patient	chr	start	end	type	gene	Protein_Change	n_cos
PRAD-V1-A8MU-TP	7	140453134	140453134	Missense_Mutation	BRAF	p.K601E	14200
PRAD-CH-5772-TP	2	209113112	209113112	Missense_Mutation	IDH1	p.R132H	1492
PRAD-EJ-7125-TP	2	209113113	209113113	Missense_Mutation	IDH1	p.R132G	1492
PRAD-G9-7523-TP	2	209113112	209113112	Missense_Mutation	IDH1	p.R132H	1492
PRAD-G9-6499-TP	17	7578404	7578404	Missense_Mutation	TP53	p.C176R	865
PRAD-CH-5752-TP	3	41266136	41266136	Missense_Mutation	CTNNB1	p.S45P	660
PRAD-EJ-8469-TP	3	178936091	178936091	Missense_Mutation	PIK3CA	p.E545K	654
PRAD-HC-7212-TP	3	41266112	41266112	Missense_Mutation	CTNNB1	p.S37A	371
PRAD-VP-A87H-TP	3	41266101	41266101	Missense_Mutation	CTNNB1	p.S33Y	349
PRAD-HC-7081-TP	3	178936083	178936083	Missense_Mutation	PIK3CA	p.E542A	335
PRAD-EJ-5494-TP	3	41266098	41266098	Missense_Mutation	CTNNB1	p.D32V	311
PRAD-EJ-5525-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32H	258
PRAD-HC-8262-TP	3	41266097	41266097	Missense_Mutation	CTNNB1	p.D32Y	258
PRAD-EJ-A7NJ-TP	11	533874	533874	Missense_Mutation	HRAS	p.Q61R	208
PRAD-HI-7168-TP	11	533874	533874	Missense_Mutation	HRAS	p.Q61R	208
PRAD-VN-A88N-TP	11	533874	533874	Missense_Mutation	HRAS	p.Q61R	208
PRAD-HC-7231-TP	3	178936094	178936094	Missense_Mutation	PIK3CA	p.Q546K	198
PRAD-G9-7510-TP	17	7578271	7578271	Missense_Mutation	TP53	p.H193R	126
PRAD-YL-A9WH-TP	17	7577570	7577570	Missense_Mutation	TP53	p.M237I	124
PRAD-VP-A876-TP	17	7577126	7577126	Missense_Mutation	TP53	p.E271V	105
PRAD-EJ-A7NH-TP	17	7578443	7578443	Missense_Mutation	TP53	p.Y163H	93
PRAD-G9-7521-TP	17	7577085	7577085	Missense_Mutation	TP53	p.E285K	87
PRAD-HC-7742-TP	7	140453122	140453133	In_Frame_Del	BRAF	p.KSRW601del	85
PRAD-HC-7742-TP	17	7578222	7578223	Frame_Shift_Del	TP53	p.R209fs	69
PRAD-HI-7171-TP	17	7577566	7577566	Missense_Mutation	TP53	p.N239D	69
PRAD-EJ-A65E-TP	7	140481402	140481402	Missense_Mutation	BRAF	p.G469A	47
PRAD-XJ-A9DI-TP	17	7578413	7578413	Missense_Mutation	TP53	p.V173M	36
PRAD-XQ-A8TA-TP	3	10188250	10188250	Missense_Mutation	VHL	p.N131K	34
PRAD-KC-A4BN-TP	7	140453145	140453145	Missense_Mutation	BRAF	p.L597R	31
PRAD-EJ-7791-TP	10	89720811	89720812	Frame_Shift_Ins	PTEN	p.TK321fs	28
PRAD-HC-7078-TP	3	178921553	178921553	Missense_Mutation	PIK3CA	p.N345K	27
PRAD-HC-7081-TP	3	178921552	178921552	Missense_Mutation	PIK3CA	p.N345I	27
PRAD-HC-7213-TP	17	7578555	7578555	Splice_Site	TP53		26
PRAD-KK-A8II-TP	17	7578555	7578556	Splice_Site	TP53		23
PRAD-EJ-5526-TP	3	178927980	178927980	Missense_Mutation	PIK3CA	p.C420R	21
PRAD-FC-7961-TP	10	89717695	89717696	Frame_Shift_Ins	PTEN	p.F241fs	17
PRAD-J9-A8CK-TP	17	7577102	7577102	Missense_Mutation	TP53	p.G279E	17
PRAD-EJ-A46G-TP	3	10191575	10191575	Missense_Mutation	VHL	p.D190Y	13
PRAD-HC-7230-TP	10	89692849	89692849	Nonsense_Mutation	PTEN	p.W111*	13
PRAD-KK-A8I6-TP	10	89692911	89692911	Missense_Mutation	PTEN	p.G132V	13
PRAD-KK-A59X-TP	18	48591888	48591888	Missense_Mutation	SMAD4	p.D351Y	12
PRAD-ZG-A8QY-TP	7	140481405	140481405	Missense_Mutation	BRAF	p.F468C	12
PRAD-HC-7233-TP	5	114466299	114466299	Missense_Mutation	TRIM36	p.V608I	10
PRAD-CH-5737-TP	10	89692871	89692871	Missense_Mutation	PTEN	p.V119F	9
PRAD-HC-7212-TP	10	89720833	89720833	Frame_Shift_Del	PTEN	p.A328fs	8
PRAD-YL-A8SJ-TP	17	7578435	7578436	Frame_Shift_Ins	TP53	p.Q165fs	7
PRAD-2A-A8VT-TP	17	7579592	7579592	Splice_Site	TP53		5
PRAD-EJ-7781-TP	17	7576890	7576890	Frame_Shift_Del	TP53	p.K321fs	5
PRAD-VP-A87H-TP	12	121416600	121416600	Missense_Mutation	HNF1A	p.T10M	5
PRAD-YL-A9WI-TP	5	112175225	112175231	Frame_Shift_Del	APC	p.GTR1312fs	5
PRAD-KC-A7FA-TP	17	7576851	7576851	Splice_Site	TP53		4
PRAD-KK-A59X-TP	18	48591901	48591901	Missense_Mutation	SMAD4	p.D355V	4
PRAD-KK-A7B4-TP	17	7579315	7579316	Frame_Shift_Ins	TP53	p.C124fs	4
PRAD-CH-5740-TP	10	89720826	89720826	Missense_Mutation	PTEN	p.D326G	3
PRAD-CH-5791-TP	10	89690802	89690802	Splice_Site	PTEN		3
PRAD-CH-5739-TP	22	30057273	30057273	Missense_Mutation	NF2	p.P252H	2
PRAD-CH-5751-TP	19	16003198	16003198	Missense_Mutation	CYP4F2	p.R149Q	2
PRAD-EJ-7315-TP	18	48591894	48591894	Missense_Mutation	SMAD4	p.Y353N	2
PRAD-KC-A4BV-TP	10	89711886	89711887	Frame_Shift_Ins	PTEN	p.P169fs	2
PRAD-YL-A8HL-TP	17	7577514	7577514	Missense_Mutation	TP53	p.T256I	2
PRAD-2A-A8VO-TP	12	56482346	56482346	Missense_Mutation	ERBB3	p.Q298H	1
PRAD-CH-5739-TP	2	210518007	210518007	Missense_Mutation	MAP2	p.G38V	1
PRAD-CH-5739-TP	19	56243925	56243925	Missense_Mutation	NLRP9	p.E424D	1
PRAD-CH-5772-TP	10	50835688	50835688	Missense_Mutation	CHAT	p.R323H	1
PRAD-CH-5794-TP	22	30035110	30035110	Missense_Mutation	NF2	p.P91L	1
PRAD-EJ-5511-TP	1	210977309	210977309	Splice_Site	KCNH1	p.K554N	1
PRAD-EJ-5511-TP	11	108192065	108192065	Missense_Mutation	ATM	p.E2164K	1
PRAD-EJ-5518-TP	2	28117448	28117448	Nonsense_Mutation	BRE	p.R9*	1
PRAD-EJ-5525-TP	18	48604690	48604690	Missense_Mutation	SMAD4	p.S504R	1
PRAD-EJ-5525-TP	17	7578242	7578242	Frame_Shift_Del	TP53	p.V203fs	1
PRAD-EJ-5531-TP	16	20554289	20554289	Missense_Mutation	ACSM2B	p.P486S	1
PRAD-EJ-7317-TP	11	44100335	44100335	Splice_Site	ACCS		1
PRAD-G9-6351-TP	15	78893932	78893932	Missense_Mutation	CHRNA3	p.P351H	1
PRAD-HC-8216-TP	17	7578509	7578509	Missense_Mutation	TP53	p.C141G	1
PRAD-HC-A48F-TP	17	7578509	7578509	Missense_Mutation	TP53	p.C141G	1
PRAD-J4-A83M-TP	2	179635207	179635207	Missense_Mutation	TTN	p.I2771T	1
PRAD-XQ-A8TA-TP	5	112175856	112175856	Nonsense_Mutation	APC	p.L1522*	1
PRAD-ZG-A8QX-TP	11	64575501	64575501	Missense_Mutation	MEN1	p.D177E	1
