[1] "ofn"        "-oTSTAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/20140953/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/19782340/transformed.cor.cli.txt"

nPatients in clinical file=443, in cluster file=441, common to both=441
[1]  89 441
[1] "AMP PEAK  1(1P36.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            66                            375 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            66                            375 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          160                           281 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          160                           281 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          150                           291 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          150                           291 
[1] "AMP PEAK  4(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          164                           277 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          164                           277 
[1] "AMP PEAK  5(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           130                            311 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           130                            311 
[1] "AMP PEAK  6(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          126                           315 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          126                           315 
[1] "AMP PEAK  7(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                          124                           317 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                          124                           317 
[1] "AMP PEAK  8(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         88                         353 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         88                         353 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         82                         359 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         82                         359 
[1] "AMP PEAK 10(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          229                           212 
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          229                           212 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          214                           227 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          214                           227 
[1] "AMP PEAK 12(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          204                           237 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          204                           237 
[1] "AMP PEAK 13(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE 
                          202                           239 
  AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE 
                          202                           239 
[1] "AMP PEAK 14(8P23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE 
                          177                           264 
  AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE 
                          177                           264 
[1] "AMP PEAK 15(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           309                            132 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           309                            132 
[1] "AMP PEAK 16(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE 
                           65                           376 
  AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE 
                           65                           376 
[1] "AMP PEAK 17(9P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE 
                           91                           350 
  AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE 
                           91                           350 
[1] "AMP PEAK 18(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE 
                          122                           319 
  AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE 
                          122                           319 
[1] "AMP PEAK 19(10P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE 
                            119                             322 
  AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE 
                            119                             322 
[1] "AMP PEAK 20(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE 
                            88                            353 
  AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE 
                            88                            353 
[1] "AMP PEAK 21(10Q26.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE 
                             88                             353 
  AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE 
                             88                             353 
[1] "AMP PEAK 22(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE 
                          88                          353 
  AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE 
                          88                          353 
[1] "AMP PEAK 23(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE 
                            92                            349 
  AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE 
                            92                            349 
[1] "AMP PEAK 24(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE 
                           115                            326 
  AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE 
                           115                            326 
[1] "AMP PEAK 25(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE 
                           128                            313 
  AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE 
                           128                            313 
[1] "AMP PEAK 26(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE 
                         109                          332 
  AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE 
                         109                          332 
[1] "AMP PEAK 27(13Q12.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE 
                           170                            271 
  AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE 
                           170                            271 
[1] "AMP PEAK 28(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE 
                           181                            260 
  AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE 
                           181                            260 
[1] "AMP PEAK 29(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE 
                           113                            328 
  AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE 
                           113                            328 
[1] "AMP PEAK 30(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE 
                         147                          294 
  AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE 
                         147                          294 
[1] "AMP PEAK 31(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE 
                           140                            301 
  AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE 
                           140                            301 
[1] "AMP PEAK 32(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE 
                            47                            394 
  AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE 
                            47                            394 
[1] "AMP PEAK 33(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE 
                         130                          311 
  AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE 
                         130                          311 
[1] "AMP PEAK 34(19Q13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE 
                            111                             330 
  AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE 
                            111                             330 
[1] "AMP PEAK 35(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE 
                           293                            148 
  AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE 
                           293                            148 
[1] "AMP PEAK 36(XQ27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE 
                           86                           355 
  AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE 
                           86                           355 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           135                            306 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           135                            306 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           94                           347 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           94                           347 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         30                         411 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         30                         411 
[1] "DEL PEAK  4(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE 
                         26                         415 
  DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE 
                         26                         415 
[1] "DEL PEAK  5(2Q32.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE 
                           64                           377 
  DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE 
                           64                           377 
[1] "DEL PEAK  6(2Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE 
                           49                           392 
  DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE 
                           49                           392 
[1] "DEL PEAK  7(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE 
                           72                           369 
  DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE 
                           72                           369 
[1] "DEL PEAK  8(3P26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE 
                          143                           298 
  DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE 
                          143                           298 
[1] "DEL PEAK  9(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          158                           283 
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          158                           283 
[1] "DEL PEAK 10(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            47                            394 
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            47                            394 
[1] "DEL PEAK 11(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          169                           272 
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          169                           272 
[1] "DEL PEAK 12(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          193                           248 
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          193                           248 
[1] "DEL PEAK 13(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                          200                           241 
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                          200                           241 
[1] "DEL PEAK 14(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          170                           271 
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          170                           271 
[1] "DEL PEAK 15(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE 
                          158                           283 
  DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE 
                          158                           283 
[1] "DEL PEAK 16(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                          115                           326 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                          115                           326 
[1] "DEL PEAK 17(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE 
                           89                           352 
  DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE 
                           89                           352 
[1] "DEL PEAK 18(6Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE 
                           78                           363 
  DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE 
                           78                           363 
[1] "DEL PEAK 19(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE 
                        102                         339 
  DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE 
                        102                         339 
[1] "DEL PEAK 20(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           71                           370 
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           71                           370 
[1] "DEL PEAK 21(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE 
                           98                           343 
  DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE 
                           98                           343 
[1] "DEL PEAK 22(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE 
                          126                           315 
  DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE 
                          126                           315 
[1] "DEL PEAK 23(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        195                         246 
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        195                         246 
[1] "DEL PEAK 24(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          193                           248 
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          193                           248 
[1] "DEL PEAK 25(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           114                            327 
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           114                            327 
[1] "DEL PEAK 26(10P12.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE 
                             67                             374 
  DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE 
                             67                             374 
[1] "DEL PEAK 27(10Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE 
                            79                            362 
  DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE 
                            79                            362 
[1] "DEL PEAK 28(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            116                             325 
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            116                             325 
[1] "DEL PEAK 29(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                            97                            344 
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                            97                            344 
[1] "DEL PEAK 30(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE 
                            99                            342 
  DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE 
                            99                            342 
[1] "DEL PEAK 31(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE 
                            77                            364 
  DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE 
                            77                            364 
[1] "DEL PEAK 32(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE 
                          59                          382 
  DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE 
                          59                          382 
[1] "DEL PEAK 33(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                             63                             378 
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                             63                             378 
[1] "DEL PEAK 34(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                           136                            305 
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                           136                            305 
[1] "DEL PEAK 35(14Q32.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                            133                             308 
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                            133                             308 
[1] "DEL PEAK 36(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           120                            321 
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           120                            321 
[1] "DEL PEAK 37(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           122                            319 
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           122                            319 
[1] "DEL PEAK 38(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                            93                            348 
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                            93                            348 
[1] "DEL PEAK 39(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           182                            259 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           182                            259 
[1] "DEL PEAK 40(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE 
                           176                            265 
  DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE 
                           176                            265 
[1] "DEL PEAK 41(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE 
                         181                          260 
  DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE 
                         181                          260 
[1] "DEL PEAK 42(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE 
                            76                            365 
  DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE 
                            76                            365 
[1] "DEL PEAK 43(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE 
                           181                            260 
  DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE 
                           181                            260 
[1] "DEL PEAK 44(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE 
                           204                            237 
  DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE 
                           204                            237 
[1] "DEL PEAK 45(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE 
                           162                            279 
  DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE 
                           162                            279 
[1] "DEL PEAK 46(19Q13.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE 
                             75                             366 
  DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE 
                             75                             366 
[1] "DEL PEAK 47(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            39                            402 
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            39                            402 
[1] "DEL PEAK 48(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE 
                           183                            258 
  DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE 
                           183                            258 
[1] "DEL PEAK 49(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE 
                           193                            248 
  DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE 
                           193                            248 
[1] "DEL PEAK 50(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE 
                            161                             280 
  DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE 
                            161                             280 
[1] "DEL PEAK 51(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE 
                           85                           356 
  DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE 
                           85                           356 
[1] "DEL PEAK 52(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE 
                           74                           367 
  DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE 
                           74                           367 
[1] "DEL PEAK 53(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE 
                            56                            385 
  DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE 
                            56                            385 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 441 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 441 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       38      6      4     16      2
  AMP PEAK  1(1P36.22) WILD-TYPE     85    181     32     60     17
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           38                             85
  CLUS_2                            6                            181
  CLUS_3                            4                             32
  CLUS_4                           16                             60
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       31     18      0      9
  AMP PEAK  1(1P36.22) WILD-TYPE     93    103     42     97
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           31                             93
  CLUS_2                           18                            103
  CLUS_3                            0                             42
  CLUS_4                            9                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED        3     20     16     10     10
  AMP PEAK  1(1P36.22) WILD-TYPE     27     72     66     83     49
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           20                             72
  CLUS_3                           16                             66
  CLUS_4                           10                             83
  CLUS_5                           10                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       26     10     14      9
  AMP PEAK  1(1P36.22) WILD-TYPE    114     48     64     71
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           10                             48
  CLUS_3                           14                             64
  CLUS_4                            9                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED        2      2      6      7     15
  AMP PEAK  1(1P36.22) WILD-TYPE     60     60     38     33     49
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                            2                             60
  CLUS_3                            6                             38
  CLUS_4                            7                             33
  CLUS_5                           15                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       15      1     16
  AMP PEAK  1(1P36.22) WILD-TYPE     95     56     89
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           15                             95
  CLUS_2                            1                             56
  CLUS_3                           16                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       26     12     27
  AMP PEAK  1(1P36.22) WILD-TYPE    146    118    105
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           26                            146
  CLUS_2                           12                            118
  CLUS_3                           27                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       34      4     27
  AMP PEAK  1(1P36.22) WILD-TYPE    209     78     82
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           34                            209
  CLUS_2                            4                             78
  CLUS_3                           27                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.22) MUTATED       18      9      6      7      4      5
  AMP PEAK  1(1P36.22) WILD-TYPE     55     48     53     53     29     54
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                            9                             48
  CLUS_3                            6                             53
  CLUS_4                            7                             53
  CLUS_5                            4                             29
  CLUS_6                            5                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.22) MUTATED       18      3      1     12      2     13
  AMP PEAK  1(1P36.22) WILD-TYPE     66     54     34     64     26     48
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           18                             66
  CLUS_2                            3                             54
  CLUS_3                            1                             34
  CLUS_4                           12                             64
  CLUS_5                            2                             26
  CLUS_6                           13                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       85     16     13     36     10
  AMP PEAK  2(1Q21.3) WILD-TYPE     38    171     23     40      9
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          85                            38
  CLUS_2                          16                           171
  CLUS_3                          13                            23
  CLUS_4                          36                            40
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       75     45      4     19
  AMP PEAK  2(1Q21.3) WILD-TYPE     49     76     38     87
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          75                            49
  CLUS_2                          45                            76
  CLUS_3                           4                            38
  CLUS_4                          19                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       10     37     35     22     26
  AMP PEAK  2(1Q21.3) WILD-TYPE     20     55     47     71     33
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          37                            55
  CLUS_3                          35                            47
  CLUS_4                          22                            71
  CLUS_5                          26                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       65     20     27     18
  AMP PEAK  2(1Q21.3) WILD-TYPE     75     38     51     62
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          65                            75
  CLUS_2                          20                            38
  CLUS_3                          27                            51
  CLUS_4                          18                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       11      9     14     15     49
  AMP PEAK  2(1Q21.3) WILD-TYPE     51     53     30     25     15
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          11                            51
  CLUS_2                           9                            53
  CLUS_3                          14                            30
  CLUS_4                          15                            25
  CLUS_5                          49                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       52      9     37
  AMP PEAK  2(1Q21.3) WILD-TYPE     58     48     68
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          52                            58
  CLUS_2                           9                            48
  CLUS_3                          37                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       50     29     78
  AMP PEAK  2(1Q21.3) WILD-TYPE    122    101     54
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          50                           122
  CLUS_2                          29                           101
  CLUS_3                          78                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       74     19     64
  AMP PEAK  2(1Q21.3) WILD-TYPE    169     63     45
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          74                           169
  CLUS_2                          19                            63
  CLUS_3                          64                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       46     18     15     16     12     12
  AMP PEAK  2(1Q21.3) WILD-TYPE     27     39     44     44     21     47
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          46                            27
  CLUS_2                          18                            39
  CLUS_3                          15                            44
  CLUS_4                          16                            44
  CLUS_5                          12                            21
  CLUS_6                          12                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       39      8      3     27      7     35
  AMP PEAK  2(1Q21.3) WILD-TYPE     45     49     32     49     21     26
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          39                            45
  CLUS_2                           8                            49
  CLUS_3                           3                            32
  CLUS_4                          27                            49
  CLUS_5                           7                            21
  CLUS_6                          35                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       80     18     11     33      8
  AMP PEAK  3(1Q42.3) WILD-TYPE     43    169     25     43     11
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          80                            43
  CLUS_2                          18                           169
  CLUS_3                          11                            25
  CLUS_4                          33                            43
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       70     36      5     23
  AMP PEAK  3(1Q42.3) WILD-TYPE     54     85     37     83
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          36                            85
  CLUS_3                           5                            37
  CLUS_4                          23                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       10     35     34     26     18
  AMP PEAK  3(1Q42.3) WILD-TYPE     20     57     48     67     41
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          35                            57
  CLUS_3                          34                            48
  CLUS_4                          26                            67
  CLUS_5                          18                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       62     15     29     17
  AMP PEAK  3(1Q42.3) WILD-TYPE     78     43     49     63
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          62                            78
  CLUS_2                          15                            43
  CLUS_3                          29                            49
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       12     12     10     13     44
  AMP PEAK  3(1Q42.3) WILD-TYPE     50     50     34     27     20
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          12                            50
  CLUS_2                          12                            50
  CLUS_3                          10                            34
  CLUS_4                          13                            27
  CLUS_5                          44                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       47     12     32
  AMP PEAK  3(1Q42.3) WILD-TYPE     63     45     73
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          47                            63
  CLUS_2                          12                            45
  CLUS_3                          32                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       37     35     76
  AMP PEAK  3(1Q42.3) WILD-TYPE    135     95     56
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          37                           135
  CLUS_2                          35                            95
  CLUS_3                          76                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       62     22     64
  AMP PEAK  3(1Q42.3) WILD-TYPE    181     60     45
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          62                           181
  CLUS_2                          22                            60
  CLUS_3                          64                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       44     10     17     17     13     13
  AMP PEAK  3(1Q42.3) WILD-TYPE     29     47     42     43     20     46
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          44                            29
  CLUS_2                          10                            47
  CLUS_3                          17                            42
  CLUS_4                          17                            43
  CLUS_5                          13                            20
  CLUS_6                          13                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       30     13      5     25      6     35
  AMP PEAK  3(1Q42.3) WILD-TYPE     54     44     30     51     22     26
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          30                            54
  CLUS_2                          13                            44
  CLUS_3                           5                            30
  CLUS_4                          25                            51
  CLUS_5                           6                            22
  CLUS_6                          35                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       64     32     11     44     13
  AMP PEAK  4(3Q26.2) WILD-TYPE     59    155     25     32      6
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          64                            59
  CLUS_2                          32                           155
  CLUS_3                          11                            25
  CLUS_4                          44                            32
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       65     36     16     29
  AMP PEAK  4(3Q26.2) WILD-TYPE     59     85     26     77
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          65                            59
  CLUS_2                          36                            85
  CLUS_3                          16                            26
  CLUS_4                          29                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       10     46     30     28     19
  AMP PEAK  4(3Q26.2) WILD-TYPE     20     46     52     65     40
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          46                            46
  CLUS_3                          30                            52
  CLUS_4                          28                            65
  CLUS_5                          19                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       57     13     33     30
  AMP PEAK  4(3Q26.2) WILD-TYPE     83     45     45     50
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          57                            83
  CLUS_2                          13                            45
  CLUS_3                          33                            45
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       22     18     19     10     22
  AMP PEAK  4(3Q26.2) WILD-TYPE     40     44     25     30     42
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          22                            40
  CLUS_2                          18                            44
  CLUS_3                          19                            25
  CLUS_4                          10                            30
  CLUS_5                          22                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       40     15     36
  AMP PEAK  4(3Q26.2) WILD-TYPE     70     42     69
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          40                            70
  CLUS_2                          15                            42
  CLUS_3                          36                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       59     39     64
  AMP PEAK  4(3Q26.2) WILD-TYPE    113     91     68
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          59                           113
  CLUS_2                          39                            91
  CLUS_3                          64                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       85     23     54
  AMP PEAK  4(3Q26.2) WILD-TYPE    158     59     55
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          85                           158
  CLUS_2                          23                            59
  CLUS_3                          54                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.2) MUTATED       40     21     20     18     12     12
  AMP PEAK  4(3Q26.2) WILD-TYPE     33     36     39     42     21     47
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          40                            33
  CLUS_2                          21                            36
  CLUS_3                          20                            39
  CLUS_4                          18                            42
  CLUS_5                          12                            21
  CLUS_6                          12                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.2) MUTATED       28     10     13     29      9     34
  AMP PEAK  4(3Q26.2) WILD-TYPE     56     47     22     47     19     27
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          28                            56
  CLUS_2                          10                            47
  CLUS_3                          13                            22
  CLUS_4                          29                            47
  CLUS_5                           9                            19
  CLUS_6                          34                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       77     18     10     20      5
  AMP PEAK  5(5P15.33) WILD-TYPE     46    169     26     56     14
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           77                             46
  CLUS_2                           18                            169
  CLUS_3                           10                             26
  CLUS_4                           20                             56
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED       70     22      7     18
  AMP PEAK  5(5P15.33) WILD-TYPE     54     99     35     88
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           70                             54
  CLUS_2                           22                             99
  CLUS_3                            7                             35
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED        7     28     28     14     17
  AMP PEAK  5(5P15.33) WILD-TYPE     23     64     54     79     42
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           28                             64
  CLUS_3                           28                             54
  CLUS_4                           14                             79
  CLUS_5                           17                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED       48     15     17     14
  AMP PEAK  5(5P15.33) WILD-TYPE     92     43     61     66
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           48                             92
  CLUS_2                           15                             43
  CLUS_3                           17                             61
  CLUS_4                           14                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       11      6      9     11     38
  AMP PEAK  5(5P15.33) WILD-TYPE     51     56     35     29     26
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           11                             51
  CLUS_2                            6                             56
  CLUS_3                            9                             35
  CLUS_4                           11                             29
  CLUS_5                           38                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       45      7     23
  AMP PEAK  5(5P15.33) WILD-TYPE     65     50     82
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           45                             65
  CLUS_2                            7                             50
  CLUS_3                           23                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       45     21     62
  AMP PEAK  5(5P15.33) WILD-TYPE    127    109     70
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           45                            127
  CLUS_2                           21                            109
  CLUS_3                           62                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       58     14     56
  AMP PEAK  5(5P15.33) WILD-TYPE    185     68     53
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           58                            185
  CLUS_2                           14                             68
  CLUS_3                           56                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       33     15     19     18     11      6
  AMP PEAK  5(5P15.33) WILD-TYPE     40     42     40     42     22     53
D5V9, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           33                             40
  CLUS_2                           15                             42
  CLUS_3                           19                             40
  CLUS_4                           18                             42
  CLUS_5                           11                             22
  CLUS_6                            6                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       29      4      6     26      5     32
  AMP PEAK  5(5P15.33) WILD-TYPE     55     53     29     50     23     29
D5V10, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           29                             55
  CLUS_2                            4                             53
  CLUS_3                            6                             29
  CLUS_4                           26                             50
  CLUS_5                            5                             23
  CLUS_6                           32                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       73     17     10     21      5
  AMP PEAK  6(5P13.1) WILD-TYPE     50    170     26     55     14
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          73                            50
  CLUS_2                          17                           170
  CLUS_3                          10                            26
  CLUS_4                          21                            55
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       61     23      7     20
  AMP PEAK  6(5P13.1) WILD-TYPE     63     98     35     86
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          61                            63
  CLUS_2                          23                            98
  CLUS_3                           7                            35
  CLUS_4                          20                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED        9     23     22     20     18
  AMP PEAK  6(5P13.1) WILD-TYPE     21     69     60     73     41
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                          23                            69
  CLUS_3                          22                            60
  CLUS_4                          20                            73
  CLUS_5                          18                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       45     12     15     20
  AMP PEAK  6(5P13.1) WILD-TYPE     95     46     63     60
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          45                            95
  CLUS_2                          12                            46
  CLUS_3                          15                            63
  CLUS_4                          20                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       11      8      9      9     38
  AMP PEAK  6(5P13.1) WILD-TYPE     51     54     35     31     26
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          11                            51
  CLUS_2                           8                            54
  CLUS_3                           9                            35
  CLUS_4                           9                            31
  CLUS_5                          38                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       43      8     24
  AMP PEAK  6(5P13.1) WILD-TYPE     67     49     81
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          43                            67
  CLUS_2                           8                            49
  CLUS_3                          24                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       41     26     58
  AMP PEAK  6(5P13.1) WILD-TYPE    131    104     74
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          41                           131
  CLUS_2                          26                           104
  CLUS_3                          58                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       53     17     55
  AMP PEAK  6(5P13.1) WILD-TYPE    190     65     54
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          53                           190
  CLUS_2                          17                            65
  CLUS_3                          55                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       29     14     16     20     11      9
  AMP PEAK  6(5P13.1) WILD-TYPE     44     43     43     40     22     50
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          29                            44
  CLUS_2                          14                            43
  CLUS_3                          16                            43
  CLUS_4                          20                            40
  CLUS_5                          11                            22
  CLUS_6                           9                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       22      8      5     29      5     30
  AMP PEAK  6(5P13.1) WILD-TYPE     62     49     30     47     23     31
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          22                            62
  CLUS_2                           8                            49
  CLUS_3                           5                            30
  CLUS_4                          29                            47
  CLUS_5                           5                            23
  CLUS_6                          30                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       79      8      5     25      7
  AMP PEAK  7(6P21.1) WILD-TYPE     44    179     31     51     12
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          79                            44
  CLUS_2                           8                           179
  CLUS_3                           5                            31
  CLUS_4                          25                            51
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       71     27      1      9
  AMP PEAK  7(6P21.1) WILD-TYPE     53     94     41     97
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          71                            53
  CLUS_2                          27                            94
  CLUS_3                           1                            41
  CLUS_4                           9                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       10     36     25     17     16
  AMP PEAK  7(6P21.1) WILD-TYPE     20     56     57     76     43
D7V3, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          36                            56
  CLUS_3                          25                            57
  CLUS_4                          17                            76
  CLUS_5                          16                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       47     13     28     16
  AMP PEAK  7(6P21.1) WILD-TYPE     93     45     50     64
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          47                            93
  CLUS_2                          13                            45
  CLUS_3                          28                            50
  CLUS_4                          16                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       10      9     10     11     31
  AMP PEAK  7(6P21.1) WILD-TYPE     52     53     34     29     33
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          10                            52
  CLUS_2                           9                            53
  CLUS_3                          10                            34
  CLUS_4                          11                            29
  CLUS_5                          31                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       37      9     25
  AMP PEAK  7(6P21.1) WILD-TYPE     73     48     80
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          37                            73
  CLUS_2                           9                            48
  CLUS_3                          25                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       43     19     60
  AMP PEAK  7(6P21.1) WILD-TYPE    129    111     72
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          43                           129
  CLUS_2                          19                           111
  CLUS_3                          60                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       58     11     53
  AMP PEAK  7(6P21.1) WILD-TYPE    185     71     56
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          58                           185
  CLUS_2                          11                            71
  CLUS_3                          53                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P21.1) MUTATED       37     11     13     19     10      8
  AMP PEAK  7(6P21.1) WILD-TYPE     36     46     46     41     23     51
D7V9, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          37                            36
  CLUS_2                          11                            46
  CLUS_3                          13                            46
  CLUS_4                          19                            41
  CLUS_5                          10                            23
  CLUS_6                           8                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P21.1) MUTATED       30      4      4     23      5     32
  AMP PEAK  7(6P21.1) WILD-TYPE     54     53     31     53     23     29
D7V10, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          30                            54
  CLUS_2                           4                            53
  CLUS_3                           4                            31
  CLUS_4                          23                            53
  CLUS_5                           5                            23
  CLUS_6                          32                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED       59      9      4     13      3
  AMP PEAK  8(6Q12) WILD-TYPE     64    178     32     63     16
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        59                          64
  CLUS_2                         9                         178
  CLUS_3                         4                          32
  CLUS_4                        13                          63
  CLUS_5                         3                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       48     18      1      7
  AMP PEAK  8(6Q12) WILD-TYPE     76    103     41     99
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        48                          76
  CLUS_2                        18                         103
  CLUS_3                         1                          41
  CLUS_4                         7                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED        5     25     20     11     10
  AMP PEAK  8(6Q12) WILD-TYPE     25     67     62     82     49
D8V3, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                        25                          67
  CLUS_3                        20                          62
  CLUS_4                        11                          82
  CLUS_5                        10                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       33     10     15     13
  AMP PEAK  8(6Q12) WILD-TYPE    107     48     63     67
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        33                         107
  CLUS_2                        10                          48
  CLUS_3                        15                          63
  CLUS_4                        13                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED        6      6      8      6     28
  AMP PEAK  8(6Q12) WILD-TYPE     56     56     36     34     36
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         6                          56
  CLUS_2                         6                          56
  CLUS_3                         8                          36
  CLUS_4                         6                          34
  CLUS_5                        28                          36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       31      4     19
  AMP PEAK  8(6Q12) WILD-TYPE     79     53     86
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        31                          79
  CLUS_2                         4                          53
  CLUS_3                        19                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       28     14     44
  AMP PEAK  8(6Q12) WILD-TYPE    144    116     88
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        28                         144
  CLUS_2                        14                         116
  CLUS_3                        44                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       39      9     38
  AMP PEAK  8(6Q12) WILD-TYPE    204     73     71
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        39                         204
  CLUS_2                         9                          73
  CLUS_3                        38                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q12) MUTATED       30      7      7      9      7      5
  AMP PEAK  8(6Q12) WILD-TYPE     43     50     52     51     26     54
D8V9, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        30                          43
  CLUS_2                         7                          50
  CLUS_3                         7                          52
  CLUS_4                         9                          51
  CLUS_5                         7                          26
  CLUS_6                         5                          54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q12) MUTATED       17      4      3     13      2     26
  AMP PEAK  8(6Q12) WILD-TYPE     67     53     32     63     26     35
D8V10, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        17                          67
  CLUS_2                         4                          53
  CLUS_3                         3                          32
  CLUS_4                        13                          63
  CLUS_5                         2                          26
  CLUS_6                        26                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       52      8      4     16      2
  AMP PEAK  9(6Q21) WILD-TYPE     71    179     32     60     17
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        52                          71
  CLUS_2                         8                         179
  CLUS_3                         4                          32
  CLUS_4                        16                          60
  CLUS_5                         2                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       42     18      1      8
  AMP PEAK  9(6Q21) WILD-TYPE     82    103     41     98
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        42                          82
  CLUS_2                        18                         103
  CLUS_3                         1                          41
  CLUS_4                         8                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        6     24     14     15     10
  AMP PEAK  9(6Q21) WILD-TYPE     24     68     68     78     49
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         6                          24
  CLUS_2                        24                          68
  CLUS_3                        14                          68
  CLUS_4                        15                          78
  CLUS_5                        10                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       28      8     19     14
  AMP PEAK  9(6Q21) WILD-TYPE    112     50     59     66
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        28                         112
  CLUS_2                         8                          50
  CLUS_3                        19                          59
  CLUS_4                        14                          66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        7      6      7      5     25
  AMP PEAK  9(6Q21) WILD-TYPE     55     56     37     35     39
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         7                          55
  CLUS_2                         6                          56
  CLUS_3                         7                          37
  CLUS_4                         5                          35
  CLUS_5                        25                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       30      3     17
  AMP PEAK  9(6Q21) WILD-TYPE     80     54     88
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        30                          80
  CLUS_2                         3                          54
  CLUS_3                        17                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       29     10     42
  AMP PEAK  9(6Q21) WILD-TYPE    143    120     90
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        29                         143
  CLUS_2                        10                         120
  CLUS_3                        42                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       36      6     39
  AMP PEAK  9(6Q21) WILD-TYPE    207     76     70
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        36                         207
  CLUS_2                         6                          76
  CLUS_3                        39                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       27      7      6      7      8      6
  AMP PEAK  9(6Q21) WILD-TYPE     46     50     53     53     25     53
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        27                          46
  CLUS_2                         7                          50
  CLUS_3                         6                          53
  CLUS_4                         7                          53
  CLUS_5                         8                          25
  CLUS_6                         6                          53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       17      3      1     15      0     25
  AMP PEAK  9(6Q21) WILD-TYPE     67     54     34     61     28     36
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        17                          67
  CLUS_2                         3                          54
  CLUS_3                         1                          34
  CLUS_4                        15                          61
  CLUS_5                         0                          28
  CLUS_6                        25                          36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       88     51     34     46     10
  AMP PEAK 10(7P22.1) WILD-TYPE     35    136      2     30      9
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          88                            35
  CLUS_2                          51                           136
  CLUS_3                          34                             2
  CLUS_4                          46                            30
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       83     68     19     34
  AMP PEAK 10(7P22.1) WILD-TYPE     41     53     23     72
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          83                            41
  CLUS_2                          68                            53
  CLUS_3                          19                            23
  CLUS_4                          34                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       18     49     45     42     30
  AMP PEAK 10(7P22.1) WILD-TYPE     12     43     37     51     29
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          49                            43
  CLUS_3                          45                            37
  CLUS_4                          42                            51
  CLUS_5                          30                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       81     30     38     35
  AMP PEAK 10(7P22.1) WILD-TYPE     59     28     40     45
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          81                            59
  CLUS_2                          30                            28
  CLUS_3                          38                            40
  CLUS_4                          35                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       27     25     15     23     46
  AMP PEAK 10(7P22.1) WILD-TYPE     35     37     29     17     18
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          27                            35
  CLUS_2                          25                            37
  CLUS_3                          15                            29
  CLUS_4                          23                            17
  CLUS_5                          46                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       64     21     51
  AMP PEAK 10(7P22.1) WILD-TYPE     46     36     54
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          64                            46
  CLUS_2                          21                            36
  CLUS_3                          51                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       89     52     83
  AMP PEAK 10(7P22.1) WILD-TYPE     83     78     49
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          89                            83
  CLUS_2                          52                            78
  CLUS_3                          83                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED      122     29     73
  AMP PEAK 10(7P22.1) WILD-TYPE    121     53     36
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                         122                           121
  CLUS_2                          29                            53
  CLUS_3                          73                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P22.1) MUTATED       45     28     29     30     19     23
  AMP PEAK 10(7P22.1) WILD-TYPE     28     29     30     30     14     36
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          45                            28
  CLUS_2                          28                            29
  CLUS_3                          29                            30
  CLUS_4                          30                            30
  CLUS_5                          19                            14
  CLUS_6                          23                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P22.1) MUTATED       46     16     13     45     15     39
  AMP PEAK 10(7P22.1) WILD-TYPE     38     41     22     31     13     22
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          46                            38
  CLUS_2                          16                            41
  CLUS_3                          13                            22
  CLUS_4                          45                            31
  CLUS_5                          15                            13
  CLUS_6                          39                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       74     48     35     46     11
  AMP PEAK 11(7P11.2) WILD-TYPE     49    139      1     30      8
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          74                            49
  CLUS_2                          48                           139
  CLUS_3                          35                             1
  CLUS_4                          46                            30
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       76     64     19     32
  AMP PEAK 11(7P11.2) WILD-TYPE     48     57     23     74
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          76                            48
  CLUS_2                          64                            57
  CLUS_3                          19                            23
  CLUS_4                          32                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       16     42     43     39     30
  AMP PEAK 11(7P11.2) WILD-TYPE     14     50     39     54     29
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          16                            14
  CLUS_2                          42                            50
  CLUS_3                          43                            39
  CLUS_4                          39                            54
  CLUS_5                          30                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       77     26     34     33
  AMP PEAK 11(7P11.2) WILD-TYPE     63     32     44     47
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          77                            63
  CLUS_2                          26                            32
  CLUS_3                          34                            44
  CLUS_4                          33                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       26     24     14     22     37
  AMP PEAK 11(7P11.2) WILD-TYPE     36     38     30     18     27
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          26                            36
  CLUS_2                          24                            38
  CLUS_3                          14                            30
  CLUS_4                          22                            18
  CLUS_5                          37                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       55     21     47
  AMP PEAK 11(7P11.2) WILD-TYPE     55     36     58
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          55                            55
  CLUS_2                          21                            36
  CLUS_3                          47                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       81     51     77
  AMP PEAK 11(7P11.2) WILD-TYPE     91     79     55
D11V7, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          81                            91
  CLUS_2                          51                            79
  CLUS_3                          77                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED      116     27     66
  AMP PEAK 11(7P11.2) WILD-TYPE    127     55     43
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                         116                           127
  CLUS_2                          27                            55
  CLUS_3                          66                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       42     28     26     26     17     22
  AMP PEAK 11(7P11.2) WILD-TYPE     31     29     33     34     16     37
D11V9, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          42                            31
  CLUS_2                          28                            29
  CLUS_3                          26                            33
  CLUS_4                          26                            34
  CLUS_5                          17                            16
  CLUS_6                          22                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       45     14     12     41     14     35
  AMP PEAK 11(7P11.2) WILD-TYPE     39     43     23     35     14     26
D11V10, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          45                            39
  CLUS_2                          14                            43
  CLUS_3                          12                            23
  CLUS_4                          41                            35
  CLUS_5                          14                            14
  CLUS_6                          35                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       63     50     36     43     12
  AMP PEAK 12(7Q21.2) WILD-TYPE     60    137      0     33      7
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          63                            60
  CLUS_2                          50                           137
  CLUS_3                          36                             0
  CLUS_4                          43                            33
  CLUS_5                          12                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       74     54     20     31
  AMP PEAK 12(7Q21.2) WILD-TYPE     50     67     22     75
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          74                            50
  CLUS_2                          54                            67
  CLUS_3                          20                            22
  CLUS_4                          31                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       15     47     43     33     29
  AMP PEAK 12(7Q21.2) WILD-TYPE     15     45     39     60     30
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          15                            15
  CLUS_2                          47                            45
  CLUS_3                          43                            39
  CLUS_4                          33                            60
  CLUS_5                          29                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       74     26     38     29
  AMP PEAK 12(7Q21.2) WILD-TYPE     66     32     40     51
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          74                            66
  CLUS_2                          26                            32
  CLUS_3                          38                            40
  CLUS_4                          29                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       26     24     16     23     30
  AMP PEAK 12(7Q21.2) WILD-TYPE     36     38     28     17     34
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          26                            36
  CLUS_2                          24                            38
  CLUS_3                          16                            28
  CLUS_4                          23                            17
  CLUS_5                          30                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       54     19     46
  AMP PEAK 12(7Q21.2) WILD-TYPE     56     38     59
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          54                            56
  CLUS_2                          19                            38
  CLUS_3                          46                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       82     48     70
  AMP PEAK 12(7Q21.2) WILD-TYPE     90     82     62
D12V7, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          82                            90
  CLUS_2                          48                            82
  CLUS_3                          70                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      115     26     59
  AMP PEAK 12(7Q21.2) WILD-TYPE    128     56     50
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         115                           128
  CLUS_2                          26                            56
  CLUS_3                          59                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       39     23     28     22     20     20
  AMP PEAK 12(7Q21.2) WILD-TYPE     34     34     31     38     13     39
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          39                            34
  CLUS_2                          23                            34
  CLUS_3                          28                            31
  CLUS_4                          22                            38
  CLUS_5                          20                            13
  CLUS_6                          20                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       40     14     12     39     14     33
  AMP PEAK 12(7Q21.2) WILD-TYPE     44     43     23     37     14     28
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          40                            44
  CLUS_2                          14                            43
  CLUS_3                          12                            23
  CLUS_4                          39                            37
  CLUS_5                          14                            14
  CLUS_6                          33                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       62     51     36     40     13
  AMP PEAK 13(7Q22.1) WILD-TYPE     61    136      0     36      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          62                            61
  CLUS_2                          51                           136
  CLUS_3                          36                             0
  CLUS_4                          40                            36
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       71     55     20     32
  AMP PEAK 13(7Q22.1) WILD-TYPE     53     66     22     74
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          71                            53
  CLUS_2                          55                            66
  CLUS_3                          20                            22
  CLUS_4                          32                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       14     47     42     33     29
  AMP PEAK 13(7Q22.1) WILD-TYPE     16     45     40     60     30
D13V3, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          47                            45
  CLUS_3                          42                            40
  CLUS_4                          33                            60
  CLUS_5                          29                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       71     24     39     31
  AMP PEAK 13(7Q22.1) WILD-TYPE     69     34     39     49
D13V4, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          71                            69
  CLUS_2                          24                            34
  CLUS_3                          39                            39
  CLUS_4                          31                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       27     26     16     21     27
  AMP PEAK 13(7Q22.1) WILD-TYPE     35     36     28     19     37
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          27                            35
  CLUS_2                          26                            36
  CLUS_3                          16                            28
  CLUS_4                          21                            19
  CLUS_5                          27                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED       51     22     44
  AMP PEAK 13(7Q22.1) WILD-TYPE     59     35     61
D13V6, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          51                            59
  CLUS_2                          22                            35
  CLUS_3                          44                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED       79     50     69
  AMP PEAK 13(7Q22.1) WILD-TYPE     93     80     63
D13V7, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          79                            93
  CLUS_2                          50                            80
  CLUS_3                          69                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED      112     28     58
  AMP PEAK 13(7Q22.1) WILD-TYPE    131     54     51
D13V8, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                         112                           131
  CLUS_2                          28                            54
  CLUS_3                          58                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q22.1) MUTATED       38     25     26     24     20     20
  AMP PEAK 13(7Q22.1) WILD-TYPE     35     32     33     36     13     39
D13V9, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          38                            35
  CLUS_2                          25                            32
  CLUS_3                          26                            33
  CLUS_4                          24                            36
  CLUS_5                          20                            13
  CLUS_6                          20                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q22.1) MUTATED       42     15     10     40     15     31
  AMP PEAK 13(7Q22.1) WILD-TYPE     42     42     25     36     13     30
D13V10, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          42                            42
  CLUS_2                          15                            42
  CLUS_3                          10                            25
  CLUS_4                          40                            36
  CLUS_5                          15                            13
  CLUS_6                          31                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       36     82     15     25     19
  AMP PEAK 14(8P23.1) WILD-TYPE     87    105     21     51      0
D14V1, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          36                            87
  CLUS_2                          82                           105
  CLUS_3                          15                            21
  CLUS_4                          25                            51
  CLUS_5                          19                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       36     67     16     35
  AMP PEAK 14(8P23.1) WILD-TYPE     88     54     26     71
D14V2, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          36                            88
  CLUS_2                          67                            54
  CLUS_3                          16                            26
  CLUS_4                          35                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED        8     41     33     41     17
  AMP PEAK 14(8P23.1) WILD-TYPE     22     51     49     52     42
D14V3, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          41                            51
  CLUS_3                          33                            49
  CLUS_4                          41                            52
  CLUS_5                          17                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       52     22     34     32
  AMP PEAK 14(8P23.1) WILD-TYPE     88     36     44     48
D14V4, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          52                            88
  CLUS_2                          22                            36
  CLUS_3                          34                            44
  CLUS_4                          32                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       30     24     21     16     16
  AMP PEAK 14(8P23.1) WILD-TYPE     32     38     23     24     48
D14V5, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          30                            32
  CLUS_2                          24                            38
  CLUS_3                          21                            23
  CLUS_4                          16                            24
  CLUS_5                          16                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED       30     25     52
  AMP PEAK 14(8P23.1) WILD-TYPE     80     32     53
D14V6, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          30                            80
  CLUS_2                          25                            32
  CLUS_3                          52                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED       77     46     50
  AMP PEAK 14(8P23.1) WILD-TYPE     95     84     82
D14V7, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          77                            95
  CLUS_2                          46                            84
  CLUS_3                          50                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED      106     31     36
  AMP PEAK 14(8P23.1) WILD-TYPE    137     51     73
D14V8, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                         106                           137
  CLUS_2                          31                            51
  CLUS_3                          36                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P23.1) MUTATED       24     31     22     25     13     18
  AMP PEAK 14(8P23.1) WILD-TYPE     49     26     37     35     20     41
D14V9, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          24                            49
  CLUS_2                          31                            26
  CLUS_3                          22                            37
  CLUS_4                          25                            35
  CLUS_5                          13                            20
  CLUS_6                          18                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P23.1) MUTATED       36     24     19     25     11     18
  AMP PEAK 14(8P23.1) WILD-TYPE     48     33     16     51     17     43
D14V10, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          36                            48
  CLUS_2                          24                            33
  CLUS_3                          19                            16
  CLUS_4                          25                            51
  CLUS_5                          11                            17
  CLUS_6                          18                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED      111    107     24     49     18
  AMP PEAK 15(8Q24.21) WILD-TYPE     12     80     12     27      1
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          111                             12
  CLUS_2                          107                             80
  CLUS_3                           24                             12
  CLUS_4                           49                             27
  CLUS_5                           18                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED      103     92     18     59
  AMP PEAK 15(8Q24.21) WILD-TYPE     21     29     24     47
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          103                             21
  CLUS_2                           92                             29
  CLUS_3                           18                             24
  CLUS_4                           59                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       24     66     59     59     35
  AMP PEAK 15(8Q24.21) WILD-TYPE      6     26     23     34     24
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           66                             26
  CLUS_3                           59                             23
  CLUS_4                           59                             34
  CLUS_5                           35                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       94     42     56     51
  AMP PEAK 15(8Q24.21) WILD-TYPE     46     16     22     29
D15V4, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           94                             46
  CLUS_2                           42                             16
  CLUS_3                           56                             22
  CLUS_4                           51                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       40     35     22     25     53
  AMP PEAK 15(8Q24.21) WILD-TYPE     22     27     22     15     11
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           40                             22
  CLUS_2                           35                             27
  CLUS_3                           22                             22
  CLUS_4                           25                             15
  CLUS_5                           53                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       72     34     69
  AMP PEAK 15(8Q24.21) WILD-TYPE     38     23     36
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           72                             38
  CLUS_2                           34                             23
  CLUS_3                           69                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED      121     72    112
  AMP PEAK 15(8Q24.21) WILD-TYPE     51     58     20
D15V7, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          121                             51
  CLUS_2                           72                             58
  CLUS_3                          112                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED      165     48     92
  AMP PEAK 15(8Q24.21) WILD-TYPE     78     34     17
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          165                             78
  CLUS_2                           48                             34
  CLUS_3                           92                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       62     46     41     38     21     29
  AMP PEAK 15(8Q24.21) WILD-TYPE     11     11     18     22     12     30
D15V9, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           62                             11
  CLUS_2                           46                             11
  CLUS_3                           41                             18
  CLUS_4                           38                             22
  CLUS_5                           21                             12
  CLUS_6                           29                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       62     28     22     55     17     53
  AMP PEAK 15(8Q24.21) WILD-TYPE     22     29     13     21     11      8
D15V10, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           62                             22
  CLUS_2                           28                             29
  CLUS_3                           22                             13
  CLUS_4                           55                             21
  CLUS_5                           17                             11
  CLUS_6                           53                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED       30     29      3      1      2
  AMP PEAK 16(9P24.1) WILD-TYPE     93    158     33     75     17
D16V1, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          30                            93
  CLUS_2                          29                           158
  CLUS_3                           3                            33
  CLUS_4                           1                            75
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED       21     15     11     11
  AMP PEAK 16(9P24.1) WILD-TYPE    103    106     31     95
D16V2, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          21                           103
  CLUS_2                          15                           106
  CLUS_3                          11                            31
  CLUS_4                          11                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED        4     15     14      9     11
  AMP PEAK 16(9P24.1) WILD-TYPE     26     77     68     84     48
D16V3, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          15                            77
  CLUS_3                          14                            68
  CLUS_4                           9                            84
  CLUS_5                          11                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED       22      7     14     10
  AMP PEAK 16(9P24.1) WILD-TYPE    118     51     64     70
D16V4, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          22                           118
  CLUS_2                           7                            51
  CLUS_3                          14                            64
  CLUS_4                          10                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED       12      4      7      6     15
  AMP PEAK 16(9P24.1) WILD-TYPE     50     58     37     34     49
D16V5, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          12                            50
  CLUS_2                           4                            58
  CLUS_3                           7                            37
  CLUS_4                           6                            34
  CLUS_5                          15                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       26      2     16
  AMP PEAK 16(9P24.1) WILD-TYPE     84     55     89
D16V6, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          26                            84
  CLUS_2                           2                            55
  CLUS_3                          16                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       23     13     28
  AMP PEAK 16(9P24.1) WILD-TYPE    149    117    104
D16V7, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          23                           149
  CLUS_2                          13                           117
  CLUS_3                          28                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       35      9     20
  AMP PEAK 16(9P24.1) WILD-TYPE    208     73     89
D16V8, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          35                           208
  CLUS_2                           9                            73
  CLUS_3                          20                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P24.1) MUTATED       16      8      7      9      3      3
  AMP PEAK 16(9P24.1) WILD-TYPE     57     49     52     51     30     56
D16V9, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          16                            57
  CLUS_2                           8                            49
  CLUS_3                           7                            52
  CLUS_4                           9                            51
  CLUS_5                           3                            30
  CLUS_6                           3                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P24.1) MUTATED       13      2      6     10      3     12
  AMP PEAK 16(9P24.1) WILD-TYPE     71     55     29     66     25     49
D16V10, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          13                            71
  CLUS_2                           2                            55
  CLUS_3                           6                            29
  CLUS_4                          10                            66
  CLUS_5                           3                            25
  CLUS_6                          12                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(9P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       43     28      5     11      4
  AMP PEAK 17(9P13.2) WILD-TYPE     80    159     31     65     15
D17V1, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          43                            80
  CLUS_2                          28                           159
  CLUS_3                           5                            31
  CLUS_4                          11                            65
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       32     25      5     21
  AMP PEAK 17(9P13.2) WILD-TYPE     92     96     37     85
D17V2, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          32                            92
  CLUS_2                          25                            96
  CLUS_3                           5                            37
  CLUS_4                          21                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       10     18     17     16     12
  AMP PEAK 17(9P13.2) WILD-TYPE     20     74     65     77     47
D17V3, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          18                            74
  CLUS_3                          17                            65
  CLUS_4                          16                            77
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       37      8     18     10
  AMP PEAK 17(9P13.2) WILD-TYPE    103     50     60     70
D17V4, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          37                           103
  CLUS_2                           8                            50
  CLUS_3                          18                            60
  CLUS_4                          10                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       10      4     11      9     14
  AMP PEAK 17(9P13.2) WILD-TYPE     52     58     33     31     50
D17V5, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          10                            52
  CLUS_2                           4                            58
  CLUS_3                          11                            33
  CLUS_4                           9                            31
  CLUS_5                          14                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       23      4     21
  AMP PEAK 17(9P13.2) WILD-TYPE     87     53     84
D17V6, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          23                            87
  CLUS_2                           4                            53
  CLUS_3                          21                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       34     19     36
  AMP PEAK 17(9P13.2) WILD-TYPE    138    111     96
D17V7, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          34                           138
  CLUS_2                          19                           111
  CLUS_3                          36                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       47     13     29
  AMP PEAK 17(9P13.2) WILD-TYPE    196     69     80
D17V8, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          47                           196
  CLUS_2                          13                            69
  CLUS_3                          29                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9P13.2) MUTATED       27     15      9     12      3      5
  AMP PEAK 17(9P13.2) WILD-TYPE     46     42     50     48     30     54
D17V9, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          27                            46
  CLUS_2                          15                            42
  CLUS_3                           9                            50
  CLUS_4                          12                            48
  CLUS_5                           3                            30
  CLUS_6                           5                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9P13.2) MUTATED       18      6      6     19      4     18
  AMP PEAK 17(9P13.2) WILD-TYPE     66     51     29     57     24     43
D17V10, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          18                            66
  CLUS_2                           6                            51
  CLUS_3                           6                            29
  CLUS_4                          19                            57
  CLUS_5                           4                            24
  CLUS_6                          18                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       52     31     13     19      7
  AMP PEAK 18(9Q34.3) WILD-TYPE     71    156     23     57     12
D18V1, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          52                            71
  CLUS_2                          31                           156
  CLUS_3                          13                            23
  CLUS_4                          19                            57
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       47     32      7     23
  AMP PEAK 18(9Q34.3) WILD-TYPE     77     89     35     83
D18V2, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          47                            77
  CLUS_2                          32                            89
  CLUS_3                           7                            35
  CLUS_4                          23                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       11     27     23     24     15
  AMP PEAK 18(9Q34.3) WILD-TYPE     19     65     59     69     44
D18V3, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          27                            65
  CLUS_3                          23                            59
  CLUS_4                          24                            69
  CLUS_5                          15                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       46     13     23     18
  AMP PEAK 18(9Q34.3) WILD-TYPE     94     45     55     62
D18V4, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          46                            94
  CLUS_2                          13                            45
  CLUS_3                          23                            55
  CLUS_4                          18                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       13      6     10     11     23
  AMP PEAK 18(9Q34.3) WILD-TYPE     49     56     34     29     41
D18V5, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          13                            49
  CLUS_2                           6                            56
  CLUS_3                          10                            34
  CLUS_4                          11                            29
  CLUS_5                          23                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       30      5     28
  AMP PEAK 18(9Q34.3) WILD-TYPE     80     52     77
D18V6, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          30                            80
  CLUS_2                           5                            52
  CLUS_3                          28                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       44     27     49
  AMP PEAK 18(9Q34.3) WILD-TYPE    128    103     83
D18V7, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          44                           128
  CLUS_2                          27                           103
  CLUS_3                          49                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       68     17     35
  AMP PEAK 18(9Q34.3) WILD-TYPE    175     65     74
D18V8, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          68                           175
  CLUS_2                          17                            65
  CLUS_3                          35                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(9Q34.3) MUTATED       23     16     11     20      9      9
  AMP PEAK 18(9Q34.3) WILD-TYPE     50     41     48     40     24     50
D18V9, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          23                            50
  CLUS_2                          16                            41
  CLUS_3                          11                            48
  CLUS_4                          20                            40
  CLUS_5                           9                            24
  CLUS_6                           9                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(9Q34.3) MUTATED       26     11      4     28      2     17
  AMP PEAK 18(9Q34.3) WILD-TYPE     58     46     31     48     26     44
D18V10, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          26                            58
  CLUS_2                          11                            46
  CLUS_3                           4                            31
  CLUS_4                          28                            48
  CLUS_5                           2                            26
  CLUS_6                          17                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(10P11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       53     12     14     36      4
  AMP PEAK 19(10P11.22) WILD-TYPE     70    175     22     40     15
D19V1, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            53                              70
  CLUS_2                            12                             175
  CLUS_3                            14                              22
  CLUS_4                            36                              40
  CLUS_5                             4                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       55     30      3     19
  AMP PEAK 19(10P11.22) WILD-TYPE     69     91     39     87
D19V2, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            55                              69
  CLUS_2                            30                              91
  CLUS_3                             3                              39
  CLUS_4                            19                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED        6     26     20     24     14
  AMP PEAK 19(10P11.22) WILD-TYPE     24     66     62     69     45
D19V3, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                             6                              24
  CLUS_2                            26                              66
  CLUS_3                            20                              62
  CLUS_4                            24                              69
  CLUS_5                            14                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       39      9     22     20
  AMP PEAK 19(10P11.22) WILD-TYPE    101     49     56     60
D19V4, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            39                             101
  CLUS_2                             9                              49
  CLUS_3                            22                              56
  CLUS_4                            20                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       11     12      8     10     29
  AMP PEAK 19(10P11.22) WILD-TYPE     51     50     36     30     35
D19V5, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            11                              51
  CLUS_2                            12                              50
  CLUS_3                             8                              36
  CLUS_4                            10                              30
  CLUS_5                            29                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       36     12     22
  AMP PEAK 19(10P11.22) WILD-TYPE     74     45     83
D19V6, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            36                              74
  CLUS_2                            12                              45
  CLUS_3                            22                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       39     26     51
  AMP PEAK 19(10P11.22) WILD-TYPE    133    104     81
D19V7, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            39                             133
  CLUS_2                            26                             104
  CLUS_3                            51                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       50     17     49
  AMP PEAK 19(10P11.22) WILD-TYPE    193     65     60
D19V8, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            50                             193
  CLUS_2                            17                              65
  CLUS_3                            49                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(10P11.22) MUTATED       32     16      8     14     10     12
  AMP PEAK 19(10P11.22) WILD-TYPE     41     41     51     46     23     47
D19V9, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            32                              41
  CLUS_2                            16                              41
  CLUS_3                             8                              51
  CLUS_4                            14                              46
  CLUS_5                            10                              23
  CLUS_6                            12                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(10P11.22) MUTATED       27      6      4     23      4     28
  AMP PEAK 19(10P11.22) WILD-TYPE     57     51     31     53     24     33
D19V10, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            27                              57
  CLUS_2                             6                              51
  CLUS_3                             4                              31
  CLUS_4                            23                              53
  CLUS_5                             4                              24
  CLUS_6                            28                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED       27     11      6     37      7
  AMP PEAK 20(10Q22.2) WILD-TYPE     96    176     30     39     12
D20V1, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                           11                            176
  CLUS_3                            6                             30
  CLUS_4                           37                             39
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       31     29      4     15
  AMP PEAK 20(10Q22.2) WILD-TYPE     93     92     38     91
D20V2, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           31                             93
  CLUS_2                           29                             92
  CLUS_3                            4                             38
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED        5     21     14     21     11
  AMP PEAK 20(10Q22.2) WILD-TYPE     25     71     68     72     48
D20V3, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           21                             71
  CLUS_3                           14                             68
  CLUS_4                           21                             72
  CLUS_5                           11                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       34      7     15     16
  AMP PEAK 20(10Q22.2) WILD-TYPE    106     51     63     64
D20V4, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           34                            106
  CLUS_2                            7                             51
  CLUS_3                           15                             63
  CLUS_4                           16                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED        8     10     10      5     21
  AMP PEAK 20(10Q22.2) WILD-TYPE     54     52     34     35     43
D20V5, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                            8                             54
  CLUS_2                           10                             52
  CLUS_3                           10                             34
  CLUS_4                            5                             35
  CLUS_5                           21                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       30      7     17
  AMP PEAK 20(10Q22.2) WILD-TYPE     80     50     88
D20V6, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           30                             80
  CLUS_2                            7                             50
  CLUS_3                           17                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       36     21     28
  AMP PEAK 20(10Q22.2) WILD-TYPE    136    109    104
D20V7, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           36                            136
  CLUS_2                           21                            109
  CLUS_3                           28                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       50     11     24
  AMP PEAK 20(10Q22.2) WILD-TYPE    193     71     85
D20V8, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           50                            193
  CLUS_2                           11                             71
  CLUS_3                           24                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(10Q22.2) MUTATED       16     12      8     13     10     10
  AMP PEAK 20(10Q22.2) WILD-TYPE     57     45     51     47     23     49
D20V9, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           16                             57
  CLUS_2                           12                             45
  CLUS_3                            8                             51
  CLUS_4                           13                             47
  CLUS_5                           10                             23
  CLUS_6                           10                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(10Q22.2) MUTATED       16      8      3     25      2     15
  AMP PEAK 20(10Q22.2) WILD-TYPE     68     49     32     51     26     46
D20V10, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           16                             68
  CLUS_2                            8                             49
  CLUS_3                            3                             32
  CLUS_4                           25                             51
  CLUS_5                            2                             26
  CLUS_6                           15                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(10Q26.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED       31     14      8     30      5
  AMP PEAK 21(10Q26.13) WILD-TYPE     92    173     28     46     14
D21V1, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            31                              92
  CLUS_2                            14                             173
  CLUS_3                             8                              28
  CLUS_4                            30                              46
  CLUS_5                             5                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       40     18      3     14
  AMP PEAK 21(10Q26.13) WILD-TYPE     84    103     39     92
D21V2, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            40                              84
  CLUS_2                            18                             103
  CLUS_3                             3                              39
  CLUS_4                            14                              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED        5     22     13     22     11
  AMP PEAK 21(10Q26.13) WILD-TYPE     25     70     69     71     48
D21V3, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            22                              70
  CLUS_3                            13                              69
  CLUS_4                            22                              71
  CLUS_5                            11                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       29      7     18     19
  AMP PEAK 21(10Q26.13) WILD-TYPE    111     51     60     61
D21V4, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            29                             111
  CLUS_2                             7                              51
  CLUS_3                            18                              60
  CLUS_4                            19                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED        8     14      5      5     22
  AMP PEAK 21(10Q26.13) WILD-TYPE     54     48     39     35     42
D21V5, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             8                              54
  CLUS_2                            14                              48
  CLUS_3                             5                              39
  CLUS_4                             5                              35
  CLUS_5                            22                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       29     11     14
  AMP PEAK 21(10Q26.13) WILD-TYPE     81     46     91
D21V6, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            29                              81
  CLUS_2                            11                              46
  CLUS_3                            14                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       32     24     31
  AMP PEAK 21(10Q26.13) WILD-TYPE    140    106    101
D21V7, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            32                             140
  CLUS_2                            24                             106
  CLUS_3                            31                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       42     15     30
  AMP PEAK 21(10Q26.13) WILD-TYPE    201     67     79
D21V8, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            42                             201
  CLUS_2                            15                              67
  CLUS_3                            30                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(10Q26.13) MUTATED       18     10     10     12      8     12
  AMP PEAK 21(10Q26.13) WILD-TYPE     55     47     49     48     25     47
D21V9, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            18                              55
  CLUS_2                            10                              47
  CLUS_3                            10                              49
  CLUS_4                            12                              48
  CLUS_5                             8                              25
  CLUS_6                            12                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(10Q26.13) MUTATED       20      9      4     19      1     17
  AMP PEAK 21(10Q26.13) WILD-TYPE     64     48     31     57     27     44
D21V10, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            20                              64
  CLUS_2                             9                              48
  CLUS_3                             4                              31
  CLUS_4                            19                              57
  CLUS_5                             1                              27
  CLUS_6                            17                              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED       42     17      3     24      2
  AMP PEAK 22(11P13) WILD-TYPE     81    170     33     52     17
D22V1, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         42                           81
  CLUS_2                         17                          170
  CLUS_3                          3                           33
  CLUS_4                         24                           52
  CLUS_5                          2                           17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       40     13      7     19
  AMP PEAK 22(11P13) WILD-TYPE     84    108     35     87
D22V2, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         40                           84
  CLUS_2                         13                          108
  CLUS_3                          7                           35
  CLUS_4                         19                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED        4     21     16     20     10
  AMP PEAK 22(11P13) WILD-TYPE     26     71     66     73     49
D22V3, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                          4                           26
  CLUS_2                         21                           71
  CLUS_3                         16                           66
  CLUS_4                         20                           73
  CLUS_5                         10                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       33      6     18     14
  AMP PEAK 22(11P13) WILD-TYPE    107     52     60     66
D22V4, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         33                          107
  CLUS_2                          6                           52
  CLUS_3                         18                           60
  CLUS_4                         14                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED        7     14      5      1     20
  AMP PEAK 22(11P13) WILD-TYPE     55     48     39     39     44
D22V5, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                          7                           55
  CLUS_2                         14                           48
  CLUS_3                          5                           39
  CLUS_4                          1                           39
  CLUS_5                         20                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       32     10      5
  AMP PEAK 22(11P13) WILD-TYPE     78     47    100
D22V6, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         32                           78
  CLUS_2                         10                           47
  CLUS_3                          5                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       24     21     41
  AMP PEAK 22(11P13) WILD-TYPE    148    109     91
D22V7, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         24                          148
  CLUS_2                         21                          109
  CLUS_3                         41                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       35     12     39
  AMP PEAK 22(11P13) WILD-TYPE    208     70     70
D22V8, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         35                          208
  CLUS_2                         12                           70
  CLUS_3                         39                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(11P13) MUTATED       23     11      8      8      7     10
  AMP PEAK 22(11P13) WILD-TYPE     50     46     51     52     26     49
D22V9, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         23                           50
  CLUS_2                         11                           46
  CLUS_3                          8                           51
  CLUS_4                          8                           52
  CLUS_5                          7                           26
  CLUS_6                         10                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(11P13) MUTATED       12      9      6     14      2     24
  AMP PEAK 22(11P13) WILD-TYPE     72     48     29     62     26     37
D22V10, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         12                           72
  CLUS_2                          9                           48
  CLUS_3                          6                           29
  CLUS_4                         14                           62
  CLUS_5                          2                           26
  CLUS_6                         24                           37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED       47     10      5     28      2
  AMP PEAK 23(11P11.2) WILD-TYPE     76    177     31     48     17
D23V1, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           47                             76
  CLUS_2                           10                            177
  CLUS_3                            5                             31
  CLUS_4                           28                             48
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       46     16      6     13
  AMP PEAK 23(11P11.2) WILD-TYPE     78    105     36     93
D23V2, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           46                             78
  CLUS_2                           16                            105
  CLUS_3                            6                             36
  CLUS_4                           13                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED        5     23     18     17     10
  AMP PEAK 23(11P11.2) WILD-TYPE     25     69     64     76     49
D23V3, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           23                             69
  CLUS_3                           18                             64
  CLUS_4                           17                             76
  CLUS_5                           10                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       35      6     20     12
  AMP PEAK 23(11P11.2) WILD-TYPE    105     52     58     68
D23V4, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                            6                             52
  CLUS_3                           20                             58
  CLUS_4                           12                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED        6      7      5      2     25
  AMP PEAK 23(11P11.2) WILD-TYPE     56     55     39     38     39
D23V5, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                            6                             56
  CLUS_2                            7                             55
  CLUS_3                            5                             39
  CLUS_4                            2                             38
  CLUS_5                           25                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       32      4      9
  AMP PEAK 23(11P11.2) WILD-TYPE     78     53     96
D23V6, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           32                             78
  CLUS_2                            4                             53
  CLUS_3                            9                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       30     13     46
  AMP PEAK 23(11P11.2) WILD-TYPE    142    117     86
D23V7, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           30                            142
  CLUS_2                           13                            117
  CLUS_3                           46                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       41      6     42
  AMP PEAK 23(11P11.2) WILD-TYPE    202     76     67
D23V8, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           41                            202
  CLUS_2                            6                             76
  CLUS_3                           42                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(11P11.2) MUTATED       27     14      6      8      7      6
  AMP PEAK 23(11P11.2) WILD-TYPE     46     43     53     52     26     53
D23V9, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           27                             46
  CLUS_2                           14                             43
  CLUS_3                            6                             53
  CLUS_4                            8                             52
  CLUS_5                            7                             26
  CLUS_6                            6                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(11P11.2) MUTATED       17      3      5     16      2     25
  AMP PEAK 23(11P11.2) WILD-TYPE     67     54     30     60     26     36
D23V10, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           17                             67
  CLUS_2                            3                             54
  CLUS_3                            5                             30
  CLUS_4                           16                             60
  CLUS_5                            2                             26
  CLUS_6                           25                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       50     16      5     36      8
  AMP PEAK 24(11Q13.3) WILD-TYPE     73    171     31     40     11
D24V1, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           50                             73
  CLUS_2                           16                            171
  CLUS_3                            5                             31
  CLUS_4                           36                             40
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       46     30      6     20
  AMP PEAK 24(11Q13.3) WILD-TYPE     78     91     36     86
D24V2, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           46                             78
  CLUS_2                           30                             91
  CLUS_3                            6                             36
  CLUS_4                           20                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED        3     32     23     20     12
  AMP PEAK 24(11Q13.3) WILD-TYPE     27     60     59     73     47
D24V3, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           32                             60
  CLUS_3                           23                             59
  CLUS_4                           20                             73
  CLUS_5                           12                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       39      9     26     16
  AMP PEAK 24(11Q13.3) WILD-TYPE    101     49     52     64
D24V4, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           39                            101
  CLUS_2                            9                             49
  CLUS_3                           26                             52
  CLUS_4                           16                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       12      9     11      6     22
  AMP PEAK 24(11Q13.3) WILD-TYPE     50     53     33     34     42
D24V5, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           12                             50
  CLUS_2                            9                             53
  CLUS_3                           11                             33
  CLUS_4                            6                             34
  CLUS_5                           22                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       33      8     19
  AMP PEAK 24(11Q13.3) WILD-TYPE     77     49     86
D24V6, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           33                             77
  CLUS_2                            8                             49
  CLUS_3                           19                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       42     18     52
  AMP PEAK 24(11Q13.3) WILD-TYPE    130    112     80
D24V7, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           42                            130
  CLUS_2                           18                            112
  CLUS_3                           52                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       64      9     39
  AMP PEAK 24(11Q13.3) WILD-TYPE    179     73     70
D24V8, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           64                            179
  CLUS_2                            9                             73
  CLUS_3                           39                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(11Q13.3) MUTATED       26     20      7     16     12      8
  AMP PEAK 24(11Q13.3) WILD-TYPE     47     37     52     44     21     51
D24V9, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           26                             47
  CLUS_2                           20                             37
  CLUS_3                            7                             52
  CLUS_4                           16                             44
  CLUS_5                           12                             21
  CLUS_6                            8                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(11Q13.3) MUTATED       22      6      4     29      5     23
  AMP PEAK 24(11Q13.3) WILD-TYPE     62     51     31     47     23     38
D24V10, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           22                             62
  CLUS_2                            6                             51
  CLUS_3                            4                             31
  CLUS_4                           29                             47
  CLUS_5                            5                             23
  CLUS_6                           23                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       39     26     13     42      8
  AMP PEAK 25(12P12.1) WILD-TYPE     84    161     23     34     11
D25V1, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           39                             84
  CLUS_2                           26                            161
  CLUS_3                           13                             23
  CLUS_4                           42                             34
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       48     37     12     22
  AMP PEAK 25(12P12.1) WILD-TYPE     76     84     30     84
D25V2, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           37                             84
  CLUS_3                           12                             30
  CLUS_4                           22                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED        9     16     26     24     20
  AMP PEAK 25(12P12.1) WILD-TYPE     21     76     56     69     39
D25V3, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           16                             76
  CLUS_3                           26                             56
  CLUS_4                           24                             69
  CLUS_5                           20                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       43     14     15     23
  AMP PEAK 25(12P12.1) WILD-TYPE     97     44     63     57
D25V4, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           43                             97
  CLUS_2                           14                             44
  CLUS_3                           15                             63
  CLUS_4                           23                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       13     15      9     12     24
  AMP PEAK 25(12P12.1) WILD-TYPE     49     47     35     28     40
D25V5, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           13                             49
  CLUS_2                           15                             47
  CLUS_3                            9                             35
  CLUS_4                           12                             28
  CLUS_5                           24                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       34     12     27
  AMP PEAK 25(12P12.1) WILD-TYPE     76     45     78
D25V6, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           34                             76
  CLUS_2                           12                             45
  CLUS_3                           27                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       45     29     52
  AMP PEAK 25(12P12.1) WILD-TYPE    127    101     80
D25V7, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           45                            127
  CLUS_2                           29                            101
  CLUS_3                           52                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       68     20     38
  AMP PEAK 25(12P12.1) WILD-TYPE    175     62     71
D25V8, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           68                            175
  CLUS_2                           20                             62
  CLUS_3                           38                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(12P12.1) MUTATED       26     18     16     20      6     15
  AMP PEAK 25(12P12.1) WILD-TYPE     47     39     43     40     27     44
D25V9, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           26                             47
  CLUS_2                           18                             39
  CLUS_3                           16                             43
  CLUS_4                           20                             40
  CLUS_5                            6                             27
  CLUS_6                           15                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(12P12.1) MUTATED       28      9      6     26      9     23
  AMP PEAK 25(12P12.1) WILD-TYPE     56     48     29     50     19     38
D25V10, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           28                             56
  CLUS_2                            9                             48
  CLUS_3                            6                             29
  CLUS_4                           26                             50
  CLUS_5                            9                             19
  CLUS_6                           23                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       32     24      7     41      5
  AMP PEAK 26(12Q15) WILD-TYPE     91    163     29     35     14
D26V1, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         32                           91
  CLUS_2                         24                          163
  CLUS_3                          7                           29
  CLUS_4                         41                           35
  CLUS_5                          5                           14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       39     22     15     21
  AMP PEAK 26(12Q15) WILD-TYPE     85     99     27     85
D26V2, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         39                           85
  CLUS_2                         22                           99
  CLUS_3                         15                           27
  CLUS_4                         21                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       12     15     23     15     17
  AMP PEAK 26(12Q15) WILD-TYPE     18     77     59     78     42
D26V3, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         12                           18
  CLUS_2                         15                           77
  CLUS_3                         23                           59
  CLUS_4                         15                           78
  CLUS_5                         17                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       40      9     17     16
  AMP PEAK 26(12Q15) WILD-TYPE    100     49     61     64
D26V4, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         40                          100
  CLUS_2                          9                           49
  CLUS_3                         17                           61
  CLUS_4                         16                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       11     12     14      9     20
  AMP PEAK 26(12Q15) WILD-TYPE     51     50     30     31     44
D26V5, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         11                           51
  CLUS_2                         12                           50
  CLUS_3                         14                           30
  CLUS_4                          9                           31
  CLUS_5                         20                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       34      7     25
  AMP PEAK 26(12Q15) WILD-TYPE     76     50     80
D26V6, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         34                           76
  CLUS_2                          7                           50
  CLUS_3                         25                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       40     25     42
  AMP PEAK 26(12Q15) WILD-TYPE    132    105     90
D26V7, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         40                          132
  CLUS_2                         25                          105
  CLUS_3                         42                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       56     16     35
  AMP PEAK 26(12Q15) WILD-TYPE    187     66     74
D26V8, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         56                          187
  CLUS_2                         16                           66
  CLUS_3                         35                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(12Q15) MUTATED       24     13     14     12      2     12
  AMP PEAK 26(12Q15) WILD-TYPE     49     44     45     48     31     47
D26V9, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         24                           49
  CLUS_2                         13                           44
  CLUS_3                         14                           45
  CLUS_4                         12                           48
  CLUS_5                          2                           31
  CLUS_6                         12                           47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(12Q15) MUTATED       20      9      5     15      7     21
  AMP PEAK 26(12Q15) WILD-TYPE     64     48     30     61     21     40
D26V10, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         20                           64
  CLUS_2                          9                           48
  CLUS_3                          5                           30
  CLUS_4                         15                           61
  CLUS_5                          7                           21
  CLUS_6                         21                           40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       79     35     27     19     10
  AMP PEAK 27(13Q12.3) WILD-TYPE     44    152      9     57      9
D27V1, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           79                             44
  CLUS_2                           35                            152
  CLUS_3                           27                              9
  CLUS_4                           19                             57
  CLUS_5                           10                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       74     39      8     30
  AMP PEAK 27(13Q12.3) WILD-TYPE     50     82     34     76
D27V2, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           74                             50
  CLUS_2                           39                             82
  CLUS_3                            8                             34
  CLUS_4                           30                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       16     41     29     30     16
  AMP PEAK 27(13Q12.3) WILD-TYPE     14     51     53     63     43
D27V3, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                           41                             51
  CLUS_3                           29                             53
  CLUS_4                           30                             63
  CLUS_5                           16                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       57     20     30     25
  AMP PEAK 27(13Q12.3) WILD-TYPE     83     38     48     55
D27V4, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           57                             83
  CLUS_2                           20                             38
  CLUS_3                           30                             48
  CLUS_4                           25                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       19     17     12     21     32
  AMP PEAK 27(13Q12.3) WILD-TYPE     43     45     32     19     32
D27V5, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           19                             43
  CLUS_2                           17                             45
  CLUS_3                           12                             32
  CLUS_4                           21                             19
  CLUS_5                           32                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       37     21     43
  AMP PEAK 27(13Q12.3) WILD-TYPE     73     36     62
D27V6, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           37                             73
  CLUS_2                           21                             36
  CLUS_3                           43                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       56     39     72
  AMP PEAK 27(13Q12.3) WILD-TYPE    116     91     60
D27V7, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           56                            116
  CLUS_2                           39                             91
  CLUS_3                           72                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       80     26     61
  AMP PEAK 27(13Q12.3) WILD-TYPE    163     56     48
D27V8, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           80                            163
  CLUS_2                           26                             56
  CLUS_3                           61                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(13Q12.3) MUTATED       38     16     21     22     18     14
  AMP PEAK 27(13Q12.3) WILD-TYPE     35     41     38     38     15     45
D27V9, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           38                             35
  CLUS_2                           16                             41
  CLUS_3                           21                             38
  CLUS_4                           22                             38
  CLUS_5                           18                             15
  CLUS_6                           14                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(13Q12.3) MUTATED       30     15     10     29      7     38
  AMP PEAK 27(13Q12.3) WILD-TYPE     54     42     25     47     21     23
D27V10, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           30                             54
  CLUS_2                           15                             42
  CLUS_3                           10                             25
  CLUS_4                           29                             47
  CLUS_5                            7                             21
  CLUS_6                           38                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       89     40     25     20      7
  AMP PEAK 28(13Q22.1) WILD-TYPE     34    147     11     56     12
D28V1, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           89                             34
  CLUS_2                           40                            147
  CLUS_3                           25                             11
  CLUS_4                           20                             56
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       79     39     10     31
  AMP PEAK 28(13Q22.1) WILD-TYPE     45     82     32     75
D28V2, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           79                             45
  CLUS_2                           39                             82
  CLUS_3                           10                             32
  CLUS_4                           31                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       16     41     35     33     20
  AMP PEAK 28(13Q22.1) WILD-TYPE     14     51     47     60     39
D28V3, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                           41                             51
  CLUS_3                           35                             47
  CLUS_4                           33                             60
  CLUS_5                           20                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       63     22     33     27
  AMP PEAK 28(13Q22.1) WILD-TYPE     77     36     45     53
D28V4, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           63                             77
  CLUS_2                           22                             36
  CLUS_3                           33                             45
  CLUS_4                           27                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       20     16      9     20     38
  AMP PEAK 28(13Q22.1) WILD-TYPE     42     46     35     20     26
D28V5, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           20                             42
  CLUS_2                           16                             46
  CLUS_3                            9                             35
  CLUS_4                           20                             20
  CLUS_5                           38                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       44     20     39
  AMP PEAK 28(13Q22.1) WILD-TYPE     66     37     66
D28V6, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           44                             66
  CLUS_2                           20                             37
  CLUS_3                           39                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       59     38     80
  AMP PEAK 28(13Q22.1) WILD-TYPE    113     92     52
D28V7, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           59                            113
  CLUS_2                           38                             92
  CLUS_3                           80                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       82     26     69
  AMP PEAK 28(13Q22.1) WILD-TYPE    161     56     40
D28V8, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           82                            161
  CLUS_2                           26                             56
  CLUS_3                           69                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(13Q22.1) MUTATED       45     20     23     20     17     13
  AMP PEAK 28(13Q22.1) WILD-TYPE     28     37     36     40     16     46
D28V9, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           45                             28
  CLUS_2                           20                             37
  CLUS_3                           23                             36
  CLUS_4                           20                             40
  CLUS_5                           17                             16
  CLUS_6                           13                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(13Q22.1) MUTATED       35     14     11     30      7     41
  AMP PEAK 28(13Q22.1) WILD-TYPE     49     43     24     46     21     20
D28V10, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           35                             49
  CLUS_2                           14                             43
  CLUS_3                           11                             24
  CLUS_4                           30                             46
  CLUS_5                            7                             21
  CLUS_6                           41                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(15Q26.1) MUTATED       61     15      5     31      1
  AMP PEAK 29(15Q26.1) WILD-TYPE     62    172     31     45     18
D29V1, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                           15                            172
  CLUS_3                            5                             31
  CLUS_4                           31                             45
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(15Q26.1) MUTATED       57     29      1     15
  AMP PEAK 29(15Q26.1) WILD-TYPE     67     92     41     91
D29V2, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           57                             67
  CLUS_2                           29                             92
  CLUS_3                            1                             41
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(15Q26.1) MUTATED       11     30     19     18     13
  AMP PEAK 29(15Q26.1) WILD-TYPE     19     62     63     75     46
D29V3, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                           30                             62
  CLUS_3                           19                             63
  CLUS_4                           18                             75
  CLUS_5                           13                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(15Q26.1) MUTATED       46     12     22     11
  AMP PEAK 29(15Q26.1) WILD-TYPE     94     46     56     69
D29V4, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                           12                             46
  CLUS_3                           22                             56
  CLUS_4                           11                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(15Q26.1) MUTATED       12      4     10     11     28
  AMP PEAK 29(15Q26.1) WILD-TYPE     50     58     34     29     36
D29V5, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           12                             50
  CLUS_2                            4                             58
  CLUS_3                           10                             34
  CLUS_4                           11                             29
  CLUS_5                           28                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(15Q26.1) MUTATED       37      5     23
  AMP PEAK 29(15Q26.1) WILD-TYPE     73     52     82
D29V6, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           37                             73
  CLUS_2                            5                             52
  CLUS_3                           23                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(15Q26.1) MUTATED       46     18     47
  AMP PEAK 29(15Q26.1) WILD-TYPE    126    112     85
D29V7, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           18                            112
  CLUS_3                           47                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(15Q26.1) MUTATED       61      8     42
  AMP PEAK 29(15Q26.1) WILD-TYPE    182     74     67
D29V8, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           61                            182
  CLUS_2                            8                             74
  CLUS_3                           42                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(15Q26.1) MUTATED       29     14     20     19      5      6
  AMP PEAK 29(15Q26.1) WILD-TYPE     44     43     39     41     28     53
D29V9, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                           14                             43
  CLUS_3                           20                             39
  CLUS_4                           19                             41
  CLUS_5                            5                             28
  CLUS_6                            6                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(15Q26.1) MUTATED       30      3      7     27      2     24
  AMP PEAK 29(15Q26.1) WILD-TYPE     54     54     28     49     26     37
D29V10, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           30                             54
  CLUS_2                            3                             54
  CLUS_3                            7                             28
  CLUS_4                           27                             49
  CLUS_5                            2                             26
  CLUS_6                           24                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(17Q12) MUTATED       82     21     14     23      7
  AMP PEAK 30(17Q12) WILD-TYPE     41    166     22     53     12
D30V1, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         82                           41
  CLUS_2                         21                          166
  CLUS_3                         14                           22
  CLUS_4                         23                           53
  CLUS_5                          7                           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(17Q12) MUTATED       69     33     12     19
  AMP PEAK 30(17Q12) WILD-TYPE     55     88     30     87
D30V2, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         69                           55
  CLUS_2                         33                           88
  CLUS_3                         12                           30
  CLUS_4                         19                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(17Q12) MUTATED       16     37     24     22     14
  AMP PEAK 30(17Q12) WILD-TYPE     14     55     58     71     45
D30V3, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         16                           14
  CLUS_2                         37                           55
  CLUS_3                         24                           58
  CLUS_4                         22                           71
  CLUS_5                         14                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(17Q12) MUTATED       55      7     33     18
  AMP PEAK 30(17Q12) WILD-TYPE     85     51     45     62
D30V4, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         55                           85
  CLUS_2                          7                           51
  CLUS_3                         33                           45
  CLUS_4                         18                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(17Q12) MUTATED       14     10     13      8     34
  AMP PEAK 30(17Q12) WILD-TYPE     48     52     31     32     30
D30V5, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         14                           48
  CLUS_2                         10                           52
  CLUS_3                         13                           31
  CLUS_4                          8                           32
  CLUS_5                         34                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(17Q12) MUTATED       49      7     23
  AMP PEAK 30(17Q12) WILD-TYPE     61     50     82
D30V6, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         49                           61
  CLUS_2                          7                           50
  CLUS_3                         23                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(17Q12) MUTATED       43     28     73
  AMP PEAK 30(17Q12) WILD-TYPE    129    102     59
D30V7, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         43                          129
  CLUS_2                         28                          102
  CLUS_3                         73                           59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(17Q12) MUTATED       71     16     57
  AMP PEAK 30(17Q12) WILD-TYPE    172     66     52
D30V8, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         71                          172
  CLUS_2                         16                           66
  CLUS_3                         57                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(17Q12) MUTATED       38     16     18     20     10     11
  AMP PEAK 30(17Q12) WILD-TYPE     35     41     41     40     23     48
D30V9, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         38                           35
  CLUS_2                         16                           41
  CLUS_3                         18                           41
  CLUS_4                         20                           40
  CLUS_5                         10                           23
  CLUS_6                         11                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(17Q12) MUTATED       32      8      6     33      5     29
  AMP PEAK 30(17Q12) WILD-TYPE     52     49     29     43     23     32
D30V10, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         32                           52
  CLUS_2                          8                           49
  CLUS_3                          6                           29
  CLUS_4                         33                           43
  CLUS_5                          5                           23
  CLUS_6                         29                           32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(18Q11.2) MUTATED       58     27     12     36      7
  AMP PEAK 31(18Q11.2) WILD-TYPE     65    160     24     40     12
D31V1, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           58                             65
  CLUS_2                           27                            160
  CLUS_3                           12                             24
  CLUS_4                           36                             40
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(18Q11.2) MUTATED       55     37      3     28
  AMP PEAK 31(18Q11.2) WILD-TYPE     69     84     39     78
D31V2, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           55                             69
  CLUS_2                           37                             84
  CLUS_3                            3                             39
  CLUS_4                           28                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(18Q11.2) MUTATED       10     28     26     28     15
  AMP PEAK 31(18Q11.2) WILD-TYPE     20     64     56     65     44
D31V3, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           28                             64
  CLUS_3                           26                             56
  CLUS_4                           28                             65
  CLUS_5                           15                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(18Q11.2) MUTATED       53     13     18     23
  AMP PEAK 31(18Q11.2) WILD-TYPE     87     45     60     57
D31V4, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           53                             87
  CLUS_2                           13                             45
  CLUS_3                           18                             60
  CLUS_4                           23                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(18Q11.2) MUTATED       12     12     16      8     26
  AMP PEAK 31(18Q11.2) WILD-TYPE     50     50     28     32     38
D31V5, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           12                             50
  CLUS_2                           12                             50
  CLUS_3                           16                             28
  CLUS_4                            8                             32
  CLUS_5                           26                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(18Q11.2) MUTATED       33     10     31
  AMP PEAK 31(18Q11.2) WILD-TYPE     77     47     74
D31V6, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           33                             77
  CLUS_2                           10                             47
  CLUS_3                           31                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(18Q11.2) MUTATED       42     32     64
  AMP PEAK 31(18Q11.2) WILD-TYPE    130     98     68
D31V7, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           42                            130
  CLUS_2                           32                             98
  CLUS_3                           64                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(18Q11.2) MUTATED       66     20     52
  AMP PEAK 31(18Q11.2) WILD-TYPE    177     62     57
D31V8, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           66                            177
  CLUS_2                           20                             62
  CLUS_3                           52                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(18Q11.2) MUTATED       30     19     16     15      9     14
  AMP PEAK 31(18Q11.2) WILD-TYPE     43     38     43     45     24     45
D31V9, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           30                             43
  CLUS_2                           19                             38
  CLUS_3                           16                             43
  CLUS_4                           15                             45
  CLUS_5                            9                             24
  CLUS_6                           14                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(18Q11.2) MUTATED       30     12      5     25      4     27
  AMP PEAK 31(18Q11.2) WILD-TYPE     54     45     30     51     24     34
D31V10, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           30                             54
  CLUS_2                           12                             45
  CLUS_3                            5                             30
  CLUS_4                           25                             51
  CLUS_5                            4                             24
  CLUS_6                           27                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(19P13.2) MUTATED       18      6     10     12      1
  AMP PEAK 32(19P13.2) WILD-TYPE    105    181     26     64     18
D32V1, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           18                            105
  CLUS_2                            6                            181
  CLUS_3                           10                             26
  CLUS_4                           12                             64
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(19P13.2) MUTATED       19     15      4      5
  AMP PEAK 32(19P13.2) WILD-TYPE    105    106     38    101
D32V2, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           19                            105
  CLUS_2                           15                            106
  CLUS_3                            4                             38
  CLUS_4                            5                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(19P13.2) MUTATED        2     12     10      4     10
  AMP PEAK 32(19P13.2) WILD-TYPE     28     80     72     89     49
D32V3, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           12                             80
  CLUS_3                           10                             72
  CLUS_4                            4                             89
  CLUS_5                           10                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(19P13.2) MUTATED       18      5      8      7
  AMP PEAK 32(19P13.2) WILD-TYPE    122     53     70     73
D32V4, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           18                            122
  CLUS_2                            5                             53
  CLUS_3                            8                             70
  CLUS_4                            7                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(19P13.2) MUTATED        5      7      3      6      8
  AMP PEAK 32(19P13.2) WILD-TYPE     57     55     41     34     56
D32V5, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            5                             57
  CLUS_2                            7                             55
  CLUS_3                            3                             41
  CLUS_4                            6                             34
  CLUS_5                            8                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(19P13.2) MUTATED       14      5     10
  AMP PEAK 32(19P13.2) WILD-TYPE     96     52     95
D32V6, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           14                             96
  CLUS_2                            5                             52
  CLUS_3                           10                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(19P13.2) MUTATED       17     12     17
  AMP PEAK 32(19P13.2) WILD-TYPE    155    118    115
D32V7, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           17                            155
  CLUS_2                           12                            118
  CLUS_3                           17                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(19P13.2) MUTATED       26      9     11
  AMP PEAK 32(19P13.2) WILD-TYPE    217     73     98
D32V8, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           26                            217
  CLUS_2                            9                             73
  CLUS_3                           11                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(19P13.2) MUTATED       11      5      8      4      0      8
  AMP PEAK 32(19P13.2) WILD-TYPE     62     52     51     56     33     51
D32V9, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           11                             62
  CLUS_2                            5                             52
  CLUS_3                            8                             51
  CLUS_4                            4                             56
  CLUS_5                            0                             33
  CLUS_6                            8                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(19P13.2) MUTATED       13      4      3      7      4      5
  AMP PEAK 32(19P13.2) WILD-TYPE     71     53     32     69     24     56
D32V10, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           13                             71
  CLUS_2                            4                             53
  CLUS_3                            3                             32
  CLUS_4                            7                             69
  CLUS_5                            4                             24
  CLUS_6                            5                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       79     17     10     23      1
  AMP PEAK 33(19Q12) WILD-TYPE     44    170     26     53     18
D33V1, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         79                           44
  CLUS_2                         17                          170
  CLUS_3                         10                           26
  CLUS_4                         23                           53
  CLUS_5                          1                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED       67     21      9     21
  AMP PEAK 33(19Q12) WILD-TYPE     57    100     33     85
D33V2, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         67                           57
  CLUS_2                         21                          100
  CLUS_3                          9                           33
  CLUS_4                         21                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED        9     20     37     15     21
  AMP PEAK 33(19Q12) WILD-TYPE     21     72     45     78     38
D33V3, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                         20                           72
  CLUS_3                         37                           45
  CLUS_4                         15                           78
  CLUS_5                         21                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED       59     11     17     15
  AMP PEAK 33(19Q12) WILD-TYPE     81     47     61     65
D33V4, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         59                           81
  CLUS_2                         11                           47
  CLUS_3                         17                           61
  CLUS_4                         15                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       10      9      8      6     46
  AMP PEAK 33(19Q12) WILD-TYPE     52     53     36     34     18
D33V5, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         10                           52
  CLUS_2                          9                           53
  CLUS_3                          8                           36
  CLUS_4                          6                           34
  CLUS_5                         46                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       53      6     20
  AMP PEAK 33(19Q12) WILD-TYPE     57     51     85
D33V6, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         53                           57
  CLUS_2                          6                           51
  CLUS_3                         20                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       32     27     70
  AMP PEAK 33(19Q12) WILD-TYPE    140    103     62
D33V7, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         32                          140
  CLUS_2                         27                          103
  CLUS_3                         70                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       46     15     68
  AMP PEAK 33(19Q12) WILD-TYPE    197     67     41
D33V8, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         46                          197
  CLUS_2                         15                           67
  CLUS_3                         68                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(19Q12) MUTATED       41     11     15     12     12     13
  AMP PEAK 33(19Q12) WILD-TYPE     32     46     44     48     21     46
D33V9, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         41                           32
  CLUS_2                         11                           46
  CLUS_3                         15                           44
  CLUS_4                         12                           48
  CLUS_5                         12                           21
  CLUS_6                         13                           46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(19Q12) MUTATED       24      9      7     16      6     42
  AMP PEAK 33(19Q12) WILD-TYPE     60     48     28     60     22     19
D33V10, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         24                           60
  CLUS_2                          9                           48
  CLUS_3                          7                           28
  CLUS_4                         16                           60
  CLUS_5                          6                           22
  CLUS_6                         42                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       55     20     11     25      0
  AMP PEAK 34(19Q13.32) WILD-TYPE     68    167     25     51     19
D34V1, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            55                              68
  CLUS_2                            20                             167
  CLUS_3                            11                              25
  CLUS_4                            25                              51
  CLUS_5                             0                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       43     25     12     18
  AMP PEAK 34(19Q13.32) WILD-TYPE     81     96     30     88
D34V2, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            43                              81
  CLUS_2                            25                              96
  CLUS_3                            12                              30
  CLUS_4                            18                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED        9     19     24     15     16
  AMP PEAK 34(19Q13.32) WILD-TYPE     21     73     58     78     43
D34V3, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            19                              73
  CLUS_3                            24                              58
  CLUS_4                            15                              78
  CLUS_5                            16                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       45      9     17     12
  AMP PEAK 34(19Q13.32) WILD-TYPE     95     49     61     68
D34V4, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            45                              95
  CLUS_2                             9                              49
  CLUS_3                            17                              61
  CLUS_4                            12                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       13      8      8      6     30
  AMP PEAK 34(19Q13.32) WILD-TYPE     49     54     36     34     34
D34V5, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            13                              49
  CLUS_2                             8                              54
  CLUS_3                             8                              36
  CLUS_4                             6                              34
  CLUS_5                            30                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       37      8     20
  AMP PEAK 34(19Q13.32) WILD-TYPE     73     49     85
D34V6, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            37                              73
  CLUS_2                             8                              49
  CLUS_3                            20                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       36     25     49
  AMP PEAK 34(19Q13.32) WILD-TYPE    136    105     83
D34V7, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            36                             136
  CLUS_2                            25                             105
  CLUS_3                            49                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       53     15     42
  AMP PEAK 34(19Q13.32) WILD-TYPE    190     67     67
D34V8, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            53                             190
  CLUS_2                            15                              67
  CLUS_3                            42                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(19Q13.32) MUTATED       29     12      9     14     10      9
  AMP PEAK 34(19Q13.32) WILD-TYPE     44     45     50     46     23     50
D34V9, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            29                              44
  CLUS_2                            12                              45
  CLUS_3                             9                              50
  CLUS_4                            14                              46
  CLUS_5                            10                              23
  CLUS_6                             9                              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(19Q13.32) MUTATED       16      7      5     20      9     26
  AMP PEAK 34(19Q13.32) WILD-TYPE     68     50     30     56     19     35
D34V10, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            16                              68
  CLUS_2                             7                              50
  CLUS_3                             5                              30
  CLUS_4                            20                              56
  CLUS_5                             9                              19
  CLUS_6                            26                              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED      116     69     32     60     16
  AMP PEAK 35(20Q13.2) WILD-TYPE      7    118      4     16      3
D35V1, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          116                              7
  CLUS_2                           69                            118
  CLUS_3                           32                              4
  CLUS_4                           60                             16
  CLUS_5                           16                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED      118     60     32     51
  AMP PEAK 35(20Q13.2) WILD-TYPE      6     61     10     55
D35V2, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          118                              6
  CLUS_2                           60                             61
  CLUS_3                           32                             10
  CLUS_4                           51                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       24     64     57     49     41
  AMP PEAK 35(20Q13.2) WILD-TYPE      6     28     25     44     18
D35V3, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           64                             28
  CLUS_3                           57                             25
  CLUS_4                           49                             44
  CLUS_5                           41                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED      112     27     54     42
  AMP PEAK 35(20Q13.2) WILD-TYPE     28     31     24     38
D35V4, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          112                             28
  CLUS_2                           27                             31
  CLUS_3                           54                             24
  CLUS_4                           42                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       29     31     29     26     61
  AMP PEAK 35(20Q13.2) WILD-TYPE     33     31     15     14      3
D35V5, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           29                             33
  CLUS_2                           31                             31
  CLUS_3                           29                             15
  CLUS_4                           26                             14
  CLUS_5                           61                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED       91     25     60
  AMP PEAK 35(20Q13.2) WILD-TYPE     19     32     45
D35V6, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           91                             19
  CLUS_2                           25                             32
  CLUS_3                           60                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED       98     72    118
  AMP PEAK 35(20Q13.2) WILD-TYPE     74     58     14
D35V7, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           98                             74
  CLUS_2                           72                             58
  CLUS_3                          118                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED      144     42    102
  AMP PEAK 35(20Q13.2) WILD-TYPE     99     40      7
D35V8, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          144                             99
  CLUS_2                           42                             40
  CLUS_3                          102                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(20Q13.2) MUTATED       62     30     37     37     25     30
  AMP PEAK 35(20Q13.2) WILD-TYPE     11     27     22     23      8     29
D35V9, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           62                             11
  CLUS_2                           30                             27
  CLUS_3                           37                             22
  CLUS_4                           37                             23
  CLUS_5                           25                              8
  CLUS_6                           30                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(20Q13.2) MUTATED       57     27     20     44     16     57
  AMP PEAK 35(20Q13.2) WILD-TYPE     27     30     15     32     12      4
D35V10, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           57                             27
  CLUS_2                           27                             30
  CLUS_3                           20                             15
  CLUS_4                           44                             32
  CLUS_5                           16                             12
  CLUS_6                           57                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED       32     17     13     19      5
  AMP PEAK 36(XQ27.3) WILD-TYPE     91    170     23     57     14
D36V1, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          32                            91
  CLUS_2                          17                           170
  CLUS_3                          13                            23
  CLUS_4                          19                            57
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       26     32      7     10
  AMP PEAK 36(XQ27.3) WILD-TYPE     98     89     35     96
D36V2, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          26                            98
  CLUS_2                          32                            89
  CLUS_3                           7                            35
  CLUS_4                          10                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED        6     18     11     20     10
  AMP PEAK 36(XQ27.3) WILD-TYPE     24     74     71     73     49
D36V3, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          18                            74
  CLUS_3                          11                            71
  CLUS_4                          20                            73
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       26      9     18     12
  AMP PEAK 36(XQ27.3) WILD-TYPE    114     49     60     68
D36V4, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          26                           114
  CLUS_2                           9                            49
  CLUS_3                          18                            60
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED        9      8      8     11     13
  AMP PEAK 36(XQ27.3) WILD-TYPE     53     54     36     29     51
D36V5, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                           9                            53
  CLUS_2                           8                            54
  CLUS_3                           8                            36
  CLUS_4                          11                            29
  CLUS_5                          13                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       21      8     20
  AMP PEAK 36(XQ27.3) WILD-TYPE     89     49     85
D36V6, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          21                            89
  CLUS_2                           8                            49
  CLUS_3                          20                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       38     16     30
  AMP PEAK 36(XQ27.3) WILD-TYPE    134    114    102
D36V7, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          38                           134
  CLUS_2                          16                           114
  CLUS_3                          30                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       50     14     20
  AMP PEAK 36(XQ27.3) WILD-TYPE    193     68     89
D36V8, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          50                           193
  CLUS_2                          14                            68
  CLUS_3                          20                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(XQ27.3) MUTATED       16     12     10     15      7      4
  AMP PEAK 36(XQ27.3) WILD-TYPE     57     45     49     45     26     55
D36V9, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          16                            57
  CLUS_2                          12                            45
  CLUS_3                          10                            49
  CLUS_4                          15                            45
  CLUS_5                           7                            26
  CLUS_6                           4                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(XQ27.3) MUTATED       20      3      7     19      5     10
  AMP PEAK 36(XQ27.3) WILD-TYPE     64     54     28     57     23     51
D36V10, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          20                            64
  CLUS_2                           3                            54
  CLUS_3                           7                            28
  CLUS_4                          19                            57
  CLUS_5                           5                            23
  CLUS_6                          10                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       73     12      5     39      6
  DEL PEAK  1(1P36.11) WILD-TYPE     50    175     31     37     13
D37V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           73                             50
  CLUS_2                           12                            175
  CLUS_3                            5                             31
  CLUS_4                           39                             37
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       69     26      4     18
  DEL PEAK  1(1P36.11) WILD-TYPE     55     95     38     88
D37V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           69                             55
  CLUS_2                           26                             95
  CLUS_3                            4                             38
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       12     40     22     16     18
  DEL PEAK  1(1P36.11) WILD-TYPE     18     52     60     77     41
D37V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           40                             52
  CLUS_3                           22                             60
  CLUS_4                           16                             77
  CLUS_5                           18                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       50     13     34     11
  DEL PEAK  1(1P36.11) WILD-TYPE     90     45     44     69
D37V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           50                             90
  CLUS_2                           13                             45
  CLUS_3                           34                             44
  CLUS_4                           11                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       12      7     16     11     30
  DEL PEAK  1(1P36.11) WILD-TYPE     50     55     28     29     34
D37V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             50
  CLUS_2                            7                             55
  CLUS_3                           16                             28
  CLUS_4                           11                             29
  CLUS_5                           30                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       41      7     28
  DEL PEAK  1(1P36.11) WILD-TYPE     69     50     77
D37V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             69
  CLUS_2                            7                             50
  CLUS_3                           28                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       48     24     60
  DEL PEAK  1(1P36.11) WILD-TYPE    124    106     72
D37V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           48                            124
  CLUS_2                           24                            106
  CLUS_3                           60                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       63     14     55
  DEL PEAK  1(1P36.11) WILD-TYPE    180     68     54
D37V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           63                            180
  CLUS_2                           14                             68
  CLUS_3                           55                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       41     12     18     15      9      8
  DEL PEAK  1(1P36.11) WILD-TYPE     32     45     41     45     24     51
D37V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             32
  CLUS_2                           12                             45
  CLUS_3                           18                             41
  CLUS_4                           15                             45
  CLUS_5                            9                             24
  CLUS_6                            8                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       31      5      8     21      5     33
  DEL PEAK  1(1P36.11) WILD-TYPE     53     52     27     55     23     28
D37V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           31                             53
  CLUS_2                            5                             52
  CLUS_3                            8                             27
  CLUS_4                           21                             55
  CLUS_5                            5                             23
  CLUS_6                           33                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       57      7      7     19      4
  DEL PEAK  2(1P13.2) WILD-TYPE     66    180     29     57     15
D38V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          57                            66
  CLUS_2                           7                           180
  CLUS_3                           7                            29
  CLUS_4                          19                            57
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       50     21      6      8
  DEL PEAK  2(1P13.2) WILD-TYPE     74    100     36     98
D38V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          50                            74
  CLUS_2                          21                           100
  CLUS_3                           6                            36
  CLUS_4                           8                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        6     16     24     11     20
  DEL PEAK  2(1P13.2) WILD-TYPE     24     76     58     82     39
D38V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          16                            76
  CLUS_3                          24                            58
  CLUS_4                          11                            82
  CLUS_5                          20                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       39     10     14     14
  DEL PEAK  2(1P13.2) WILD-TYPE    101     48     64     66
D38V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          39                           101
  CLUS_2                          10                            48
  CLUS_3                          14                            64
  CLUS_4                          14                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        8      5      5      8     23
  DEL PEAK  2(1P13.2) WILD-TYPE     54     57     39     32     41
D38V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           8                            54
  CLUS_2                           5                            57
  CLUS_3                           5                            39
  CLUS_4                           8                            32
  CLUS_5                          23                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       29      5     15
  DEL PEAK  2(1P13.2) WILD-TYPE     81     52     90
D38V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          29                            81
  CLUS_2                           5                            52
  CLUS_3                          15                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       33     17     42
  DEL PEAK  2(1P13.2) WILD-TYPE    139    113     90
D38V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          33                           139
  CLUS_2                          17                           113
  CLUS_3                          42                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       49      9     34
  DEL PEAK  2(1P13.2) WILD-TYPE    194     73     75
D38V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          49                           194
  CLUS_2                           9                            73
  CLUS_3                          34                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       24      9     11     11      6     12
  DEL PEAK  2(1P13.2) WILD-TYPE     49     48     48     49     27     47
D38V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          24                            49
  CLUS_2                           9                            48
  CLUS_3                          11                            48
  CLUS_4                          11                            49
  CLUS_5                           6                            27
  CLUS_6                          12                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       19      4      3     17      5     25
  DEL PEAK  2(1P13.2) WILD-TYPE     65     53     32     59     23     36
D38V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          19                            65
  CLUS_2                           4                            53
  CLUS_3                           3                            32
  CLUS_4                          17                            59
  CLUS_5                           5                            23
  CLUS_6                          25                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       13      3      6      6      2
  DEL PEAK  3(1Q44) WILD-TYPE    110    184     30     70     17
D39V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                         110
  CLUS_2                         3                         184
  CLUS_3                         6                          30
  CLUS_4                         6                          70
  CLUS_5                         2                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       16      6      3      1
  DEL PEAK  3(1Q44) WILD-TYPE    108    115     39    105
D39V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                         108
  CLUS_2                         6                         115
  CLUS_3                         3                          39
  CLUS_4                         1                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        0      5      6      7      6
  DEL PEAK  3(1Q44) WILD-TYPE     30     87     76     86     53
D39V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         0                          30
  CLUS_2                         5                          87
  CLUS_3                         6                          76
  CLUS_4                         7                          86
  CLUS_5                         6                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       11      5      2      6
  DEL PEAK  3(1Q44) WILD-TYPE    129     53     76     74
D39V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        11                         129
  CLUS_2                         5                          53
  CLUS_3                         2                          76
  CLUS_4                         6                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        5      2      4      2      8
  DEL PEAK  3(1Q44) WILD-TYPE     57     60     40     38     56
D39V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          57
  CLUS_2                         2                          60
  CLUS_3                         4                          40
  CLUS_4                         2                          38
  CLUS_5                         8                          56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       13      1      7
  DEL PEAK  3(1Q44) WILD-TYPE     97     56     98
D39V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                          97
  CLUS_2                         1                          56
  CLUS_3                         7                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       12      3     14
  DEL PEAK  3(1Q44) WILD-TYPE    160    127    118
D39V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        12                         160
  CLUS_2                         3                         127
  CLUS_3                        14                         118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       17      2     10
  DEL PEAK  3(1Q44) WILD-TYPE    226     80     99
D39V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        17                         226
  CLUS_2                         2                          80
  CLUS_3                        10                          99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        5      4      4      5      2      2
  DEL PEAK  3(1Q44) WILD-TYPE     68     53     55     55     31     57
D39V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          68
  CLUS_2                         4                          53
  CLUS_3                         4                          55
  CLUS_4                         5                          55
  CLUS_5                         2                          31
  CLUS_6                         2                          57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        4      0      2      9      2      5
  DEL PEAK  3(1Q44) WILD-TYPE     80     57     33     67     26     56
D39V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          80
  CLUS_2                         0                          57
  CLUS_3                         2                          33
  CLUS_4                         9                          67
  CLUS_5                         2                          26
  CLUS_6                         5                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  4(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED       11      3      4      5      3
  DEL PEAK  4(1Q44) WILD-TYPE    112    184     32     71     16
D40V1, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        11                         112
  CLUS_2                         3                         184
  CLUS_3                         4                          32
  CLUS_4                         5                          71
  CLUS_5                         3                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q44) MUTATED       16      7      2      1
  DEL PEAK  4(1Q44) WILD-TYPE    108    114     40    105
D40V2, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        16                         108
  CLUS_2                         7                         114
  CLUS_3                         2                          40
  CLUS_4                         1                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED        0      4      4      6      5
  DEL PEAK  4(1Q44) WILD-TYPE     30     88     78     87     54
D40V3, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         0                          30
  CLUS_2                         4                          88
  CLUS_3                         4                          78
  CLUS_4                         6                          87
  CLUS_5                         5                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q44) MUTATED        7      5      1      6
  DEL PEAK  4(1Q44) WILD-TYPE    133     53     77     74
D40V4, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         7                         133
  CLUS_2                         5                          53
  CLUS_3                         1                          77
  CLUS_4                         6                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED        4      3      3      1      6
  DEL PEAK  4(1Q44) WILD-TYPE     58     59     41     39     58
D40V5, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         4                          58
  CLUS_2                         3                          59
  CLUS_3                         3                          41
  CLUS_4                         1                          39
  CLUS_5                         6                          58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       10      2      5
  DEL PEAK  4(1Q44) WILD-TYPE    100     55    100
D40V6, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        10                         100
  CLUS_2                         2                          55
  CLUS_3                         5                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       10      4     11
  DEL PEAK  4(1Q44) WILD-TYPE    162    126    121
D40V7, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        10                         162
  CLUS_2                         4                         126
  CLUS_3                        11                         121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       15      4      6
  DEL PEAK  4(1Q44) WILD-TYPE    228     78    103
D40V8, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        15                         228
  CLUS_2                         4                          78
  CLUS_3                         6                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q44) MUTATED        5      2      4      5      3      3
  DEL PEAK  4(1Q44) WILD-TYPE     68     55     55     55     30     56
D40V9, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         5                          68
  CLUS_2                         2                          55
  CLUS_3                         4                          55
  CLUS_4                         5                          55
  CLUS_5                         3                          30
  CLUS_6                         3                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q44) MUTATED        5      2      2      7      2      4
  DEL PEAK  4(1Q44) WILD-TYPE     79     55     33     69     26     57
D40V10, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         5                          79
  CLUS_2                         2                          55
  CLUS_3                         2                          33
  CLUS_4                         7                          69
  CLUS_5                         2                          26
  CLUS_6                         4                          57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK  5(2Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q32.1) MUTATED       28     12      7     15      2
  DEL PEAK  5(2Q32.1) WILD-TYPE     95    175     29     61     17
D41V1, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          28                            95
  CLUS_2                          12                           175
  CLUS_3                           7                            29
  CLUS_4                          15                            61
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q32.1) MUTATED       29     18      1      8
  DEL PEAK  5(2Q32.1) WILD-TYPE     95    103     41     98
D41V2, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          29                            95
  CLUS_2                          18                           103
  CLUS_3                           1                            41
  CLUS_4                           8                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q32.1) MUTATED        5     11     12     11     10
  DEL PEAK  5(2Q32.1) WILD-TYPE     25     81     70     82     49
D41V3, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          11                            81
  CLUS_3                          12                            70
  CLUS_4                          11                            82
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q32.1) MUTATED       24      7      7     11
  DEL PEAK  5(2Q32.1) WILD-TYPE    116     51     71     69
D41V4, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          24                           116
  CLUS_2                           7                            51
  CLUS_3                           7                            71
  CLUS_4                          11                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q32.1) MUTATED        3      7      9      5     10
  DEL PEAK  5(2Q32.1) WILD-TYPE     59     55     35     35     54
D41V5, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           3                            59
  CLUS_2                           7                            55
  CLUS_3                           9                            35
  CLUS_4                           5                            35
  CLUS_5                          10                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q32.1) MUTATED       11      8     15
  DEL PEAK  5(2Q32.1) WILD-TYPE     99     49     90
D41V6, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          11                            99
  CLUS_2                           8                            49
  CLUS_3                          15                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q32.1) MUTATED       16     17     30
  DEL PEAK  5(2Q32.1) WILD-TYPE    156    113    102
D41V7, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          16                           156
  CLUS_2                          17                           113
  CLUS_3                          30                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q32.1) MUTATED       24     10     29
  DEL PEAK  5(2Q32.1) WILD-TYPE    219     72     80
D41V8, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          24                           219
  CLUS_2                          10                            72
  CLUS_3                          29                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q32.1) MUTATED       17      4      7     10      2      9
  DEL PEAK  5(2Q32.1) WILD-TYPE     56     53     52     50     31     50
D41V9, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                           4                            53
  CLUS_3                           7                            52
  CLUS_4                          10                            50
  CLUS_5                           2                            31
  CLUS_6                           9                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q32.1) MUTATED       17      5      3      6      4     14
  DEL PEAK  5(2Q32.1) WILD-TYPE     67     52     32     70     24     47
D41V10, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          17                            67
  CLUS_2                           5                            52
  CLUS_3                           3                            32
  CLUS_4                           6                            70
  CLUS_5                           4                            24
  CLUS_6                          14                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  6(2Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q33.3) MUTATED       24      8      7      9      1
  DEL PEAK  6(2Q33.3) WILD-TYPE     99    179     29     67     18
D42V1, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          24                            99
  CLUS_2                           8                           179
  CLUS_3                           7                            29
  CLUS_4                           9                            67
  CLUS_5                           1                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q33.3) MUTATED       22     13      2      9
  DEL PEAK  6(2Q33.3) WILD-TYPE    102    108     40     97
D42V2, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          22                           102
  CLUS_2                          13                           108
  CLUS_3                           2                            40
  CLUS_4                           9                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q33.3) MUTATED        3      8      9      5     12
  DEL PEAK  6(2Q33.3) WILD-TYPE     27     84     73     88     47
D42V3, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                           8                            84
  CLUS_3                           9                            73
  CLUS_4                           5                            88
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q33.3) MUTATED       18      7      7      5
  DEL PEAK  6(2Q33.3) WILD-TYPE    122     51     71     75
D42V4, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          18                           122
  CLUS_2                           7                            51
  CLUS_3                           7                            71
  CLUS_4                           5                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q33.3) MUTATED        5      3      6      5     10
  DEL PEAK  6(2Q33.3) WILD-TYPE     57     59     38     35     54
D42V5, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                           5                            57
  CLUS_2                           3                            59
  CLUS_3                           6                            38
  CLUS_4                           5                            35
  CLUS_5                          10                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q33.3) MUTATED       11      5     13
  DEL PEAK  6(2Q33.3) WILD-TYPE     99     52     92
D42V6, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          11                            99
  CLUS_2                           5                            52
  CLUS_3                          13                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q33.3) MUTATED       16      9     23
  DEL PEAK  6(2Q33.3) WILD-TYPE    156    121    109
D42V7, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          16                           156
  CLUS_2                           9                           121
  CLUS_3                          23                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q33.3) MUTATED       25      3     20
  DEL PEAK  6(2Q33.3) WILD-TYPE    218     79     89
D42V8, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          25                           218
  CLUS_2                           3                            79
  CLUS_3                          20                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q33.3) MUTATED       11      6      8      7      0      5
  DEL PEAK  6(2Q33.3) WILD-TYPE     62     51     51     53     33     54
D42V9, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          11                            62
  CLUS_2                           6                            51
  CLUS_3                           8                            51
  CLUS_4                           7                            53
  CLUS_5                           0                            33
  CLUS_6                           5                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q33.3) MUTATED       13      2      2      9      2      9
  DEL PEAK  6(2Q33.3) WILD-TYPE     71     55     33     67     26     52
D42V10, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          13                            71
  CLUS_2                           2                            55
  CLUS_3                           2                            33
  CLUS_4                           9                            67
  CLUS_5                           2                            26
  CLUS_6                           9                            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK  7(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q37.2) MUTATED       36     10      4     15      7
  DEL PEAK  7(2Q37.2) WILD-TYPE     87    177     32     61     12
D43V1, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          36                            87
  CLUS_2                          10                           177
  CLUS_3                           4                            32
  CLUS_4                          15                            61
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q37.2) MUTATED       38     14      1     14
  DEL PEAK  7(2Q37.2) WILD-TYPE     86    107     41     92
D43V2, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          38                            86
  CLUS_2                          14                           107
  CLUS_3                           1                            41
  CLUS_4                          14                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q37.2) MUTATED        3     19     15      9     12
  DEL PEAK  7(2Q37.2) WILD-TYPE     27     73     67     84     47
D43V3, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          19                            73
  CLUS_3                          15                            67
  CLUS_4                           9                            84
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q37.2) MUTATED       29      9     11      9
  DEL PEAK  7(2Q37.2) WILD-TYPE    111     49     67     71
D43V4, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          29                           111
  CLUS_2                           9                            49
  CLUS_3                          11                            67
  CLUS_4                           9                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q37.2) MUTATED        3      6     10      6     17
  DEL PEAK  7(2Q37.2) WILD-TYPE     59     56     34     34     47
D43V5, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                           3                            59
  CLUS_2                           6                            56
  CLUS_3                          10                            34
  CLUS_4                           6                            34
  CLUS_5                          17                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q37.2) MUTATED       21      5     16
  DEL PEAK  7(2Q37.2) WILD-TYPE     89     52     89
D43V6, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          21                            89
  CLUS_2                           5                            52
  CLUS_3                          16                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q37.2) MUTATED       20     14     37
  DEL PEAK  7(2Q37.2) WILD-TYPE    152    116     95
D43V7, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          20                           152
  CLUS_2                          14                           116
  CLUS_3                          37                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q37.2) MUTATED       32      6     33
  DEL PEAK  7(2Q37.2) WILD-TYPE    211     76     76
D43V8, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          32                           211
  CLUS_2                           6                            76
  CLUS_3                          33                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q37.2) MUTATED       19      8     12     11      5      5
  DEL PEAK  7(2Q37.2) WILD-TYPE     54     49     47     49     28     54
D43V9, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                           8                            49
  CLUS_3                          12                            47
  CLUS_4                          11                            49
  CLUS_5                           5                            28
  CLUS_6                           5                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q37.2) MUTATED       20      4      3     12      3     18
  DEL PEAK  7(2Q37.2) WILD-TYPE     64     53     32     64     25     43
D43V10, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          20                            64
  CLUS_2                           4                            53
  CLUS_3                           3                            32
  CLUS_4                          12                            64
  CLUS_5                           3                            25
  CLUS_6                          18                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK  8(3P26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P26.1) MUTATED       65     19     16     36      7
  DEL PEAK  8(3P26.1) WILD-TYPE     58    168     20     40     12
D44V1, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          65                            58
  CLUS_2                          19                           168
  CLUS_3                          16                            20
  CLUS_4                          36                            40
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P26.1) MUTATED       67     33      9     20
  DEL PEAK  8(3P26.1) WILD-TYPE     57     88     33     86
D44V2, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          67                            57
  CLUS_2                          33                            88
  CLUS_3                           9                            33
  CLUS_4                          20                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P26.1) MUTATED       12     28     29     28     15
  DEL PEAK  8(3P26.1) WILD-TYPE     18     64     53     65     44
D44V3, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                          28                            64
  CLUS_3                          29                            53
  CLUS_4                          28                            65
  CLUS_5                          15                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P26.1) MUTATED       51     12     28     21
  DEL PEAK  8(3P26.1) WILD-TYPE     89     46     50     59
D44V4, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          51                            89
  CLUS_2                          12                            46
  CLUS_3                          28                            50
  CLUS_4                          21                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P26.1) MUTATED       11     11     12     14     27
  DEL PEAK  8(3P26.1) WILD-TYPE     51     51     32     26     37
D44V5, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          11                            51
  CLUS_2                          11                            51
  CLUS_3                          12                            32
  CLUS_4                          14                            26
  CLUS_5                          27                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P26.1) MUTATED       36     12     27
  DEL PEAK  8(3P26.1) WILD-TYPE     74     45     78
D44V6, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          36                            74
  CLUS_2                          12                            45
  CLUS_3                          27                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P26.1) MUTATED       46     29     65
  DEL PEAK  8(3P26.1) WILD-TYPE    126    101     67
D44V7, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          46                           126
  CLUS_2                          29                           101
  CLUS_3                          65                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P26.1) MUTATED       66     16     58
  DEL PEAK  8(3P26.1) WILD-TYPE    177     66     51
D44V8, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          66                           177
  CLUS_2                          16                            66
  CLUS_3                          58                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P26.1) MUTATED       37     18     13     16     14     13
  DEL PEAK  8(3P26.1) WILD-TYPE     36     39     46     44     19     46
D44V9, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          37                            36
  CLUS_2                          18                            39
  CLUS_3                          13                            46
  CLUS_4                          16                            44
  CLUS_5                          14                            19
  CLUS_6                          13                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P26.1) MUTATED       25      9      7     27      7     36
  DEL PEAK  8(3P26.1) WILD-TYPE     59     48     28     49     21     25
D44V10, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          25                            59
  CLUS_2                           9                            48
  CLUS_3                           7                            28
  CLUS_4                          27                            49
  CLUS_5                           7                            21
  CLUS_6                          36                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK  9(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       67     28     16     37     10
  DEL PEAK  9(3P14.2) WILD-TYPE     56    159     20     39      9
D45V1, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          67                            56
  CLUS_2                          28                           159
  CLUS_3                          16                            20
  CLUS_4                          37                            39
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       70     41     15     19
  DEL PEAK  9(3P14.2) WILD-TYPE     54     80     27     87
D45V2, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          41                            80
  CLUS_3                          15                            27
  CLUS_4                          19                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       14     28     30     28     22
  DEL PEAK  9(3P14.2) WILD-TYPE     16     64     52     65     37
D45V3, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          28                            64
  CLUS_3                          30                            52
  CLUS_4                          28                            65
  CLUS_5                          22                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       59     17     21     25
  DEL PEAK  9(3P14.2) WILD-TYPE     81     41     57     55
D45V4, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          59                            81
  CLUS_2                          17                            41
  CLUS_3                          21                            57
  CLUS_4                          25                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       16      9     14     14     35
  DEL PEAK  9(3P14.2) WILD-TYPE     46     53     30     26     29
D45V5, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          16                            46
  CLUS_2                           9                            53
  CLUS_3                          14                            30
  CLUS_4                          14                            26
  CLUS_5                          35                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       45      9     34
  DEL PEAK  9(3P14.2) WILD-TYPE     65     48     71
D45V6, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          45                            65
  CLUS_2                           9                            48
  CLUS_3                          34                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       55     29     71
  DEL PEAK  9(3P14.2) WILD-TYPE    117    101     61
D45V7, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          55                           117
  CLUS_2                          29                           101
  CLUS_3                          71                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       78     16     61
  DEL PEAK  9(3P14.2) WILD-TYPE    165     66     48
D45V8, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          78                           165
  CLUS_2                          16                            66
  CLUS_3                          61                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       37     21     21     20     11     13
  DEL PEAK  9(3P14.2) WILD-TYPE     36     36     38     40     22     46
D45V9, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          37                            36
  CLUS_2                          21                            36
  CLUS_3                          21                            38
  CLUS_4                          20                            40
  CLUS_5                          11                            22
  CLUS_6                          13                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       35      7     11     30      5     35
  DEL PEAK  9(3P14.2) WILD-TYPE     49     50     24     46     23     26
D45V10, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          35                            49
  CLUS_2                           7                            50
  CLUS_3                          11                            24
  CLUS_4                          30                            46
  CLUS_5                           5                            23
  CLUS_6                          35                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 10(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED       27      3      6     10      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     96    184     30     66     18
D46V1, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                            3                            184
  CLUS_3                            6                             30
  CLUS_4                           10                             66
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       28     11      2      2
  DEL PEAK 10(3Q26.31) WILD-TYPE     96    110     40    104
D46V2, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           28                             96
  CLUS_2                           11                            110
  CLUS_3                            2                             40
  CLUS_4                            2                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        2     11     13      8      5
  DEL PEAK 10(3Q26.31) WILD-TYPE     28     81     69     85     54
D46V3, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           11                             81
  CLUS_3                           13                             69
  CLUS_4                            8                             85
  CLUS_5                            5                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       16      7     10      6
  DEL PEAK 10(3Q26.31) WILD-TYPE    124     51     68     74
D46V4, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           16                            124
  CLUS_2                            7                             51
  CLUS_3                           10                             68
  CLUS_4                            6                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        2      2      1      6     14
  DEL PEAK 10(3Q26.31) WILD-TYPE     60     60     43     34     50
D46V5, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            2                             60
  CLUS_2                            2                             60
  CLUS_3                            1                             43
  CLUS_4                            6                             34
  CLUS_5                           14                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       17      1      7
  DEL PEAK 10(3Q26.31) WILD-TYPE     93     56     98
D46V6, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           17                             93
  CLUS_2                            1                             56
  CLUS_3                            7                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED        9      7     30
  DEL PEAK 10(3Q26.31) WILD-TYPE    163    123    102
D46V7, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            9                            163
  CLUS_2                            7                            123
  CLUS_3                           30                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       20      4     22
  DEL PEAK 10(3Q26.31) WILD-TYPE    223     78     87
D46V8, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           20                            223
  CLUS_2                            4                             78
  CLUS_3                           22                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED       16      5      3      4      6      2
  DEL PEAK 10(3Q26.31) WILD-TYPE     57     52     56     56     27     57
D46V9, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           16                             57
  CLUS_2                            5                             52
  CLUS_3                            3                             56
  CLUS_4                            4                             56
  CLUS_5                            6                             27
  CLUS_6                            2                             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED        9      3      1      9      0     14
  DEL PEAK 10(3Q26.31) WILD-TYPE     75     54     34     67     28     47
D46V10, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            9                             75
  CLUS_2                            3                             54
  CLUS_3                            1                             34
  CLUS_4                            9                             67
  CLUS_5                            0                             28
  CLUS_6                           14                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 11(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       76     33     12     44      4
  DEL PEAK 11(4P16.3) WILD-TYPE     47    154     24     32     15
D47V1, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          76                            47
  CLUS_2                          33                           154
  CLUS_3                          12                            24
  CLUS_4                          44                            32
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       70     39      6     35
  DEL PEAK 11(4P16.3) WILD-TYPE     54     82     36     71
D47V2, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          39                            82
  CLUS_3                           6                            36
  CLUS_4                          35                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED        9     31     33     38     27
  DEL PEAK 11(4P16.3) WILD-TYPE     21     61     49     55     32
D47V3, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                          31                            61
  CLUS_3                          33                            49
  CLUS_4                          38                            55
  CLUS_5                          27                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       61     19     28     30
  DEL PEAK 11(4P16.3) WILD-TYPE     79     39     50     50
D47V4, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          61                            79
  CLUS_2                          19                            39
  CLUS_3                          28                            50
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       11     23     14     12     38
  DEL PEAK 11(4P16.3) WILD-TYPE     51     39     30     28     26
D47V5, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          11                            51
  CLUS_2                          23                            39
  CLUS_3                          14                            30
  CLUS_4                          12                            28
  CLUS_5                          38                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       50     21     27
  DEL PEAK 11(4P16.3) WILD-TYPE     60     36     78
D47V6, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          50                            60
  CLUS_2                          21                            36
  CLUS_3                          27                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       48     49     71
  DEL PEAK 11(4P16.3) WILD-TYPE    124     81     61
D47V7, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          48                           124
  CLUS_2                          49                            81
  CLUS_3                          71                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       71     27     70
  DEL PEAK 11(4P16.3) WILD-TYPE    172     55     39
D47V8, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          71                           172
  CLUS_2                          27                            55
  CLUS_3                          70                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P16.3) MUTATED       41     21     12     19     17     24
  DEL PEAK 11(4P16.3) WILD-TYPE     32     36     47     41     16     35
D47V9, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          41                            32
  CLUS_2                          21                            36
  CLUS_3                          12                            47
  CLUS_4                          19                            41
  CLUS_5                          17                            16
  CLUS_6                          24                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P16.3) MUTATED       27     21      3     28      8     47
  DEL PEAK 11(4P16.3) WILD-TYPE     57     36     32     48     20     14
D47V10, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          27                            57
  CLUS_2                          21                            36
  CLUS_3                           3                            32
  CLUS_4                          28                            48
  CLUS_5                           8                            20
  CLUS_6                          47                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 12(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       83     30     17     55      8
  DEL PEAK 12(4Q22.1) WILD-TYPE     40    157     19     21     11
D48V1, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          83                            40
  CLUS_2                          30                           157
  CLUS_3                          17                            19
  CLUS_4                          55                            21
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       77     52      6     37
  DEL PEAK 12(4Q22.1) WILD-TYPE     47     69     36     69
D48V2, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          77                            47
  CLUS_2                          52                            69
  CLUS_3                           6                            36
  CLUS_4                          37                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       14     41     35     37     25
  DEL PEAK 12(4Q22.1) WILD-TYPE     16     51     47     56     34
D48V3, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          41                            51
  CLUS_3                          35                            47
  CLUS_4                          37                            56
  CLUS_5                          25                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       72     21     30     29
  DEL PEAK 12(4Q22.1) WILD-TYPE     68     37     48     51
D48V4, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          72                            68
  CLUS_2                          21                            37
  CLUS_3                          30                            48
  CLUS_4                          29                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       18     21     19     19     37
  DEL PEAK 12(4Q22.1) WILD-TYPE     44     41     25     21     27
D48V5, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          18                            44
  CLUS_2                          21                            41
  CLUS_3                          19                            25
  CLUS_4                          19                            21
  CLUS_5                          37                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       53     21     40
  DEL PEAK 12(4Q22.1) WILD-TYPE     57     36     65
D48V6, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          53                            57
  CLUS_2                          21                            36
  CLUS_3                          40                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       65     49     75
  DEL PEAK 12(4Q22.1) WILD-TYPE    107     81     57
D48V7, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          65                           107
  CLUS_2                          49                            81
  CLUS_3                          75                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       94     28     67
  DEL PEAK 12(4Q22.1) WILD-TYPE    149     54     42
D48V8, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          94                           149
  CLUS_2                          28                            54
  CLUS_3                          67                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       37     24     24     26     14     21
  DEL PEAK 12(4Q22.1) WILD-TYPE     36     33     35     34     19     38
D48V9, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          37                            36
  CLUS_2                          24                            33
  CLUS_3                          24                            35
  CLUS_4                          26                            34
  CLUS_5                          14                            19
  CLUS_6                          21                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       39     18      8     33      8     40
  DEL PEAK 12(4Q22.1) WILD-TYPE     45     39     27     43     20     21
D48V10, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          39                            45
  CLUS_2                          18                            39
  CLUS_3                           8                            27
  CLUS_4                          33                            43
  CLUS_5                           8                            20
  CLUS_6                          40                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 13(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       88     31     14     59      8
  DEL PEAK 13(4Q34.3) WILD-TYPE     35    156     22     17     11
D49V1, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          88                            35
  CLUS_2                          31                           156
  CLUS_3                          14                            22
  CLUS_4                          59                            17
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       86     49      4     42
  DEL PEAK 13(4Q34.3) WILD-TYPE     38     72     38     64
D49V2, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          86                            38
  CLUS_2                          49                            72
  CLUS_3                           4                            38
  CLUS_4                          42                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       14     43     38     40     26
  DEL PEAK 13(4Q34.3) WILD-TYPE     16     49     44     53     33
D49V3, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          43                            49
  CLUS_3                          38                            44
  CLUS_4                          40                            53
  CLUS_5                          26                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       74     17     38     32
  DEL PEAK 13(4Q34.3) WILD-TYPE     66     41     40     48
D49V4, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          74                            66
  CLUS_2                          17                            41
  CLUS_3                          38                            40
  CLUS_4                          32                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       14     22     19     17     41
  DEL PEAK 13(4Q34.3) WILD-TYPE     48     40     25     23     23
D49V5, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          14                            48
  CLUS_2                          22                            40
  CLUS_3                          19                            25
  CLUS_4                          17                            23
  CLUS_5                          41                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       54     21     38
  DEL PEAK 13(4Q34.3) WILD-TYPE     56     36     67
D49V6, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          54                            56
  CLUS_2                          21                            36
  CLUS_3                          38                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       63     47     88
  DEL PEAK 13(4Q34.3) WILD-TYPE    109     83     44
D49V7, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          63                           109
  CLUS_2                          47                            83
  CLUS_3                          88                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       96     27     75
  DEL PEAK 13(4Q34.3) WILD-TYPE    147     55     34
D49V8, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          96                           147
  CLUS_2                          27                            55
  CLUS_3                          75                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       46     25     21     26     18     23
  DEL PEAK 13(4Q34.3) WILD-TYPE     27     32     38     34     15     36
D49V9, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          46                            27
  CLUS_2                          25                            32
  CLUS_3                          21                            38
  CLUS_4                          26                            34
  CLUS_5                          18                            15
  CLUS_6                          23                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       44     20      7     35      8     45
  DEL PEAK 13(4Q34.3) WILD-TYPE     40     37     28     41     20     16
D49V10, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          44                            40
  CLUS_2                          20                            37
  CLUS_3                           7                            28
  CLUS_4                          35                            41
  CLUS_5                           8                            20
  CLUS_6                          45                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 14(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       92     16     11     41     10
  DEL PEAK 14(5Q12.1) WILD-TYPE     31    171     25     35      9
D50V1, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          92                            31
  CLUS_2                          16                           171
  CLUS_3                          11                            25
  CLUS_4                          41                            35
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       92     39      4     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     32     82     38     85
D50V2, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          92                            32
  CLUS_2                          39                            82
  CLUS_3                           4                            38
  CLUS_4                          21                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       11     36     36     24     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     19     56     46     69     38
D50V3, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          36                            56
  CLUS_3                          36                            46
  CLUS_4                          24                            69
  CLUS_5                          21                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       65     14     32     17
  DEL PEAK 14(5Q12.1) WILD-TYPE     75     44     46     63
D50V4, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          65                            75
  CLUS_2                          14                            44
  CLUS_3                          32                            46
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       17      4     11     15     44
  DEL PEAK 14(5Q12.1) WILD-TYPE     45     58     33     25     20
D50V5, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          17                            45
  CLUS_2                           4                            58
  CLUS_3                          11                            33
  CLUS_4                          15                            25
  CLUS_5                          44                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       52      6     33
  DEL PEAK 14(5Q12.1) WILD-TYPE     58     51     72
D50V6, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          52                            58
  CLUS_2                           6                            51
  CLUS_3                          33                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       54     24     89
  DEL PEAK 14(5Q12.1) WILD-TYPE    118    106     43
D50V7, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          54                           118
  CLUS_2                          24                           106
  CLUS_3                          89                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       77     11     79
  DEL PEAK 14(5Q12.1) WILD-TYPE    166     71     30
D50V8, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          77                           166
  CLUS_2                          11                            71
  CLUS_3                          79                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       49     23     21     21     14     11
  DEL PEAK 14(5Q12.1) WILD-TYPE     24     34     38     39     19     48
D50V9, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          49                            24
  CLUS_2                          23                            34
  CLUS_3                          21                            38
  CLUS_4                          21                            39
  CLUS_5                          14                            19
  CLUS_6                          11                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       33      8      6     35      5     52
  DEL PEAK 14(5Q12.1) WILD-TYPE     51     49     29     41     23      9
D50V10, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          33                            51
  CLUS_2                           8                            49
  CLUS_3                           6                            29
  CLUS_4                          35                            41
  CLUS_5                           5                            23
  CLUS_6                          52                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 15(5Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       90     12     11     35     10
  DEL PEAK 15(5Q23.2) WILD-TYPE     33    175     25     41      9
D51V1, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          90                            33
  CLUS_2                          12                           175
  CLUS_3                          11                            25
  CLUS_4                          35                            41
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       88     34      6     17
  DEL PEAK 15(5Q23.2) WILD-TYPE     36     87     36     89
D51V2, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          88                            36
  CLUS_2                          34                            87
  CLUS_3                           6                            36
  CLUS_4                          17                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       11     32     37     24     19
  DEL PEAK 15(5Q23.2) WILD-TYPE     19     60     45     69     40
D51V3, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          32                            60
  CLUS_3                          37                            45
  CLUS_4                          24                            69
  CLUS_5                          19                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       62     12     31     18
  DEL PEAK 15(5Q23.2) WILD-TYPE     78     46     47     62
D51V4, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          62                            78
  CLUS_2                          12                            46
  CLUS_3                          31                            47
  CLUS_4                          18                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       15      3      9     13     43
  DEL PEAK 15(5Q23.2) WILD-TYPE     47     59     35     27     21
D51V5, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          15                            47
  CLUS_2                           3                            59
  CLUS_3                           9                            35
  CLUS_4                          13                            27
  CLUS_5                          43                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       47      5     31
  DEL PEAK 15(5Q23.2) WILD-TYPE     63     52     74
D51V6, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          47                            63
  CLUS_2                           5                            52
  CLUS_3                          31                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       48     18     89
  DEL PEAK 15(5Q23.2) WILD-TYPE    124    112     43
D51V7, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          48                           124
  CLUS_2                          18                           112
  CLUS_3                          89                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       75      9     71
  DEL PEAK 15(5Q23.2) WILD-TYPE    168     73     38
D51V8, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          75                           168
  CLUS_2                           9                            73
  CLUS_3                          71                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.2) MUTATED       50     21     16     18     13     10
  DEL PEAK 15(5Q23.2) WILD-TYPE     23     36     43     42     20     49
D51V9, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          50                            23
  CLUS_2                          21                            36
  CLUS_3                          16                            43
  CLUS_4                          18                            42
  CLUS_5                          13                            20
  CLUS_6                          10                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.2) MUTATED       34      7      5     30      6     46
  DEL PEAK 15(5Q23.2) WILD-TYPE     50     50     30     46     22     15
D51V10, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          34                            50
  CLUS_2                           7                            50
  CLUS_3                           5                            30
  CLUS_4                          30                            46
  CLUS_5                           6                            22
  CLUS_6                          46                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 16(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED       51     21      8     30      5
  DEL PEAK 16(6P25.3) WILD-TYPE     72    166     28     46     14
D52V1, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          51                            72
  CLUS_2                          21                           166
  CLUS_3                           8                            28
  CLUS_4                          30                            46
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       54     33      3     18
  DEL PEAK 16(6P25.3) WILD-TYPE     70     88     39     88
D52V2, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          54                            70
  CLUS_2                          33                            88
  CLUS_3                           3                            39
  CLUS_4                          18                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        8     26     23     14     18
  DEL PEAK 16(6P25.3) WILD-TYPE     22     66     59     79     41
D52V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          26                            66
  CLUS_3                          23                            59
  CLUS_4                          14                            79
  CLUS_5                          18                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       42     16     14     17
  DEL PEAK 16(6P25.3) WILD-TYPE     98     42     64     63
D52V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          42                            98
  CLUS_2                          16                            42
  CLUS_3                          14                            64
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        7      5     13      7     25
  DEL PEAK 16(6P25.3) WILD-TYPE     55     57     31     33     39
D52V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            55
  CLUS_2                           5                            57
  CLUS_3                          13                            31
  CLUS_4                           7                            33
  CLUS_5                          25                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       31      5     21
  DEL PEAK 16(6P25.3) WILD-TYPE     79     52     84
D52V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          31                            79
  CLUS_2                           5                            52
  CLUS_3                          21                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       34     23     56
  DEL PEAK 16(6P25.3) WILD-TYPE    138    107     76
D52V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          34                           138
  CLUS_2                          23                           107
  CLUS_3                          56                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       55     11     47
  DEL PEAK 16(6P25.3) WILD-TYPE    188     71     62
D52V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          55                           188
  CLUS_2                          11                            71
  CLUS_3                          47                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED       26     18     17     15      7     10
  DEL PEAK 16(6P25.3) WILD-TYPE     47     39     42     45     26     49
D52V9, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          26                            47
  CLUS_2                          18                            39
  CLUS_3                          17                            42
  CLUS_4                          15                            45
  CLUS_5                           7                            26
  CLUS_6                          10                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED       28      7      6     25      2     25
  DEL PEAK 16(6P25.3) WILD-TYPE     56     50     29     51     26     36
D52V10, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          28                            56
  CLUS_2                           7                            50
  CLUS_3                           6                            29
  CLUS_4                          25                            51
  CLUS_5                           2                            26
  CLUS_6                          25                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 17(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED       30     13     10     30      6
  DEL PEAK 17(6Q14.1) WILD-TYPE     93    174     26     46     13
D53V1, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          30                            93
  CLUS_2                          13                           174
  CLUS_3                          10                            26
  CLUS_4                          30                            46
  CLUS_5                           6                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED       41     20      3     15
  DEL PEAK 17(6Q14.1) WILD-TYPE     83    101     39     91
D53V2, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          41                            83
  CLUS_2                          20                           101
  CLUS_3                           3                            39
  CLUS_4                          15                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED        7     17     20     11     14
  DEL PEAK 17(6Q14.1) WILD-TYPE     23     75     62     82     45
D53V3, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          17                            75
  CLUS_3                          20                            62
  CLUS_4                          11                            82
  CLUS_5                          14                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED       35      8     12     14
  DEL PEAK 17(6Q14.1) WILD-TYPE    105     50     66     66
D53V4, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          35                           105
  CLUS_2                           8                            50
  CLUS_3                          12                            66
  CLUS_4                          14                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED        7      4     15      6     16
  DEL PEAK 17(6Q14.1) WILD-TYPE     55     58     29     34     48
D53V5, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           7                            55
  CLUS_2                           4                            58
  CLUS_3                          15                            29
  CLUS_4                           6                            34
  CLUS_5                          16                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       21      4     23
  DEL PEAK 17(6Q14.1) WILD-TYPE     89     53     82
D53V6, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          21                            89
  CLUS_2                           4                            53
  CLUS_3                          23                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       31     21     35
  DEL PEAK 17(6Q14.1) WILD-TYPE    141    109     97
D53V7, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          31                           141
  CLUS_2                          21                           109
  CLUS_3                          35                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       50      8     29
  DEL PEAK 17(6Q14.1) WILD-TYPE    193     74     80
D53V8, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          50                           193
  CLUS_2                           8                            74
  CLUS_3                          29                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q14.1) MUTATED       17     12     12     14      5      5
  DEL PEAK 17(6Q14.1) WILD-TYPE     56     45     47     46     28     54
D53V9, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                          12                            45
  CLUS_3                          12                            47
  CLUS_4                          14                            46
  CLUS_5                           5                            28
  CLUS_6                           5                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q14.1) MUTATED       18      3      4     22      4     14
  DEL PEAK 17(6Q14.1) WILD-TYPE     66     54     31     54     24     47
D53V10, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          18                            66
  CLUS_2                           3                            54
  CLUS_3                           4                            31
  CLUS_4                          22                            54
  CLUS_5                           4                            24
  CLUS_6                          14                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 18(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED       26     11     11     24      6
  DEL PEAK 18(6Q24.3) WILD-TYPE     97    176     25     52     13
D54V1, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          26                            97
  CLUS_2                          11                           176
  CLUS_3                          11                            25
  CLUS_4                          24                            52
  CLUS_5                           6                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       35     15      3     15
  DEL PEAK 18(6Q24.3) WILD-TYPE     89    106     39     91
D54V2, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          35                            89
  CLUS_2                          15                           106
  CLUS_3                           3                            39
  CLUS_4                          15                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED        4     14     16     11     12
  DEL PEAK 18(6Q24.3) WILD-TYPE     26     78     66     82     47
D54V3, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          14                            78
  CLUS_3                          16                            66
  CLUS_4                          11                            82
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       27      7     11     12
  DEL PEAK 18(6Q24.3) WILD-TYPE    113     51     67     68
D54V4, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          27                           113
  CLUS_2                           7                            51
  CLUS_3                          11                            67
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED        6      4      9      6     16
  DEL PEAK 18(6Q24.3) WILD-TYPE     56     58     35     34     48
D54V5, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           6                            56
  CLUS_2                           4                            58
  CLUS_3                           9                            35
  CLUS_4                           6                            34
  CLUS_5                          16                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       19      6     16
  DEL PEAK 18(6Q24.3) WILD-TYPE     91     51     89
D54V6, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          19                            91
  CLUS_2                           6                            51
  CLUS_3                          16                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       29     17     28
  DEL PEAK 18(6Q24.3) WILD-TYPE    143    113    104
D54V7, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          29                           143
  CLUS_2                          17                           113
  CLUS_3                          28                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       42      7     25
  DEL PEAK 18(6Q24.3) WILD-TYPE    201     75     84
D54V8, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          42                           201
  CLUS_2                           7                            75
  CLUS_3                          25                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q24.3) MUTATED       17     15      8      9      4      4
  DEL PEAK 18(6Q24.3) WILD-TYPE     56     42     51     51     29     55
D54V9, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                          15                            42
  CLUS_3                           8                            51
  CLUS_4                           9                            51
  CLUS_5                           4                            29
  CLUS_6                           4                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q24.3) MUTATED       17      2      2     15      5     16
  DEL PEAK 18(6Q24.3) WILD-TYPE     67     55     33     61     23     45
D54V10, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          17                            67
  CLUS_2                           2                            55
  CLUS_3                           2                            33
  CLUS_4                          15                            61
  CLUS_5                           5                            23
  CLUS_6                          16                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 19(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       36     21     12     29      4
  DEL PEAK 19(6Q26) WILD-TYPE     87    166     24     47     15
D55V1, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        36                          87
  CLUS_2                        21                         166
  CLUS_3                        12                          24
  CLUS_4                        29                          47
  CLUS_5                         4                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       40     24      6     21
  DEL PEAK 19(6Q26) WILD-TYPE     84     97     36     85
D55V2, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        40                          84
  CLUS_2                        24                          97
  CLUS_3                         6                          36
  CLUS_4                        21                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED        7     19     16     16     18
  DEL PEAK 19(6Q26) WILD-TYPE     23     73     66     77     41
D55V3, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                         7                          23
  CLUS_2                        19                          73
  CLUS_3                        16                          66
  CLUS_4                        16                          77
  CLUS_5                        18                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       37      9     14     16
  DEL PEAK 19(6Q26) WILD-TYPE    103     49     64     64
D55V4, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        37                         103
  CLUS_2                         9                          49
  CLUS_3                        14                          64
  CLUS_4                        16                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       13      4     15      5     21
  DEL PEAK 19(6Q26) WILD-TYPE     49     58     29     35     43
D55V5, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        13                          49
  CLUS_2                         4                          58
  CLUS_3                        15                          29
  CLUS_4                         5                          35
  CLUS_5                        21                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       31      5     22
  DEL PEAK 19(6Q26) WILD-TYPE     79     52     83
D55V6, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        31                          79
  CLUS_2                         5                          52
  CLUS_3                        22                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       36     24     40
  DEL PEAK 19(6Q26) WILD-TYPE    136    106     92
D55V7, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        36                         136
  CLUS_2                        24                         106
  CLUS_3                        40                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       57      9     34
  DEL PEAK 19(6Q26) WILD-TYPE    186     73     75
D55V8, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        57                         186
  CLUS_2                         9                          73
  CLUS_3                        34                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(6Q26) MUTATED       21     16     15     14      6      4
  DEL PEAK 19(6Q26) WILD-TYPE     52     41     44     46     27     55
D55V9, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        21                          52
  CLUS_2                        16                          41
  CLUS_3                        15                          44
  CLUS_4                        14                          46
  CLUS_5                         6                          27
  CLUS_6                         4                          55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(6Q26) MUTATED       18      3      5     23      6     21
  DEL PEAK 19(6Q26) WILD-TYPE     66     54     30     53     22     40
D55V10, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        18                          66
  CLUS_2                         3                          54
  CLUS_3                         5                          30
  CLUS_4                        23                          53
  CLUS_5                         6                          22
  CLUS_6                        21                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 20(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       33     10      1     23      4
  DEL PEAK 20(7Q31.1) WILD-TYPE     90    177     35     53     15
D56V1, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          33                            90
  CLUS_2                          10                           177
  CLUS_3                           1                            35
  CLUS_4                          23                            53
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       30     23      3      7
  DEL PEAK 20(7Q31.1) WILD-TYPE     94     98     39     99
D56V2, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          30                            94
  CLUS_2                          23                            98
  CLUS_3                           3                            39
  CLUS_4                           7                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED        5     17     14     16      7
  DEL PEAK 20(7Q31.1) WILD-TYPE     25     75     68     77     52
D56V3, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          17                            75
  CLUS_3                          14                            68
  CLUS_4                          16                            77
  CLUS_5                           7                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       23      6     17     13
  DEL PEAK 20(7Q31.1) WILD-TYPE    117     52     61     67
D56V4, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          23                           117
  CLUS_2                           6                            52
  CLUS_3                          17                            61
  CLUS_4                          13                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED        5      7      5      6     19
  DEL PEAK 20(7Q31.1) WILD-TYPE     57     55     39     34     45
D56V5, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           5                            57
  CLUS_2                           7                            55
  CLUS_3                           5                            39
  CLUS_4                           6                            34
  CLUS_5                          19                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       22      7     13
  DEL PEAK 20(7Q31.1) WILD-TYPE     88     50     92
D56V6, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          22                            88
  CLUS_2                           7                            50
  CLUS_3                          13                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       23     11     34
  DEL PEAK 20(7Q31.1) WILD-TYPE    149    119     98
D56V7, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          23                           149
  CLUS_2                          11                           119
  CLUS_3                          34                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       32     10     26
  DEL PEAK 20(7Q31.1) WILD-TYPE    211     72     83
D56V8, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          32                           211
  CLUS_2                          10                            72
  CLUS_3                          26                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q31.1) MUTATED       18      8      7     13      5      5
  DEL PEAK 20(7Q31.1) WILD-TYPE     55     49     52     47     28     54
D56V9, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          18                            55
  CLUS_2                           8                            49
  CLUS_3                           7                            52
  CLUS_4                          13                            47
  CLUS_5                           5                            28
  CLUS_6                           5                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q31.1) MUTATED       17      6      2     14      2     15
  DEL PEAK 20(7Q31.1) WILD-TYPE     67     51     33     62     26     46
D56V10, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          17                            67
  CLUS_2                           6                            51
  CLUS_3                           2                            33
  CLUS_4                          14                            62
  CLUS_5                           2                            26
  CLUS_6                          15                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 21(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED       50      8      1     31      8
  DEL PEAK 21(7Q36.3) WILD-TYPE     73    179     35     45     11
D57V1, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          50                            73
  CLUS_2                           8                           179
  CLUS_3                           1                            35
  CLUS_4                          31                            45
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       46     29      0     14
  DEL PEAK 21(7Q36.3) WILD-TYPE     78     92     42     92
D57V2, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          46                            78
  CLUS_2                          29                            92
  CLUS_3                           0                            42
  CLUS_4                          14                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED        6     25     23     15     10
  DEL PEAK 21(7Q36.3) WILD-TYPE     24     67     59     78     49
D57V3, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          25                            67
  CLUS_3                          23                            59
  CLUS_4                          15                            78
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       40      8     18     13
  DEL PEAK 21(7Q36.3) WILD-TYPE    100     50     60     67
D57V4, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          40                           100
  CLUS_2                           8                            50
  CLUS_3                          18                            60
  CLUS_4                          13                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED        7      7      7      4     28
  DEL PEAK 21(7Q36.3) WILD-TYPE     55     55     37     36     36
D57V5, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                           7                            55
  CLUS_2                           7                            55
  CLUS_3                           7                            37
  CLUS_4                           4                            36
  CLUS_5                          28                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       33      6     14
  DEL PEAK 21(7Q36.3) WILD-TYPE     77     51     91
D57V6, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          33                            77
  CLUS_2                           6                            51
  CLUS_3                          14                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       33     13     50
  DEL PEAK 21(7Q36.3) WILD-TYPE    139    117     82
D57V7, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          33                           139
  CLUS_2                          13                           117
  CLUS_3                          50                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       44      8     44
  DEL PEAK 21(7Q36.3) WILD-TYPE    199     74     65
D57V8, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          44                           199
  CLUS_2                           8                            74
  CLUS_3                          44                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(7Q36.3) MUTATED       30     10     14     12      9      6
  DEL PEAK 21(7Q36.3) WILD-TYPE     43     47     45     48     24     53
D57V9, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          30                            43
  CLUS_2                          10                            47
  CLUS_3                          14                            45
  CLUS_4                          12                            48
  CLUS_5                           9                            24
  CLUS_6                           6                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(7Q36.3) MUTATED       19      6      2     25      0     29
  DEL PEAK 21(7Q36.3) WILD-TYPE     65     51     33     51     28     32
D57V10, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          19                            65
  CLUS_2                           6                            51
  CLUS_3                           2                            33
  CLUS_4                          25                            51
  CLUS_5                           0                            28
  CLUS_6                          29                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 22(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.3) MUTATED       61     16     16     33      0
  DEL PEAK 22(8P23.3) WILD-TYPE     62    171     20     43     19
D58V1, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          61                            62
  CLUS_2                          16                           171
  CLUS_3                          16                            20
  CLUS_4                          33                            43
  CLUS_5                           0                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.3) MUTATED       61     27      3     22
  DEL PEAK 22(8P23.3) WILD-TYPE     63     94     39     84
D58V2, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          61                            63
  CLUS_2                          27                            94
  CLUS_3                           3                            39
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.3) MUTATED       15     23     28     20     17
  DEL PEAK 22(8P23.3) WILD-TYPE     15     69     54     73     42
D58V3, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          15                            15
  CLUS_2                          23                            69
  CLUS_3                          28                            54
  CLUS_4                          20                            73
  CLUS_5                          17                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.3) MUTATED       51     15     17     20
  DEL PEAK 22(8P23.3) WILD-TYPE     89     43     61     60
D58V4, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          51                            89
  CLUS_2                          15                            43
  CLUS_3                          17                            61
  CLUS_4                          20                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.3) MUTATED       11      9      7     11     34
  DEL PEAK 22(8P23.3) WILD-TYPE     51     53     37     29     30
D58V5, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          11                            51
  CLUS_2                           9                            53
  CLUS_3                           7                            37
  CLUS_4                          11                            29
  CLUS_5                          34                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.3) MUTATED       39     10     23
  DEL PEAK 22(8P23.3) WILD-TYPE     71     47     82
D58V6, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          39                            71
  CLUS_2                          10                            47
  CLUS_3                          23                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.3) MUTATED       42     24     58
  DEL PEAK 22(8P23.3) WILD-TYPE    130    106     74
D58V7, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          42                           130
  CLUS_2                          24                           106
  CLUS_3                          58                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.3) MUTATED       60     13     51
  DEL PEAK 22(8P23.3) WILD-TYPE    183     69     58
D58V8, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          60                           183
  CLUS_2                          13                            69
  CLUS_3                          51                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(8P23.3) MUTATED       33     15     15     13     10     14
  DEL PEAK 22(8P23.3) WILD-TYPE     40     42     44     47     23     45
D58V9, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          33                            40
  CLUS_2                          15                            42
  CLUS_3                          15                            44
  CLUS_4                          13                            47
  CLUS_5                          10                            23
  CLUS_6                          14                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(8P23.3) MUTATED       27      5      2     28      6     32
  DEL PEAK 22(8P23.3) WILD-TYPE     57     52     33     48     22     29
D58V10, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          27                            57
  CLUS_2                           5                            52
  CLUS_3                           2                            33
  CLUS_4                          28                            48
  CLUS_5                           6                            22
  CLUS_6                          32                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 23(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       72     27     23     61     12
  DEL PEAK 23(9P23) WILD-TYPE     51    160     13     15      7
D59V1, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        72                          51
  CLUS_2                        27                         160
  CLUS_3                        23                          13
  CLUS_4                        61                          15
  CLUS_5                        12                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       84     46      9     37
  DEL PEAK 23(9P23) WILD-TYPE     40     75     33     69
D59V2, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        84                          40
  CLUS_2                        46                          75
  CLUS_3                         9                          33
  CLUS_4                        37                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       14     39     38     39     31
  DEL PEAK 23(9P23) WILD-TYPE     16     53     44     54     28
D59V3, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        14                          16
  CLUS_2                        39                          53
  CLUS_3                        38                          44
  CLUS_4                        39                          54
  CLUS_5                        31                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       78     13     33     37
  DEL PEAK 23(9P23) WILD-TYPE     62     45     45     43
D59V4, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        78                          62
  CLUS_2                        13                          45
  CLUS_3                        33                          45
  CLUS_4                        37                          43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       13     19     22     14     40
  DEL PEAK 23(9P23) WILD-TYPE     49     43     22     26     24
D59V5, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        13                          49
  CLUS_2                        19                          43
  CLUS_3                        22                          22
  CLUS_4                        14                          26
  CLUS_5                        40                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       52     18     38
  DEL PEAK 23(9P23) WILD-TYPE     58     39     67
D59V6, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        52                          58
  CLUS_2                        18                          39
  CLUS_3                        38                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       62     49     81
  DEL PEAK 23(9P23) WILD-TYPE    110     81     51
D59V7, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        62                         110
  CLUS_2                        49                          81
  CLUS_3                        81                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       97     27     68
  DEL PEAK 23(9P23) WILD-TYPE    146     55     41
D59V8, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        97                         146
  CLUS_2                        27                          55
  CLUS_3                        68                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P23) MUTATED       41     24     27     25     15     22
  DEL PEAK 23(9P23) WILD-TYPE     32     33     32     35     18     37
D59V9, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        41                          32
  CLUS_2                        24                          33
  CLUS_3                        27                          32
  CLUS_4                        25                          35
  CLUS_5                        15                          18
  CLUS_6                        22                          37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P23) MUTATED       39     13     13     38     12     39
  DEL PEAK 23(9P23) WILD-TYPE     45     44     22     38     16     22
D59V10, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        39                          45
  CLUS_2                        13                          44
  CLUS_3                        13                          22
  CLUS_4                        38                          38
  CLUS_5                        12                          16
  CLUS_6                        39                          22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 24(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       73     29     21     59     11
  DEL PEAK 24(9P21.3) WILD-TYPE     50    158     15     17      8
D60V1, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          73                            50
  CLUS_2                          29                           158
  CLUS_3                          21                            15
  CLUS_4                          59                            17
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED       90     47      1     37
  DEL PEAK 24(9P21.3) WILD-TYPE     34     74     41     69
D60V2, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          90                            34
  CLUS_2                          47                            74
  CLUS_3                           1                            41
  CLUS_4                          37                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       18     37     35     42     25
  DEL PEAK 24(9P21.3) WILD-TYPE     12     55     47     51     34
D60V3, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          37                            55
  CLUS_3                          35                            47
  CLUS_4                          42                            51
  CLUS_5                          25                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED       76     14     31     36
  DEL PEAK 24(9P21.3) WILD-TYPE     64     44     47     44
D60V4, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          76                            64
  CLUS_2                          14                            44
  CLUS_3                          31                            47
  CLUS_4                          36                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED        9     19     22     16     42
  DEL PEAK 24(9P21.3) WILD-TYPE     53     43     22     24     22
D60V5, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                           9                            53
  CLUS_2                          19                            43
  CLUS_3                          22                            22
  CLUS_4                          16                            24
  CLUS_5                          42                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       53     15     40
  DEL PEAK 24(9P21.3) WILD-TYPE     57     42     65
D60V6, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          53                            57
  CLUS_2                          15                            42
  CLUS_3                          40                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       59     48     83
  DEL PEAK 24(9P21.3) WILD-TYPE    113     82     49
D60V7, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          59                           113
  CLUS_2                          48                            82
  CLUS_3                          83                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       94     26     70
  DEL PEAK 24(9P21.3) WILD-TYPE    149     56     39
D60V8, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          94                           149
  CLUS_2                          26                            56
  CLUS_3                          70                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.3) MUTATED       42     24     23     24     19     22
  DEL PEAK 24(9P21.3) WILD-TYPE     31     33     36     36     14     37
D60V9, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          42                            31
  CLUS_2                          24                            33
  CLUS_3                          23                            36
  CLUS_4                          24                            36
  CLUS_5                          19                            14
  CLUS_6                          22                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.3) MUTATED       42     15      9     38      9     41
  DEL PEAK 24(9P21.3) WILD-TYPE     42     42     26     38     19     20
D60V10, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          42                            42
  CLUS_2                          15                            42
  CLUS_3                           9                            26
  CLUS_4                          38                            38
  CLUS_5                           9                            19
  CLUS_6                          41                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 25(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED       48     12     12     37      5
  DEL PEAK 25(9Q21.11) WILD-TYPE     75    175     24     39     14
D61V1, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           48                             75
  CLUS_2                           12                            175
  CLUS_3                           12                             24
  CLUS_4                           37                             39
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       53     26      2     24
  DEL PEAK 25(9Q21.11) WILD-TYPE     71     95     40     82
D61V2, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           53                             71
  CLUS_2                           26                             95
  CLUS_3                            2                             40
  CLUS_4                           24                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED        8     20     20     26     15
  DEL PEAK 25(9Q21.11) WILD-TYPE     22     72     62     67     44
D61V3, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           20                             72
  CLUS_3                           20                             62
  CLUS_4                           26                             67
  CLUS_5                           15                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       46      7     17     19
  DEL PEAK 25(9Q21.11) WILD-TYPE     94     51     61     61
D61V4, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                            7                             51
  CLUS_3                           17                             61
  CLUS_4                           19                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED        8     13     12      7     25
  DEL PEAK 25(9Q21.11) WILD-TYPE     54     49     32     33     39
D61V5, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            8                             54
  CLUS_2                           13                             49
  CLUS_3                           12                             32
  CLUS_4                            7                             33
  CLUS_5                           25                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       30     12     23
  DEL PEAK 25(9Q21.11) WILD-TYPE     80     45     82
D61V6, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           30                             80
  CLUS_2                           12                             45
  CLUS_3                           23                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       30     27     55
  DEL PEAK 25(9Q21.11) WILD-TYPE    142    103     77
D61V7, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           30                            142
  CLUS_2                           27                            103
  CLUS_3                           55                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       47     15     50
  DEL PEAK 25(9Q21.11) WILD-TYPE    196     67     59
D61V8, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           47                            196
  CLUS_2                           15                             67
  CLUS_3                           50                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       29     13     12     13     10     15
  DEL PEAK 25(9Q21.11) WILD-TYPE     44     44     47     47     23     44
D61V9, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                           13                             44
  CLUS_3                           12                             47
  CLUS_4                           13                             47
  CLUS_5                           10                             23
  CLUS_6                           15                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       20      8      5     21      8     30
  DEL PEAK 25(9Q21.11) WILD-TYPE     64     49     30     55     20     31
D61V10, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           20                             64
  CLUS_2                            8                             49
  CLUS_3                            5                             30
  CLUS_4                           21                             55
  CLUS_5                            8                             20
  CLUS_6                           30                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 26(10P12.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P12.31) MUTATED       34     11      3     12      7
  DEL PEAK 26(10P12.31) WILD-TYPE     89    176     33     64     12
D62V1, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            34                              89
  CLUS_2                            11                             176
  CLUS_3                             3                              33
  CLUS_4                            12                              64
  CLUS_5                             7                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P12.31) MUTATED       31     15      2     11
  DEL PEAK 26(10P12.31) WILD-TYPE     93    106     40     95
D62V2, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            31                              93
  CLUS_2                            15                             106
  CLUS_3                             2                              40
  CLUS_4                            11                              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P12.31) MUTATED        5     14     12     13      7
  DEL PEAK 26(10P12.31) WILD-TYPE     25     78     70     80     52
D62V3, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            14                              78
  CLUS_3                            12                              70
  CLUS_4                            13                              80
  CLUS_5                             7                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P12.31) MUTATED       25      4     13      9
  DEL PEAK 26(10P12.31) WILD-TYPE    115     54     65     71
D62V4, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            25                             115
  CLUS_2                             4                              54
  CLUS_3                            13                              65
  CLUS_4                             9                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P12.31) MUTATED        6      5      6      4     13
  DEL PEAK 26(10P12.31) WILD-TYPE     56     57     38     36     51
D62V5, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                             6                              56
  CLUS_2                             5                              57
  CLUS_3                             6                              38
  CLUS_4                             4                              36
  CLUS_5                            13                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P12.31) MUTATED       15      4     15
  DEL PEAK 26(10P12.31) WILD-TYPE     95     53     90
D62V6, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            15                              95
  CLUS_2                             4                              53
  CLUS_3                            15                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P12.31) MUTATED       20     10     36
  DEL PEAK 26(10P12.31) WILD-TYPE    152    120     96
D62V7, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            20                             152
  CLUS_2                            10                             120
  CLUS_3                            36                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P12.31) MUTATED       35      4     27
  DEL PEAK 26(10P12.31) WILD-TYPE    208     78     82
D62V8, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            35                             208
  CLUS_2                             4                              78
  CLUS_3                            27                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P12.31) MUTATED       14      8      5     10      6      5
  DEL PEAK 26(10P12.31) WILD-TYPE     59     49     54     50     27     54
D62V9, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            14                              59
  CLUS_2                             8                              49
  CLUS_3                             5                              54
  CLUS_4                            10                              50
  CLUS_5                             6                              27
  CLUS_6                             5                              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P12.31) MUTATED       17      4      1      9      3     14
  DEL PEAK 26(10P12.31) WILD-TYPE     67     53     34     67     25     47
D62V10, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            17                              67
  CLUS_2                             4                              53
  CLUS_3                             1                              34
  CLUS_4                             9                              67
  CLUS_5                             3                              25
  CLUS_6                            14                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 27(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED       46      8     11      8      6
  DEL PEAK 27(10Q22.3) WILD-TYPE     77    179     25     68     13
D63V1, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            8                            179
  CLUS_3                           11                             25
  CLUS_4                            8                             68
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       38     15      3     14
  DEL PEAK 27(10Q22.3) WILD-TYPE     86    106     39     92
D63V2, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           38                             86
  CLUS_2                           15                            106
  CLUS_3                            3                             39
  CLUS_4                           14                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED        6     16     14     12     11
  DEL PEAK 27(10Q22.3) WILD-TYPE     24     76     68     81     48
D63V3, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           16                             76
  CLUS_3                           14                             68
  CLUS_4                           12                             81
  CLUS_5                           11                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       30      5     14     10
  DEL PEAK 27(10Q22.3) WILD-TYPE    110     53     64     70
D63V4, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           30                            110
  CLUS_2                            5                             53
  CLUS_3                           14                             64
  CLUS_4                           10                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED        7      3      3      9     19
  DEL PEAK 27(10Q22.3) WILD-TYPE     55     59     41     31     45
D63V5, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            7                             55
  CLUS_2                            3                             59
  CLUS_3                            3                             41
  CLUS_4                            9                             31
  CLUS_5                           19                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       18      4     19
  DEL PEAK 27(10Q22.3) WILD-TYPE     92     53     86
D63V6, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           18                             92
  CLUS_2                            4                             53
  CLUS_3                           19                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       30     11     37
  DEL PEAK 27(10Q22.3) WILD-TYPE    142    119     95
D63V7, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           30                            142
  CLUS_2                           11                            119
  CLUS_3                           37                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       37      6     35
  DEL PEAK 27(10Q22.3) WILD-TYPE    206     76     74
D63V8, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           37                            206
  CLUS_2                            6                             76
  CLUS_3                           35                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q22.3) MUTATED       22      9      7      7      4      7
  DEL PEAK 27(10Q22.3) WILD-TYPE     51     48     52     53     29     52
D63V9, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                            9                             48
  CLUS_3                            7                             52
  CLUS_4                            7                             53
  CLUS_5                            4                             29
  CLUS_6                            7                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q22.3) MUTATED       24      3      2      8      3     16
  DEL PEAK 27(10Q22.3) WILD-TYPE     60     54     33     68     25     45
D63V10, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           24                             60
  CLUS_2                            3                             54
  CLUS_3                            2                             33
  CLUS_4                            8                             68
  CLUS_5                            3                             25
  CLUS_6                           16                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 28(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       66     13     11     18      8
  DEL PEAK 28(10Q23.31) WILD-TYPE     57    174     25     58     11
D64V1, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            66                              57
  CLUS_2                            13                             174
  CLUS_3                            11                              25
  CLUS_4                            18                              58
  CLUS_5                             8                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       57     24      4     17
  DEL PEAK 28(10Q23.31) WILD-TYPE     67     97     38     89
D64V2, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            57                              67
  CLUS_2                            24                              97
  CLUS_3                             4                              38
  CLUS_4                            17                              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       13     23     25     15     14
  DEL PEAK 28(10Q23.31) WILD-TYPE     17     69     57     78     45
D64V3, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            13                              17
  CLUS_2                            23                              69
  CLUS_3                            25                              57
  CLUS_4                            15                              78
  CLUS_5                            14                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       49      9     17     15
  DEL PEAK 28(10Q23.31) WILD-TYPE     91     49     61     65
D64V4, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            49                              91
  CLUS_2                             9                              49
  CLUS_3                            17                              61
  CLUS_4                            15                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED        8      5      8     13     27
  DEL PEAK 28(10Q23.31) WILD-TYPE     54     57     36     27     37
D64V5, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                             8                              54
  CLUS_2                             5                              57
  CLUS_3                             8                              36
  CLUS_4                            13                              27
  CLUS_5                            27                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       26      6     29
  DEL PEAK 28(10Q23.31) WILD-TYPE     84     51     76
D64V6, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            26                              84
  CLUS_2                             6                              51
  CLUS_3                            29                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       46     18     50
  DEL PEAK 28(10Q23.31) WILD-TYPE    126    112     82
D64V7, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            46                             126
  CLUS_2                            18                             112
  CLUS_3                            50                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       55     10     49
  DEL PEAK 28(10Q23.31) WILD-TYPE    188     72     60
D64V8, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            55                             188
  CLUS_2                            10                              72
  CLUS_3                            49                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED       32     12     11     14      9      9
  DEL PEAK 28(10Q23.31) WILD-TYPE     41     45     48     46     24     50
D64V9, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            32                              41
  CLUS_2                            12                              45
  CLUS_3                            11                              48
  CLUS_4                            14                              46
  CLUS_5                             9                              24
  CLUS_6                             9                              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED       31      7      5     16      5     23
  DEL PEAK 28(10Q23.31) WILD-TYPE     53     50     30     60     23     38
D64V10, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            31                              53
  CLUS_2                             7                              50
  CLUS_3                             5                              30
  CLUS_4                            16                              60
  CLUS_5                             5                              23
  CLUS_6                            23                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 29(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       51     10      8     27      1
  DEL PEAK 29(11P15.5) WILD-TYPE     72    177     28     49     18
D65V1, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           51                             72
  CLUS_2                           10                            177
  CLUS_3                            8                             28
  CLUS_4                           27                             49
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       46     22      2     13
  DEL PEAK 29(11P15.5) WILD-TYPE     78     99     40     93
D65V2, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           46                             78
  CLUS_2                           22                             99
  CLUS_3                            2                             40
  CLUS_4                           13                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       12     17     23     16     12
  DEL PEAK 29(11P15.5) WILD-TYPE     18     75     59     77     47
D65V3, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           17                             75
  CLUS_3                           23                             59
  CLUS_4                           16                             77
  CLUS_5                           12                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       46     11     10     13
  DEL PEAK 29(11P15.5) WILD-TYPE     94     47     68     67
D65V4, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                           11                             47
  CLUS_3                           10                             68
  CLUS_4                           13                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED        7      6      6      7     21
  DEL PEAK 29(11P15.5) WILD-TYPE     55     56     38     33     43
D65V5, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                            7                             55
  CLUS_2                            6                             56
  CLUS_3                            6                             38
  CLUS_4                            7                             33
  CLUS_5                           21                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       25      6     16
  DEL PEAK 29(11P15.5) WILD-TYPE     85     51     89
D65V6, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           25                             85
  CLUS_2                            6                             51
  CLUS_3                           16                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       29     20     45
  DEL PEAK 29(11P15.5) WILD-TYPE    143    110     87
D65V7, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           29                            143
  CLUS_2                           20                            110
  CLUS_3                           45                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       47     10     37
  DEL PEAK 29(11P15.5) WILD-TYPE    196     72     72
D65V8, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           47                            196
  CLUS_2                           10                             72
  CLUS_3                           37                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       20      9     14     11      9      7
  DEL PEAK 29(11P15.5) WILD-TYPE     53     48     45     49     24     52
D65V9, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           20                             53
  CLUS_2                            9                             48
  CLUS_3                           14                             45
  CLUS_4                           11                             49
  CLUS_5                            9                             24
  CLUS_6                            7                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       20      8      5     18      0     19
  DEL PEAK 29(11P15.5) WILD-TYPE     64     49     30     58     28     42
D65V10, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           20                             64
  CLUS_2                            8                             49
  CLUS_3                            5                             30
  CLUS_4                           18                             58
  CLUS_5                            0                             28
  CLUS_6                           19                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 30(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED       42     18      7     28      4
  DEL PEAK 30(11Q23.2) WILD-TYPE     81    169     29     48     15
D66V1, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           42                             81
  CLUS_2                           18                            169
  CLUS_3                            7                             29
  CLUS_4                           28                             48
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       42     23      3     21
  DEL PEAK 30(11Q23.2) WILD-TYPE     82     98     39     85
D66V2, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           42                             82
  CLUS_2                           23                             98
  CLUS_3                            3                             39
  CLUS_4                           21                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED        8     23     15     13     15
  DEL PEAK 30(11Q23.2) WILD-TYPE     22     69     67     80     44
D66V3, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           23                             69
  CLUS_3                           15                             67
  CLUS_4                           13                             80
  CLUS_5                           15                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       37      6     19     12
  DEL PEAK 30(11Q23.2) WILD-TYPE    103     52     59     68
D66V4, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           37                            103
  CLUS_2                            6                             52
  CLUS_3                           19                             59
  CLUS_4                           12                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED        5      8     16      9     17
  DEL PEAK 30(11Q23.2) WILD-TYPE     57     54     28     31     47
D66V5, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                            5                             57
  CLUS_2                            8                             54
  CLUS_3                           16                             28
  CLUS_4                            9                             31
  CLUS_5                           17                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       20      8     27
  DEL PEAK 30(11Q23.2) WILD-TYPE     90     49     78
D66V6, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           20                             90
  CLUS_2                            8                             49
  CLUS_3                           27                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       38     24     36
  DEL PEAK 30(11Q23.2) WILD-TYPE    134    106     96
D66V7, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           38                            134
  CLUS_2                           24                            106
  CLUS_3                           36                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       54     12     32
  DEL PEAK 30(11Q23.2) WILD-TYPE    189     70     77
D66V8, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           54                            189
  CLUS_2                           12                             70
  CLUS_3                           32                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q23.2) MUTATED       25      9     14     16      2     10
  DEL PEAK 30(11Q23.2) WILD-TYPE     48     48     45     44     31     49
D66V9, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           25                             48
  CLUS_2                            9                             48
  CLUS_3                           14                             45
  CLUS_4                           16                             44
  CLUS_5                            2                             31
  CLUS_6                           10                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q23.2) MUTATED       22      7      5     16      3     23
  DEL PEAK 30(11Q23.2) WILD-TYPE     62     50     30     60     25     38
D66V10, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           22                             62
  CLUS_2                            7                             50
  CLUS_3                            5                             30
  CLUS_4                           16                             60
  CLUS_5                            3                             25
  CLUS_6                           23                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 31(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED       46      6      6     12      7
  DEL PEAK 31(12P13.1) WILD-TYPE     77    181     30     64     12
D67V1, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            6                            181
  CLUS_3                            6                             30
  CLUS_4                           12                             64
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       47     16      1      5
  DEL PEAK 31(12P13.1) WILD-TYPE     77    105     41    101
D67V2, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           47                             77
  CLUS_2                           16                            105
  CLUS_3                            1                             41
  CLUS_4                            5                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED        5     15     17     14     13
  DEL PEAK 31(12P13.1) WILD-TYPE     25     77     65     79     46
D67V3, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           15                             77
  CLUS_3                           17                             65
  CLUS_4                           14                             79
  CLUS_5                           13                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       32      6     12     14
  DEL PEAK 31(12P13.1) WILD-TYPE    108     52     66     66
D67V4, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           32                            108
  CLUS_2                            6                             52
  CLUS_3                           12                             66
  CLUS_4                           14                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED        4      5      5      4     23
  DEL PEAK 31(12P13.1) WILD-TYPE     58     57     39     36     41
D67V5, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                            4                             58
  CLUS_2                            5                             57
  CLUS_3                            5                             39
  CLUS_4                            4                             36
  CLUS_5                           23                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       26      5     10
  DEL PEAK 31(12P13.1) WILD-TYPE     84     52     95
D67V6, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           26                             84
  CLUS_2                            5                             52
  CLUS_3                           10                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       26     14     36
  DEL PEAK 31(12P13.1) WILD-TYPE    146    116     96
D67V7, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           26                            146
  CLUS_2                           14                            116
  CLUS_3                           36                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       33     10     33
  DEL PEAK 31(12P13.1) WILD-TYPE    210     72     76
D67V8, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           33                            210
  CLUS_2                           10                             72
  CLUS_3                           33                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(12P13.1) MUTATED       22      9      8     10      8      8
  DEL PEAK 31(12P13.1) WILD-TYPE     51     48     51     50     25     51
D67V9, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                            9                             48
  CLUS_3                            8                             51
  CLUS_4                           10                             50
  CLUS_5                            8                             25
  CLUS_6                            8                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(12P13.1) MUTATED       17      5      3     15      4     21
  DEL PEAK 31(12P13.1) WILD-TYPE     67     52     32     61     24     40
D67V10, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           17                             67
  CLUS_2                            5                             52
  CLUS_3                            3                             32
  CLUS_4                           15                             61
  CLUS_5                            4                             24
  CLUS_6                           21                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 32(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED       34      5      5     12      3
  DEL PEAK 32(12Q12) WILD-TYPE     89    182     31     64     16
D68V1, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         34                           89
  CLUS_2                          5                          182
  CLUS_3                          5                           31
  CLUS_4                         12                           64
  CLUS_5                          3                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED       32     12      0     10
  DEL PEAK 32(12Q12) WILD-TYPE     92    109     42     96
D68V2, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         32                           92
  CLUS_2                         12                          109
  CLUS_3                          0                           42
  CLUS_4                         10                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED        5     14      9     10      9
  DEL PEAK 32(12Q12) WILD-TYPE     25     78     73     83     50
D68V3, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         14                           78
  CLUS_3                          9                           73
  CLUS_4                         10                           83
  CLUS_5                          9                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED       18      9      9     11
  DEL PEAK 32(12Q12) WILD-TYPE    122     49     69     69
D68V4, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         18                          122
  CLUS_2                          9                           49
  CLUS_3                          9                           69
  CLUS_4                         11                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED        4      4      6      7     11
  DEL PEAK 32(12Q12) WILD-TYPE     58     58     38     33     53
D68V5, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          4                           58
  CLUS_2                          4                           58
  CLUS_3                          6                           38
  CLUS_4                          7                           33
  CLUS_5                         11                           53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       16      4     12
  DEL PEAK 32(12Q12) WILD-TYPE     94     53     93
D68V6, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         16                           94
  CLUS_2                          4                           53
  CLUS_3                         12                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       17     16     24
  DEL PEAK 32(12Q12) WILD-TYPE    155    114    108
D68V7, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         17                          155
  CLUS_2                         16                          114
  CLUS_3                         24                          108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       24     10     23
  DEL PEAK 32(12Q12) WILD-TYPE    219     72     86
D68V8, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         24                          219
  CLUS_2                         10                           72
  CLUS_3                         23                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q12) MUTATED       12      8      5      9      5      9
  DEL PEAK 32(12Q12) WILD-TYPE     61     49     54     51     28     50
D68V9, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         12                           61
  CLUS_2                          8                           49
  CLUS_3                          5                           54
  CLUS_4                          9                           51
  CLUS_5                          5                           28
  CLUS_6                          9                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q12) MUTATED       10      4      2     15      3     14
  DEL PEAK 32(12Q12) WILD-TYPE     74     53     33     61     25     47
D68V10, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         10                           74
  CLUS_2                          4                           53
  CLUS_3                          2                           33
  CLUS_4                         15                           61
  CLUS_5                          3                           25
  CLUS_6                         14                           47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 33(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       25      9      3     23      3
  DEL PEAK 33(13Q12.11) WILD-TYPE     98    178     33     53     16
D69V1, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            25                              98
  CLUS_2                             9                             178
  CLUS_3                             3                              33
  CLUS_4                            23                              53
  CLUS_5                             3                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       25     18      2     11
  DEL PEAK 33(13Q12.11) WILD-TYPE     99    103     40     95
D69V2, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            25                              99
  CLUS_2                            18                             103
  CLUS_3                             2                              40
  CLUS_4                            11                              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED        3     12     11     13     13
  DEL PEAK 33(13Q12.11) WILD-TYPE     27     80     71     80     46
D69V3, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            12                              80
  CLUS_3                            11                              71
  CLUS_4                            13                              80
  CLUS_5                            13                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       27      6      8     11
  DEL PEAK 33(13Q12.11) WILD-TYPE    113     52     70     69
D69V4, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            27                             113
  CLUS_2                             6                              52
  CLUS_3                             8                              70
  CLUS_4                            11                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED        6      7      7      4     15
  DEL PEAK 33(13Q12.11) WILD-TYPE     56     55     37     36     49
D69V5, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             6                              56
  CLUS_2                             7                              55
  CLUS_3                             7                              37
  CLUS_4                             4                              36
  CLUS_5                            15                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       23      6     10
  DEL PEAK 33(13Q12.11) WILD-TYPE     87     51     95
D69V6, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            23                              87
  CLUS_2                             6                              51
  CLUS_3                            10                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       22     16     25
  DEL PEAK 33(13Q12.11) WILD-TYPE    150    114    107
D69V7, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            22                             150
  CLUS_2                            16                             114
  CLUS_3                            25                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       37      7     19
  DEL PEAK 33(13Q12.11) WILD-TYPE    206     75     90
D69V8, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            37                             206
  CLUS_2                             7                              75
  CLUS_3                            19                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       13      8      8      8      4      9
  DEL PEAK 33(13Q12.11) WILD-TYPE     60     49     51     52     29     50
D69V9, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            13                              60
  CLUS_2                             8                              49
  CLUS_3                             8                              51
  CLUS_4                             8                              52
  CLUS_5                             4                              29
  CLUS_6                             9                              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       13      5      1     19      3      9
  DEL PEAK 33(13Q12.11) WILD-TYPE     71     52     34     57     25     52
D69V10, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            13                              71
  CLUS_2                             5                              52
  CLUS_3                             1                              34
  CLUS_4                            19                              57
  CLUS_5                             3                              25
  CLUS_6                             9                              52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 34(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       61     19      6     43      7
  DEL PEAK 34(14Q23.3) WILD-TYPE     62    168     30     33     12
D70V1, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                           19                            168
  CLUS_3                            6                             30
  CLUS_4                           43                             33
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       70     29      6     18
  DEL PEAK 34(14Q23.3) WILD-TYPE     54     92     36     88
D70V2, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           70                             54
  CLUS_2                           29                             92
  CLUS_3                            6                             36
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED        7     32     26     26     21
  DEL PEAK 34(14Q23.3) WILD-TYPE     23     60     56     67     38
D70V3, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           32                             60
  CLUS_3                           26                             56
  CLUS_4                           26                             67
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       47     15     29     21
  DEL PEAK 34(14Q23.3) WILD-TYPE     93     43     49     59
D70V4, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           47                             93
  CLUS_2                           15                             43
  CLUS_3                           29                             49
  CLUS_4                           21                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       11     14     12      6     34
  DEL PEAK 34(14Q23.3) WILD-TYPE     51     48     32     34     30
D70V5, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           11                             51
  CLUS_2                           14                             48
  CLUS_3                           12                             32
  CLUS_4                            6                             34
  CLUS_5                           34                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       44     11     22
  DEL PEAK 34(14Q23.3) WILD-TYPE     66     46     83
D70V6, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           44                             66
  CLUS_2                           11                             46
  CLUS_3                           22                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       43     27     62
  DEL PEAK 34(14Q23.3) WILD-TYPE    129    103     70
D70V7, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           43                            129
  CLUS_2                           27                            103
  CLUS_3                           62                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       60     15     57
  DEL PEAK 34(14Q23.3) WILD-TYPE    183     67     52
D70V8, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           60                            183
  CLUS_2                           15                             67
  CLUS_3                           57                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       34     15     13     16     11     14
  DEL PEAK 34(14Q23.3) WILD-TYPE     39     42     46     44     22     45
D70V9, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           34                             39
  CLUS_2                           15                             42
  CLUS_3                           13                             46
  CLUS_4                           16                             44
  CLUS_5                           11                             22
  CLUS_6                           14                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       21     10      6     30      5     31
  DEL PEAK 34(14Q23.3) WILD-TYPE     63     47     29     46     23     30
D70V10, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           21                             63
  CLUS_2                           10                             47
  CLUS_3                            6                             29
  CLUS_4                           30                             46
  CLUS_5                            5                             23
  CLUS_6                           31                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 35(14Q32.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       55     20      4     48      6
  DEL PEAK 35(14Q32.32) WILD-TYPE     68    167     32     28     13
D71V1, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            55                              68
  CLUS_2                            20                             167
  CLUS_3                             4                              32
  CLUS_4                            48                              28
  CLUS_5                             6                              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       62     28      8     21
  DEL PEAK 35(14Q32.32) WILD-TYPE     62     93     34     85
D71V2, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            62                              62
  CLUS_2                            28                              93
  CLUS_3                             8                              34
  CLUS_4                            21                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED        9     30     25     27     23
  DEL PEAK 35(14Q32.32) WILD-TYPE     21     62     57     66     36
D71V3, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            30                              62
  CLUS_3                            25                              57
  CLUS_4                            27                              66
  CLUS_5                            23                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       48     15     27     24
  DEL PEAK 35(14Q32.32) WILD-TYPE     92     43     51     56
D71V4, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            48                              92
  CLUS_2                            15                              43
  CLUS_3                            27                              51
  CLUS_4                            24                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       15     15     11      6     32
  DEL PEAK 35(14Q32.32) WILD-TYPE     47     47     33     34     32
D71V5, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            15                              47
  CLUS_2                            15                              47
  CLUS_3                            11                              33
  CLUS_4                             6                              34
  CLUS_5                            32                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       46     12     21
  DEL PEAK 35(14Q32.32) WILD-TYPE     64     45     84
D71V6, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            46                              64
  CLUS_2                            12                              45
  CLUS_3                            21                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       45     28     57
  DEL PEAK 35(14Q32.32) WILD-TYPE    127    102     75
D71V7, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            45                             127
  CLUS_2                            28                             102
  CLUS_3                            57                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       66     18     46
  DEL PEAK 35(14Q32.32) WILD-TYPE    177     64     63
D71V8, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            66                             177
  CLUS_2                            18                              64
  CLUS_3                            46                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q32.32) MUTATED       31     13     14     14     12     16
  DEL PEAK 35(14Q32.32) WILD-TYPE     42     44     45     46     21     43
D71V9, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            31                              42
  CLUS_2                            13                              44
  CLUS_3                            14                              45
  CLUS_4                            14                              46
  CLUS_5                            12                              21
  CLUS_6                            16                              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q32.32) MUTATED       20     12      5     31      5     27
  DEL PEAK 35(14Q32.32) WILD-TYPE     64     45     30     45     23     34
D71V10, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            20                              64
  CLUS_2                            12                              45
  CLUS_3                             5                              30
  CLUS_4                            31                              45
  CLUS_5                             5                              23
  CLUS_6                            27                              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 36(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       61     16     10     27      6
  DEL PEAK 36(15Q11.2) WILD-TYPE     62    171     26     49     13
D72V1, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                           16                            171
  CLUS_3                           10                             26
  CLUS_4                           27                             49
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       56     30      4     20
  DEL PEAK 36(15Q11.2) WILD-TYPE     68     91     38     86
D72V2, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           56                             68
  CLUS_2                           30                             91
  CLUS_3                            4                             38
  CLUS_4                           20                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       10     20     31     12     21
  DEL PEAK 36(15Q11.2) WILD-TYPE     20     72     51     81     38
D72V3, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           20                             72
  CLUS_3                           31                             51
  CLUS_4                           12                             81
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       52     14     15     13
  DEL PEAK 36(15Q11.2) WILD-TYPE     88     44     63     67
D72V4, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           52                             88
  CLUS_2                           14                             44
  CLUS_3                           15                             63
  CLUS_4                           13                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED        9      3     14      9     31
  DEL PEAK 36(15Q11.2) WILD-TYPE     53     59     30     31     33
D72V5, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                            9                             53
  CLUS_2                            3                             59
  CLUS_3                           14                             30
  CLUS_4                            9                             31
  CLUS_5                           31                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       36      4     26
  DEL PEAK 36(15Q11.2) WILD-TYPE     74     53     79
D72V6, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           36                             74
  CLUS_2                            4                             53
  CLUS_3                           26                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       45     22     51
  DEL PEAK 36(15Q11.2) WILD-TYPE    127    108     81
D72V7, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           45                            127
  CLUS_2                           22                            108
  CLUS_3                           51                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       58     11     49
  DEL PEAK 36(15Q11.2) WILD-TYPE    185     71     60
D72V8, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           58                            185
  CLUS_2                           11                             71
  CLUS_3                           49                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED       26     21     15     16      9      7
  DEL PEAK 36(15Q11.2) WILD-TYPE     47     36     44     44     24     52
D72V9, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           26                             47
  CLUS_2                           21                             36
  CLUS_3                           15                             44
  CLUS_4                           16                             44
  CLUS_5                            9                             24
  CLUS_6                            7                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED       28      5      5     27      3     26
  DEL PEAK 36(15Q11.2) WILD-TYPE     56     52     30     49     25     35
D72V10, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           28                             56
  CLUS_2                            5                             52
  CLUS_3                            5                             30
  CLUS_4                           27                             49
  CLUS_5                            3                             25
  CLUS_6                           26                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 37(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       63     15      9     29      6
  DEL PEAK 37(15Q15.1) WILD-TYPE     60    172     27     47     13
D73V1, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           63                             60
  CLUS_2                           15                            172
  CLUS_3                            9                             27
  CLUS_4                           29                             47
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       59     27      5     18
  DEL PEAK 37(15Q15.1) WILD-TYPE     65     94     37     88
D73V2, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           59                             65
  CLUS_2                           27                             94
  CLUS_3                            5                             37
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED        9     26     27     11     21
  DEL PEAK 37(15Q15.1) WILD-TYPE     21     66     55     82     38
D73V3, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           26                             66
  CLUS_3                           27                             55
  CLUS_4                           11                             82
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       48     16     17     13
  DEL PEAK 37(15Q15.1) WILD-TYPE     92     42     61     67
D73V4, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           48                             92
  CLUS_2                           16                             42
  CLUS_3                           17                             61
  CLUS_4                           13                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       11      3     15      8     31
  DEL PEAK 37(15Q15.1) WILD-TYPE     51     59     29     32     33
D73V5, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           11                             51
  CLUS_2                            3                             59
  CLUS_3                           15                             29
  CLUS_4                            8                             32
  CLUS_5                           31                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       41      3     24
  DEL PEAK 37(15Q15.1) WILD-TYPE     69     54     81
D73V6, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           41                             69
  CLUS_2                            3                             54
  CLUS_3                           24                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       45     21     54
  DEL PEAK 37(15Q15.1) WILD-TYPE    127    109     78
D73V7, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           45                            127
  CLUS_2                           21                            109
  CLUS_3                           54                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       60     10     50
  DEL PEAK 37(15Q15.1) WILD-TYPE    183     72     59
D73V8, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           60                            183
  CLUS_2                           10                             72
  CLUS_3                           50                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q15.1) MUTATED       29     17     15     16      9      6
  DEL PEAK 37(15Q15.1) WILD-TYPE     44     40     44     44     24     53
D73V9, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                           17                             40
  CLUS_3                           15                             44
  CLUS_4                           16                             44
  CLUS_5                            9                             24
  CLUS_6                            6                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q15.1) MUTATED       27      5      4     25      4     27
  DEL PEAK 37(15Q15.1) WILD-TYPE     57     52     31     51     24     34
D73V10, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           27                             57
  CLUS_2                            5                             52
  CLUS_3                            4                             31
  CLUS_4                           25                             51
  CLUS_5                            4                             24
  CLUS_6                           27                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 38(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED       54     10      3     24      2
  DEL PEAK 38(16P13.3) WILD-TYPE     69    177     33     52     17
D74V1, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           54                             69
  CLUS_2                           10                            177
  CLUS_3                            3                             33
  CLUS_4                           24                             52
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       48     20      1     15
  DEL PEAK 38(16P13.3) WILD-TYPE     76    101     41     91
D74V2, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           20                            101
  CLUS_3                            1                             41
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED        4     22     17     20     12
  DEL PEAK 38(16P13.3) WILD-TYPE     26     70     65     73     47
D74V3, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           22                             70
  CLUS_3                           17                             65
  CLUS_4                           20                             73
  CLUS_5                           12                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       32     10     19     14
  DEL PEAK 38(16P13.3) WILD-TYPE    108     48     59     66
D74V4, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           32                            108
  CLUS_2                           10                             48
  CLUS_3                           19                             59
  CLUS_4                           14                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED        8      6      3      3     30
  DEL PEAK 38(16P13.3) WILD-TYPE     54     56     41     37     34
D74V5, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            8                             54
  CLUS_2                            6                             56
  CLUS_3                            3                             41
  CLUS_4                            3                             37
  CLUS_5                           30                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       33      4     13
  DEL PEAK 38(16P13.3) WILD-TYPE     77     53     92
D74V6, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           33                             77
  CLUS_2                            4                             53
  CLUS_3                           13                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       23     15     54
  DEL PEAK 38(16P13.3) WILD-TYPE    149    115     78
D74V7, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           23                            149
  CLUS_2                           15                            115
  CLUS_3                           54                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       36      9     47
  DEL PEAK 38(16P13.3) WILD-TYPE    207     73     62
D74V8, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           36                            207
  CLUS_2                            9                             73
  CLUS_3                           47                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED       33     11      4      9     11      5
  DEL PEAK 38(16P13.3) WILD-TYPE     40     46     55     51     22     54
D74V9, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           33                             40
  CLUS_2                           11                             46
  CLUS_3                            4                             55
  CLUS_4                            9                             51
  CLUS_5                           11                             22
  CLUS_6                            5                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED       20      5      2     15      1     30
  DEL PEAK 38(16P13.3) WILD-TYPE     64     52     33     61     27     31
D74V10, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           20                             64
  CLUS_2                            5                             52
  CLUS_3                            2                             33
  CLUS_4                           15                             61
  CLUS_5                            1                             27
  CLUS_6                           30                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 39(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       74     43     13     44      8
  DEL PEAK 39(16Q23.1) WILD-TYPE     49    144     23     32     11
D75V1, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           74                             49
  CLUS_2                           43                            144
  CLUS_3                           13                             23
  CLUS_4                           44                             32
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       66     53     13     29
  DEL PEAK 39(16Q23.1) WILD-TYPE     58     68     29     77
D75V2, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           66                             58
  CLUS_2                           53                             68
  CLUS_3                           13                             29
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       12     40     37     38     22
  DEL PEAK 39(16Q23.1) WILD-TYPE     18     52     45     55     37
D75V3, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           40                             52
  CLUS_3                           37                             45
  CLUS_4                           38                             55
  CLUS_5                           22                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       65     24     35     25
  DEL PEAK 39(16Q23.1) WILD-TYPE     75     34     43     55
D75V4, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                           24                             34
  CLUS_3                           35                             43
  CLUS_4                           25                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       25     17     14     12     37
  DEL PEAK 39(16Q23.1) WILD-TYPE     37     45     30     28     27
D75V5, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           25                             37
  CLUS_2                           17                             45
  CLUS_3                           14                             30
  CLUS_4                           12                             28
  CLUS_5                           37                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       55     14     36
  DEL PEAK 39(16Q23.1) WILD-TYPE     55     43     69
D75V6, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           55                             55
  CLUS_2                           14                             43
  CLUS_3                           36                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       68     37     74
  DEL PEAK 39(16Q23.1) WILD-TYPE    104     93     58
D75V7, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           68                            104
  CLUS_2                           37                             93
  CLUS_3                           74                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       99     23     57
  DEL PEAK 39(16Q23.1) WILD-TYPE    144     59     52
D75V8, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           99                            144
  CLUS_2                           23                             59
  CLUS_3                           57                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       37     27     21     20     17     15
  DEL PEAK 39(16Q23.1) WILD-TYPE     36     30     38     40     16     44
D75V9, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           37                             36
  CLUS_2                           27                             30
  CLUS_3                           21                             38
  CLUS_4                           20                             40
  CLUS_5                           17                             16
  CLUS_6                           15                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       37     13      9     36      7     35
  DEL PEAK 39(16Q23.1) WILD-TYPE     47     44     26     40     21     26
D75V10, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           37                             47
  CLUS_2                           13                             44
  CLUS_3                            9                             26
  CLUS_4                           36                             40
  CLUS_5                            7                             21
  CLUS_6                           35                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 40(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P13.3) MUTATED       80     18     17     52      9
  DEL PEAK 40(17P13.3) WILD-TYPE     43    169     19     24     10
D76V1, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           80                             43
  CLUS_2                           18                            169
  CLUS_3                           17                             19
  CLUS_4                           52                             24
  CLUS_5                            9                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.3) MUTATED       83     44      4     29
  DEL PEAK 40(17P13.3) WILD-TYPE     41     77     38     77
D76V2, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           83                             41
  CLUS_2                           44                             77
  CLUS_3                            4                             38
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P13.3) MUTATED       16     38     27     34     25
  DEL PEAK 40(17P13.3) WILD-TYPE     14     54     55     59     34
D76V3, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                           38                             54
  CLUS_3                           27                             55
  CLUS_4                           34                             59
  CLUS_5                           25                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.3) MUTATED       69     13     33     25
  DEL PEAK 40(17P13.3) WILD-TYPE     71     45     45     55
D76V4, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           69                             71
  CLUS_2                           13                             45
  CLUS_3                           33                             45
  CLUS_4                           25                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P13.3) MUTATED       14     14     17     14     37
  DEL PEAK 40(17P13.3) WILD-TYPE     48     48     27     26     27
D76V5, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           14                             48
  CLUS_2                           14                             48
  CLUS_3                           17                             27
  CLUS_4                           14                             26
  CLUS_5                           37                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.3) MUTATED       49     15     32
  DEL PEAK 40(17P13.3) WILD-TYPE     61     42     73
D76V6, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           49                             61
  CLUS_2                           15                             42
  CLUS_3                           32                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.3) MUTATED       60     35     76
  DEL PEAK 40(17P13.3) WILD-TYPE    112     95     56
D76V7, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           60                            112
  CLUS_2                           35                             95
  CLUS_3                           76                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.3) MUTATED       89     19     63
  DEL PEAK 40(17P13.3) WILD-TYPE    154     63     46
D76V8, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           89                            154
  CLUS_2                           19                             63
  CLUS_3                           63                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P13.3) MUTATED       39     25     20     24     12     17
  DEL PEAK 40(17P13.3) WILD-TYPE     34     32     39     36     21     42
D76V9, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           39                             34
  CLUS_2                           25                             32
  CLUS_3                           20                             39
  CLUS_4                           24                             36
  CLUS_5                           12                             21
  CLUS_6                           17                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P13.3) MUTATED       34     12      7     38      8     38
  DEL PEAK 40(17P13.3) WILD-TYPE     50     45     28     38     20     23
D76V10, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           34                             50
  CLUS_2                           12                             45
  CLUS_3                            7                             28
  CLUS_4                           38                             38
  CLUS_5                            8                             20
  CLUS_6                           38                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 41(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17P12) MUTATED       88     17     17     52      7
  DEL PEAK 41(17P12) WILD-TYPE     35    170     19     24     12
D77V1, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         88                           35
  CLUS_2                         17                          170
  CLUS_3                         17                           19
  CLUS_4                         52                           24
  CLUS_5                          7                           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17P12) MUTATED       90     45      4     26
  DEL PEAK 41(17P12) WILD-TYPE     34     76     38     80
D77V2, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         90                           34
  CLUS_2                         45                           76
  CLUS_3                          4                           38
  CLUS_4                         26                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17P12) MUTATED       17     45     29     27     25
  DEL PEAK 41(17P12) WILD-TYPE     13     47     53     66     34
D77V3, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         17                           13
  CLUS_2                         45                           47
  CLUS_3                         29                           53
  CLUS_4                         27                           66
  CLUS_5                         25                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17P12) MUTATED       69     16     36     22
  DEL PEAK 41(17P12) WILD-TYPE     71     42     42     58
D77V4, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         69                           71
  CLUS_2                         16                           42
  CLUS_3                         36                           42
  CLUS_4                         22                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17P12) MUTATED       15     11     17     13     42
  DEL PEAK 41(17P12) WILD-TYPE     47     51     27     27     22
D77V5, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         15                           47
  CLUS_2                         11                           51
  CLUS_3                         17                           27
  CLUS_4                         13                           27
  CLUS_5                         42                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17P12) MUTATED       52     10     36
  DEL PEAK 41(17P12) WILD-TYPE     58     47     69
D77V6, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         52                           58
  CLUS_2                         10                           47
  CLUS_3                         36                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17P12) MUTATED       64     29     83
  DEL PEAK 41(17P12) WILD-TYPE    108    101     49
D77V7, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         64                          108
  CLUS_2                         29                          101
  CLUS_3                         83                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17P12) MUTATED       90     16     70
  DEL PEAK 41(17P12) WILD-TYPE    153     66     39
D77V8, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         90                          153
  CLUS_2                         16                           66
  CLUS_3                         70                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17P12) MUTATED       43     23     22     25     12     15
  DEL PEAK 41(17P12) WILD-TYPE     30     34     37     35     21     44
D77V9, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         43                           30
  CLUS_2                         23                           34
  CLUS_3                         22                           37
  CLUS_4                         25                           35
  CLUS_5                         12                           21
  CLUS_6                         15                           44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17P12) MUTATED       39      9      7     39      6     40
  DEL PEAK 41(17P12) WILD-TYPE     45     48     28     37     22     21
D77V10, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         39                           45
  CLUS_2                          9                           48
  CLUS_3                          7                           28
  CLUS_4                         39                           37
  CLUS_5                          6                           22
  CLUS_6                         40                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 42(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q24.3) MUTATED       35     10      6     19      6
  DEL PEAK 42(17Q24.3) WILD-TYPE     88    177     30     57     13
D78V1, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           35                             88
  CLUS_2                           10                            177
  CLUS_3                            6                             30
  CLUS_4                           19                             57
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q24.3) MUTATED       32     20      0     12
  DEL PEAK 42(17Q24.3) WILD-TYPE     92    101     42     94
D78V2, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           32                             92
  CLUS_2                           20                            101
  CLUS_3                            0                             42
  CLUS_4                           12                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q24.3) MUTATED        6     18     13     15      8
  DEL PEAK 42(17Q24.3) WILD-TYPE     24     74     69     78     51
D78V3, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           18                             74
  CLUS_3                           13                             69
  CLUS_4                           15                             78
  CLUS_5                            8                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q24.3) MUTATED       29      8     13     10
  DEL PEAK 42(17Q24.3) WILD-TYPE    111     50     65     70
D78V4, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           29                            111
  CLUS_2                            8                             50
  CLUS_3                           13                             65
  CLUS_4                           10                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q24.3) MUTATED        7      6      4     10     17
  DEL PEAK 42(17Q24.3) WILD-TYPE     55     56     40     30     47
D78V5, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                            7                             55
  CLUS_2                            6                             56
  CLUS_3                            4                             40
  CLUS_4                           10                             30
  CLUS_5                           17                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q24.3) MUTATED       21      7     16
  DEL PEAK 42(17Q24.3) WILD-TYPE     89     50     89
D78V6, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           21                             89
  CLUS_2                            7                             50
  CLUS_3                           16                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q24.3) MUTATED       25     15     34
  DEL PEAK 42(17Q24.3) WILD-TYPE    147    115     98
D78V7, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           25                            147
  CLUS_2                           15                            115
  CLUS_3                           34                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q24.3) MUTATED       34     11     29
  DEL PEAK 42(17Q24.3) WILD-TYPE    209     71     80
D78V8, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           34                            209
  CLUS_2                           11                             71
  CLUS_3                           29                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q24.3) MUTATED       14     13      5      6      8      8
  DEL PEAK 42(17Q24.3) WILD-TYPE     59     44     54     54     25     51
D78V9, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           14                             59
  CLUS_2                           13                             44
  CLUS_3                            5                             54
  CLUS_4                            6                             54
  CLUS_5                            8                             25
  CLUS_6                            8                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q24.3) MUTATED       16      8      3      9      5     13
  DEL PEAK 42(17Q24.3) WILD-TYPE     68     49     32     67     23     48
D78V10, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           16                             68
  CLUS_2                            8                             49
  CLUS_3                            3                             32
  CLUS_4                            9                             67
  CLUS_5                            5                             23
  CLUS_6                           13                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 43(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q12.2) MUTATED       82     29     20     46      4
  DEL PEAK 43(18Q12.2) WILD-TYPE     41    158     16     30     15
D79V1, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           82                             41
  CLUS_2                           29                            158
  CLUS_3                           20                             16
  CLUS_4                           46                             30
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q12.2) MUTATED       71     39     20     29
  DEL PEAK 43(18Q12.2) WILD-TYPE     53     82     22     77
D79V2, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           71                             53
  CLUS_2                           39                             82
  CLUS_3                           20                             22
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q12.2) MUTATED       14     44     30     33     27
  DEL PEAK 43(18Q12.2) WILD-TYPE     16     48     52     60     32
D79V3, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           44                             48
  CLUS_3                           30                             52
  CLUS_4                           33                             60
  CLUS_5                           27                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q12.2) MUTATED       65     19     37     27
  DEL PEAK 43(18Q12.2) WILD-TYPE     75     39     41     53
D79V4, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                           19                             39
  CLUS_3                           37                             41
  CLUS_4                           27                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q12.2) MUTATED       21     19     20     10     34
  DEL PEAK 43(18Q12.2) WILD-TYPE     41     43     24     30     30
D79V5, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           21                             41
  CLUS_2                           19                             43
  CLUS_3                           20                             24
  CLUS_4                           10                             30
  CLUS_5                           34                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q12.2) MUTATED       56     16     32
  DEL PEAK 43(18Q12.2) WILD-TYPE     54     41     73
D79V6, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           56                             54
  CLUS_2                           16                             41
  CLUS_3                           32                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q12.2) MUTATED       62     42     74
  DEL PEAK 43(18Q12.2) WILD-TYPE    110     88     58
D79V7, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           62                            110
  CLUS_2                           42                             88
  CLUS_3                           74                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q12.2) MUTATED       91     25     62
  DEL PEAK 43(18Q12.2) WILD-TYPE    152     57     47
D79V8, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           91                            152
  CLUS_2                           25                             57
  CLUS_3                           62                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q12.2) MUTATED       41     17     19     27     15     16
  DEL PEAK 43(18Q12.2) WILD-TYPE     32     40     40     33     18     43
D79V9, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           41                             32
  CLUS_2                           17                             40
  CLUS_3                           19                             40
  CLUS_4                           27                             33
  CLUS_5                           15                             18
  CLUS_6                           16                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q12.2) MUTATED       34     12      9     31     11     38
  DEL PEAK 43(18Q12.2) WILD-TYPE     50     45     26     45     17     23
D79V10, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           34                             50
  CLUS_2                           12                             45
  CLUS_3                            9                             26
  CLUS_4                           31                             45
  CLUS_5                           11                             17
  CLUS_6                           38                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 44(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q21.2) MUTATED       89     35     25     51      4
  DEL PEAK 44(18Q21.2) WILD-TYPE     34    152     11     25     15
D80V1, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           89                             34
  CLUS_2                           35                            152
  CLUS_3                           25                             11
  CLUS_4                           51                             25
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q21.2) MUTATED       79     49     21     33
  DEL PEAK 44(18Q21.2) WILD-TYPE     45     72     21     73
D80V2, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           79                             45
  CLUS_2                           49                             72
  CLUS_3                           21                             21
  CLUS_4                           33                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q21.2) MUTATED       17     47     34     41     29
  DEL PEAK 44(18Q21.2) WILD-TYPE     13     45     48     52     30
D80V3, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           17                             13
  CLUS_2                           47                             45
  CLUS_3                           34                             48
  CLUS_4                           41                             52
  CLUS_5                           29                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q21.2) MUTATED       75     21     40     32
  DEL PEAK 44(18Q21.2) WILD-TYPE     65     37     38     48
D80V4, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           75                             65
  CLUS_2                           21                             37
  CLUS_3                           40                             38
  CLUS_4                           32                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q21.2) MUTATED       26     20     20     12     42
  DEL PEAK 44(18Q21.2) WILD-TYPE     36     42     24     28     22
D80V5, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           26                             36
  CLUS_2                           20                             42
  CLUS_3                           20                             24
  CLUS_4                           12                             28
  CLUS_5                           42                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q21.2) MUTATED       64     17     39
  DEL PEAK 44(18Q21.2) WILD-TYPE     46     40     66
D80V6, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           64                             46
  CLUS_2                           17                             40
  CLUS_3                           39                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q21.2) MUTATED       74     47     80
  DEL PEAK 44(18Q21.2) WILD-TYPE     98     83     52
D80V7, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           74                             98
  CLUS_2                           47                             83
  CLUS_3                           80                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q21.2) MUTATED      106     28     67
  DEL PEAK 44(18Q21.2) WILD-TYPE    137     54     42
D80V8, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                          106                            137
  CLUS_2                           28                             54
  CLUS_3                           67                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(18Q21.2) MUTATED       45     19     23     31     15     20
  DEL PEAK 44(18Q21.2) WILD-TYPE     28     38     36     29     18     39
D80V9, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           45                             28
  CLUS_2                           19                             38
  CLUS_3                           23                             36
  CLUS_4                           31                             29
  CLUS_5                           15                             18
  CLUS_6                           20                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(18Q21.2) MUTATED       43     14     11     35     13     37
  DEL PEAK 44(18Q21.2) WILD-TYPE     41     43     24     41     15     24
D80V10, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           43                             41
  CLUS_2                           14                             43
  CLUS_3                           11                             24
  CLUS_4                           35                             41
  CLUS_5                           13                             15
  CLUS_6                           37                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 45(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED       92      9     12     42      7
  DEL PEAK 45(19P13.3) WILD-TYPE     31    178     24     34     12
D81V1, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           92                             31
  CLUS_2                            9                            178
  CLUS_3                           12                             24
  CLUS_4                           42                             34
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED       92     30      5     19
  DEL PEAK 45(19P13.3) WILD-TYPE     32     91     37     87
D81V2, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           92                             32
  CLUS_2                           30                             91
  CLUS_3                            5                             37
  CLUS_4                           19                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED       14     35     39     25     21
  DEL PEAK 45(19P13.3) WILD-TYPE     16     57     43     68     38
D81V3, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           35                             57
  CLUS_3                           39                             43
  CLUS_4                           25                             68
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED       73     14     26     21
  DEL PEAK 45(19P13.3) WILD-TYPE     67     44     52     59
D81V4, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           73                             67
  CLUS_2                           14                             44
  CLUS_3                           26                             52
  CLUS_4                           21                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED       13      4     11      9     48
  DEL PEAK 45(19P13.3) WILD-TYPE     49     58     33     31     16
D81V5, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           13                             49
  CLUS_2                            4                             58
  CLUS_3                           11                             33
  CLUS_4                            9                             31
  CLUS_5                           48                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       54      5     26
  DEL PEAK 45(19P13.3) WILD-TYPE     56     52     79
D81V6, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           54                             56
  CLUS_2                            5                             52
  CLUS_3                           26                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       46     23     90
  DEL PEAK 45(19P13.3) WILD-TYPE    126    107     42
D81V7, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           23                            107
  CLUS_3                           90                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       66      8     85
  DEL PEAK 45(19P13.3) WILD-TYPE    177     74     24
D81V8, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           66                            177
  CLUS_2                            8                             74
  CLUS_3                           85                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P13.3) MUTATED       47     16     18     23     16      7
  DEL PEAK 45(19P13.3) WILD-TYPE     26     41     41     37     17     52
D81V9, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           47                             26
  CLUS_2                           16                             41
  CLUS_3                           18                             41
  CLUS_4                           23                             37
  CLUS_5                           16                             17
  CLUS_6                            7                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P13.3) MUTATED       37      6      3     29      2     50
  DEL PEAK 45(19P13.3) WILD-TYPE     47     51     32     47     26     11
D81V10, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           37                             47
  CLUS_2                            6                             51
  CLUS_3                            3                             32
  CLUS_4                           29                             47
  CLUS_5                            2                             26
  CLUS_6                           50                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 46(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.11) MUTATED       41      5      6     16      7
  DEL PEAK 46(19Q13.11) WILD-TYPE     82    182     30     60     12
D82V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            41                              82
  CLUS_2                             5                             182
  CLUS_3                             6                              30
  CLUS_4                            16                              60
  CLUS_5                             7                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.11) MUTATED       47     16      1      4
  DEL PEAK 46(19Q13.11) WILD-TYPE     77    105     41    102
D82V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            47                              77
  CLUS_2                            16                             105
  CLUS_3                             1                              41
  CLUS_4                             4                             102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.11) MUTATED        3     20     17     12      8
  DEL PEAK 46(19Q13.11) WILD-TYPE     27     72     65     81     51
D82V3, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            20                              72
  CLUS_3                            17                              65
  CLUS_4                            12                              81
  CLUS_5                             8                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.11) MUTATED       28      8     12     12
  DEL PEAK 46(19Q13.11) WILD-TYPE    112     50     66     68
D82V4, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            28                             112
  CLUS_2                             8                              50
  CLUS_3                            12                              66
  CLUS_4                            12                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.11) MUTATED        6      2      6      4     20
  DEL PEAK 46(19Q13.11) WILD-TYPE     56     60     38     36     44
D82V5, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                             6                              56
  CLUS_2                             2                              60
  CLUS_3                             6                              38
  CLUS_4                             4                              36
  CLUS_5                            20                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.11) MUTATED       22      2     14
  DEL PEAK 46(19Q13.11) WILD-TYPE     88     55     91
D82V6, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            22                              88
  CLUS_2                             2                              55
  CLUS_3                            14                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.11) MUTATED       23      8     43
  DEL PEAK 46(19Q13.11) WILD-TYPE    149    122     89
D82V7, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            23                             149
  CLUS_2                             8                             122
  CLUS_3                            43                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.11) MUTATED       28      4     42
  DEL PEAK 46(19Q13.11) WILD-TYPE    215     78     67
D82V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            28                             215
  CLUS_2                             4                              78
  CLUS_3                            42                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.11) MUTATED       24     11      9      6      6      4
  DEL PEAK 46(19Q13.11) WILD-TYPE     49     46     50     54     27     55
D82V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            24                              49
  CLUS_2                            11                              46
  CLUS_3                             9                              50
  CLUS_4                             6                              54
  CLUS_5                             6                              27
  CLUS_6                             4                              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.11) MUTATED       22      2      2     11      0     23
  DEL PEAK 46(19Q13.11) WILD-TYPE     62     55     33     65     28     38
D82V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            22                              62
  CLUS_2                             2                              55
  CLUS_3                             2                              33
  CLUS_4                            11                              65
  CLUS_5                             0                              28
  CLUS_6                            23                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 47(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED       20      8      1     10      0
  DEL PEAK 47(20P12.1) WILD-TYPE    103    179     35     66     19
D83V1, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           20                            103
  CLUS_2                            8                            179
  CLUS_3                            1                             35
  CLUS_4                           10                             66
  CLUS_5                            0                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED       24      7      1      5
  DEL PEAK 47(20P12.1) WILD-TYPE    100    114     41    101
D83V2, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           24                            100
  CLUS_2                            7                            114
  CLUS_3                            1                             41
  CLUS_4                            5                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        3      8      7      5      9
  DEL PEAK 47(20P12.1) WILD-TYPE     27     84     75     88     50
D83V3, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            8                             84
  CLUS_3                            7                             75
  CLUS_4                            5                             88
  CLUS_5                            9                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED       15      2      8      7
  DEL PEAK 47(20P12.1) WILD-TYPE    125     56     70     73
D83V4, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           15                            125
  CLUS_2                            2                             56
  CLUS_3                            8                             70
  CLUS_4                            7                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        3      2      8      1      8
  DEL PEAK 47(20P12.1) WILD-TYPE     59     60     36     39     56
D83V5, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                             59
  CLUS_2                            2                             60
  CLUS_3                            8                             36
  CLUS_4                            1                             39
  CLUS_5                            8                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       10      2     10
  DEL PEAK 47(20P12.1) WILD-TYPE    100     55     95
D83V6, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           10                            100
  CLUS_2                            2                             55
  CLUS_3                           10                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       10      6     23
  DEL PEAK 47(20P12.1) WILD-TYPE    162    124    109
D83V7, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           10                            162
  CLUS_2                            6                            124
  CLUS_3                           23                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       20      3     16
  DEL PEAK 47(20P12.1) WILD-TYPE    223     79     93
D83V8, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           20                            223
  CLUS_2                            3                             79
  CLUS_3                           16                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED        8      5      5      7      5      3
  DEL PEAK 47(20P12.1) WILD-TYPE     65     52     54     53     28     56
D83V9, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            8                             65
  CLUS_2                            5                             52
  CLUS_3                            5                             54
  CLUS_4                            7                             53
  CLUS_5                            5                             28
  CLUS_6                            3                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED       11      1      2     10      2      7
  DEL PEAK 47(20P12.1) WILD-TYPE     73     56     33     66     26     54
D83V10, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           11                             73
  CLUS_2                            1                             56
  CLUS_3                            2                             33
  CLUS_4                           10                             66
  CLUS_5                            2                             26
  CLUS_6                            7                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 48(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q11.2) MUTATED       75     35     16     46     11
  DEL PEAK 48(21Q11.2) WILD-TYPE     48    152     20     30      8
D84V1, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           75                             48
  CLUS_2                           35                            152
  CLUS_3                           16                             20
  CLUS_4                           46                             30
  CLUS_5                           11                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q11.2) MUTATED       74     48      7     39
  DEL PEAK 48(21Q11.2) WILD-TYPE     50     73     35     67
D84V2, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           74                             50
  CLUS_2                           48                             73
  CLUS_3                            7                             35
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q11.2) MUTATED       13     39     35     38     18
  DEL PEAK 48(21Q11.2) WILD-TYPE     17     53     47     55     41
D84V3, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                           39                             53
  CLUS_3                           35                             47
  CLUS_4                           38                             55
  CLUS_5                           18                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q11.2) MUTATED       65     17     31     30
  DEL PEAK 48(21Q11.2) WILD-TYPE     75     41     47     50
D84V4, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                           17                             41
  CLUS_3                           31                             47
  CLUS_4                           30                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q11.2) MUTATED       18     17     11     11     37
  DEL PEAK 48(21Q11.2) WILD-TYPE     44     45     33     29     27
D84V5, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           18                             44
  CLUS_2                           17                             45
  CLUS_3                           11                             33
  CLUS_4                           11                             29
  CLUS_5                           37                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q11.2) MUTATED       47     18     29
  DEL PEAK 48(21Q11.2) WILD-TYPE     63     39     76
D84V6, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           47                             63
  CLUS_2                           18                             39
  CLUS_3                           29                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q11.2) MUTATED       60     40     80
  DEL PEAK 48(21Q11.2) WILD-TYPE    112     90     52
D84V7, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           60                            112
  CLUS_2                           40                             90
  CLUS_3                           80                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q11.2) MUTATED       92     26     62
  DEL PEAK 48(21Q11.2) WILD-TYPE    151     56     47
D84V8, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           92                            151
  CLUS_2                           26                             56
  CLUS_3                           62                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(21Q11.2) MUTATED       38     25     18     27     21     17
  DEL PEAK 48(21Q11.2) WILD-TYPE     35     32     41     33     12     42
D84V9, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           38                             35
  CLUS_2                           25                             32
  CLUS_3                           18                             41
  CLUS_4                           27                             33
  CLUS_5                           21                             12
  CLUS_6                           17                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(21Q11.2) MUTATED       35     16      8     41      9     37
  DEL PEAK 48(21Q11.2) WILD-TYPE     49     41     27     35     19     24
D84V10, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           35                             49
  CLUS_2                           16                             41
  CLUS_3                            8                             27
  CLUS_4                           41                             35
  CLUS_5                            9                             19
  CLUS_6                           37                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 49(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(21Q22.3) MUTATED       73     39     17     53     11
  DEL PEAK 49(21Q22.3) WILD-TYPE     50    148     19     23      8
D85V1, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           73                             50
  CLUS_2                           39                            148
  CLUS_3                           17                             19
  CLUS_4                           53                             23
  CLUS_5                           11                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(21Q22.3) MUTATED       71     55      6     42
  DEL PEAK 49(21Q22.3) WILD-TYPE     53     66     36     64
D85V2, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           71                             53
  CLUS_2                           55                             66
  CLUS_3                            6                             36
  CLUS_4                           42                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(21Q22.3) MUTATED       16     44     36     39     18
  DEL PEAK 49(21Q22.3) WILD-TYPE     14     48     46     54     41
D85V3, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                           44                             48
  CLUS_3                           36                             46
  CLUS_4                           39                             54
  CLUS_5                           18                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(21Q22.3) MUTATED       68     18     36     31
  DEL PEAK 49(21Q22.3) WILD-TYPE     72     40     42     49
D85V4, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           68                             72
  CLUS_2                           18                             40
  CLUS_3                           36                             42
  CLUS_4                           31                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(21Q22.3) MUTATED       19     18     16     12     34
  DEL PEAK 49(21Q22.3) WILD-TYPE     43     44     28     28     30
D85V5, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           19                             43
  CLUS_2                           18                             44
  CLUS_3                           16                             28
  CLUS_4                           12                             28
  CLUS_5                           34                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(21Q22.3) MUTATED       49     18     32
  DEL PEAK 49(21Q22.3) WILD-TYPE     61     39     73
D85V6, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           49                             61
  CLUS_2                           18                             39
  CLUS_3                           32                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(21Q22.3) MUTATED       71     42     77
  DEL PEAK 49(21Q22.3) WILD-TYPE    101     88     55
D85V7, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           71                            101
  CLUS_2                           42                             88
  CLUS_3                           77                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(21Q22.3) MUTATED      103     24     63
  DEL PEAK 49(21Q22.3) WILD-TYPE    140     58     46
D85V8, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                          103                            140
  CLUS_2                           24                             58
  CLUS_3                           63                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(21Q22.3) MUTATED       38     31     22     24     23     16
  DEL PEAK 49(21Q22.3) WILD-TYPE     35     26     37     36     10     43
D85V9, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           38                             35
  CLUS_2                           31                             26
  CLUS_3                           22                             37
  CLUS_4                           24                             36
  CLUS_5                           23                             10
  CLUS_6                           16                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(21Q22.3) MUTATED       42     16      9     45      8     34
  DEL PEAK 49(21Q22.3) WILD-TYPE     42     41     26     31     20     27
D85V10, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           42                             42
  CLUS_2                           16                             41
  CLUS_3                            9                             26
  CLUS_4                           45                             31
  CLUS_5                            8                             20
  CLUS_6                           34                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 50(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.31) MUTATED       73     21     11     47      9
  DEL PEAK 50(22Q13.31) WILD-TYPE     50    166     25     29     10
D86V1, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            73                              50
  CLUS_2                            21                             166
  CLUS_3                            11                              25
  CLUS_4                            47                              29
  CLUS_5                             9                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.31) MUTATED       75     40      4     25
  DEL PEAK 50(22Q13.31) WILD-TYPE     49     81     38     81
D86V2, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            75                              49
  CLUS_2                            40                              81
  CLUS_3                             4                              38
  CLUS_4                            25                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.31) MUTATED       12     33     30     29     22
  DEL PEAK 50(22Q13.31) WILD-TYPE     18     59     52     64     37
D86V3, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            12                              18
  CLUS_2                            33                              59
  CLUS_3                            30                              52
  CLUS_4                            29                              64
  CLUS_5                            22                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.31) MUTATED       62     13     29     22
  DEL PEAK 50(22Q13.31) WILD-TYPE     78     45     49     58
D86V4, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            62                              78
  CLUS_2                            13                              45
  CLUS_3                            29                              49
  CLUS_4                            22                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.31) MUTATED       14     14     17     11     35
  DEL PEAK 50(22Q13.31) WILD-TYPE     48     48     27     29     29
D86V5, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            14                              48
  CLUS_2                            14                              48
  CLUS_3                            17                              27
  CLUS_4                            11                              29
  CLUS_5                            35                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.31) MUTATED       44     14     33
  DEL PEAK 50(22Q13.31) WILD-TYPE     66     43     72
D86V6, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            44                              66
  CLUS_2                            14                              43
  CLUS_3                            33                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.31) MUTATED       51     31     76
  DEL PEAK 50(22Q13.31) WILD-TYPE    121     99     56
D86V7, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            51                             121
  CLUS_2                            31                              99
  CLUS_3                            76                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.31) MUTATED       77     17     64
  DEL PEAK 50(22Q13.31) WILD-TYPE    166     65     45
D86V8, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            77                             166
  CLUS_2                            17                              65
  CLUS_3                            64                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(22Q13.31) MUTATED       39     23     21     14     18     13
  DEL PEAK 50(22Q13.31) WILD-TYPE     34     34     38     46     15     46
D86V9, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            39                              34
  CLUS_2                            23                              34
  CLUS_3                            21                              38
  CLUS_4                            14                              46
  CLUS_5                            18                              15
  CLUS_6                            13                              46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(22Q13.31) MUTATED       34     13      6     34      6     35
  DEL PEAK 50(22Q13.31) WILD-TYPE     50     44     29     42     22     26
D86V10, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            34                              50
  CLUS_2                            13                              44
  CLUS_3                             6                              29
  CLUS_4                            34                              42
  CLUS_5                             6                              22
  CLUS_6                            35                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 51(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP22.2) MUTATED       42     11      4     24      4
  DEL PEAK 51(XP22.2) WILD-TYPE     81    176     32     52     15
D87V1, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          42                            81
  CLUS_2                          11                           176
  CLUS_3                           4                            32
  CLUS_4                          24                            52
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP22.2) MUTATED       39     24      2     14
  DEL PEAK 51(XP22.2) WILD-TYPE     85     97     40     92
D87V2, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          39                            85
  CLUS_2                          24                            97
  CLUS_3                           2                            40
  CLUS_4                          14                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP22.2) MUTATED        5     16     17     17     14
  DEL PEAK 51(XP22.2) WILD-TYPE     25     76     65     76     45
D87V3, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          16                            76
  CLUS_3                          17                            65
  CLUS_4                          17                            76
  CLUS_5                          14                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP22.2) MUTATED       34      9     14     12
  DEL PEAK 51(XP22.2) WILD-TYPE    106     49     64     68
D87V4, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          34                           106
  CLUS_2                           9                            49
  CLUS_3                          14                            64
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP22.2) MUTATED        3      7      9     11     21
  DEL PEAK 51(XP22.2) WILD-TYPE     59     55     35     29     43
D87V5, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           3                            59
  CLUS_2                           7                            55
  CLUS_3                           9                            35
  CLUS_4                          11                            29
  CLUS_5                          21                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP22.2) MUTATED       24      7     20
  DEL PEAK 51(XP22.2) WILD-TYPE     86     50     85
D87V6, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          24                            86
  CLUS_2                           7                            50
  CLUS_3                          20                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP22.2) MUTATED       32     19     33
  DEL PEAK 51(XP22.2) WILD-TYPE    140    111     99
D87V7, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          32                           140
  CLUS_2                          19                           111
  CLUS_3                          33                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP22.2) MUTATED       40     10     34
  DEL PEAK 51(XP22.2) WILD-TYPE    203     72     75
D87V8, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          40                           203
  CLUS_2                          10                            72
  CLUS_3                          34                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP22.2) MUTATED       22     11     14     11      5     11
  DEL PEAK 51(XP22.2) WILD-TYPE     51     46     45     49     28     48
D87V9, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          22                            51
  CLUS_2                          11                            46
  CLUS_3                          14                            45
  CLUS_4                          11                            49
  CLUS_5                           5                            28
  CLUS_6                          11                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP22.2) MUTATED       22      9      6     14      4     19
  DEL PEAK 51(XP22.2) WILD-TYPE     62     48     29     62     24     42
D87V10, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          22                            62
  CLUS_2                           9                            48
  CLUS_3                           6                            29
  CLUS_4                          14                            62
  CLUS_5                           4                            24
  CLUS_6                          19                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 52(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XP21.1) MUTATED       35      8      7     21      3
  DEL PEAK 52(XP21.1) WILD-TYPE     88    179     29     55     16
D88V1, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          35                            88
  CLUS_2                           8                           179
  CLUS_3                           7                            29
  CLUS_4                          21                            55
  CLUS_5                           3                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP21.1) MUTATED       29     23      1     13
  DEL PEAK 52(XP21.1) WILD-TYPE     95     98     41     93
D88V2, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          29                            95
  CLUS_2                          23                            98
  CLUS_3                           1                            41
  CLUS_4                          13                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XP21.1) MUTATED        5     14     13     17     10
  DEL PEAK 52(XP21.1) WILD-TYPE     25     78     69     76     49
D88V3, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          14                            78
  CLUS_3                          13                            69
  CLUS_4                          17                            76
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP21.1) MUTATED       26      8     13     12
  DEL PEAK 52(XP21.1) WILD-TYPE    114     50     65     68
D88V4, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          26                           114
  CLUS_2                           8                            50
  CLUS_3                          13                            65
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XP21.1) MUTATED        2      9      8      7     14
  DEL PEAK 52(XP21.1) WILD-TYPE     60     53     36     33     50
D88V5, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                           2                            60
  CLUS_2                           9                            53
  CLUS_3                           8                            36
  CLUS_4                           7                            33
  CLUS_5                          14                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP21.1) MUTATED       17     10     13
  DEL PEAK 52(XP21.1) WILD-TYPE     93     47     92
D88V6, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          17                            93
  CLUS_2                          10                            47
  CLUS_3                          13                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP21.1) MUTATED       28     16     27
  DEL PEAK 52(XP21.1) WILD-TYPE    144    114    105
D88V7, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          28                           144
  CLUS_2                          16                           114
  CLUS_3                          27                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP21.1) MUTATED       37     10     24
  DEL PEAK 52(XP21.1) WILD-TYPE    206     72     85
D88V8, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          37                           206
  CLUS_2                          10                            72
  CLUS_3                          24                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XP21.1) MUTATED       17     12      9      8      5     10
  DEL PEAK 52(XP21.1) WILD-TYPE     56     45     50     52     28     49
D88V9, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                          12                            45
  CLUS_3                           9                            50
  CLUS_4                           8                            52
  CLUS_5                           5                            28
  CLUS_6                          10                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XP21.1) MUTATED       17      8      5     14      4     13
  DEL PEAK 52(XP21.1) WILD-TYPE     67     49     30     62     24     48
D88V10, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          17                            67
  CLUS_2                           8                            49
  CLUS_3                           5                            30
  CLUS_4                          14                            62
  CLUS_5                           4                            24
  CLUS_6                          13                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 53(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(XQ21.33) MUTATED       27      6      5     17      1
  DEL PEAK 53(XQ21.33) WILD-TYPE     96    181     31     59     18
D89V1, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                            6                            181
  CLUS_3                            5                             31
  CLUS_4                           17                             59
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ21.33) MUTATED       25     15      2      6
  DEL PEAK 53(XQ21.33) WILD-TYPE     99    106     40    100
D89V2, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           25                             99
  CLUS_2                           15                            106
  CLUS_3                            2                             40
  CLUS_4                            6                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(XQ21.33) MUTATED        5     16     13     10      8
  DEL PEAK 53(XQ21.33) WILD-TYPE     25     76     69     83     51
D89V3, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           16                             76
  CLUS_3                           13                             69
  CLUS_4                           10                             83
  CLUS_5                            8                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ21.33) MUTATED       26      6     14      6
  DEL PEAK 53(XQ21.33) WILD-TYPE    114     52     64     74
D89V4, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                            6                             52
  CLUS_3                           14                             64
  CLUS_4                            6                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(XQ21.33) MUTATED        3      5      6      5     15
  DEL PEAK 53(XQ21.33) WILD-TYPE     59     57     38     35     49
D89V5, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                            3                             59
  CLUS_2                            5                             57
  CLUS_3                            6                             38
  CLUS_4                            5                             35
  CLUS_5                           15                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ21.33) MUTATED       18      5     11
  DEL PEAK 53(XQ21.33) WILD-TYPE     92     52     94
D89V6, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           18                             92
  CLUS_2                            5                             52
  CLUS_3                           11                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ21.33) MUTATED       21     10     24
  DEL PEAK 53(XQ21.33) WILD-TYPE    151    120    108
D89V7, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           21                            151
  CLUS_2                           10                            120
  CLUS_3                           24                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ21.33) MUTATED       32      4     19
  DEL PEAK 53(XQ21.33) WILD-TYPE    211     78     90
D89V8, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           32                            211
  CLUS_2                            4                             78
  CLUS_3                           19                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 53(XQ21.33) MUTATED       17      5      4      8      4      4
  DEL PEAK 53(XQ21.33) WILD-TYPE     56     52     55     52     29     55
D89V9, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                            5                             52
  CLUS_3                            4                             55
  CLUS_4                            8                             52
  CLUS_5                            4                             29
  CLUS_6                            4                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 53(XQ21.33) MUTATED       15      3      1      9      2     12
  DEL PEAK 53(XQ21.33) WILD-TYPE     69     54     34     67     26     49
D89V10, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           15                             69
  CLUS_2                            3                             54
  CLUS_3                            1                             34
  CLUS_4                            9                             67
  CLUS_5                            2                             26
  CLUS_6                           12                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
