Loading MAF file: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSig_2CV/PRAD-TP/19849212/PRAD-TP.final_analysis_set.maf
Sorting MAF data ...
Processing MAF data ...
Loading chr01: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr01.txt
100 mutations processed.
200 mutations processed.
300 mutations processed.
400 mutations processed.
500 mutations processed.
600 mutations processed.
700 mutations processed.
800 mutations processed.
900 mutations processed.
1000 mutations processed.
1100 mutations processed.
1200 mutations processed.
1300 mutations processed.
Loading chr02: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr02.txt
1400 mutations processed.
1500 mutations processed.
1600 mutations processed.
1700 mutations processed.
1800 mutations processed.
1900 mutations processed.
2000 mutations processed.
2100 mutations processed.
Loading chr03: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr03.txt
2200 mutations processed.
2300 mutations processed.
2400 mutations processed.
2500 mutations processed.
2600 mutations processed.
2700 mutations processed.
2800 mutations processed.
2900 mutations processed.
Loading chr04: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr04.txt
3000 mutations processed.
3100 mutations processed.
3200 mutations processed.
3300 mutations processed.
Loading chr05: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr05.txt
3400 mutations processed.
3500 mutations processed.
3600 mutations processed.
3700 mutations processed.
3800 mutations processed.
3900 mutations processed.
Loading chr06: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr06.txt
4000 mutations processed.
4100 mutations processed.
4200 mutations processed.
4300 mutations processed.
4400 mutations processed.
4500 mutations processed.
4600 mutations processed.
Loading chr07: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr07.txt
4700 mutations processed.
4800 mutations processed.
4900 mutations processed.
5000 mutations processed.
5100 mutations processed.
Loading chr08: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr08.txt
5200 mutations processed.
5300 mutations processed.
5400 mutations processed.
5500 mutations processed.
5600 mutations processed.
Loading chr09: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr09.txt
5700 mutations processed.
5800 mutations processed.
5900 mutations processed.
6000 mutations processed.
Loading chr10: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr10.txt
6100 mutations processed.
6200 mutations processed.
6300 mutations processed.
6400 mutations processed.
6500 mutations processed.
Loading chr11: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr11.txt
6600 mutations processed.
6700 mutations processed.
6800 mutations processed.
6900 mutations processed.
7000 mutations processed.
7100 mutations processed.
7200 mutations processed.
7300 mutations processed.
Loading chr12: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr12.txt
7400 mutations processed.
7500 mutations processed.
7600 mutations processed.
7700 mutations processed.
7800 mutations processed.
7900 mutations processed.
Loading chr13: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr13.txt
8000 mutations processed.
8100 mutations processed.
Loading chr14: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr14.txt
8200 mutations processed.
8300 mutations processed.
8400 mutations processed.
8500 mutations processed.
Loading chr15: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr15.txt
8600 mutations processed.
8700 mutations processed.
8800 mutations processed.
8900 mutations processed.
Loading chr16: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr16.txt
9000 mutations processed.
9100 mutations processed.
9200 mutations processed.
9300 mutations processed.
Loading chr17: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr17.txt
9400 mutations processed.
9500 mutations processed.
9600 mutations processed.
9700 mutations processed.
9800 mutations processed.
9900 mutations processed.
10000 mutations processed.
Loading chr18: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr18.txt
10100 mutations processed.
10200 mutations processed.
Loading chr19: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr19.txt
10300 mutations processed.
10400 mutations processed.
10500 mutations processed.
10600 mutations processed.
10700 mutations processed.
10800 mutations processed.
10900 mutations processed.
Loading chr20: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr20.txt
11000 mutations processed.
11100 mutations processed.
11200 mutations processed.
Loading chr21: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr21.txt
11300 mutations processed.
Loading chr22: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr22.txt
11400 mutations processed.
11500 mutations processed.
11600 mutations processed.
11700 mutations processed.
11800 mutations processed.
11900 mutations processed.
11906 mutations processed.
