[1] "started"
[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/THCA-TP/19782204/analysis.results.RData"
[1] "CLI_CNVARM"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
                      V1.D                         V2 
           "Time to Death"           "YEARS_TO_BIRTH" 
                        V3                         V4 
        "PATHOLOGIC_STAGE"        "PATHOLOGY_T_STAGE" 
                        V5                         V6 
       "PATHOLOGY_N_STAGE"        "PATHOLOGY_M_STAGE" 
                        V7                         V8 
                  "GENDER"        "RADIATION_THERAPY" 
                        V9                        V10 
       "HISTOLOGICAL_TYPE"       "RADIATION_EXPOSURE" 
                       V11                        V12 
"EXTRATHYROIDAL_EXTENSION"           "RESIDUAL_TUMOR" 
                       V13                        V14 
   "NUMBER_OF_LYMPH_NODES"            "MULTIFOCALITY" 
                       V15                        V16 
              "TUMOR_SIZE"                     "RACE" 
                       V17 
               "ETHNICITY" 
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[1] FALSE
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[1] FALSE
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/THCA-TP/19782204/D58V3.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/THCA-TP/19782204/D58V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/THCA-TP/19782204/D58V5.png"
[1] FALSE
[1] "symlink"
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[1] FALSE
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[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/THCA-TP/19782204/D58V9.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/THCA-TP/19782204/D58V10.png"
[1] FALSE
[1] "symlink"
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[1] FALSE
[1] "symlink"
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[1] FALSE
[1] "symlink"
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[1] "symlink"
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[1] "symlink"
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[1] FALSE
[1] "symlink"
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[1] TRUE
[1] "symlink"
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[1] FALSE
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[1] FALSE
