              66
  CLUS_2                            60                             107
  CLUS_3                            46                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.33) MUTATED       22     34     35     21     15
  AMP PEAK 28(20Q13.33) WILD-TYPE     39     63     33     48     54
D28V3, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            22                              39
  CLUS_2                            34                              63
  CLUS_3                            35                              33
  CLUS_4                            21                              48
  CLUS_5                            15                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.33) MUTATED       21     17     39     43      7
  AMP PEAK 28(20Q13.33) WILD-TYPE     33     39     75     41     49
D28V4, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            21                              33
  CLUS_2                            17                              39
  CLUS_3                            39                              75
  CLUS_4                            43                              41
  CLUS_5                             7                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q13.33) MUTATED       25     40     23     39
  AMP PEAK 28(20Q13.33) WILD-TYPE     40     87     26     85
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            25                              40
  CLUS_2                            40                              87
  CLUS_3                            23                              26
  CLUS_4                            39                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.33) MUTATED       20     32     23     43      9
  AMP PEAK 28(20Q13.33) WILD-TYPE     24     63     33     79     39
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            20                              24
  CLUS_2                            32                              63
  CLUS_3                            23                              33
  CLUS_4                            43                              79
  CLUS_5                             9                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20Q13.33) MUTATED       42     27     26     25
  AMP PEAK 28(20Q13.33) WILD-TYPE     50     60     93     17
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            42                              50
  CLUS_2                            27                              60
  CLUS_3                            26                              93
  CLUS_4                            25                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.33) MUTATED       27     27     38     16     12
  AMP PEAK 28(20Q13.33) WILD-TYPE     40     59     61     19     41
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            27                              40
  CLUS_2                            27                              59
  CLUS_3                            38                              61
  CLUS_4                            16                              19
  CLUS_5                            12                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       41     25     19
  AMP PEAK 29(XQ28) WILD-TYPE     68     99    118
D29V1, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        41                          68
  CLUS_2                        25                          99
  CLUS_3                        19                         118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       12     47     26
  AMP PEAK 29(XQ28) WILD-TYPE     76    120     89
D29V2, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        12                          76
  CLUS_2                        47                         120
  CLUS_3                        26                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       12     25     11     12     25
  AMP PEAK 29(XQ28) WILD-TYPE     49     72     57     57     44
D29V3, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        12                          49
  CLUS_2                        25                          72
  CLUS_3                        11                          57
  CLUS_4                        12                          57
  CLUS_5                        25                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       12     11     30     11     21
  AMP PEAK 29(XQ28) WILD-TYPE     42     45     84     73     35
D29V4, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        12                          42
  CLUS_2                        11                          45
  CLUS_3                        30                          84
  CLUS_4                        11                          73
  CLUS_5                        21                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       10     42      7     25
  AMP PEAK 29(XQ28) WILD-TYPE     55     85     42     99
D29V5, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        10                          55
  CLUS_2                        42                          85
  CLUS_3                         7                          42
  CLUS_4                        25                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED        5     24     14     21     20
  AMP PEAK 29(XQ28) WILD-TYPE     39     71     42    101     28
D29V6, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                         5                          39
  CLUS_2                        24                          71
  CLUS_3                        14                          42
  CLUS_4                        21                         101
  CLUS_5                        20                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       21     15     36      5
  AMP PEAK 29(XQ28) WILD-TYPE     71     72     83     37
D29V7, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        21                          71
  CLUS_2                        15                          72
  CLUS_3                        36                          83
  CLUS_4                         5                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       16     20     16      2     23
  AMP PEAK 29(XQ28) WILD-TYPE     51     66     83     33     30
D29V8, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        16                          51
  CLUS_2                        20                          66
  CLUS_3                        16                          83
  CLUS_4                         2                          33
  CLUS_5                        23                          30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       47     69     46
  DEL PEAK  1(1P36.31) WILD-TYPE     62     55     91
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           47                             62
  CLUS_2                           69                             55
  CLUS_3                           46                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       25     64     73
  DEL PEAK  1(1P36.31) WILD-TYPE     63    103     42
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           25                             63
  CLUS_2                           64                            103
  CLUS_3                           73                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       17     35     57     31     19
  DEL PEAK  1(1P36.31) WILD-TYPE     44     62     11     38     50
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           35                             62
  CLUS_3                           57                             11
  CLUS_4                           31                             38
  CLUS_5                           19                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       24     24     40     57     14
  DEL PEAK  1(1P36.31) WILD-TYPE     30     32     74     27     42
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             30
  CLUS_2                           24                             32
  CLUS_3                           40                             74
  CLUS_4                           57                             27
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       21     52     21     65
  DEL PEAK  1(1P36.31) WILD-TYPE     44     75     28     59
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           52                             75
  CLUS_3                           21                             28
  CLUS_4                           65                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       14     37     31     65     12
  DEL PEAK  1(1P36.31) WILD-TYPE     30     58     25     57     36
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           37                             58
  CLUS_3                           31                             25
  CLUS_4                           65                             57
  CLUS_5                           12                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       48     40     39     23
  DEL PEAK  1(1P36.31) WILD-TYPE     44     47     80     19
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           48                             44
  CLUS_2                           40                             47
  CLUS_3                           39                             80
  CLUS_4                           23                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       31     36     56     12     15
  DEL PEAK  1(1P36.31) WILD-TYPE     36     50     43     23     38
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           31                             36
  CLUS_2                           36                             50
  CLUS_3                           56                             43
  CLUS_4                           12                             23
  CLUS_5                           15                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       40     66     36
  DEL PEAK  2(1P36.11) WILD-TYPE     69     58    101
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           40                             69
  CLUS_2                           66                             58
  CLUS_3                           36                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       22     49     71
  DEL PEAK  2(1P36.11) WILD-TYPE     66    118     44
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           22                             66
  CLUS_2                           49                            118
  CLUS_3                           71                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       16     26     56     24     18
  DEL PEAK  2(1P36.11) WILD-TYPE     45     71     12     45     51
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           26                             71
  CLUS_3                           56                             12
  CLUS_4                           24                             45
  CLUS_5                           18                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       22     19     31     54     14
  DEL PEAK  2(1P36.11) WILD-TYPE     32     37     83     30     42
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                           19                             37
  CLUS_3                           31                             83
  CLUS_4                           54                             30
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       13     46     21     59
  DEL PEAK  2(1P36.11) WILD-TYPE     52     81     28     65
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                           46                             81
  CLUS_3                           21                             28
  CLUS_4                           59                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        9     30     25     64     11
  DEL PEAK  2(1P36.11) WILD-TYPE     35     65     31     58     37
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           30                             65
  CLUS_3                           25                             31
  CLUS_4                           64                             58
  CLUS_5                           11                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       46     37     28     21
  DEL PEAK  2(1P36.11) WILD-TYPE     46     50     91     21
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           46                             46
  CLUS_2                           37                             50
  CLUS_3                           28                             91
  CLUS_4                           21                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       28     27     55      8     14
  DEL PEAK  2(1P36.11) WILD-TYPE     39     59     44     27     39
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           28                             39
  CLUS_2                           27                             59
  CLUS_3                           55                             44
  CLUS_4                            8                             27
  CLUS_5                           14                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       12     25     15
  DEL PEAK  3(2Q22.1) WILD-TYPE     97     99    122
D32V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          12                            97
  CLUS_2                          25                            99
  CLUS_3                          15                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        9     26     17
  DEL PEAK  3(2Q22.1) WILD-TYPE     79    141     98
D32V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            79
  CLUS_2                          26                           141
  CLUS_3                          17                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       15     16     12      7      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     46     81     56     62     67
D32V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          15                            46
  CLUS_2                          16                            81
  CLUS_3                          12                            56
  CLUS_4                           7                            62
  CLUS_5                           2                            67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        8      7     22     13      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     46     49     92     71     54
D32V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                           7                            49
  CLUS_3                          22                            92
  CLUS_4                          13                            71
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       14     18      4     15
  DEL PEAK  3(2Q22.1) WILD-TYPE     51    109     45    109
D32V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          14                            51
  CLUS_2                          18                           109
  CLUS_3                           4                            45
  CLUS_4                          15                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        9     13     12     13      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     35     82     44    109     44
D32V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          13                            82
  CLUS_3                          12                            44
  CLUS_4                          13                           109
  CLUS_5                           4                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       16     14     14      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     76     73    105     37
D32V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          16                            76
  CLUS_2                          14                            73
  CLUS_3                          14                           105
  CLUS_4                           5                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       13     11     12      9      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     54     75     87     26     49
D32V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          13                            54
  CLUS_2                          11                            75
  CLUS_3                          12                            87
  CLUS_4                           9                            26
  CLUS_5                           4                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       16     28     18
  DEL PEAK  4(2Q37.3) WILD-TYPE     93     96    119
D33V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          16                            93
  CLUS_2                          28                            96
  CLUS_3                          18                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       13     27     22
  DEL PEAK  4(2Q37.3) WILD-TYPE     75    140     93
D33V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                            75
  CLUS_2                          27                           140
  CLUS_3                          22                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       18     23     12      8      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     43     74     56     61     68
D33V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          18                            43
  CLUS_2                          23                            74
  CLUS_3                          12                            56
  CLUS_4                           8                            61
  CLUS_5                           1                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       12      9     28     12      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     42     47     86     72     55
D33V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                           9                            47
  CLUS_3                          28                            86
  CLUS_4                          12                            72
  CLUS_5                           1                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       15     26      3     17
  DEL PEAK  4(2Q37.3) WILD-TYPE     50    101     46    107
D33V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                            50
  CLUS_2                          26                           101
  CLUS_3                           3                            46
  CLUS_4                          17                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       11     16     16     15      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     33     79     40    107     45
D33V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          16                            79
  CLUS_3                          16                            40
  CLUS_4                          15                           107
  CLUS_5                           3                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       22     14     17      5
  DEL PEAK  4(2Q37.3) WILD-TYPE     70     73    102     37
D33V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          22                            70
  CLUS_2                          14                            73
  CLUS_3                          17                           102
  CLUS_4                           5                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       20     14     10     10      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     47     72     89     25     49
D33V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          20                            47
  CLUS_2                          14                            72
  CLUS_3                          10                            89
  CLUS_4                          10                            25
  CLUS_5                           4                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P13) MUTATED       14     36     23
  DEL PEAK  5(3P13) WILD-TYPE     95     88    114
D34V1, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        14                          95
  CLUS_2                        36                          88
  CLUS_3                        23                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P13) MUTATED       17     25     31
  DEL PEAK  5(3P13) WILD-TYPE     71    142     84
D34V2, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        17                          71
  CLUS_2                        25                         142
  CLUS_3                        31                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED       14     11     24     18      5
  DEL PEAK  5(3P13) WILD-TYPE     47     86     44     51     64
D34V3, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        14                          47
  CLUS_2                        11                          86
  CLUS_3                        24                          44
  CLUS_4                        18                          51
  CLUS_5                         5                          64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED       23      5     15     24      5
  DEL PEAK  5(3P13) WILD-TYPE     31     51     99     60     51
D34V4, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        23                          31
  CLUS_2                         5                          51
  CLUS_3                        15                          99
  CLUS_4                        24                          60
  CLUS_5                         5                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P13) MUTATED        5     20      9     37
  DEL PEAK  5(3P13) WILD-TYPE     60    107     40     87
D34V5, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                         5                          60
  CLUS_2                        20                         107
  CLUS_3                         9                          40
  CLUS_4                        37                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED        5     17     12     33      4
  DEL PEAK  5(3P13) WILD-TYPE     39     78     44     89     44
D34V6, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                         5                          39
  CLUS_2                        17                          78
  CLUS_3                        12                          44
  CLUS_4                        33                          89
  CLUS_5                         4                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P13) MUTATED       29     21     11      6
  DEL PEAK  5(3P13) WILD-TYPE     63     66    108     36
D34V7, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        29                          63
  CLUS_2                        21                          66
  CLUS_3                        11                         108
  CLUS_4                         6                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED       20     13     27      3      4
  DEL PEAK  5(3P13) WILD-TYPE     47     73     72     32     49
D34V8, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        20                          47
  CLUS_2                        13                          73
  CLUS_3                        27                          72
  CLUS_4                         3                          32
  CLUS_5                         4                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       21     48     16
  DEL PEAK  6(4P16.3) WILD-TYPE     88     76    121
D35V1, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          21                            88
  CLUS_2                          48                            76
  CLUS_3                          16                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       13     43     29
  DEL PEAK  6(4P16.3) WILD-TYPE     75    124     86
D35V2, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          13                            75
  CLUS_2                          43                           124
  CLUS_3                          29                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       18     23     19     13     10
  DEL PEAK  6(4P16.3) WILD-TYPE     43     74     49     56     59
D35V3, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          18                            43
  CLUS_2                          23                            74
  CLUS_3                          19                            49
  CLUS_4                          13                            56
  CLUS_5                          10                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       12      9     31     24      7
  DEL PEAK  6(4P16.3) WILD-TYPE     42     47     83     60     49
D35V4, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                           9                            47
  CLUS_3                          31                            83
  CLUS_4                          24                            60
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       12     28     12     32
  DEL PEAK  6(4P16.3) WILD-TYPE     53     99     37     92
D35V5, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          12                            53
  CLUS_2                          28                            99
  CLUS_3                          12                            37
  CLUS_4                          32                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED        6     20     20     32      6
  DEL PEAK  6(4P16.3) WILD-TYPE     38     75     36     90     42
D35V6, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                          20                            75
  CLUS_3                          20                            36
  CLUS_4                          32                            90
  CLUS_5                           6                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       30     20     19      9
  DEL PEAK  6(4P16.3) WILD-TYPE     62     67    100     33
D35V7, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          30                            62
  CLUS_2                          20                            67
  CLUS_3                          19                           100
  CLUS_4                           9                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       25     20     23      4      6
  DEL PEAK  6(4P16.3) WILD-TYPE     42     66     76     31     47
D35V8, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          25                            42
  CLUS_2                          20                            66
  CLUS_3                          23                            76
  CLUS_4                           4                            31
  CLUS_5                           6                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       38     93     40
  DEL PEAK  7(4Q21.3) WILD-TYPE     71     31     97
D36V1, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          38                            71
  CLUS_2                          93                            31
  CLUS_3                          40                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       33     70     68
  DEL PEAK  7(4Q21.3) WILD-TYPE     55     97     47
D36V2, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          33                            55
  CLUS_2                          70                            97
  CLUS_3                          68                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       37     44     51     21     16
  DEL PEAK  7(4Q21.3) WILD-TYPE     24     53     17     48     53
D36V3, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          37                            24
  CLUS_2                          44                            53
  CLUS_3                          51                            17
  CLUS_4                          21                            48
  CLUS_5                          16                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       28     22     55     51     13
  DEL PEAK  7(4Q21.3) WILD-TYPE     26     34     59     33     43
D36V4, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          22                            34
  CLUS_3                          55                            59
  CLUS_4                          51                            33
  CLUS_5                          13                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q21.3) MUTATED       28     53     29     60
  DEL PEAK  7(4Q21.3) WILD-TYPE     37     74     20     64
D36V5, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          28                            37
  CLUS_2                          53                            74
  CLUS_3                          29                            20
  CLUS_4                          60                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       20     45     32     63     10
  DEL PEAK  7(4Q21.3) WILD-TYPE     24     50     24     59     38
D36V6, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          20                            24
  CLUS_2                          45                            50
  CLUS_3                          32                            24
  CLUS_4                          63                            59
  CLUS_5                          10                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q21.3) MUTATED       56     38     40     29
  DEL PEAK  7(4Q21.3) WILD-TYPE     36     49     79     13
D36V7, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          56                            36
  CLUS_2                          38                            49
  CLUS_3                          40                            79
  CLUS_4                          29                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       41     43     52     15     12
  DEL PEAK  7(4Q21.3) WILD-TYPE     26     43     47     20     41
D36V8, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          41                            26
  CLUS_2                          43                            43
  CLUS_3                          52                            47
  CLUS_4                          15                            20
  CLUS_5                          12                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(4Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.3) MUTATED       39     94     39
  DEL PEAK  8(4Q22.3) WILD-TYPE     70     30     98
D37V1, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          39                            70
  CLUS_2                          94                            30
  CLUS_3                          39                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.3) MUTATED       33     71     68
  DEL PEAK  8(4Q22.3) WILD-TYPE     55     96     47
D37V2, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          33                            55
  CLUS_2                          71                            96
  CLUS_3                          68                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.3) MUTATED       36     44     51     21     17
  DEL PEAK  8(4Q22.3) WILD-TYPE     25     53     17     48     52
D37V3, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          36                            25
  CLUS_2                          44                            53
  CLUS_3                          51                            17
  CLUS_4                          21                            48
  CLUS_5                          17                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.3) MUTATED       28     22     54     52     13
  DEL PEAK  8(4Q22.3) WILD-TYPE     26     34     60     32     43
D37V4, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          22                            34
  CLUS_3                          54                            60
  CLUS_4                          52                            32
  CLUS_5                          13                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.3) MUTATED       29     53     29     60
  DEL PEAK  8(4Q22.3) WILD-TYPE     36     74     20     64
D37V5, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          29                            36
  CLUS_2                          53                            74
  CLUS_3                          29                            20
  CLUS_4                          60                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.3) MUTATED       22     43     32     64     10
  DEL PEAK  8(4Q22.3) WILD-TYPE     22     52     24     58     38
D37V6, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          22                            22
  CLUS_2                          43                            52
  CLUS_3                          32                            24
  CLUS_4                          64                            58
  CLUS_5                          10                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.3) MUTATED       55     38     42     29
  DEL PEAK  8(4Q22.3) WILD-TYPE     37     49     77     13
D37V7, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          55                            37
  CLUS_2                          38                            49
  CLUS_3                          42                            77
  CLUS_4                          29                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.3) MUTATED       41     42     52     17     12
  DEL PEAK  8(4Q22.3) WILD-TYPE     26     44     47     18     41
D37V8, multiclass
        clus
vv       DEL PEAK  8(4Q22.3) MUTATED DEL PEAK  8(4Q22.3) WILD-TYPE
  CLUS_1                          41                            26
  CLUS_2                          42                            44
  CLUS_3                          52                            47
  CLUS_4                          17                            18
  CLUS_5                          12                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       43     94     35
  DEL PEAK  9(4Q35.1) WILD-TYPE     66     30    102
D38V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          43                            66
  CLUS_2                          94                            30
  CLUS_3                          35                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       31     70     71
  DEL PEAK  9(4Q35.1) WILD-TYPE     57     97     44
D38V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          31                            57
  CLUS_2                          70                            97
  CLUS_3                          71                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       38     39     49     22     21
  DEL PEAK  9(4Q35.1) WILD-TYPE     23     58     19     47     48
D38V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          38                            23
  CLUS_2                          39                            58
  CLUS_3                          49                            19
  CLUS_4                          22                            47
  CLUS_5                          21                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       28     22     48     54     17
  DEL PEAK  9(4Q35.1) WILD-TYPE     26     34     66     30     39
D38V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          22                            34
  CLUS_3                          48                            66
  CLUS_4                          54                            30
  CLUS_5                          17                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       29     51     28     63
  DEL PEAK  9(4Q35.1) WILD-TYPE     36     76     21     61
D38V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          29                            36
  CLUS_2                          51                            76
  CLUS_3                          28                            21
  CLUS_4                          63                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       21     41     32     65     12
  DEL PEAK  9(4Q35.1) WILD-TYPE     23     54     24     57     36
D38V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          21                            23
  CLUS_2                          41                            54
  CLUS_3                          32                            24
  CLUS_4                          65                            57
  CLUS_5                          12                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       53     40     40     28
  DEL PEAK  9(4Q35.1) WILD-TYPE     39     47     79     14
D38V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          53                            39
  CLUS_2                          40                            47
  CLUS_3                          40                            79
  CLUS_4                          28                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       38     41     52     17     13
  DEL PEAK  9(4Q35.1) WILD-TYPE     29     45     47     18     40
D38V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          38                            29
  CLUS_2                          41                            45
  CLUS_3                          52                            47
  CLUS_4                          17                            18
  CLUS_5                          13                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q27) MUTATED       39     58     39
  DEL PEAK 10(6Q27) WILD-TYPE     70     66     98
D39V1, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        39                          70
  CLUS_2                        58                          66
  CLUS_3                        39                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q27) MUTATED       23     72     41
  DEL PEAK 10(6Q27) WILD-TYPE     65     95     74
D39V2, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        23                          65
  CLUS_2                        72                          95
  CLUS_3                        41                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       18     37     27     24     28
  DEL PEAK 10(6Q27) WILD-TYPE     43     60     41     45     41
D39V3, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        18                          43
  CLUS_2                        37                          60
  CLUS_3                        27                          41
  CLUS_4                        24                          45
  CLUS_5                        28                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       21     15     43     31     24
  DEL PEAK 10(6Q27) WILD-TYPE     33     41     71     53     32
D39V4, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        21                          33
  CLUS_2                        15                          41
  CLUS_3                        43                          71
  CLUS_4                        31                          53
  CLUS_5                        24                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q27) MUTATED       26     49     15     42
  DEL PEAK 10(6Q27) WILD-TYPE     39     78     34     82
D39V5, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        26                          39
  CLUS_2                        49                          78
  CLUS_3                        15                          34
  CLUS_4                        42                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       20     25     18     45     24
  DEL PEAK 10(6Q27) WILD-TYPE     24     70     38     77     24
D39V6, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        20                          24
  CLUS_2                        25                          70
  CLUS_3                        18                          38
  CLUS_4                        45                          77
  CLUS_5                        24                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q27) MUTATED       28     33     48     12
  DEL PEAK 10(6Q27) WILD-TYPE     64     54     71     30
D39V7, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        28                          64
  CLUS_2                        33                          54
  CLUS_3                        48                          71
  CLUS_4                        12                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       22     24     36     18     21
  DEL PEAK 10(6Q27) WILD-TYPE     45     62     63     17     32
D39V8, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        22                          45
  CLUS_2                        24                          62
  CLUS_3                        36                          63
  CLUS_4                        18                          17
  CLUS_5                        21                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P23.2) MUTATED      103     86     58
  DEL PEAK 11(8P23.2) WILD-TYPE      6     38     79
D40V1, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                         103                             6
  CLUS_2                          86                            38
  CLUS_3                          58                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P23.2) MUTATED       49    118     80
  DEL PEAK 11(8P23.2) WILD-TYPE     39     49     35
D40V2, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          49                            39
  CLUS_2                         118                            49
  CLUS_3                          80                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P23.2) MUTATED       45     59     51     41     45
  DEL PEAK 11(8P23.2) WILD-TYPE     16     38     17     28     24
D40V3, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          45                            16
  CLUS_2                          59                            38
  CLUS_3                          51                            17
  CLUS_4                          41                            28
  CLUS_5                          45                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P23.2) MUTATED       36     41     70     57     37
  DEL PEAK 11(8P23.2) WILD-TYPE     18     15     44     27     19
D40V4, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          36                            18
  CLUS_2                          41                            15
  CLUS_3                          70                            44
  CLUS_4                          57                            27
  CLUS_5                          37                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P23.2) MUTATED       45     81     28     89
  DEL PEAK 11(8P23.2) WILD-TYPE     20     46     21     35
D40V5, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          45                            20
  CLUS_2                          81                            46
  CLUS_3                          28                            21
  CLUS_4                          89                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P23.2) MUTATED       32     56     40     78     37
  DEL PEAK 11(8P23.2) WILD-TYPE     12     39     16     44     11
D40V6, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          32                            12
  CLUS_2                          56                            39
  CLUS_3                          40                            16
  CLUS_4                          78                            44
  CLUS_5                          37                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P23.2) MUTATED       67     59     78     24
  DEL PEAK 11(8P23.2) WILD-TYPE     25     28     41     18
D40V7, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          67                            25
  CLUS_2                          59                            28
  CLUS_3                          78                            41
  CLUS_4                          24                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P23.2) MUTATED       52     52     62     26     36
  DEL PEAK 11(8P23.2) WILD-TYPE     15     34     37      9     17
D40V8, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                          52                            15
  CLUS_2                          52                            34
  CLUS_3                          62                            37
  CLUS_4                          26                             9
  CLUS_5                          36                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(8P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P12) MUTATED      100     86     56
  DEL PEAK 12(8P12) WILD-TYPE      9     38     81
D41V1, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                       100                           9
  CLUS_2                        86                          38
  CLUS_3                        56                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P12) MUTATED       48    110     84
  DEL PEAK 12(8P12) WILD-TYPE     40     57     31
D41V2, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        48                          40
  CLUS_2                       110                          57
  CLUS_3                        84                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P12) MUTATED       41     57     52     41     46
  DEL PEAK 12(8P12) WILD-TYPE     20     40     16     28     23
D41V3, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        41                          20
  CLUS_2                        57                          40
  CLUS_3                        52                          16
  CLUS_4                        41                          28
  CLUS_5                        46                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P12) MUTATED       37     38     67     58     37
  DEL PEAK 12(8P12) WILD-TYPE     17     18     47     26     19
D41V4, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        37                          17
  CLUS_2                        38                          18
  CLUS_3                        67                          47
  CLUS_4                        58                          26
  CLUS_5                        37                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P12) MUTATED       47     79     27     85
  DEL PEAK 12(8P12) WILD-TYPE     18     48     22     39
D41V5, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        47                          18
  CLUS_2                        79                          48
  CLUS_3                        27                          22
  CLUS_4                        85                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P12) MUTATED       31     54     40     76     37
  DEL PEAK 12(8P12) WILD-TYPE     13     41     16     46     11
D41V6, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        31                          13
  CLUS_2                        54                          41
  CLUS_3                        40                          16
  CLUS_4                        76                          46
  CLUS_5                        37                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P12) MUTATED       67     58     73     25
  DEL PEAK 12(8P12) WILD-TYPE     25     29     46     17
D41V7, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        67                          25
  CLUS_2                        58                          29
  CLUS_3                        73                          46
  CLUS_4                        25                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P12) MUTATED       50     48     62     26     37
  DEL PEAK 12(8P12) WILD-TYPE     17     38     37      9     16
D41V8, multiclass
        clus
vv       DEL PEAK 12(8P12) MUTATED DEL PEAK 12(8P12) WILD-TYPE
  CLUS_1                        50                          17
  CLUS_2                        48                          38
  CLUS_3                        62                          37
  CLUS_4                        26                           9
  CLUS_5                        37                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED       40     70     40
  DEL PEAK 13(9P21.3) WILD-TYPE     69     54     97
D42V1, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          40                            69
  CLUS_2                          70                            54
  CLUS_3                          40                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED       29     61     60
  DEL PEAK 13(9P21.3) WILD-TYPE     59    106     55
D42V2, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          29                            59
  CLUS_2                          61                           106
  CLUS_3                          60                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       31     31     43     26     16
  DEL PEAK 13(9P21.3) WILD-TYPE     30     66     25     43     53
D42V3, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          31                            30
  CLUS_2                          31                            66
  CLUS_3                          43                            25
  CLUS_4                          26                            43
  CLUS_5                          16                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       28     20     38     46     15
  DEL PEAK 13(9P21.3) WILD-TYPE     26     36     76     38     41
D42V4, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          20                            36
  CLUS_3                          38                            76
  CLUS_4                          46                            38
  CLUS_5                          15                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       24     46     25     54
  DEL PEAK 13(9P21.3) WILD-TYPE     41     81     24     70
D42V5, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          24                            41
  CLUS_2                          46                            81
  CLUS_3                          25                            24
  CLUS_4                          54                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       20     31     29     59     10
  DEL PEAK 13(9P21.3) WILD-TYPE     24     64     27     63     38
D42V6, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          20                            24
  CLUS_2                          31                            64
  CLUS_3                          29                            27
  CLUS_4                          59                            63
  CLUS_5                          10                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       42     36     39     25
  DEL PEAK 13(9P21.3) WILD-TYPE     50     51     80     17
D42V7, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          42                            50
  CLUS_2                          36                            51
  CLUS_3                          39                            80
  CLUS_4                          25                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       37     29     47     15     14
  DEL PEAK 13(9P21.3) WILD-TYPE     30     57     52     20     39
D42V8, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          37                            30
  CLUS_2                          29                            57
  CLUS_3                          47                            52
  CLUS_4                          15                            20
  CLUS_5                          14                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(9Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q31.3) MUTATED       29     55     35
  DEL PEAK 14(9Q31.3) WILD-TYPE     80     69    102
D43V1, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          29                            80
  CLUS_2                          55                            69
  CLUS_3                          35                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q31.3) MUTATED       22     48     49
  DEL PEAK 14(9Q31.3) WILD-TYPE     66    119     66
D43V2, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          22                            66
  CLUS_2                          48                           119
  CLUS_3                          49                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9Q31.3) MUTATED       25     34     28     21     10
  DEL PEAK 14(9Q31.3) WILD-TYPE     36     63     40     48     59
D43V3, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          25                            36
  CLUS_2                          34                            63
  CLUS_3                          28                            40
  CLUS_4                          21                            48
  CLUS_5                          10                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9Q31.3) MUTATED       21     16     38     37      6
  DEL PEAK 14(9Q31.3) WILD-TYPE     33     40     76     47     50
D43V4, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          21                            33
  CLUS_2                          16                            40
  CLUS_3                          38                            76
  CLUS_4                          37                            47
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q31.3) MUTATED       24     32     14     46
  DEL PEAK 14(9Q31.3) WILD-TYPE     41     95     35     78
D43V5, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          24                            41
  CLUS_2                          32                            95
  CLUS_3                          14                            35
  CLUS_4                          46                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9Q31.3) MUTATED       17     30     21     43      5
  DEL PEAK 14(9Q31.3) WILD-TYPE     27     65     35     79     43
D43V6, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          17                            27
  CLUS_2                          30                            65
  CLUS_3                          21                            35
  CLUS_4                          43                            79
  CLUS_5                           5                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q31.3) MUTATED       34     33     28     16
  DEL PEAK 14(9Q31.3) WILD-TYPE     58     54     91     26
D43V7, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          34                            58
  CLUS_2                          33                            54
  CLUS_3                          28                            91
  CLUS_4                          16                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9Q31.3) MUTATED       28     26     36     16      5
  DEL PEAK 14(9Q31.3) WILD-TYPE     39     60     63     19     48
D43V8, multiclass
        clus
vv       DEL PEAK 14(9Q31.3) MUTATED DEL PEAK 14(9Q31.3) WILD-TYPE
  CLUS_1                          28                            39
  CLUS_2                          26                            60
  CLUS_3                          36                            63
  CLUS_4                          16                            19
  CLUS_5                           5                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       19     40     38
  DEL PEAK 15(10Q23.31) WILD-TYPE     90     84     99
D44V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            19                              90
  CLUS_2                            40                              84
  CLUS_3                            38                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       28     50     19
  DEL PEAK 15(10Q23.31) WILD-TYPE     60    117     96
D44V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            28                              60
  CLUS_2                            50                             117
  CLUS_3                            19                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.31) MUTATED       35     34      5     15      5
  DEL PEAK 15(10Q23.31) WILD-TYPE     26     63     63     54     64
D44V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            35                              26
  CLUS_2                            34                              63
  CLUS_3                             5                              63
  CLUS_4                            15                              54
  CLUS_5                             5                              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.31) MUTATED       27      9     41     11      6
  DEL PEAK 15(10Q23.31) WILD-TYPE     27     47     73     73     50
D44V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            27                              27
  CLUS_2                             9                              47
  CLUS_3                            41                              73
  CLUS_4                            11                              73
  CLUS_5                             6                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED       25     35      7     30
  DEL PEAK 15(10Q23.31) WILD-TYPE     40     92     42     94
D44V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            25                              40
  CLUS_2                            35                              92
  CLUS_3                             7                              42
  CLUS_4                            30                              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.31) MUTATED       15     41     13     25      3
  DEL PEAK 15(10Q23.31) WILD-TYPE     29     54     43     97     45
D44V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            15                              29
  CLUS_2                            41                              54
  CLUS_3                            13                              43
  CLUS_4                            25                              97
  CLUS_5                             3                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED       35     22     30      7
  DEL PEAK 15(10Q23.31) WILD-TYPE     57     65     89     35
D44V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            35                              57
  CLUS_2                            22                              65
  CLUS_3                            30                              89
  CLUS_4                             7                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.31) MUTATED       21     39     19     13      2
  DEL PEAK 15(10Q23.31) WILD-TYPE     46     47     80     22     51
D44V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            21                              46
  CLUS_2                            39                              47
  CLUS_3                            19                              80
  CLUS_4                            13                              22
  CLUS_5                             2                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(10Q26.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.13) MUTATED       19     41     45
  DEL PEAK 16(10Q26.13) WILD-TYPE     90     83     92
D45V1, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            19                              90
  CLUS_2                            41                              83
  CLUS_3                            45                              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q26.13) MUTATED       32     49     24
  DEL PEAK 16(10Q26.13) WILD-TYPE     56    118     91
D45V2, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            32                              56
  CLUS_2                            49                             118
  CLUS_3                            24                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q26.13) MUTATED       34     37      9     17      5
  DEL PEAK 16(10Q26.13) WILD-TYPE     27     60     59     52     64
D45V3, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            34                              27
  CLUS_2                            37                              60
  CLUS_3                             9                              59
  CLUS_4                            17                              52
  CLUS_5                             5                              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q26.13) MUTATED       30     11     41     14      6
  DEL PEAK 16(10Q26.13) WILD-TYPE     24     45     73     70     50
D45V4, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            30                              24
  CLUS_2                            11                              45
  CLUS_3                            41                              73
  CLUS_4                            14                              70
  CLUS_5                             6                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q26.13) MUTATED       25     36      9     35
  DEL PEAK 16(10Q26.13) WILD-TYPE     40     91     40     89
D45V5, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            25                              40
  CLUS_2                            36                              91
  CLUS_3                             9                              40
  CLUS_4                            35                              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q26.13) MUTATED       14     45     12     31      3
  DEL PEAK 16(10Q26.13) WILD-TYPE     30     50     44     91     45
D45V6, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            14                              30
  CLUS_2                            45                              50
  CLUS_3                            12                              44
  CLUS_4                            31                              91
  CLUS_5                             3                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q26.13) MUTATED       34     28     31      9
  DEL PEAK 16(10Q26.13) WILD-TYPE     58     59     88     33
D45V7, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            34                              58
  CLUS_2                            28                              59
  CLUS_3                            31                              88
  CLUS_4                             9                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q26.13) MUTATED       22     41     24     13      2
  DEL PEAK 16(10Q26.13) WILD-TYPE     45     45     75     22     51
D45V8, multiclass
        clus
vv       DEL PEAK 16(10Q26.13) MUTATED DEL PEAK 16(10Q26.13) WILD-TYPE
  CLUS_1                            22                              45
  CLUS_2                            41                              45
  CLUS_3                            24                              75
  CLUS_4                            13                              22
  CLUS_5                             2                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11Q14.1) MUTATED       22     36     19
  DEL PEAK 17(11Q14.1) WILD-TYPE     87     88    118
D46V1, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           22                             87
  CLUS_2                           36                             88
  CLUS_3                           19                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11Q14.1) MUTATED       18     38     21
  DEL PEAK 17(11Q14.1) WILD-TYPE     70    129     94
D46V2, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           18                             70
  CLUS_2                           38                            129
  CLUS_3                           21                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11Q14.1) MUTATED       19     16     18     11     12
  DEL PEAK 17(11Q14.1) WILD-TYPE     42     81     50     58     57
D46V3, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           19                             42
  CLUS_2                           16                             81
  CLUS_3                           18                             50
  CLUS_4                           11                             58
  CLUS_5                           12                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11Q14.1) MUTATED       14      7     24     23      8
  DEL PEAK 17(11Q14.1) WILD-TYPE     40     49     90     61     48
D46V4, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           14                             40
  CLUS_2                            7                             49
  CLUS_3                           24                             90
  CLUS_4                           23                             61
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q14.1) MUTATED       11     29     11     25
  DEL PEAK 17(11Q14.1) WILD-TYPE     54     98     38     99
D46V5, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                           29                             98
  CLUS_3                           11                             38
  CLUS_4                           25                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11Q14.1) MUTATED       10     21     17     21      7
  DEL PEAK 17(11Q14.1) WILD-TYPE     34     74     39    101     41
D46V6, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           21                             74
  CLUS_3                           17                             39
  CLUS_4                           21                            101
  CLUS_5                            7                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q14.1) MUTATED       33     12     16     10
  DEL PEAK 17(11Q14.1) WILD-TYPE     59     75    103     32
D46V7, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           33                             59
  CLUS_2                           12                             75
  CLUS_3                           16                            103
  CLUS_4                           10                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11Q14.1) MUTATED       23     21     15      6      6
  DEL PEAK 17(11Q14.1) WILD-TYPE     44     65     84     29     47
D46V8, multiclass
        clus
vv       DEL PEAK 17(11Q14.1) MUTATED DEL PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           23                             44
  CLUS_2                           21                             65
  CLUS_3                           15                             84
  CLUS_4                            6                             29
  CLUS_5                            6                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(11Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q24.2) MUTATED       24     45     26
  DEL PEAK 18(11Q24.2) WILD-TYPE     85     79    111
D47V1, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           24                             85
  CLUS_2                           45                             79
  CLUS_3                           26                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q24.2) MUTATED       17     46     32
  DEL PEAK 18(11Q24.2) WILD-TYPE     71    121     83
D47V2, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           17                             71
  CLUS_2                           46                            121
  CLUS_3                           32                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q24.2) MUTATED       22     21     22     14     15
  DEL PEAK 18(11Q24.2) WILD-TYPE     39     76     46     55     54
D47V3, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           22                             39
  CLUS_2                           21                             76
  CLUS_3                           22                             46
  CLUS_4                           14                             55
  CLUS_5                           15                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q24.2) MUTATED       17      8     31     28     10
  DEL PEAK 18(11Q24.2) WILD-TYPE     37     48     83     56     46
D47V4, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                            8                             48
  CLUS_3                           31                             83
  CLUS_4                           28                             56
  CLUS_5                           10                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q24.2) MUTATED       11     34     13     36
  DEL PEAK 18(11Q24.2) WILD-TYPE     54     93     36     88
D47V5, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                           34                             93
  CLUS_3                           13                             36
  CLUS_4                           36                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q24.2) MUTATED        9     29     19     28      9
  DEL PEAK 18(11Q24.2) WILD-TYPE     35     66     37     94     39
D47V6, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           29                             66
  CLUS_3                           19                             37
  CLUS_4                           28                             94
  CLUS_5                            9                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q24.2) MUTATED       38     17     21     11
  DEL PEAK 18(11Q24.2) WILD-TYPE     54     70     98     31
D47V7, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           38                             54
  CLUS_2                           17                             70
  CLUS_3                           21                             98
  CLUS_4                           11                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q24.2) MUTATED       29     27     19      5      7
  DEL PEAK 18(11Q24.2) WILD-TYPE     38     59     80     30     46
D47V8, multiclass
        clus
vv       DEL PEAK 18(11Q24.2) MUTATED DEL PEAK 18(11Q24.2) WILD-TYPE
  CLUS_1                           29                             38
  CLUS_2                           27                             59
  CLUS_3                           19                             80
  CLUS_4                            5                             30
  CLUS_5                            7                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12P12.1) MUTATED       16     41     21
  DEL PEAK 19(12P12.1) WILD-TYPE     93     83    116
D48V1, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           16                             93
  CLUS_2                           41                             83
  CLUS_3                           21                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12P12.1) MUTATED       18     42     18
  DEL PEAK 19(12P12.1) WILD-TYPE     70    125     97
D48V2, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           18                             70
  CLUS_2                           42                            125
  CLUS_3                           18                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(12P12.1) MUTATED       24     24     10     10     10
  DEL PEAK 19(12P12.1) WILD-TYPE     37     73     58     59     59
D48V3, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           24                             37
  CLUS_2                           24                             73
  CLUS_3                           10                             58
  CLUS_4                           10                             59
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(12P12.1) MUTATED       16     16     22     15      9
  DEL PEAK 19(12P12.1) WILD-TYPE     38     40     92     69     47
D48V4, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                           16                             40
  CLUS_3                           22                             92
  CLUS_4                           15                             69
  CLUS_5                            9                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P12.1) MUTATED       20     24      9     23
  DEL PEAK 19(12P12.1) WILD-TYPE     45    103     40    101
D48V5, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           20                             45
  CLUS_2                           24                            103
  CLUS_3                            9                             40
  CLUS_4                           23                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(12P12.1) MUTATED       14     27      8     21      6
  DEL PEAK 19(12P12.1) WILD-TYPE     30     68     48    101     42
D48V6, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           27                             68
  CLUS_3                            8                             48
  CLUS_4                           21                            101
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P12.1) MUTATED       24     18     26      6
  DEL PEAK 19(12P12.1) WILD-TYPE     68     69     93     36
D48V7, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           24                             68
  CLUS_2                           18                             69
  CLUS_3                           26                             93
  CLUS_4                            6                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(12P12.1) MUTATED       11     26     16     11     10
  DEL PEAK 19(12P12.1) WILD-TYPE     56     60     83     24     43
D48V8, multiclass
        clus
vv       DEL PEAK 19(12P12.1) MUTATED DEL PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                           26                             60
  CLUS_3                           16                             83
  CLUS_4                           11                             24
  CLUS_5                           10                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q24.33) MUTATED        9     34     16
  DEL PEAK 20(12Q24.33) WILD-TYPE    100     90    121
D49V1, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                             9                             100
  CLUS_2                            34                              90
  CLUS_3                            16                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q24.33) MUTATED       13     29     17
  DEL PEAK 20(12Q24.33) WILD-TYPE     75    138     98
D49V2, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            13                              75
  CLUS_2                            29                             138
  CLUS_3                            17                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q24.33) MUTATED       12     17     10     10      8
  DEL PEAK 20(12Q24.33) WILD-TYPE     49     80     58     59     61
D49V3, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            12                              49
  CLUS_2                            17                              80
  CLUS_3                            10                              58
  CLUS_4                            10                              59
  CLUS_5                             8                              61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q24.33) MUTATED        9     11     17     12      8
  DEL PEAK 20(12Q24.33) WILD-TYPE     45     45     97     72     48
D49V4, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                             9                              45
  CLUS_2                            11                              45
  CLUS_3                            17                              97
  CLUS_4                            12                              72
  CLUS_5                             8                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q24.33) MUTATED       12     19      6     21
  DEL PEAK 20(12Q24.33) WILD-TYPE     53    108     43    103
D49V5, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            12                              53
  CLUS_2                            19                             108
  CLUS_3                             6                              43
  CLUS_4                            21                             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q24.33) MUTATED        8     16      7     22      5
  DEL PEAK 20(12Q24.33) WILD-TYPE     36     79     49    100     43
D49V6, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                             8                              36
  CLUS_2                            16                              79
  CLUS_3                             7                              49
  CLUS_4                            22                             100
  CLUS_5                             5                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q24.33) MUTATED       14     17     18      6
  DEL PEAK 20(12Q24.33) WILD-TYPE     78     70    101     36
D49V7, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            14                              78
  CLUS_2                            17                              70
  CLUS_3                            18                             101
  CLUS_4                             6                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q24.33) MUTATED        6     19     16      6      8
  DEL PEAK 20(12Q24.33) WILD-TYPE     61     67     83     29     45
D49V8, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                             6                              61
  CLUS_2                            19                              67
  CLUS_3                            16                              83
  CLUS_4                             6                              29
  CLUS_5                             8                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       35     92     52
  DEL PEAK 21(13Q14.2) WILD-TYPE     74     32     85
D50V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           35                             74
  CLUS_2                           92                             32
  CLUS_3                           52                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       36     78     65
  DEL PEAK 21(13Q14.2) WILD-TYPE     52     89     50
D50V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           36                             52
  CLUS_2                           78                             89
  CLUS_3                           65                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       38     52     38     29     19
  DEL PEAK 21(13Q14.2) WILD-TYPE     23     45     30     40     50
D50V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           38                             23
  CLUS_2                           52                             45
  CLUS_3                           38                             30
  CLUS_4                           29                             40
  CLUS_5                           19                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       34     15     67     46     14
  DEL PEAK 21(13Q14.2) WILD-TYPE     20     41     47     38     42
D50V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           34                             20
  CLUS_2                           15                             41
  CLUS_3                           67                             47
  CLUS_4                           46                             38
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       41     49     19     68
  DEL PEAK 21(13Q14.2) WILD-TYPE     24     78     30     56
D50V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           41                             24
  CLUS_2                           49                             78
  CLUS_3                           19                             30
  CLUS_4                           68                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       28     53     26     59     11
  DEL PEAK 21(13Q14.2) WILD-TYPE     16     42     30     63     37
D50V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           28                             16
  CLUS_2                           53                             42
  CLUS_3                           26                             30
  CLUS_4                           59                             63
  CLUS_5                           11                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       54     45     50     19
  DEL PEAK 21(13Q14.2) WILD-TYPE     38     42     69     23
D50V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           54                             38
  CLUS_2                           45                             42
  CLUS_3                           50                             69
  CLUS_4                           19                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       38     51     45     22     12
  DEL PEAK 21(13Q14.2) WILD-TYPE     29     35     54     13     41
D50V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           38                             29
  CLUS_2                           51                             35
  CLUS_3                           45                             54
  CLUS_4                           22                             13
  CLUS_5                           12                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q23.3) MUTATED       21     78     32
  DEL PEAK 22(14Q23.3) WILD-TYPE     88     46    105
D51V1, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           21                             88
  CLUS_2                           78                             46
  CLUS_3                           32                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q23.3) MUTATED       27     58     46
  DEL PEAK 22(14Q23.3) WILD-TYPE     61    109     69
D51V2, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           27                             61
  CLUS_2                           58                            109
  CLUS_3                           46                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q23.3) MUTATED       36     25     28     23     17
  DEL PEAK 22(14Q23.3) WILD-TYPE     25     72     40     46     52
D51V3, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           36                             25
  CLUS_2                           25                             72
  CLUS_3                           28                             40
  CLUS_4                           23                             46
  CLUS_5                           17                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q23.3) MUTATED       34     12     38     32     13
  DEL PEAK 22(14Q23.3) WILD-TYPE     20     44     76     52     43
D51V4, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           34                             20
  CLUS_2                           12                             44
  CLUS_3                           38                             76
  CLUS_4                           32                             52
  CLUS_5                           13                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q23.3) MUTATED       25     43     16     46
  DEL PEAK 22(14Q23.3) WILD-TYPE     40     84     33     78
D51V5, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           25                             40
  CLUS_2                           43                             84
  CLUS_3                           16                             33
  CLUS_4                           46                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q23.3) MUTATED       22     32     22     43     11
  DEL PEAK 22(14Q23.3) WILD-TYPE     22     63     34     79     37
D51V6, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           22                             22
  CLUS_2                           32                             63
  CLUS_3                           22                             34
  CLUS_4                           43                             79
  CLUS_5                           11                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q23.3) MUTATED       47     31     33     14
  DEL PEAK 22(14Q23.3) WILD-TYPE     45     56     86     28
D51V7, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           47                             45
  CLUS_2                           31                             56
  CLUS_3                           33                             86
  CLUS_4                           14                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q23.3) MUTATED       30     26     37     18     14
  DEL PEAK 22(14Q23.3) WILD-TYPE     37     60     62     17     39
D51V8, multiclass
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  CLUS_1                           30                             37
  CLUS_2                           26                             60
  CLUS_3                           37                             62
  CLUS_4                           18                             17
  CLUS_5                           14                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q32.33) MUTATED       20     77     35
  DEL PEAK 23(14Q32.33) WILD-TYPE     89     47    102
D52V1, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            20                              89
  CLUS_2                            77                              47
  CLUS_3                            35                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q32.33) MUTATED       28     54     50
  DEL PEAK 23(14Q32.33) WILD-TYPE     60    113     65
D52V2, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            28                              60
  CLUS_2                            54                             113
  CLUS_3                            50                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q32.33) MUTATED       35     25     28     25     17
  DEL PEAK 23(14Q32.33) WILD-TYPE     26     72     40     44     52
D52V3, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            35                              26
  CLUS_2                            25                              72
  CLUS_3                            28                              40
  CLUS_4                            25                              44
  CLUS_5                            17                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q32.33) MUTATED       33     12     36     35     14
  DEL PEAK 23(14Q32.33) WILD-TYPE     21     44     78     49     42
D52V4, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            33                              21
  CLUS_2                            12                              44
  CLUS_3                            36                              78
  CLUS_4                            35                              49
  CLUS_5                            14                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q32.33) MUTATED       24     41     17     48
  DEL PEAK 23(14Q32.33) WILD-TYPE     41     86     32     76
D52V5, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            24                              41
  CLUS_2                            41                              86
  CLUS_3                            17                              32
  CLUS_4                            48                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q32.33) MUTATED       20     35     21     43     11
  DEL PEAK 23(14Q32.33) WILD-TYPE     24     60     35     79     37
D52V6, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            20                              24
  CLUS_2                            35                              60
  CLUS_3                            21                              35
  CLUS_4                            43                              79
  CLUS_5                            11                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q32.33) MUTATED       43     35     31     16
  DEL PEAK 23(14Q32.33) WILD-TYPE     49     52     88     26
D52V7, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            43                              49
  CLUS_2                            35                              52
  CLUS_3                            31                              88
  CLUS_4                            16                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q32.33) MUTATED       31     25     39     17     13
  DEL PEAK 23(14Q32.33) WILD-TYPE     36     61     60     18     40
D52V8, multiclass
        clus
vv       DEL PEAK 23(14Q32.33) MUTATED DEL PEAK 23(14Q32.33) WILD-TYPE
  CLUS_1                            31                              36
  CLUS_2                            25                              61
  CLUS_3                            39                              60
  CLUS_4                            17                              18
  CLUS_5                            13                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q26.3) MUTATED       17     36     26
  DEL PEAK 24(15Q26.3) WILD-TYPE     92     88    111
D53V1, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           17                             92
  CLUS_2                           36                             88
  CLUS_3                           26                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q26.3) MUTATED       19     30     30
  DEL PEAK 24(15Q26.3) WILD-TYPE     69    137     85
D53V2, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           19                             69
  CLUS_2                           30                            137
  CLUS_3                           30                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q26.3) MUTATED       24     18     16     11      9
  DEL PEAK 24(15Q26.3) WILD-TYPE     37     79     52     58     60
D53V3, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           24                             37
  CLUS_2                           18                             79
  CLUS_3                           16                             52
  CLUS_4                           11                             58
  CLUS_5                            9                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q26.3) MUTATED       21      6     22     19     10
  DEL PEAK 24(15Q26.3) WILD-TYPE     33     50     92     65     46
D53V4, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                            6                             50
  CLUS_3                           22                             92
  CLUS_4                           19                             65
  CLUS_5                           10                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(15Q26.3) MUTATED       11     27     15     25
  DEL PEAK 24(15Q26.3) WILD-TYPE     54    100     34     99
D53V5, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                           27                            100
  CLUS_3                           15                             34
  CLUS_4                           25                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q26.3) MUTATED        9     20     18     26      5
  DEL PEAK 24(15Q26.3) WILD-TYPE     35     75     38     96     43
D53V6, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           20                             75
  CLUS_3                           18                             38
  CLUS_4                           26                             96
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(15Q26.3) MUTATED       29     12     19     15
  DEL PEAK 24(15Q26.3) WILD-TYPE     63     75    100     27
D53V7, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           29                             63
  CLUS_2                           12                             75
  CLUS_3                           19                            100
  CLUS_4                           15                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q26.3) MUTATED       20     17     25      8      5
  DEL PEAK 24(15Q26.3) WILD-TYPE     47     69     74     27     48
D53V8, multiclass
        clus
vv       DEL PEAK 24(15Q26.3) MUTATED DEL PEAK 24(15Q26.3) WILD-TYPE
  CLUS_1                           20                             47
  CLUS_2                           17                             69
  CLUS_3                           25                             74
  CLUS_4                            8                             27
  CLUS_5                            5                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       45     78     39
  DEL PEAK 25(16Q23.1) WILD-TYPE     64     46     98
D54V1, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           45                             64
  CLUS_2                           78                             46
  CLUS_3                           39                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       28     60     74
  DEL PEAK 25(16Q23.1) WILD-TYPE     60    107     41
D54V2, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           28                             60
  CLUS_2                           60                            107
  CLUS_3                           74                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED       32     42     58     18     10
  DEL PEAK 25(16Q23.1) WILD-TYPE     29     55     10     51     59
D54V3, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           32                             29
  CLUS_2                           42                             55
  CLUS_3                           58                             10
  CLUS_4                           18                             51
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED       25     18     52     57      8
  DEL PEAK 25(16Q23.1) WILD-TYPE     29     38     62     27     48
D54V4, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           25                             29
  CLUS_2                           18                             38
  CLUS_3                           52                             62
  CLUS_4                           57                             27
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       26     53     24     57
  DEL PEAK 25(16Q23.1) WILD-TYPE     39     74     25     67
D54V5, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           26                             39
  CLUS_2                           53                             74
  CLUS_3                           24                             25
  CLUS_4                           57                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED       19     40     33     62      6
  DEL PEAK 25(16Q23.1) WILD-TYPE     25     55     23     60     42
D54V6, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           40                             55
  CLUS_3                           33                             23
  CLUS_4                           62                             60
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       54     36     36     28
  DEL PEAK 25(16Q23.1) WILD-TYPE     38     51     83     14
D54V7, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           54                             38
  CLUS_2                           36                             51
  CLUS_3                           36                             83
  CLUS_4                           28                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED       42     37     50     15     10
  DEL PEAK 25(16Q23.1) WILD-TYPE     25     49     49     20     43
D54V8, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           42                             25
  CLUS_2                           37                             49
  CLUS_3                           50                             49
  CLUS_4                           15                             20
  CLUS_5                           10                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P13.1) MUTATED       46    105     75
  DEL PEAK 26(17P13.1) WILD-TYPE     63     19     62
D55V1, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           46                             63
  CLUS_2                          105                             19
  CLUS_3                           75                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P13.1) MUTATED       48    115     63
  DEL PEAK 26(17P13.1) WILD-TYPE     40     52     52
D55V2, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           48                             40
  CLUS_2                          115                             52
  CLUS_3                           63                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P13.1) MUTATED       49     69     36     34     33
  DEL PEAK 26(17P13.1) WILD-TYPE     12     28     32     35     36
D55V3, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           49                             12
  CLUS_2                           69                             28
  CLUS_3                           36                             32
  CLUS_4                           34                             35
  CLUS_5                           33                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P13.1) MUTATED       40     28     85     42     26
  DEL PEAK 26(17P13.1) WILD-TYPE     14     28     29     42     30
D55V4, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           40                             14
  CLUS_2                           28                             28
  CLUS_3                           85                             29
  CLUS_4                           42                             42
  CLUS_5                           26                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED       53     76     27     68
  DEL PEAK 26(17P13.1) WILD-TYPE     12     51     22     56
D55V5, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           53                             12
  CLUS_2                           76                             51
  CLUS_3                           27                             22
  CLUS_4                           68                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P13.1) MUTATED       38     67     30     66     23
  DEL PEAK 26(17P13.1) WILD-TYPE      6     28     26     56     25
D55V6, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           38                              6
  CLUS_2                           67                             28
  CLUS_3                           30                             26
  CLUS_4                           66                             56
  CLUS_5                           23                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED       61     50     77     26
  DEL PEAK 26(17P13.1) WILD-TYPE     31     37     42     16
D55V7, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           61                             31
  CLUS_2                           50                             37
  CLUS_3                           77                             42
  CLUS_4                           26                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P13.1) MUTATED       36     67     55     31     25
  DEL PEAK 26(17P13.1) WILD-TYPE     31     19     44      4     28
D55V8, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           36                             31
  CLUS_2                           67                             19
  CLUS_3                           55                             44
  CLUS_4                           31                              4
  CLUS_5                           25                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17P11.2) MUTATED       40     90     65
  DEL PEAK 27(17P11.2) WILD-TYPE     69     34     72
D56V1, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           40                             69
  CLUS_2                           90                             34
  CLUS_3                           65                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17P11.2) MUTATED       44     97     54
  DEL PEAK 27(17P11.2) WILD-TYPE     44     70     61
D56V2, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           44                             44
  CLUS_2                           97                             70
  CLUS_3                           54                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       44     57     32     31     28
  DEL PEAK 27(17P11.2) WILD-TYPE     17     40     36     38     41
D56V3, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           44                             17
  CLUS_2                           57                             40
  CLUS_3                           32                             36
  CLUS_4                           31                             38
  CLUS_5                           28                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       37     27     68     37     23
  DEL PEAK 27(17P11.2) WILD-TYPE     17     29     46     47     33
D56V4, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           37                             17
  CLUS_2                           27                             29
  CLUS_3                           68                             46
  CLUS_4                           37                             47
  CLUS_5                           23                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17P11.2) MUTATED       51     61     22     59
  DEL PEAK 27(17P11.2) WILD-TYPE     14     66     27     65
D56V5, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           51                             14
  CLUS_2                           61                             66
  CLUS_3                           22                             27
  CLUS_4                           59                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       36     54     25     56     22
  DEL PEAK 27(17P11.2) WILD-TYPE      8     41     31     66     26
D56V6, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           36                              8
  CLUS_2                           54                             41
  CLUS_3                           25                             31
  CLUS_4                           56                             66
  CLUS_5                           22                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17P11.2) MUTATED       57     45     63     19
  DEL PEAK 27(17P11.2) WILD-TYPE     35     42     56     23
D56V7, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           57                             35
  CLUS_2                           45                             42
  CLUS_3                           63                             56
  CLUS_4                           19                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       32     54     47     29     22
  DEL PEAK 27(17P11.2) WILD-TYPE     35     32     52      6     31
D56V8, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           32                             35
  CLUS_2                           54                             32
  CLUS_3                           47                             52
  CLUS_4                           29                              6
  CLUS_5                           22                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       21     46     27
  DEL PEAK 28(18Q21.2) WILD-TYPE     88     78    110
D57V1, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           21                             88
  CLUS_2                           46                             78
  CLUS_3                           27                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       14     35     45
  DEL PEAK 28(18Q21.2) WILD-TYPE     74    132     70
D57V2, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           14                             74
  CLUS_2                           35                            132
  CLUS_3                           45                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED       15     24     25     13     17
  DEL PEAK 28(18Q21.2) WILD-TYPE     46     73     43     56     52
D57V3, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           24                             73
  CLUS_3                           25                             43
  CLUS_4                           13                             56
  CLUS_5                           17                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED        9      5     28     39     13
  DEL PEAK 28(18Q21.2) WILD-TYPE     45     51     86     45     43
D57V4, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                            9                             45
  CLUS_2                            5                             51
  CLUS_3                           28                             86
  CLUS_4                           39                             45
  CLUS_5                           13                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q21.2) MUTATED       10     37     10     36
  DEL PEAK 28(18Q21.2) WILD-TYPE     55     90     39     88
D57V5, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           10                             55
  CLUS_2                           37                             90
  CLUS_3                           10                             39
  CLUS_4                           36                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED        8     21     17     35     12
  DEL PEAK 28(18Q21.2) WILD-TYPE     36     74     39     87     36
D57V6, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           21                             74
  CLUS_3                           17                             39
  CLUS_4                           35                             87
  CLUS_5                           12                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q21.2) MUTATED       31     19     25     10
  DEL PEAK 28(18Q21.2) WILD-TYPE     61     68     94     32
D57V7, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           31                             61
  CLUS_2                           19                             68
  CLUS_3                           25                             94
  CLUS_4                           10                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED       23     17     27      7     11
  DEL PEAK 28(18Q21.2) WILD-TYPE     44     69     72     28     42
D57V8, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           23                             44
  CLUS_2                           17                             69
  CLUS_3                           27                             72
  CLUS_4                            7                             28
  CLUS_5                           11                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       18     51     18
  DEL PEAK 29(19P13.3) WILD-TYPE     91     73    119
D58V1, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           18                             91
  CLUS_2                           51                             73
  CLUS_3                           18                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       18     37     32
  DEL PEAK 29(19P13.3) WILD-TYPE     70    130     83
D58V2, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           18                             70
  CLUS_2                           37                            130
  CLUS_3                           32                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       29     18     15     12     12
  DEL PEAK 29(19P13.3) WILD-TYPE     32     79     53     57     57
D58V3, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           29                             32
  CLUS_2                           18                             79
  CLUS_3                           15                             53
  CLUS_4                           12                             57
  CLUS_5                           12                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       22      9     23     25      7
  DEL PEAK 29(19P13.3) WILD-TYPE     32     47     91     59     49
D58V4, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                            9                             47
  CLUS_3                           23                             91
  CLUS_4                           25                             59
  CLUS_5                            7                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       18     33     12     23
  DEL PEAK 29(19P13.3) WILD-TYPE     47     94     37    101
D58V5, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           33                             94
  CLUS_3                           12                             37
  CLUS_4                           23                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       16     24     15     23      8
  DEL PEAK 29(19P13.3) WILD-TYPE     28     71     41     99     40
D58V6, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           24                             71
  CLUS_3                           15                             41
  CLUS_4                           23                             99
  CLUS_5                            8                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       32     19     20     12
  DEL PEAK 29(19P13.3) WILD-TYPE     60     68     99     30
D58V7, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           32                             60
  CLUS_2                           19                             68
  CLUS_3                           20                             99
  CLUS_4                           12                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       25     21     18     13      6
  DEL PEAK 29(19P13.3) WILD-TYPE     42     65     81     22     47
D58V8, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           25                             42
  CLUS_2                           21                             65
  CLUS_3                           18                             81
  CLUS_4                           13                             22
  CLUS_5                            6                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED       12      4     13
  DEL PEAK 30(20P12.1) WILD-TYPE     97    120    124
D59V1, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                           12                             97
  CLUS_2                            4                            120
  CLUS_3                           13                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        8     11     10
  DEL PEAK 30(20P12.1) WILD-TYPE     80    156    105
D59V2, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            8                             80
  CLUS_2                           11                            156
  CLUS_3                           10                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(20P12.1) MUTATED        5      9      5      6      4
  DEL PEAK 30(20P12.1) WILD-TYPE     56     88     63     63     65
D59V3, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            5                             56
  CLUS_2                            9                             88
  CLUS_3                            5                             63
  CLUS_4                            6                             63
  CLUS_5                            4                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(20P12.1) MUTATED        6      3     10      8      2
  DEL PEAK 30(20P12.1) WILD-TYPE     48     53    104     76     54
D59V4, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            3                             53
  CLUS_3                           10                            104
  CLUS_4                            8                             76
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED        6     10      1     12
  DEL PEAK 30(20P12.1) WILD-TYPE     59    117     48    112
D59V5, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                           10                            117
  CLUS_3                            1                             48
  CLUS_4                           12                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(20P12.1) MUTATED        5      5      5     10      4
  DEL PEAK 30(20P12.1) WILD-TYPE     39     90     51    112     44
D59V6, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            5                             90
  CLUS_3                            5                             51
  CLUS_4                           10                            112
  CLUS_5                            4                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED        8      7     10      2
  DEL PEAK 30(20P12.1) WILD-TYPE     84     80    109     40
D59V7, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            8                             84
  CLUS_2                            7                             80
  CLUS_3                           10                            109
  CLUS_4                            2                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(20P12.1) MUTATED        7      4      8      5      3
  DEL PEAK 30(20P12.1) WILD-TYPE     60     82     91     30     50
D59V8, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            4                             82
  CLUS_3                            8                             91
  CLUS_4                            5                             30
  CLUS_5                            3                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(22Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q12.1) MUTATED       14     30     35
  DEL PEAK 31(22Q12.1) WILD-TYPE     95     94    102
D60V1, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           14                             95
  CLUS_2                           30                             94
  CLUS_3                           35                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q12.1) MUTATED       25     32     22
  DEL PEAK 31(22Q12.1) WILD-TYPE     63    135     93
D60V2, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           25                             63
  CLUS_2                           32                            135
  CLUS_3                           22                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q12.1) MUTATED       25     21      9     14     10
  DEL PEAK 31(22Q12.1) WILD-TYPE     36     76     59     55     59
D60V3, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           21                             76
  CLUS_3                            9                             59
  CLUS_4                           14                             55
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q12.1) MUTATED       16      7     29     19      8
  DEL PEAK 31(22Q12.1) WILD-TYPE     38     49     85     65     48
D60V4, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                            7                             49
  CLUS_3                           29                             85
  CLUS_4                           19                             65
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q12.1) MUTATED       17     32      9     20
  DEL PEAK 31(22Q12.1) WILD-TYPE     48     95     40    104
D60V5, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           17                             48
  CLUS_2                           32                             95
  CLUS_3                            9                             40
  CLUS_4                           20                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q12.1) MUTATED       13     19     14     27      5
  DEL PEAK 31(22Q12.1) WILD-TYPE     31     76     42     95     43
D60V6, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           19                             76
  CLUS_3                           14                             42
  CLUS_4                           27                             95
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q12.1) MUTATED       27     19     20      8
  DEL PEAK 31(22Q12.1) WILD-TYPE     65     68     99     34
D60V7, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           27                             65
  CLUS_2                           19                             68
  CLUS_3                           20                             99
  CLUS_4                            8                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q12.1) MUTATED       14     21     19     11      9
  DEL PEAK 31(22Q12.1) WILD-TYPE     53     65     80     24     44
D60V8, multiclass
        clus
vv       DEL PEAK 31(22Q12.1) MUTATED DEL PEAK 31(22Q12.1) WILD-TYPE
  CLUS_1                           14                             53
  CLUS_2                           21                             65
  CLUS_3                           19                             80
  CLUS_4                           11                             24
  CLUS_5                            9                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       13     33     37
  DEL PEAK 32(22Q13.32) WILD-TYPE     96     91    100
D61V1, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            13                              96
  CLUS_2                            33                              91
  CLUS_3                            37                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       26     39     18
  DEL PEAK 32(22Q13.32) WILD-TYPE     62    128     97
D61V2, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            26                              62
  CLUS_2                            39                             128
  CLUS_3                            18                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q13.32) MUTATED       27     27      7     12     10
  DEL PEAK 32(22Q13.32) WILD-TYPE     34     70     61     57     59
D61V3, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            27                              34
  CLUS_2                            27                              70
  CLUS_3                             7                              61
  CLUS_4                            12                              57
  CLUS_5                            10                              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q13.32) MUTATED       16      6     36     16      9
  DEL PEAK 32(22Q13.32) WILD-TYPE     38     50     78     68     47
D61V4, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                             6                              50
  CLUS_3                            36                              78
  CLUS_4                            16                              68
  CLUS_5                             9                              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       21     31      9     21
  DEL PEAK 32(22Q13.32) WILD-TYPE     44     96     40    103
D61V5, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            21                              44
  CLUS_2                            31                              96
  CLUS_3                             9                              40
  CLUS_4                            21                             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q13.32) MUTATED       13     25     13     25      6
  DEL PEAK 32(22Q13.32) WILD-TYPE     31     70     43     97     42
D61V6, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            13                              31
  CLUS_2                            25                              70
  CLUS_3                            13                              43
  CLUS_4                            25                              97
  CLUS_5                             6                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       29     18     25      7
  DEL PEAK 32(22Q13.32) WILD-TYPE     63     69     94     35
D61V7, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            29                              63
  CLUS_2                            18                              69
  CLUS_3                            25                              94
  CLUS_4                             7                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q13.32) MUTATED       14     27     17     11     10
  DEL PEAK 32(22Q13.32) WILD-TYPE     53     59     82     24     43
D61V8, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            14                              53
  CLUS_2                            27                              59
  CLUS_3                            17                              82
  CLUS_4                            11                              24
  CLUS_5                            10                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(XQ26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ26.2) MUTATED        8     39     20
  DEL PEAK 33(XQ26.2) WILD-TYPE    101     85    117
D62V1, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                           8                           101
  CLUS_2                          39                            85
  CLUS_3                          20                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ26.2) MUTATED        9     31     27
  DEL PEAK 33(XQ26.2) WILD-TYPE     79    136     88
D62V2, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                           9                            79
  CLUS_2                          31                           136
  CLUS_3                          27                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ26.2) MUTATED       13     20     16      9      9
  DEL PEAK 33(XQ26.2) WILD-TYPE     48     77     52     60     60
D62V3, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                          13                            48
  CLUS_2                          20                            77
  CLUS_3                          16                            52
  CLUS_4                           9                            60
  CLUS_5                           9                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ26.2) MUTATED       10      7     26     17      7
  DEL PEAK 33(XQ26.2) WILD-TYPE     44     49     88     67     49
D62V4, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                          10                            44
  CLUS_2                           7                            49
  CLUS_3                          26                            88
  CLUS_4                          17                            67
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ26.2) MUTATED       11     26      9     21
  DEL PEAK 33(XQ26.2) WILD-TYPE     54    101     40    103
D62V5, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                          26                           101
  CLUS_3                           9                            40
  CLUS_4                          21                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ26.2) MUTATED        7     20     13     20      7
  DEL PEAK 33(XQ26.2) WILD-TYPE     37     75     43    102     41
D62V6, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                          20                            75
  CLUS_3                          13                            43
  CLUS_4                          20                           102
  CLUS_5                           7                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ26.2) MUTATED       23     13     22      6
  DEL PEAK 33(XQ26.2) WILD-TYPE     69     74     97     36
D62V7, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                          23                            69
  CLUS_2                          13                            74
  CLUS_3                          22                            97
  CLUS_4                           6                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ26.2) MUTATED       15     16     18      7      8
  DEL PEAK 33(XQ26.2) WILD-TYPE     52     70     81     28     45
D62V8, multiclass
        clus
vv       DEL PEAK 33(XQ26.2) MUTATED DEL PEAK 33(XQ26.2) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                          16                            70
  CLUS_3                          18                            81
  CLUS_4                           7                            28
  CLUS_5                           8                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
