[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PATHOLOGIC_STAGE          "PATHOLOGIC_STAGE"         
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
PATHOLOGY_M_STAGE         "PATHOLOGY_M_STAGE"        
GENDER                    "GENDER"                   
RADIATION_THERAPY         "RADIATION_THERAPY"        
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
RESIDUAL_TUMOR            "RESIDUAL_TUMOR"           
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
RACE                      "RACE"                     
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=1"            
YEARS_TO_BIRTH            "Spearman correlation test" "N=7"            
PATHOLOGIC_STAGE          "Kruskal-Wallis test"       "N=7"            
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=0"            
PATHOLOGY_N_STAGE         "Spearman correlation test" "N=12"           
PATHOLOGY_M_STAGE         "Wilcoxon test"             "N=1"            
GENDER                    "Wilcoxon test"             "N=0"            
RADIATION_THERAPY         "Wilcoxon test"             "N=0"            
HISTOLOGICAL_TYPE         "Wilcoxon test"             "N=4"            
RESIDUAL_TUMOR            "Kruskal-Wallis test"       "N=0"            
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=15"           
RACE                      "Kruskal-Wallis test"       "N=0"            
                          Associated with                 
DAYS_TO_DEATH_OR_LAST_FUP "shorter survival"              
YEARS_TO_BIRTH            "older"                         
PATHOLOGIC_STAGE          " "                             
PATHOLOGY_T_STAGE         " "                             
PATHOLOGY_N_STAGE         "higher stage"                  
PATHOLOGY_M_STAGE         "class1"                        
GENDER                    " "                             
RADIATION_THERAPY         " "                             
HISTOLOGICAL_TYPE         "rectal mucinous adenocarcinoma"
RESIDUAL_TUMOR            " "                             
NUMBER_OF_LYMPH_NODES     "higher number_of_lymph_nodes"  
RACE                      " "                             
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP "N=1"                                                                                     
YEARS_TO_BIRTH            "N=4"                                                                                     
PATHOLOGIC_STAGE          " "                                                                                       
PATHOLOGY_T_STAGE         " "                                                                                       
PATHOLOGY_N_STAGE         "N=7"                                                                                     
PATHOLOGY_M_STAGE         "N=1"                                                                                     
GENDER                    " "                                                                                       
RADIATION_THERAPY         " "                                                                                       
HISTOLOGICAL_TYPE         "N=4"                                                                                     
RESIDUAL_TUMOR            " "                                                                                       
NUMBER_OF_LYMPH_NODES     "N=10"                                                                                    
RACE                      " "                                                                                       
                          Associated with                    
DAYS_TO_DEATH_OR_LAST_FUP "longer survival"             "N=0"
YEARS_TO_BIRTH            "younger"                     "N=3"
PATHOLOGIC_STAGE          " "                           " "  
PATHOLOGY_T_STAGE         " "                           " "  
PATHOLOGY_N_STAGE         "lower stage"                 "N=5"
PATHOLOGY_M_STAGE         "class0"                      "N=0"
GENDER                    " "                           " "  
RADIATION_THERAPY         " "                           " "  
HISTOLOGICAL_TYPE         "rectal adenocarcinoma"       "N=0"
RESIDUAL_TUMOR            " "                           " "  
NUMBER_OF_LYMPH_NODES     "lower number_of_lymph_nodes" "N=5"
RACE                      " "                           " "  
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
