This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 96 focal events and 10 molecular subtypes across 499 patients, 419 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p36.32 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_1q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_1q43 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_2p16.1 cnv correlated to 'CN_CNMF'.
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amp_3p22.3 cnv correlated to 'CN_CNMF'.
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amp_3p14.1 cnv correlated to 'CN_CNMF'.
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amp_4p16.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4q28.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_4q31.21 cnv correlated to 'CN_CNMF'.
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amp_4q32.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5p14.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5q21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5q21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5q33.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6p22.3 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_6p22.2 cnv correlated to 'METHLYATION_CNMF'.
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amp_6p21.31 cnv correlated to 'CN_CNMF'.
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amp_6p12.2 cnv correlated to 'CN_CNMF'.
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amp_6q27 cnv correlated to 'RPPA_CHIERARCHICAL'.
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amp_7q11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q21.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q31.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q34 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_9q22.31 cnv correlated to 'CN_CNMF'.
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amp_9q31.1 cnv correlated to 'CN_CNMF'.
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amp_9q34.3 cnv correlated to 'CN_CNMF'.
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amp_10q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_10q25.1 cnv correlated to 'CN_CNMF'.
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amp_11p13 cnv correlated to 'CN_CNMF'.
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amp_12p11.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q21.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q14.2 cnv correlated to 'CN_CNMF'.
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amp_13q34 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_14q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_14q32.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_18q12.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_18q22.1 cnv correlated to 'CN_CNMF'.
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amp_18q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_20p13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20q13.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_21q21.3 cnv correlated to 'CN_CNMF'.
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amp_22q11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xp22.12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xp11.4 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_xp11.22 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_xp11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xq21.2 cnv correlated to 'CN_CNMF'.
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amp_xq22.3 cnv correlated to 'CN_CNMF'.
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amp_xq23 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_xq24 cnv correlated to 'CN_CNMF'.
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amp_xq24 cnv correlated to 'CN_CNMF'.
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amp_xq28 cnv correlated to 'CN_CNMF'.
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del_1q24.2 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_1q42.13 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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del_2p23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF'.
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del_6q22.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8q24.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9q22.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10p12.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q21.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p15.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q12.13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q23.3 cnv correlated to 'CN_CNMF'.
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del_17p13.1 cnv correlated to 'CN_CNMF'.
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del_18q12.3 cnv correlated to 'CN_CNMF'.
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del_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19p13.12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_21q21.1 cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q12.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xq23 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_xq22.3 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 96 focal events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 419 significant findings detected.
|
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| amp 1q43 | 29 (6%) | 470 |
1e-05 (0.000132) |
0.00596 (0.0212) |
0.016 (0.0474) |
0.0389 (0.0946) |
0.0003 (0.00196) |
1e-05 (0.000132) |
0.0191 (0.0532) |
0.00975 (0.0321) |
0.00161 (0.00709) |
0.00225 (0.00943) |
| del 13q22 1 | 19 (4%) | 480 |
0.00232 (0.00968) |
0.0381 (0.0931) |
0.0369 (0.0908) |
0.174 (0.295) |
0.00121 (0.00561) |
0.00084 (0.00414) |
0.00378 (0.0147) |
0.00095 (0.00461) |
0.0135 (0.0408) |
0.00365 (0.0143) |
| amp 1q31 2 | 29 (6%) | 470 |
1e-05 (0.000132) |
0.0241 (0.0643) |
0.0161 (0.0475) |
0.0233 (0.0629) |
0.00035 (0.00223) |
1e-05 (0.000132) |
0.117 (0.215) |
0.0835 (0.172) |
0.0137 (0.0412) |
0.0293 (0.0763) |
| amp 5q35 2 | 20 (4%) | 479 |
1e-05 (0.000132) |
0.00013 (0.00103) |
0.2 (0.327) |
0.0387 (0.0944) |
0.00071 (0.00357) |
4e-05 (0.000413) |
0.00096 (0.00461) |
8e-05 (0.000731) |
0.866 (0.968) |
0.0098 (0.0321) |
| amp 7q11 21 | 20 (4%) | 479 |
1e-05 (0.000132) |
0.0001 (0.000865) |
0.143 (0.252) |
0.0189 (0.0532) |
0.00058 (0.00309) |
0.00029 (0.00191) |
0.00311 (0.0124) |
0.00047 (0.00264) |
0.427 (0.582) |
0.0239 (0.064) |
| amp 7q31 1 | 22 (4%) | 477 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.128 (0.23) |
0.0113 (0.0352) |
0.0001 (0.000865) |
4e-05 (0.000413) |
5e-05 (0.00049) |
1e-05 (0.000132) |
0.736 (0.874) |
0.0004 (0.00234) |
| amp 7q34 | 22 (4%) | 477 |
1e-05 (0.000132) |
4e-05 (0.000413) |
0.142 (0.251) |
0.0042 (0.016) |
0.0004 (0.00234) |
0.0002 (0.00142) |
2e-05 (0.000243) |
1e-05 (0.000132) |
0.54 (0.701) |
0.0107 (0.0338) |
| amp 12q21 31 | 17 (3%) | 482 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.628 (0.787) |
0.0432 (0.104) |
1e-05 (0.000132) |
1e-05 (0.000132) |
3e-05 (0.000343) |
1e-05 (0.000132) |
0.149 (0.26) |
0.00163 (0.00715) |
| amp 20p13 | 14 (3%) | 485 |
1e-05 (0.000132) |
7e-05 (0.000659) |
0.224 (0.355) |
0.017 (0.0495) |
0.00042 (0.00243) |
9e-05 (0.000793) |
0.00048 (0.00266) |
6e-05 (0.000576) |
0.411 (0.565) |
0.0221 (0.06) |
| amp 20q13 11 | 14 (3%) | 485 |
1e-05 (0.000132) |
5e-05 (0.00049) |
0.284 (0.42) |
0.0486 (0.113) |
0.00036 (0.00224) |
9e-05 (0.000793) |
0.00044 (0.0025) |
9e-05 (0.000793) |
0.803 (0.913) |
0.0226 (0.061) |
| amp 20q13 2 | 14 (3%) | 485 |
1e-05 (0.000132) |
0.00053 (0.00289) |
0.322 (0.464) |
0.0304 (0.0788) |
0.00385 (0.0149) |
0.00134 (0.00615) |
0.00053 (0.00289) |
0.0011 (0.00518) |
0.673 (0.822) |
0.0423 (0.102) |
| amp 22q11 21 | 7 (1%) | 492 |
0.00247 (0.0101) |
0.004 (0.0153) |
0.00833 (0.0283) |
0.0397 (0.0962) |
0.033 (0.0839) |
0.0306 (0.0789) |
0.0267 (0.0703) |
0.0107 (0.0338) |
||
| del 8q24 22 | 7 (1%) | 492 |
0.0005 (0.00276) |
0.00037 (0.00226) |
0.773 (0.901) |
0.173 (0.293) |
0.00155 (0.00689) |
0.00096 (0.00461) |
0.00019 (0.00138) |
8e-05 (0.000731) |
0.00396 (0.0153) |
0.00046 (0.0026) |
| del 10q23 31 | 12 (2%) | 487 |
0.00014 (0.0011) |
0.00445 (0.0165) |
0.0157 (0.0469) |
0.161 (0.277) |
0.00086 (0.00421) |
0.00449 (0.0165) |
0.0043 (0.0162) |
0.00061 (0.00317) |
0.265 (0.404) |
0.00789 (0.0271) |
| del 22q12 3 | 90 (18%) | 409 |
1e-05 (0.000132) |
2e-05 (0.000243) |
0.412 (0.565) |
0.508 (0.674) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00061 (0.00317) |
3e-05 (0.000343) |
0.00021 (0.00146) |
0.00042 (0.00243) |
| del 22q13 1 | 89 (18%) | 410 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.41 (0.565) |
0.508 (0.674) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00037 (0.00226) |
0.00011 (0.00091) |
0.00022 (0.00151) |
0.00023 (0.00157) |
| del 22q13 2 | 89 (18%) | 410 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.411 (0.565) |
0.51 (0.674) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00039 (0.00231) |
5e-05 (0.00049) |
0.00012 (0.000968) |
0.00029 (0.00191) |
| del 22q13 32 | 90 (18%) | 409 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.407 (0.563) |
0.511 (0.674) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00019 (0.00138) |
3e-05 (0.000343) |
0.00029 (0.00191) |
0.00018 (0.00134) |
| amp 4p16 1 | 7 (1%) | 492 |
0.00038 (0.00229) |
0.0109 (0.0343) |
0.368 (0.52) |
0.445 (0.601) |
0.0321 (0.0823) |
0.0105 (0.0336) |
0.0333 (0.0847) |
0.00635 (0.0223) |
0.712 (0.851) |
0.0475 (0.111) |
| amp 5p14 3 | 23 (5%) | 476 |
1e-05 (0.000132) |
0.00872 (0.0293) |
0.0783 (0.163) |
0.232 (0.363) |
0.0102 (0.0328) |
5e-05 (0.00049) |
0.00149 (0.00672) |
0.00013 (0.00103) |
0.301 (0.442) |
0.00177 (0.00759) |
| amp 5q33 1 | 21 (4%) | 478 |
1e-05 (0.000132) |
0.00011 (0.00091) |
0.244 (0.378) |
0.0732 (0.155) |
0.00026 (0.00176) |
9e-05 (0.000793) |
0.00036 (0.00224) |
1e-05 (0.000132) |
0.691 (0.834) |
0.00273 (0.0111) |
| amp 7q21 11 | 21 (4%) | 478 |
1e-05 (0.000132) |
0.00035 (0.00223) |
0.226 (0.356) |
0.0599 (0.134) |
0.00234 (0.00972) |
0.00064 (0.00329) |
0.00155 (0.00689) |
6e-05 (0.000576) |
0.449 (0.604) |
0.00281 (0.0113) |
| amp 12p11 1 | 16 (3%) | 483 |
1e-05 (0.000132) |
4e-05 (0.000413) |
0.241 (0.375) |
0.31 (0.451) |
4e-05 (0.000413) |
4e-05 (0.000413) |
7e-05 (0.000659) |
1e-05 (0.000132) |
0.647 (0.794) |
0.00242 (0.00993) |
| amp 12q23 1 | 17 (3%) | 482 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.744 (0.877) |
0.294 (0.433) |
0.00012 (0.000968) |
2e-05 (0.000243) |
0.00022 (0.00151) |
1e-05 (0.000132) |
0.252 (0.387) |
0.00819 (0.0279) |
| amp 14q12 | 13 (3%) | 486 |
1e-05 (0.000132) |
0.00193 (0.00816) |
0.484 (0.647) |
0.17 (0.29) |
0.00399 (0.0153) |
0.00315 (0.0125) |
0.0168 (0.0492) |
0.00335 (0.0133) |
0.411 (0.565) |
0.0213 (0.0583) |
| amp 14q32 31 | 13 (3%) | 486 |
1e-05 (0.000132) |
0.00011 (0.00091) |
0.485 (0.647) |
0.17 (0.291) |
0.00061 (0.00317) |
0.00031 (0.00201) |
0.00037 (0.00226) |
5e-05 (0.00049) |
1 (1.00) |
0.0008 (0.00398) |
| amp xp22 12 | 10 (2%) | 489 |
1e-05 (0.000132) |
0.00029 (0.00191) |
0.727 (0.865) |
0.322 (0.464) |
0.00755 (0.0262) |
0.00763 (0.0263) |
0.0355 (0.0885) |
0.0052 (0.0189) |
0.643 (0.79) |
0.0336 (0.0852) |
| amp xp11 21 | 9 (2%) | 490 |
1e-05 (0.000132) |
0.00729 (0.0254) |
0.541 (0.701) |
0.705 (0.845) |
0.0329 (0.0839) |
0.00982 (0.0321) |
0.0185 (0.0529) |
0.00366 (0.0143) |
0.823 (0.933) |
0.0189 (0.0532) |
| del 2p23 1 | 12 (2%) | 487 |
1e-05 (0.000132) |
2e-05 (0.000243) |
0.637 (0.789) |
0.0939 (0.186) |
2e-05 (0.000243) |
4e-05 (0.000413) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.254 (0.389) |
0.0002 (0.00142) |
| del 2q22 1 | 10 (2%) | 489 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.578 (0.732) |
0.0932 (0.185) |
8e-05 (0.000731) |
3e-05 (0.000343) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.264 (0.404) |
0.00057 (0.00307) |
| del 2q37 3 | 13 (3%) | 486 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.697 (0.839) |
0.101 (0.195) |
4e-05 (0.000413) |
1e-05 (0.000132) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0826 (0.171) |
0.00032 (0.00206) |
| del 6q22 31 | 7 (1%) | 492 |
2e-05 (0.000243) |
0.00218 (0.00918) |
0.102 (0.197) |
0.581 (0.734) |
0.0319 (0.0822) |
0.0184 (0.0528) |
0.00495 (0.0181) |
0.00074 (0.0037) |
1 (1.00) |
0.0104 (0.0334) |
| del 8p23 2 | 4 (1%) | 495 |
0.00015 (0.00115) |
0.0184 (0.0528) |
0.0354 (0.0885) |
0.0468 (0.111) |
0.00811 (0.0277) |
0.00428 (0.0162) |
0.113 (0.21) |
0.0196 (0.0544) |
||
| del 8p22 | 4 (1%) | 495 |
0.00021 (0.00146) |
0.0186 (0.0531) |
0.0359 (0.089) |
0.0472 (0.111) |
0.00782 (0.0269) |
0.00431 (0.0162) |
0.112 (0.209) |
0.0191 (0.0532) |
||
| del 8p12 | 4 (1%) | 495 |
0.00016 (0.00121) |
0.018 (0.0522) |
0.0355 (0.0885) |
0.0472 (0.111) |
0.00856 (0.0289) |
0.00447 (0.0165) |
0.11 (0.207) |
0.0189 (0.0532) |
||
| del 9p21 3 | 20 (4%) | 479 |
1e-05 (0.000132) |
0.00861 (0.029) |
0.941 (1.00) |
0.649 (0.795) |
0.0254 (0.0673) |
0.0249 (0.0662) |
0.00044 (0.0025) |
0.00044 (0.0025) |
0.23 (0.36) |
0.00017 (0.00127) |
| del 10p12 31 | 7 (1%) | 492 |
1e-05 (0.000132) |
0.0109 (0.0344) |
0.784 (0.904) |
0.272 (0.408) |
0.021 (0.058) |
0.016 (0.0474) |
0.00484 (0.0177) |
0.00083 (0.00411) |
0.802 (0.913) |
0.00999 (0.0325) |
| del 11p15 1 | 7 (1%) | 492 |
1e-05 (0.000132) |
0.0113 (0.0352) |
0.784 (0.904) |
0.959 (1.00) |
0.00748 (0.026) |
0.0191 (0.0532) |
0.0054 (0.0194) |
0.00068 (0.00345) |
0.8 (0.913) |
0.0104 (0.0334) |
| del 15q25 3 | 9 (2%) | 490 |
0.00068 (0.00345) |
0.0015 (0.00673) |
0.192 (0.317) |
0.064 (0.142) |
0.00428 (0.0162) |
0.00176 (0.00758) |
0.00048 (0.00266) |
0.00016 (0.00121) |
0.449 (0.604) |
0.0115 (0.0355) |
| del 19p13 2 | 7 (1%) | 492 |
0.00021 (0.00146) |
0.00036 (0.00224) |
0.486 (0.648) |
0.323 (0.464) |
0.00142 (0.00649) |
0.00099 (0.00473) |
0.0002 (0.00142) |
0.00011 (0.00091) |
0.0536 (0.121) |
0.00011 (0.00091) |
| del 19p13 12 | 8 (2%) | 491 |
0.0128 (0.0389) |
0.00442 (0.0164) |
0.0842 (0.173) |
0.107 (0.202) |
0.0113 (0.0352) |
0.0054 (0.0194) |
0.00112 (0.00524) |
0.00039 (0.00231) |
0.0942 (0.186) |
0.00058 (0.00309) |
| amp 4q32 3 | 7 (1%) | 492 |
0.00057 (0.00307) |
0.0116 (0.0357) |
0.12 (0.218) |
0.0645 (0.143) |
0.0324 (0.0831) |
0.0191 (0.0532) |
0.0339 (0.0857) |
0.00599 (0.0212) |
0.899 (0.997) |
0.187 (0.312) |
| amp 5q21 1 | 23 (5%) | 476 |
1e-05 (0.000132) |
0.00124 (0.00572) |
0.27 (0.408) |
0.0884 (0.18) |
0.00608 (0.0215) |
0.0125 (0.0382) |
0.00965 (0.032) |
0.00587 (0.0209) |
0.876 (0.976) |
0.106 (0.201) |
| amp 5q21 1 | 20 (4%) | 479 |
1e-05 (0.000132) |
0.00096 (0.00461) |
0.248 (0.382) |
0.0942 (0.186) |
0.00338 (0.0134) |
0.00061 (0.00317) |
0.00105 (0.00497) |
0.00064 (0.00329) |
0.675 (0.822) |
0.0655 (0.143) |
| amp 19p13 3 | 8 (2%) | 491 |
1e-05 (0.000132) |
0.00434 (0.0162) |
0.0115 (0.0355) |
0.00561 (0.0201) |
0.00188 (0.00802) |
0.00038 (0.00229) |
0.45 (0.604) |
0.319 (0.462) |
||
| amp 20q13 2 | 13 (3%) | 486 |
1e-05 (0.000132) |
0.00161 (0.00709) |
0.446 (0.601) |
0.103 (0.198) |
0.00976 (0.0321) |
0.00236 (0.00972) |
0.0105 (0.0336) |
0.00169 (0.00734) |
0.785 (0.904) |
0.105 (0.201) |
| del 13q12 13 | 18 (4%) | 481 |
0.00039 (0.00231) |
0.00119 (0.00555) |
0.103 (0.198) |
0.0861 (0.176) |
0.0182 (0.0526) |
0.0367 (0.0905) |
0.0784 (0.163) |
0.0211 (0.058) |
0.428 (0.583) |
0.0346 (0.0871) |
| amp 18q22 3 | 8 (2%) | 491 |
0.00104 (0.00494) |
0.0246 (0.0657) |
0.035 (0.0879) |
0.123 (0.223) |
0.0263 (0.0695) |
0.00662 (0.0232) |
0.16 (0.276) |
0.399 (0.556) |
||
| del 9q22 33 | 27 (5%) | 472 |
1e-05 (0.000132) |
0.0938 (0.186) |
0.571 (0.726) |
0.116 (0.213) |
0.158 (0.274) |
0.0282 (0.0737) |
0.00528 (0.0191) |
0.00365 (0.0143) |
0.194 (0.319) |
0.00235 (0.00972) |
| amp 4q28 2 | 6 (1%) | 493 |
0.00019 (0.00138) |
0.037 (0.0908) |
0.0774 (0.161) |
0.0289 (0.0754) |
0.0838 (0.172) |
0.0182 (0.0526) |
0.779 (0.902) |
0.113 (0.21) |
||
| amp 10q24 2 | 3 (1%) | 496 |
0.0493 (0.114) |
0.0495 (0.114) |
0.0997 (0.193) |
0.172 (0.293) |
0.0267 (0.0703) |
0.0168 (0.0492) |
||||
| amp 13q34 | 7 (1%) | 492 |
0.00059 (0.00313) |
0.0493 (0.114) |
0.91 (1.00) |
0.0357 (0.0887) |
0.0525 (0.12) |
0.173 (0.293) |
0.308 (0.45) |
0.136 (0.242) |
1 (1.00) |
1 (1.00) |
| amp 18q12 1 | 7 (1%) | 492 |
1e-05 (0.000132) |
0.0379 (0.0928) |
0.0581 (0.131) |
0.118 (0.216) |
0.1 (0.194) |
0.0304 (0.0788) |
0.267 (0.406) |
0.184 (0.309) |
||
| del 1q24 2 | 3 (1%) | 496 |
0.00148 (0.0067) |
0.0502 (0.115) |
0.0984 (0.191) |
0.173 (0.293) |
0.0279 (0.0733) |
0.0168 (0.0492) |
1 (1.00) |
0.191 (0.317) |
||
| del 1q42 13 | 5 (1%) | 494 |
0.0156 (0.0467) |
0.168 (0.288) |
0.12 (0.218) |
0.935 (1.00) |
0.0479 (0.112) |
0.157 (0.273) |
0.0412 (0.0997) |
0.309 (0.45) |
0.843 (0.951) |
0.195 (0.32) |
| del 10q21 2 | 12 (2%) | 487 |
0.0017 (0.00735) |
0.0703 (0.151) |
0.273 (0.409) |
0.69 (0.834) |
0.0191 (0.0532) |
0.0655 (0.143) |
0.146 (0.256) |
0.175 (0.296) |
0.577 (0.732) |
0.0474 (0.111) |
| del 21q21 1 | 9 (2%) | 490 |
0.00012 (0.000968) |
0.308 (0.45) |
0.309 (0.45) |
0.348 (0.496) |
0.795 (0.911) |
0.803 (0.913) |
0.0661 (0.144) |
0.0237 (0.0637) |
0.236 (0.369) |
0.0206 (0.0571) |
| amp 1p36 32 | 5 (1%) | 494 |
0.00169 (0.00734) |
0.837 (0.946) |
0.439 (0.595) |
0.0361 (0.0894) |
0.63 (0.787) |
0.543 (0.702) |
0.272 (0.409) |
0.835 (0.945) |
||
| amp 6p22 3 | 3 (1%) | 496 |
0.0475 (0.111) |
0.0493 (0.114) |
0.131 (0.234) |
0.51 (0.674) |
0.305 (0.446) |
0.188 (0.312) |
0.777 (0.902) |
0.192 (0.317) |
||
| amp xp11 4 | 9 (2%) | 490 |
1e-05 (0.000132) |
0.0107 (0.0338) |
0.773 (0.901) |
0.518 (0.68) |
0.0974 (0.19) |
0.144 (0.253) |
0.088 (0.179) |
0.133 (0.236) |
0.801 (0.913) |
0.187 (0.312) |
| amp xp11 22 | 8 (2%) | 491 |
1e-05 (0.000132) |
0.0117 (0.036) |
1 (1.00) |
0.297 (0.436) |
0.115 (0.213) |
0.061 (0.136) |
0.18 (0.303) |
0.072 (0.154) |
1 (1.00) |
0.185 (0.31) |
| amp xq23 | 9 (2%) | 490 |
1e-05 (0.000132) |
0.0535 (0.121) |
1 (1.00) |
0.849 (0.954) |
0.0915 (0.184) |
0.05 (0.115) |
0.208 (0.332) |
0.133 (0.237) |
1 (1.00) |
0.397 (0.554) |
| del xq23 | 4 (1%) | 495 |
0.00967 (0.032) |
0.0461 (0.11) |
0.066 (0.144) |
0.197 (0.324) |
0.0966 (0.189) |
0.245 (0.379) |
0.0737 (0.156) |
0.0924 (0.184) |
0.22 (0.349) |
0.0966 (0.189) |
| del xq22 3 | 4 (1%) | 495 |
0.00957 (0.0319) |
0.045 (0.108) |
0.0645 (0.143) |
0.202 (0.328) |
0.0985 (0.191) |
0.246 (0.379) |
0.0744 (0.156) |
0.0908 (0.183) |
0.22 (0.349) |
0.0958 (0.188) |
| amp 2p16 1 | 3 (1%) | 496 |
0.0484 (0.113) |
1 (1.00) |
1 (1.00) |
0.876 (0.976) |
1 (1.00) |
1 (1.00) |
0.31 (0.451) |
1 (1.00) |
||
| amp 3p22 3 | 4 (1%) | 495 |
0.00929 (0.0311) |
0.182 (0.306) |
1 (1.00) |
0.886 (0.984) |
0.242 (0.376) |
0.318 (0.46) |
0.113 (0.21) |
0.0652 (0.143) |
1 (1.00) |
0.067 (0.145) |
| amp 3p14 1 | 5 (1%) | 494 |
0.016 (0.0474) |
0.425 (0.58) |
0.269 (0.407) |
0.426 (0.581) |
0.695 (0.837) |
0.441 (0.597) |
0.865 (0.968) |
0.642 (0.79) |
1 (1.00) |
0.642 (0.79) |
| amp 4q31 21 | 10 (2%) | 489 |
0.00307 (0.0123) |
0.113 (0.21) |
0.786 (0.905) |
0.623 (0.784) |
0.279 (0.414) |
0.202 (0.328) |
0.517 (0.679) |
0.658 (0.806) |
1 (1.00) |
0.401 (0.558) |
| amp 6p22 2 | 4 (1%) | 495 |
0.106 (0.202) |
0.0456 (0.109) |
0.773 (0.901) |
0.32 (0.462) |
0.0953 (0.188) |
0.247 (0.38) |
0.115 (0.213) |
0.0647 (0.143) |
1 (1.00) |
0.0675 (0.146) |
| amp 6p21 31 | 3 (1%) | 496 |
0.0473 (0.111) |
0.549 (0.704) |
0.743 (0.877) |
0.4 (0.556) |
0.203 (0.329) |
0.267 (0.406) |
0.11 (0.207) |
0.275 (0.409) |
||
| amp 6p12 2 | 3 (1%) | 496 |
0.0493 (0.114) |
0.547 (0.704) |
0.745 (0.877) |
0.72 (0.858) |
0.202 (0.328) |
0.266 (0.405) |
0.109 (0.205) |
0.274 (0.409) |
||
| amp 6q27 | 4 (1%) | 495 |
0.106 (0.202) |
0.183 (0.307) |
0.156 (0.272) |
0.0128 (0.0389) |
0.457 (0.613) |
0.414 (0.567) |
0.113 (0.21) |
0.0653 (0.143) |
0.694 (0.837) |
0.0668 (0.145) |
| amp 9q22 31 | 6 (1%) | 493 |
0.0217 (0.0592) |
0.865 (0.968) |
0.271 (0.408) |
0.853 (0.958) |
0.945 (1.00) |
0.353 (0.502) |
0.78 (0.902) |
0.884 (0.984) |
0.0632 (0.141) |
0.381 (0.536) |
| amp 9q31 1 | 6 (1%) | 493 |
0.0213 (0.0583) |
0.416 (0.569) |
0.482 (0.645) |
0.823 (0.933) |
0.63 (0.787) |
0.444 (0.6) |
1 (1.00) |
1 (1.00) |
0.336 (0.481) |
0.772 (0.901) |
| amp 9q34 3 | 7 (1%) | 492 |
0.0437 (0.105) |
0.293 (0.432) |
1 (1.00) |
0.849 (0.954) |
0.627 (0.787) |
0.34 (0.487) |
0.8 (0.913) |
0.628 (0.787) |
0.104 (0.199) |
0.774 (0.901) |
| amp 10q25 1 | 4 (1%) | 495 |
0.0101 (0.0328) |
0.789 (0.907) |
0.899 (0.997) |
0.874 (0.976) |
0.69 (0.834) |
0.569 (0.725) |
1 (1.00) |
1 (1.00) |
||
| amp 11p13 | 8 (2%) | 491 |
0.00266 (0.0108) |
0.118 (0.216) |
0.774 (0.901) |
0.119 (0.218) |
0.0924 (0.184) |
0.142 (0.251) |
0.161 (0.277) |
0.0824 (0.17) |
0.528 (0.689) |
0.515 (0.679) |
| amp 13q14 2 | 6 (1%) | 493 |
0.00015 (0.00115) |
0.0894 (0.181) |
0.628 (0.787) |
0.221 (0.349) |
0.125 (0.225) |
0.264 (0.404) |
0.528 (0.689) |
0.348 (0.496) |
0.745 (0.877) |
0.641 (0.79) |
| amp 18q22 1 | 7 (1%) | 492 |
0.00015 (0.00115) |
0.24 (0.374) |
0.37 (0.521) |
0.0892 (0.181) |
0.157 (0.273) |
0.276 (0.41) |
0.27 (0.408) |
0.205 (0.329) |
0.799 (0.913) |
0.709 (0.849) |
| amp 21q21 3 | 6 (1%) | 493 |
0.00146 (0.00664) |
0.0715 (0.153) |
0.631 (0.787) |
0.838 (0.947) |
0.526 (0.687) |
0.347 (0.495) |
0.744 (0.877) |
0.64 (0.79) |
||
| amp xq21 2 | 9 (2%) | 490 |
1e-05 (0.000132) |
0.0539 (0.122) |
0.774 (0.901) |
0.52 (0.681) |
0.0914 (0.184) |
0.0743 (0.156) |
0.204 (0.329) |
0.0712 (0.153) |
1 (1.00) |
0.208 (0.332) |
| amp xq22 3 | 15 (3%) | 484 |
0.00071 (0.00357) |
0.715 (0.853) |
0.775 (0.901) |
0.516 (0.679) |
0.755 (0.888) |
0.9 (0.997) |
1 (1.00) |
0.636 (0.788) |
0.493 (0.656) |
1 (1.00) |
| amp xq24 | 9 (2%) | 490 |
3e-05 (0.000343) |
0.0549 (0.124) |
0.541 (0.701) |
0.705 (0.845) |
0.0922 (0.184) |
0.0738 (0.156) |
0.203 (0.329) |
0.073 (0.155) |
1 (1.00) |
0.204 (0.329) |
| amp xq24 | 9 (2%) | 490 |
1e-05 (0.000132) |
0.053 (0.121) |
0.724 (0.862) |
0.635 (0.788) |
0.204 (0.329) |
0.0744 (0.156) |
0.205 (0.329) |
0.0709 (0.152) |
1 (1.00) |
0.206 (0.33) |
| amp xq28 | 10 (2%) | 489 |
4e-05 (0.000413) |
0.129 (0.231) |
0.54 (0.701) |
0.271 (0.408) |
0.281 (0.416) |
0.228 (0.358) |
0.438 (0.595) |
0.228 (0.359) |
0.914 (1.00) |
0.4 (0.556) |
| del 4q34 3 | 5 (1%) | 494 |
0.0151 (0.0454) |
0.168 (0.288) |
0.771 (0.901) |
0.514 (0.678) |
0.384 (0.539) |
0.573 (0.727) |
0.238 (0.371) |
0.0727 (0.155) |
1 (1.00) |
0.0772 (0.161) |
| del 16q23 3 | 6 (1%) | 493 |
0.0221 (0.06) |
0.146 (0.256) |
0.121 (0.218) |
0.404 (0.559) |
0.121 (0.218) |
0.144 (0.253) |
0.226 (0.356) |
0.207 (0.331) |
0.0659 (0.144) |
0.0603 (0.135) |
| del 17p13 1 | 8 (2%) | 491 |
0.0125 (0.0382) |
0.414 (0.567) |
0.634 (0.788) |
0.392 (0.55) |
0.634 (0.788) |
0.601 (0.758) |
0.0924 (0.184) |
0.161 (0.277) |
0.126 (0.227) |
0.205 (0.329) |
| del 18q12 3 | 4 (1%) | 495 |
0.0019 (0.00807) |
0.183 (0.307) |
0.63 (0.787) |
0.393 (0.551) |
0.243 (0.377) |
0.317 (0.46) |
0.0744 (0.156) |
0.0911 (0.184) |
0.531 (0.692) |
0.275 (0.409) |
| amp 1p32 3 | 5 (1%) | 494 |
0.131 (0.234) |
0.549 (0.704) |
0.549 (0.704) |
0.7 (0.841) |
0.281 (0.416) |
0.155 (0.271) |
0.555 (0.71) |
0.199 (0.327) |
||
| amp 1p31 1 | 5 (1%) | 494 |
0.0868 (0.177) |
0.549 (0.704) |
0.549 (0.704) |
0.964 (1.00) |
0.866 (0.968) |
0.641 (0.79) |
0.844 (0.951) |
0.683 (0.829) |
||
| amp 2q37 2 | 3 (1%) | 496 |
0.188 (0.312) |
0.548 (0.704) |
0.494 (0.657) |
0.59 (0.745) |
0.201 (0.328) |
0.267 (0.406) |
||||
| amp 6p21 2 | 4 (1%) | 495 |
0.107 (0.202) |
0.792 (0.909) |
0.368 (0.52) |
0.363 (0.516) |
0.667 (0.815) |
0.746 (0.877) |
0.115 (0.212) |
0.566 (0.723) |
0.779 (0.902) |
0.192 (0.317) |
| amp 6q12 | 3 (1%) | 496 |
0.364 (0.517) |
0.119 (0.217) |
0.132 (0.236) |
0.674 (0.822) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
||
| del 5p15 2 | 4 (1%) | 495 |
0.107 (0.202) |
0.367 (0.519) |
0.378 (0.532) |
0.275 (0.409) |
0.557 (0.712) |
0.681 (0.827) |
0.403 (0.558) |
0.567 (0.723) |
||
| del 7q34 | 4 (1%) | 495 |
0.73 (0.868) |
0.793 (0.909) |
0.745 (0.877) |
0.675 (0.822) |
0.691 (0.834) |
1 (1.00) |
0.333 (0.477) |
1 (1.00) |
P value = 0.00169 (Fisher's exact test), Q value = 0.0073
Table S1. Gene #1: 'amp_1p36.32' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 1(1P36.32) MUTATED | 4 | 1 | 0 |
| AMP PEAK 1(1P36.32) WILD-TYPE | 52 | 359 | 83 |
Figure S1. Get High-res Image Gene #1: 'amp_1p36.32' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0361 (Fisher's exact test), Q value = 0.089
Table S2. Gene #1: 'amp_1p36.32' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 1(1P36.32) MUTATED | 4 | 1 | 0 | 0 | 0 |
| AMP PEAK 1(1P36.32) WILD-TYPE | 100 | 133 | 86 | 95 | 78 |
Figure S2. Get High-res Image Gene #1: 'amp_1p36.32' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S3. Gene #4: 'amp_1q31.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 4(1Q31.2) MUTATED | 19 | 9 | 1 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 37 | 351 | 82 |
Figure S3. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0241 (Fisher's exact test), Q value = 0.064
Table S4. Gene #4: 'amp_1q31.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 4(1Q31.2) MUTATED | 20 | 3 | 6 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 256 | 151 | 63 |
Figure S4. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0161 (Fisher's exact test), Q value = 0.047
Table S5. Gene #4: 'amp_1q31.2' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 64 | 64 | 42 | 49 |
| AMP PEAK 4(1Q31.2) MUTATED | 0 | 6 | 1 | 5 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 64 | 58 | 41 | 44 |
Figure S5. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.0233 (Fisher's exact test), Q value = 0.063
Table S6. Gene #4: 'amp_1q31.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 4(1Q31.2) MUTATED | 0 | 1 | 3 | 0 | 3 | 5 | 0 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 46 | 27 | 30 | 29 | 44 | 22 | 9 |
Figure S6. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00035 (Fisher's exact test), Q value = 0.0022
Table S7. Gene #4: 'amp_1q31.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 4(1Q31.2) MUTATED | 19 | 3 | 5 | 2 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 149 | 152 | 53 | 114 |
Figure S7. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S8. Gene #4: 'amp_1q31.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 4(1Q31.2) MUTATED | 18 | 3 | 1 | 2 | 5 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 86 | 131 | 85 | 93 | 73 |
Figure S8. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0137 (Fisher's exact test), Q value = 0.041
Table S9. Gene #4: 'amp_1q31.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| AMP PEAK 4(1Q31.2) MUTATED | 15 | 7 | 3 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 144 | 157 | 142 |
Figure S9. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.0293 (Fisher's exact test), Q value = 0.076
Table S10. Gene #4: 'amp_1q31.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 4(1Q31.2) MUTATED | 15 | 3 | 7 |
| AMP PEAK 4(1Q31.2) WILD-TYPE | 149 | 123 | 171 |
Figure S10. Get High-res Image Gene #4: 'amp_1q31.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S11. Gene #5: 'amp_1q43' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 5(1Q43) MUTATED | 20 | 8 | 1 |
| AMP PEAK 5(1Q43) WILD-TYPE | 36 | 352 | 82 |
Figure S11. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00596 (Fisher's exact test), Q value = 0.021
Table S12. Gene #5: 'amp_1q43' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 5(1Q43) MUTATED | 21 | 2 | 6 |
| AMP PEAK 5(1Q43) WILD-TYPE | 255 | 152 | 63 |
Figure S12. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.016 (Fisher's exact test), Q value = 0.047
Table S13. Gene #5: 'amp_1q43' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 64 | 64 | 42 | 49 |
| AMP PEAK 5(1Q43) MUTATED | 0 | 6 | 1 | 5 |
| AMP PEAK 5(1Q43) WILD-TYPE | 64 | 58 | 41 | 44 |
Figure S13. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.0389 (Fisher's exact test), Q value = 0.095
Table S14. Gene #5: 'amp_1q43' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 5(1Q43) MUTATED | 0 | 1 | 4 | 0 | 3 | 4 | 0 |
| AMP PEAK 5(1Q43) WILD-TYPE | 46 | 27 | 29 | 29 | 44 | 23 | 9 |
Figure S14. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 3e-04 (Fisher's exact test), Q value = 0.002
Table S15. Gene #5: 'amp_1q43' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 5(1Q43) MUTATED | 19 | 2 | 5 | 3 |
| AMP PEAK 5(1Q43) WILD-TYPE | 149 | 153 | 53 | 113 |
Figure S15. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S16. Gene #5: 'amp_1q43' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 5(1Q43) MUTATED | 19 | 2 | 1 | 3 | 4 |
| AMP PEAK 5(1Q43) WILD-TYPE | 85 | 132 | 85 | 92 | 74 |
Figure S16. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0191 (Fisher's exact test), Q value = 0.053
Table S17. Gene #5: 'amp_1q43' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 5(1Q43) MUTATED | 18 | 5 | 6 |
| AMP PEAK 5(1Q43) WILD-TYPE | 163 | 146 | 160 |
Figure S17. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00975 (Fisher's exact test), Q value = 0.032
Table S18. Gene #5: 'amp_1q43' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 5(1Q43) MUTATED | 18 | 3 | 8 |
| AMP PEAK 5(1Q43) WILD-TYPE | 160 | 125 | 184 |
Figure S18. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00161 (Fisher's exact test), Q value = 0.0071
Table S19. Gene #5: 'amp_1q43' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| AMP PEAK 5(1Q43) MUTATED | 17 | 5 | 3 |
| AMP PEAK 5(1Q43) WILD-TYPE | 142 | 159 | 142 |
Figure S19. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00225 (Fisher's exact test), Q value = 0.0094
Table S20. Gene #5: 'amp_1q43' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 5(1Q43) MUTATED | 17 | 2 | 6 |
| AMP PEAK 5(1Q43) WILD-TYPE | 147 | 124 | 172 |
Figure S20. Get High-res Image Gene #5: 'amp_1q43' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0484 (Fisher's exact test), Q value = 0.11
Table S21. Gene #6: 'amp_2p16.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 6(2P16.1) MUTATED | 2 | 1 | 0 |
| AMP PEAK 6(2P16.1) WILD-TYPE | 54 | 359 | 83 |
Figure S21. Get High-res Image Gene #6: 'amp_2p16.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00929 (Fisher's exact test), Q value = 0.031
Table S22. Gene #8: 'amp_3p22.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 9(3P22.3) MUTATED | 3 | 1 | 0 |
| AMP PEAK 9(3P22.3) WILD-TYPE | 53 | 359 | 83 |
Figure S22. Get High-res Image Gene #8: 'amp_3p22.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.016 (Fisher's exact test), Q value = 0.047
Table S23. Gene #9: 'amp_3p14.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 10(3P14.1) MUTATED | 3 | 2 | 0 |
| AMP PEAK 10(3P14.1) WILD-TYPE | 53 | 358 | 83 |
Figure S23. Get High-res Image Gene #9: 'amp_3p14.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00038 (Fisher's exact test), Q value = 0.0023
Table S24. Gene #10: 'amp_4p16.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 11(4P16.1) MUTATED | 5 | 2 | 0 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 51 | 358 | 83 |
Figure S24. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0109 (Fisher's exact test), Q value = 0.034
Table S25. Gene #10: 'amp_4p16.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 11(4P16.1) MUTATED | 1 | 6 | 0 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 275 | 148 | 69 |
Figure S25. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0321 (Fisher's exact test), Q value = 0.082
Table S26. Gene #10: 'amp_4p16.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 11(4P16.1) MUTATED | 1 | 6 | 0 | 0 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 167 | 149 | 58 | 116 |
Figure S26. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0105 (Fisher's exact test), Q value = 0.034
Table S27. Gene #10: 'amp_4p16.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 11(4P16.1) MUTATED | 0 | 6 | 0 | 0 | 1 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 104 | 128 | 86 | 95 | 77 |
Figure S27. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0333 (Fisher's exact test), Q value = 0.085
Table S28. Gene #10: 'amp_4p16.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 11(4P16.1) MUTATED | 2 | 5 | 0 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 179 | 146 | 166 |
Figure S28. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00635 (Fisher's exact test), Q value = 0.022
Table S29. Gene #10: 'amp_4p16.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 11(4P16.1) MUTATED | 2 | 5 | 0 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 176 | 123 | 192 |
Figure S29. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0475 (Fisher's exact test), Q value = 0.11
Table S30. Gene #10: 'amp_4p16.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 11(4P16.1) MUTATED | 3 | 4 | 0 |
| AMP PEAK 11(4P16.1) WILD-TYPE | 161 | 122 | 178 |
Figure S30. Get High-res Image Gene #10: 'amp_4p16.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.0014
Table S31. Gene #11: 'amp_4q28.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 12(4Q28.2) MUTATED | 5 | 1 | 0 |
| AMP PEAK 12(4Q28.2) WILD-TYPE | 51 | 359 | 83 |
Figure S31. Get High-res Image Gene #11: 'amp_4q28.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.037 (Fisher's exact test), Q value = 0.091
Table S32. Gene #11: 'amp_4q28.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 12(4Q28.2) MUTATED | 1 | 5 | 0 |
| AMP PEAK 12(4Q28.2) WILD-TYPE | 275 | 149 | 69 |
Figure S32. Get High-res Image Gene #11: 'amp_4q28.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0289 (Fisher's exact test), Q value = 0.075
Table S33. Gene #11: 'amp_4q28.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 12(4Q28.2) MUTATED | 0 | 5 | 0 | 0 | 1 |
| AMP PEAK 12(4Q28.2) WILD-TYPE | 104 | 129 | 86 | 95 | 77 |
Figure S33. Get High-res Image Gene #11: 'amp_4q28.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0182 (Fisher's exact test), Q value = 0.053
Table S34. Gene #11: 'amp_4q28.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 12(4Q28.2) MUTATED | 2 | 4 | 0 |
| AMP PEAK 12(4Q28.2) WILD-TYPE | 176 | 124 | 192 |
Figure S34. Get High-res Image Gene #11: 'amp_4q28.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00307 (Fisher's exact test), Q value = 0.012
Table S35. Gene #12: 'amp_4q31.21' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 13(4Q31.21) MUTATED | 5 | 5 | 0 |
| AMP PEAK 13(4Q31.21) WILD-TYPE | 51 | 355 | 83 |
Figure S35. Get High-res Image Gene #12: 'amp_4q31.21' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00057 (Fisher's exact test), Q value = 0.0031
Table S36. Gene #13: 'amp_4q32.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 14(4Q32.3) MUTATED | 5 | 2 | 0 |
| AMP PEAK 14(4Q32.3) WILD-TYPE | 51 | 358 | 83 |
Figure S36. Get High-res Image Gene #13: 'amp_4q32.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0116 (Fisher's exact test), Q value = 0.036
Table S37. Gene #13: 'amp_4q32.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 14(4Q32.3) MUTATED | 1 | 6 | 0 |
| AMP PEAK 14(4Q32.3) WILD-TYPE | 275 | 148 | 69 |
Figure S37. Get High-res Image Gene #13: 'amp_4q32.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0324 (Fisher's exact test), Q value = 0.083
Table S38. Gene #13: 'amp_4q32.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 14(4Q32.3) MUTATED | 1 | 6 | 0 | 0 |
| AMP PEAK 14(4Q32.3) WILD-TYPE | 167 | 149 | 58 | 116 |
Figure S38. Get High-res Image Gene #13: 'amp_4q32.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0191 (Fisher's exact test), Q value = 0.053
Table S39. Gene #13: 'amp_4q32.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 14(4Q32.3) MUTATED | 1 | 6 | 0 | 0 | 0 |
| AMP PEAK 14(4Q32.3) WILD-TYPE | 103 | 128 | 86 | 95 | 78 |
Figure S39. Get High-res Image Gene #13: 'amp_4q32.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0339 (Fisher's exact test), Q value = 0.086
Table S40. Gene #13: 'amp_4q32.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 14(4Q32.3) MUTATED | 2 | 5 | 0 |
| AMP PEAK 14(4Q32.3) WILD-TYPE | 179 | 146 | 166 |
Figure S40. Get High-res Image Gene #13: 'amp_4q32.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00599 (Fisher's exact test), Q value = 0.021
Table S41. Gene #13: 'amp_4q32.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 14(4Q32.3) MUTATED | 2 | 5 | 0 |
| AMP PEAK 14(4Q32.3) WILD-TYPE | 176 | 123 | 192 |
Figure S41. Get High-res Image Gene #13: 'amp_4q32.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S42. Gene #14: 'amp_5p14.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 15(5P14.3) MUTATED | 23 | 0 | 0 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 33 | 360 | 83 |
Figure S42. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00872 (Fisher's exact test), Q value = 0.029
Table S43. Gene #14: 'amp_5p14.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 15(5P14.3) MUTATED | 7 | 14 | 2 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 269 | 140 | 67 |
Figure S43. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0102 (Fisher's exact test), Q value = 0.033
Table S44. Gene #14: 'amp_5p14.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 15(5P14.3) MUTATED | 7 | 14 | 1 | 1 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 161 | 141 | 57 | 115 |
Figure S44. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
Table S45. Gene #14: 'amp_5p14.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 15(5P14.3) MUTATED | 8 | 14 | 0 | 1 | 0 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 96 | 120 | 86 | 94 | 78 |
Figure S45. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00149 (Fisher's exact test), Q value = 0.0067
Table S46. Gene #14: 'amp_5p14.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 15(5P14.3) MUTATED | 9 | 13 | 1 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 172 | 138 | 165 |
Figure S46. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.001
Table S47. Gene #14: 'amp_5p14.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 15(5P14.3) MUTATED | 9 | 13 | 1 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 169 | 115 | 191 |
Figure S47. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00177 (Fisher's exact test), Q value = 0.0076
Table S48. Gene #14: 'amp_5p14.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 15(5P14.3) MUTATED | 10 | 9 | 1 |
| AMP PEAK 15(5P14.3) WILD-TYPE | 154 | 117 | 177 |
Figure S48. Get High-res Image Gene #14: 'amp_5p14.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S49. Gene #15: 'amp_5q21.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 16(5Q21.1) MUTATED | 19 | 3 | 1 |
| AMP PEAK 16(5Q21.1) WILD-TYPE | 37 | 357 | 82 |
Figure S49. Get High-res Image Gene #15: 'amp_5q21.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00124 (Fisher's exact test), Q value = 0.0057
Table S50. Gene #15: 'amp_5q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 16(5Q21.1) MUTATED | 5 | 14 | 4 |
| AMP PEAK 16(5Q21.1) WILD-TYPE | 271 | 140 | 65 |
Figure S50. Get High-res Image Gene #15: 'amp_5q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00608 (Fisher's exact test), Q value = 0.021
Table S51. Gene #15: 'amp_5q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 16(5Q21.1) MUTATED | 3 | 15 | 2 | 3 |
| AMP PEAK 16(5Q21.1) WILD-TYPE | 165 | 140 | 56 | 113 |
Figure S51. Get High-res Image Gene #15: 'amp_5q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0125 (Fisher's exact test), Q value = 0.038
Table S52. Gene #15: 'amp_5q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 16(5Q21.1) MUTATED | 2 | 14 | 3 | 3 | 1 |
| AMP PEAK 16(5Q21.1) WILD-TYPE | 102 | 120 | 83 | 92 | 77 |
Figure S52. Get High-res Image Gene #15: 'amp_5q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00965 (Fisher's exact test), Q value = 0.032
Table S53. Gene #15: 'amp_5q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 16(5Q21.1) MUTATED | 5 | 14 | 4 |
| AMP PEAK 16(5Q21.1) WILD-TYPE | 176 | 137 | 162 |
Figure S53. Get High-res Image Gene #15: 'amp_5q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00587 (Fisher's exact test), Q value = 0.021
Table S54. Gene #15: 'amp_5q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 16(5Q21.1) MUTATED | 5 | 13 | 5 |
| AMP PEAK 16(5Q21.1) WILD-TYPE | 173 | 115 | 187 |
Figure S54. Get High-res Image Gene #15: 'amp_5q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S55. Gene #16: 'amp_5q21.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 17(5Q21.1) MUTATED | 18 | 2 | 0 |
| AMP PEAK 17(5Q21.1) WILD-TYPE | 38 | 358 | 83 |
Figure S55. Get High-res Image Gene #16: 'amp_5q21.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00096 (Fisher's exact test), Q value = 0.0046
Table S56. Gene #16: 'amp_5q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 17(5Q21.1) MUTATED | 5 | 14 | 1 |
| AMP PEAK 17(5Q21.1) WILD-TYPE | 271 | 140 | 68 |
Figure S56. Get High-res Image Gene #16: 'amp_5q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00338 (Fisher's exact test), Q value = 0.013
Table S57. Gene #16: 'amp_5q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 17(5Q21.1) MUTATED | 3 | 14 | 0 | 3 |
| AMP PEAK 17(5Q21.1) WILD-TYPE | 165 | 141 | 58 | 113 |
Figure S57. Get High-res Image Gene #16: 'amp_5q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00061 (Fisher's exact test), Q value = 0.0032
Table S58. Gene #16: 'amp_5q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 17(5Q21.1) MUTATED | 2 | 14 | 0 | 3 | 1 |
| AMP PEAK 17(5Q21.1) WILD-TYPE | 102 | 120 | 86 | 92 | 77 |
Figure S58. Get High-res Image Gene #16: 'amp_5q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00105 (Fisher's exact test), Q value = 0.005
Table S59. Gene #16: 'amp_5q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 17(5Q21.1) MUTATED | 3 | 14 | 3 |
| AMP PEAK 17(5Q21.1) WILD-TYPE | 178 | 137 | 163 |
Figure S59. Get High-res Image Gene #16: 'amp_5q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00064 (Fisher's exact test), Q value = 0.0033
Table S60. Gene #16: 'amp_5q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 17(5Q21.1) MUTATED | 3 | 13 | 4 |
| AMP PEAK 17(5Q21.1) WILD-TYPE | 175 | 115 | 188 |
Figure S60. Get High-res Image Gene #16: 'amp_5q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S61. Gene #17: 'amp_5q33.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 18(5Q33.1) MUTATED | 18 | 3 | 0 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 38 | 357 | 83 |
Figure S61. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00091
Table S62. Gene #17: 'amp_5q33.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 18(5Q33.1) MUTATED | 4 | 16 | 1 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 272 | 138 | 68 |
Figure S62. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00026 (Fisher's exact test), Q value = 0.0018
Table S63. Gene #17: 'amp_5q33.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 18(5Q33.1) MUTATED | 2 | 16 | 0 | 3 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 166 | 139 | 58 | 113 |
Figure S63. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00079
Table S64. Gene #17: 'amp_5q33.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 18(5Q33.1) MUTATED | 2 | 16 | 1 | 2 | 0 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 102 | 118 | 85 | 93 | 78 |
Figure S64. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00036 (Fisher's exact test), Q value = 0.0022
Table S65. Gene #17: 'amp_5q33.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 18(5Q33.1) MUTATED | 4 | 15 | 2 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 177 | 136 | 164 |
Figure S65. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S66. Gene #17: 'amp_5q33.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 18(5Q33.1) MUTATED | 4 | 15 | 2 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 174 | 113 | 190 |
Figure S66. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00273 (Fisher's exact test), Q value = 0.011
Table S67. Gene #17: 'amp_5q33.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 18(5Q33.1) MUTATED | 5 | 11 | 2 |
| AMP PEAK 18(5Q33.1) WILD-TYPE | 159 | 115 | 176 |
Figure S67. Get High-res Image Gene #17: 'amp_5q33.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S68. Gene #18: 'amp_5q35.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 19(5Q35.2) MUTATED | 18 | 2 | 0 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 38 | 358 | 83 |
Figure S68. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.001
Table S69. Gene #18: 'amp_5q35.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 19(5Q35.2) MUTATED | 4 | 15 | 1 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 272 | 139 | 68 |
Figure S69. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0387 (Fisher's exact test), Q value = 0.094
Table S70. Gene #18: 'amp_5q35.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 19(5Q35.2) MUTATED | 3 | 1 | 0 | 3 | 0 | 4 | 0 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 43 | 27 | 33 | 26 | 47 | 23 | 9 |
Figure S70. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00071 (Fisher's exact test), Q value = 0.0036
Table S71. Gene #18: 'amp_5q35.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 19(5Q35.2) MUTATED | 3 | 15 | 0 | 2 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 165 | 140 | 58 | 114 |
Figure S71. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S72. Gene #18: 'amp_5q35.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 19(5Q35.2) MUTATED | 3 | 15 | 0 | 2 | 0 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 101 | 119 | 86 | 93 | 78 |
Figure S72. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00096 (Fisher's exact test), Q value = 0.0046
Table S73. Gene #18: 'amp_5q35.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 19(5Q35.2) MUTATED | 4 | 14 | 2 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 177 | 137 | 164 |
Figure S73. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00073
Table S74. Gene #18: 'amp_5q35.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 19(5Q35.2) MUTATED | 4 | 14 | 2 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 174 | 114 | 190 |
Figure S74. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0098 (Fisher's exact test), Q value = 0.032
Table S75. Gene #18: 'amp_5q35.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 19(5Q35.2) MUTATED | 5 | 10 | 2 |
| AMP PEAK 19(5Q35.2) WILD-TYPE | 159 | 116 | 176 |
Figure S75. Get High-res Image Gene #18: 'amp_5q35.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0475 (Fisher's exact test), Q value = 0.11
Table S76. Gene #19: 'amp_6p22.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 20(6P22.3) MUTATED | 2 | 1 | 0 |
| AMP PEAK 20(6P22.3) WILD-TYPE | 54 | 359 | 83 |
Figure S76. Get High-res Image Gene #19: 'amp_6p22.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0493 (Fisher's exact test), Q value = 0.11
Table S77. Gene #19: 'amp_6p22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 20(6P22.3) MUTATED | 0 | 3 | 0 |
| AMP PEAK 20(6P22.3) WILD-TYPE | 276 | 151 | 69 |
Figure S77. Get High-res Image Gene #19: 'amp_6p22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0456 (Fisher's exact test), Q value = 0.11
Table S78. Gene #20: 'amp_6p22.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 21(6P22.2) MUTATED | 0 | 3 | 1 |
| AMP PEAK 21(6P22.2) WILD-TYPE | 276 | 151 | 68 |
Figure S78. Get High-res Image Gene #20: 'amp_6p22.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0473 (Fisher's exact test), Q value = 0.11
Table S79. Gene #21: 'amp_6p21.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 22(6P21.31) MUTATED | 2 | 1 | 0 |
| AMP PEAK 22(6P21.31) WILD-TYPE | 54 | 359 | 83 |
Figure S79. Get High-res Image Gene #21: 'amp_6p21.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0493 (Fisher's exact test), Q value = 0.11
Table S80. Gene #23: 'amp_6p12.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 24(6P12.2) MUTATED | 2 | 1 | 0 |
| AMP PEAK 24(6P12.2) WILD-TYPE | 54 | 359 | 83 |
Figure S80. Get High-res Image Gene #23: 'amp_6p12.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0128 (Fisher's exact test), Q value = 0.039
Table S81. Gene #25: 'amp_6q27' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 26(6Q27) MUTATED | 0 | 0 | 0 | 1 | 0 | 3 | 0 |
| AMP PEAK 26(6Q27) WILD-TYPE | 46 | 28 | 33 | 28 | 47 | 24 | 9 |
Figure S81. Get High-res Image Gene #25: 'amp_6q27' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S82. Gene #26: 'amp_7q11.21' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 27(7Q11.21) MUTATED | 18 | 2 | 0 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 38 | 358 | 83 |
Figure S82. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-04 (Fisher's exact test), Q value = 0.00086
Table S83. Gene #26: 'amp_7q11.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 27(7Q11.21) MUTATED | 3 | 15 | 2 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 273 | 139 | 67 |
Figure S83. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0189 (Fisher's exact test), Q value = 0.053
Table S84. Gene #26: 'amp_7q11.21' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 27(7Q11.21) MUTATED | 3 | 1 | 0 | 2 | 0 | 5 | 0 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 43 | 27 | 33 | 27 | 47 | 22 | 9 |
Figure S84. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00058 (Fisher's exact test), Q value = 0.0031
Table S85. Gene #26: 'amp_7q11.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 27(7Q11.21) MUTATED | 3 | 15 | 1 | 1 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 165 | 140 | 57 | 115 |
Figure S85. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00029 (Fisher's exact test), Q value = 0.0019
Table S86. Gene #26: 'amp_7q11.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 27(7Q11.21) MUTATED | 2 | 15 | 1 | 1 | 1 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 102 | 119 | 85 | 94 | 77 |
Figure S86. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00311 (Fisher's exact test), Q value = 0.012
Table S87. Gene #26: 'amp_7q11.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 27(7Q11.21) MUTATED | 5 | 13 | 2 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 176 | 138 | 164 |
Figure S87. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00047 (Fisher's exact test), Q value = 0.0026
Table S88. Gene #26: 'amp_7q11.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 27(7Q11.21) MUTATED | 5 | 13 | 2 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 173 | 115 | 190 |
Figure S88. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0239 (Fisher's exact test), Q value = 0.064
Table S89. Gene #26: 'amp_7q11.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 27(7Q11.21) MUTATED | 6 | 9 | 2 |
| AMP PEAK 27(7Q11.21) WILD-TYPE | 158 | 117 | 176 |
Figure S89. Get High-res Image Gene #26: 'amp_7q11.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S90. Gene #27: 'amp_7q21.11' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 28(7Q21.11) MUTATED | 20 | 1 | 0 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 36 | 359 | 83 |
Figure S90. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00035 (Fisher's exact test), Q value = 0.0022
Table S91. Gene #27: 'amp_7q21.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 28(7Q21.11) MUTATED | 4 | 15 | 2 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 272 | 139 | 67 |
Figure S91. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00234 (Fisher's exact test), Q value = 0.0097
Table S92. Gene #27: 'amp_7q21.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 28(7Q21.11) MUTATED | 3 | 15 | 1 | 2 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 165 | 140 | 57 | 114 |
Figure S92. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00064 (Fisher's exact test), Q value = 0.0033
Table S93. Gene #27: 'amp_7q21.11' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 28(7Q21.11) MUTATED | 2 | 15 | 1 | 2 | 1 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 102 | 119 | 85 | 93 | 77 |
Figure S93. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00155 (Fisher's exact test), Q value = 0.0069
Table S94. Gene #27: 'amp_7q21.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 28(7Q21.11) MUTATED | 5 | 14 | 2 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 176 | 137 | 164 |
Figure S94. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00058
Table S95. Gene #27: 'amp_7q21.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 28(7Q21.11) MUTATED | 5 | 14 | 2 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 173 | 114 | 190 |
Figure S95. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00281 (Fisher's exact test), Q value = 0.011
Table S96. Gene #27: 'amp_7q21.11' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 28(7Q21.11) MUTATED | 5 | 11 | 2 |
| AMP PEAK 28(7Q21.11) WILD-TYPE | 159 | 115 | 176 |
Figure S96. Get High-res Image Gene #27: 'amp_7q21.11' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S97. Gene #28: 'amp_7q31.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 29(7Q31.1) MUTATED | 19 | 2 | 1 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 37 | 358 | 82 |
Figure S97. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S98. Gene #28: 'amp_7q31.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 29(7Q31.1) MUTATED | 2 | 18 | 2 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 274 | 136 | 67 |
Figure S98. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0113 (Fisher's exact test), Q value = 0.035
Table S99. Gene #28: 'amp_7q31.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 29(7Q31.1) MUTATED | 5 | 1 | 0 | 2 | 0 | 5 | 0 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 41 | 27 | 33 | 27 | 47 | 22 | 9 |
Figure S99. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 1e-04 (Fisher's exact test), Q value = 0.00086
Table S100. Gene #28: 'amp_7q31.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 29(7Q31.1) MUTATED | 3 | 17 | 1 | 1 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 165 | 138 | 57 | 115 |
Figure S100. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S101. Gene #28: 'amp_7q31.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 29(7Q31.1) MUTATED | 2 | 17 | 1 | 1 | 1 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 102 | 117 | 85 | 94 | 77 |
Figure S101. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
Table S102. Gene #28: 'amp_7q31.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 29(7Q31.1) MUTATED | 5 | 16 | 1 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 176 | 135 | 165 |
Figure S102. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S103. Gene #28: 'amp_7q31.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 29(7Q31.1) MUTATED | 5 | 16 | 1 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 173 | 112 | 191 |
Figure S103. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 4e-04 (Fisher's exact test), Q value = 0.0023
Table S104. Gene #28: 'amp_7q31.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 29(7Q31.1) MUTATED | 6 | 12 | 1 |
| AMP PEAK 29(7Q31.1) WILD-TYPE | 158 | 114 | 177 |
Figure S104. Get High-res Image Gene #28: 'amp_7q31.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S105. Gene #29: 'amp_7q34' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 30(7Q34) MUTATED | 19 | 2 | 1 |
| AMP PEAK 30(7Q34) WILD-TYPE | 37 | 358 | 82 |
Figure S105. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #1: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S106. Gene #29: 'amp_7q34' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 30(7Q34) MUTATED | 3 | 16 | 3 |
| AMP PEAK 30(7Q34) WILD-TYPE | 273 | 138 | 66 |
Figure S106. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0042 (Fisher's exact test), Q value = 0.016
Table S107. Gene #29: 'amp_7q34' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 30(7Q34) MUTATED | 4 | 1 | 0 | 2 | 0 | 6 | 0 |
| AMP PEAK 30(7Q34) WILD-TYPE | 42 | 27 | 33 | 27 | 47 | 21 | 9 |
Figure S107. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 4e-04 (Fisher's exact test), Q value = 0.0023
Table S108. Gene #29: 'amp_7q34' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 30(7Q34) MUTATED | 3 | 16 | 2 | 1 |
| AMP PEAK 30(7Q34) WILD-TYPE | 165 | 139 | 56 | 115 |
Figure S108. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 2e-04 (Fisher's exact test), Q value = 0.0014
Table S109. Gene #29: 'amp_7q34' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 30(7Q34) MUTATED | 2 | 16 | 2 | 1 | 1 |
| AMP PEAK 30(7Q34) WILD-TYPE | 102 | 118 | 84 | 94 | 77 |
Figure S109. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 0.00024
Table S110. Gene #29: 'amp_7q34' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 30(7Q34) MUTATED | 4 | 17 | 1 |
| AMP PEAK 30(7Q34) WILD-TYPE | 177 | 134 | 165 |
Figure S110. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S111. Gene #29: 'amp_7q34' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 30(7Q34) MUTATED | 4 | 17 | 1 |
| AMP PEAK 30(7Q34) WILD-TYPE | 174 | 111 | 191 |
Figure S111. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0107 (Fisher's exact test), Q value = 0.034
Table S112. Gene #29: 'amp_7q34' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 30(7Q34) MUTATED | 5 | 11 | 3 |
| AMP PEAK 30(7Q34) WILD-TYPE | 159 | 115 | 175 |
Figure S112. Get High-res Image Gene #29: 'amp_7q34' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0217 (Fisher's exact test), Q value = 0.059
Table S113. Gene #30: 'amp_9q22.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 31(9Q22.31) MUTATED | 3 | 2 | 1 |
| AMP PEAK 31(9Q22.31) WILD-TYPE | 53 | 358 | 82 |
Figure S113. Get High-res Image Gene #30: 'amp_9q22.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0213 (Fisher's exact test), Q value = 0.058
Table S114. Gene #31: 'amp_9q31.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 32(9Q31.1) MUTATED | 3 | 2 | 1 |
| AMP PEAK 32(9Q31.1) WILD-TYPE | 53 | 358 | 82 |
Figure S114. Get High-res Image Gene #31: 'amp_9q31.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0437 (Fisher's exact test), Q value = 0.1
Table S115. Gene #32: 'amp_9q34.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 33(9Q34.3) MUTATED | 3 | 3 | 1 |
| AMP PEAK 33(9Q34.3) WILD-TYPE | 53 | 357 | 82 |
Figure S115. Get High-res Image Gene #32: 'amp_9q34.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0493 (Fisher's exact test), Q value = 0.11
Table S116. Gene #33: 'amp_10q24.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 34(10Q24.2) MUTATED | 2 | 1 | 0 |
| AMP PEAK 34(10Q24.2) WILD-TYPE | 54 | 359 | 83 |
Figure S116. Get High-res Image Gene #33: 'amp_10q24.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0495 (Fisher's exact test), Q value = 0.11
Table S117. Gene #33: 'amp_10q24.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 34(10Q24.2) MUTATED | 0 | 3 | 0 |
| AMP PEAK 34(10Q24.2) WILD-TYPE | 276 | 151 | 69 |
Figure S117. Get High-res Image Gene #33: 'amp_10q24.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0267 (Fisher's exact test), Q value = 0.07
Table S118. Gene #33: 'amp_10q24.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 34(10Q24.2) MUTATED | 0 | 3 | 0 |
| AMP PEAK 34(10Q24.2) WILD-TYPE | 181 | 148 | 166 |
Figure S118. Get High-res Image Gene #33: 'amp_10q24.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0168 (Fisher's exact test), Q value = 0.049
Table S119. Gene #33: 'amp_10q24.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 34(10Q24.2) MUTATED | 0 | 3 | 0 |
| AMP PEAK 34(10Q24.2) WILD-TYPE | 178 | 125 | 192 |
Figure S119. Get High-res Image Gene #33: 'amp_10q24.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0101 (Fisher's exact test), Q value = 0.033
Table S120. Gene #34: 'amp_10q25.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 35(10Q25.1) MUTATED | 3 | 1 | 0 |
| AMP PEAK 35(10Q25.1) WILD-TYPE | 53 | 359 | 83 |
Figure S120. Get High-res Image Gene #34: 'amp_10q25.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00266 (Fisher's exact test), Q value = 0.011
Table S121. Gene #35: 'amp_11p13' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 36(11P13) MUTATED | 4 | 2 | 2 |
| AMP PEAK 36(11P13) WILD-TYPE | 52 | 358 | 81 |
Figure S121. Get High-res Image Gene #35: 'amp_11p13' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S122. Gene #36: 'amp_12p11.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 37(12P11.1) MUTATED | 15 | 1 | 0 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 41 | 359 | 83 |
Figure S122. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S123. Gene #36: 'amp_12p11.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 37(12P11.1) MUTATED | 2 | 14 | 0 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 274 | 140 | 69 |
Figure S123. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S124. Gene #36: 'amp_12p11.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 37(12P11.1) MUTATED | 1 | 14 | 0 | 1 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 167 | 141 | 58 | 115 |
Figure S124. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S125. Gene #36: 'amp_12p11.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 37(12P11.1) MUTATED | 1 | 14 | 0 | 1 | 0 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 103 | 120 | 86 | 94 | 78 |
Figure S125. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 7e-05 (Fisher's exact test), Q value = 0.00066
Table S126. Gene #36: 'amp_12p11.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 37(12P11.1) MUTATED | 2 | 13 | 1 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 179 | 138 | 165 |
Figure S126. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S127. Gene #36: 'amp_12p11.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 37(12P11.1) MUTATED | 2 | 13 | 1 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 176 | 115 | 191 |
Figure S127. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00242 (Fisher's exact test), Q value = 0.0099
Table S128. Gene #36: 'amp_12p11.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 37(12P11.1) MUTATED | 3 | 9 | 1 |
| AMP PEAK 37(12P11.1) WILD-TYPE | 161 | 117 | 177 |
Figure S128. Get High-res Image Gene #36: 'amp_12p11.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S129. Gene #37: 'amp_12q21.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 38(12Q21.31) MUTATED | 14 | 1 | 2 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 42 | 359 | 81 |
Figure S129. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S130. Gene #37: 'amp_12q21.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 38(12Q21.31) MUTATED | 2 | 15 | 0 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 274 | 139 | 69 |
Figure S130. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0432 (Fisher's exact test), Q value = 0.1
Table S131. Gene #37: 'amp_12q21.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 38(12Q21.31) MUTATED | 3 | 1 | 0 | 4 | 0 | 3 | 0 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 43 | 27 | 33 | 25 | 47 | 24 | 9 |
Figure S131. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S132. Gene #37: 'amp_12q21.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 38(12Q21.31) MUTATED | 0 | 15 | 0 | 2 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 168 | 140 | 58 | 114 |
Figure S132. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S133. Gene #37: 'amp_12q21.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 38(12Q21.31) MUTATED | 0 | 15 | 1 | 1 | 0 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 104 | 119 | 85 | 94 | 78 |
Figure S133. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00034
Table S134. Gene #37: 'amp_12q21.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 38(12Q21.31) MUTATED | 1 | 14 | 2 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 180 | 137 | 164 |
Figure S134. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S135. Gene #37: 'amp_12q21.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 38(12Q21.31) MUTATED | 1 | 14 | 2 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 177 | 114 | 190 |
Figure S135. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00163 (Fisher's exact test), Q value = 0.0071
Table S136. Gene #37: 'amp_12q21.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 38(12Q21.31) MUTATED | 2 | 10 | 2 |
| AMP PEAK 38(12Q21.31) WILD-TYPE | 162 | 116 | 176 |
Figure S136. Get High-res Image Gene #37: 'amp_12q21.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S137. Gene #38: 'amp_12q23.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 39(12Q23.1) MUTATED | 14 | 2 | 1 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 42 | 358 | 82 |
Figure S137. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S138. Gene #38: 'amp_12q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 39(12Q23.1) MUTATED | 3 | 14 | 0 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 273 | 140 | 69 |
Figure S138. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 0.00097
Table S139. Gene #38: 'amp_12q23.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 39(12Q23.1) MUTATED | 1 | 14 | 0 | 2 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 167 | 141 | 58 | 114 |
Figure S139. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00024
Table S140. Gene #38: 'amp_12q23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 39(12Q23.1) MUTATED | 0 | 14 | 0 | 2 | 1 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 104 | 120 | 86 | 93 | 77 |
Figure S140. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00022 (Fisher's exact test), Q value = 0.0015
Table S141. Gene #38: 'amp_12q23.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 39(12Q23.1) MUTATED | 3 | 13 | 1 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 178 | 138 | 165 |
Figure S141. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S142. Gene #38: 'amp_12q23.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 39(12Q23.1) MUTATED | 2 | 13 | 2 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 176 | 115 | 190 |
Figure S142. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00819 (Fisher's exact test), Q value = 0.028
Table S143. Gene #38: 'amp_12q23.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 39(12Q23.1) MUTATED | 3 | 9 | 2 |
| AMP PEAK 39(12Q23.1) WILD-TYPE | 161 | 117 | 176 |
Figure S143. Get High-res Image Gene #38: 'amp_12q23.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
Table S144. Gene #39: 'amp_13q14.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 40(13Q14.2) MUTATED | 5 | 1 | 0 |
| AMP PEAK 40(13Q14.2) WILD-TYPE | 51 | 359 | 83 |
Figure S144. Get High-res Image Gene #39: 'amp_13q14.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00059 (Fisher's exact test), Q value = 0.0031
Table S145. Gene #40: 'amp_13q34' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 41(13Q34) MUTATED | 5 | 2 | 0 |
| AMP PEAK 41(13Q34) WILD-TYPE | 51 | 358 | 83 |
Figure S145. Get High-res Image Gene #40: 'amp_13q34' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0493 (Fisher's exact test), Q value = 0.11
Table S146. Gene #40: 'amp_13q34' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 41(13Q34) MUTATED | 1 | 4 | 2 |
| AMP PEAK 41(13Q34) WILD-TYPE | 275 | 150 | 67 |
Figure S146. Get High-res Image Gene #40: 'amp_13q34' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0357 (Fisher's exact test), Q value = 0.089
Table S147. Gene #40: 'amp_13q34' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 41(13Q34) MUTATED | 1 | 0 | 0 | 0 | 0 | 3 | 0 |
| AMP PEAK 41(13Q34) WILD-TYPE | 45 | 28 | 33 | 29 | 47 | 24 | 9 |
Figure S147. Get High-res Image Gene #40: 'amp_13q34' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S148. Gene #41: 'amp_14q12' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 42(14Q12) MUTATED | 10 | 2 | 1 |
| AMP PEAK 42(14Q12) WILD-TYPE | 46 | 358 | 82 |
Figure S148. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00193 (Fisher's exact test), Q value = 0.0082
Table S149. Gene #41: 'amp_14q12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 42(14Q12) MUTATED | 3 | 10 | 0 |
| AMP PEAK 42(14Q12) WILD-TYPE | 273 | 144 | 69 |
Figure S149. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00399 (Fisher's exact test), Q value = 0.015
Table S150. Gene #41: 'amp_14q12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 42(14Q12) MUTATED | 3 | 10 | 0 | 0 |
| AMP PEAK 42(14Q12) WILD-TYPE | 165 | 145 | 58 | 116 |
Figure S150. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00315 (Fisher's exact test), Q value = 0.013
Table S151. Gene #41: 'amp_14q12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 42(14Q12) MUTATED | 1 | 10 | 1 | 0 | 1 |
| AMP PEAK 42(14Q12) WILD-TYPE | 103 | 124 | 85 | 95 | 77 |
Figure S151. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0168 (Fisher's exact test), Q value = 0.049
Table S152. Gene #41: 'amp_14q12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 42(14Q12) MUTATED | 2 | 9 | 2 |
| AMP PEAK 42(14Q12) WILD-TYPE | 179 | 142 | 164 |
Figure S152. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00335 (Fisher's exact test), Q value = 0.013
Table S153. Gene #41: 'amp_14q12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 42(14Q12) MUTATED | 2 | 9 | 2 |
| AMP PEAK 42(14Q12) WILD-TYPE | 176 | 119 | 190 |
Figure S153. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0213 (Fisher's exact test), Q value = 0.058
Table S154. Gene #41: 'amp_14q12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 42(14Q12) MUTATED | 4 | 7 | 1 |
| AMP PEAK 42(14Q12) WILD-TYPE | 160 | 119 | 177 |
Figure S154. Get High-res Image Gene #41: 'amp_14q12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S155. Gene #42: 'amp_14q32.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 43(14Q32.31) MUTATED | 10 | 2 | 1 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 46 | 358 | 82 |
Figure S155. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00091
Table S156. Gene #42: 'amp_14q32.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 43(14Q32.31) MUTATED | 1 | 11 | 1 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 275 | 143 | 68 |
Figure S156. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00061 (Fisher's exact test), Q value = 0.0032
Table S157. Gene #42: 'amp_14q32.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 43(14Q32.31) MUTATED | 2 | 11 | 0 | 0 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 166 | 144 | 58 | 116 |
Figure S157. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00031 (Fisher's exact test), Q value = 0.002
Table S158. Gene #42: 'amp_14q32.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 43(14Q32.31) MUTATED | 1 | 11 | 0 | 0 | 1 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 103 | 123 | 86 | 95 | 77 |
Figure S158. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00037 (Fisher's exact test), Q value = 0.0023
Table S159. Gene #42: 'amp_14q32.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 43(14Q32.31) MUTATED | 3 | 10 | 0 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 178 | 141 | 166 |
Figure S159. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
Table S160. Gene #42: 'amp_14q32.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 43(14Q32.31) MUTATED | 3 | 10 | 0 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 175 | 118 | 192 |
Figure S160. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 8e-04 (Fisher's exact test), Q value = 0.004
Table S161. Gene #42: 'amp_14q32.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 43(14Q32.31) MUTATED | 4 | 8 | 0 |
| AMP PEAK 43(14Q32.31) WILD-TYPE | 160 | 118 | 178 |
Figure S161. Get High-res Image Gene #42: 'amp_14q32.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S162. Gene #43: 'amp_18q12.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 46(18Q12.1) MUTATED | 5 | 0 | 2 |
| AMP PEAK 46(18Q12.1) WILD-TYPE | 51 | 360 | 81 |
Figure S162. Get High-res Image Gene #43: 'amp_18q12.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0379 (Fisher's exact test), Q value = 0.093
Table S163. Gene #43: 'amp_18q12.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 46(18Q12.1) MUTATED | 1 | 5 | 1 |
| AMP PEAK 46(18Q12.1) WILD-TYPE | 275 | 149 | 68 |
Figure S163. Get High-res Image Gene #43: 'amp_18q12.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0304 (Fisher's exact test), Q value = 0.079
Table S164. Gene #43: 'amp_18q12.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 46(18Q12.1) MUTATED | 1 | 5 | 1 |
| AMP PEAK 46(18Q12.1) WILD-TYPE | 177 | 123 | 191 |
Figure S164. Get High-res Image Gene #43: 'amp_18q12.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
Table S165. Gene #44: 'amp_18q22.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 47(18Q22.1) MUTATED | 5 | 1 | 1 |
| AMP PEAK 47(18Q22.1) WILD-TYPE | 51 | 359 | 82 |
Figure S165. Get High-res Image Gene #44: 'amp_18q22.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00104 (Fisher's exact test), Q value = 0.0049
Table S166. Gene #45: 'amp_18q22.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 48(18Q22.3) MUTATED | 5 | 2 | 1 |
| AMP PEAK 48(18Q22.3) WILD-TYPE | 51 | 358 | 82 |
Figure S166. Get High-res Image Gene #45: 'amp_18q22.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0246 (Fisher's exact test), Q value = 0.066
Table S167. Gene #45: 'amp_18q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 48(18Q22.3) MUTATED | 1 | 5 | 2 |
| AMP PEAK 48(18Q22.3) WILD-TYPE | 275 | 149 | 67 |
Figure S167. Get High-res Image Gene #45: 'amp_18q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.035 (Fisher's exact test), Q value = 0.088
Table S168. Gene #45: 'amp_18q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 48(18Q22.3) MUTATED | 0 | 5 | 2 | 1 |
| AMP PEAK 48(18Q22.3) WILD-TYPE | 168 | 150 | 56 | 115 |
Figure S168. Get High-res Image Gene #45: 'amp_18q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0263 (Fisher's exact test), Q value = 0.069
Table S169. Gene #45: 'amp_18q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 48(18Q22.3) MUTATED | 1 | 6 | 1 |
| AMP PEAK 48(18Q22.3) WILD-TYPE | 180 | 145 | 165 |
Figure S169. Get High-res Image Gene #45: 'amp_18q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00662 (Fisher's exact test), Q value = 0.023
Table S170. Gene #45: 'amp_18q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 48(18Q22.3) MUTATED | 1 | 6 | 1 |
| AMP PEAK 48(18Q22.3) WILD-TYPE | 177 | 122 | 191 |
Figure S170. Get High-res Image Gene #45: 'amp_18q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S171. Gene #46: 'amp_19p13.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 49(19P13.3) MUTATED | 7 | 1 | 0 |
| AMP PEAK 49(19P13.3) WILD-TYPE | 49 | 359 | 83 |
Figure S171. Get High-res Image Gene #46: 'amp_19p13.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00434 (Fisher's exact test), Q value = 0.016
Table S172. Gene #46: 'amp_19p13.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 49(19P13.3) MUTATED | 1 | 7 | 0 |
| AMP PEAK 49(19P13.3) WILD-TYPE | 275 | 147 | 69 |
Figure S172. Get High-res Image Gene #46: 'amp_19p13.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0115 (Fisher's exact test), Q value = 0.035
Table S173. Gene #46: 'amp_19p13.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 49(19P13.3) MUTATED | 1 | 7 | 0 | 0 |
| AMP PEAK 49(19P13.3) WILD-TYPE | 167 | 148 | 58 | 116 |
Figure S173. Get High-res Image Gene #46: 'amp_19p13.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00561 (Fisher's exact test), Q value = 0.02
Table S174. Gene #46: 'amp_19p13.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 49(19P13.3) MUTATED | 1 | 7 | 0 | 0 | 0 |
| AMP PEAK 49(19P13.3) WILD-TYPE | 103 | 127 | 86 | 95 | 78 |
Figure S174. Get High-res Image Gene #46: 'amp_19p13.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00188 (Fisher's exact test), Q value = 0.008
Table S175. Gene #46: 'amp_19p13.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 49(19P13.3) MUTATED | 1 | 7 | 0 |
| AMP PEAK 49(19P13.3) WILD-TYPE | 180 | 144 | 166 |
Figure S175. Get High-res Image Gene #46: 'amp_19p13.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00038 (Fisher's exact test), Q value = 0.0023
Table S176. Gene #46: 'amp_19p13.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 49(19P13.3) MUTATED | 0 | 7 | 1 |
| AMP PEAK 49(19P13.3) WILD-TYPE | 178 | 121 | 191 |
Figure S176. Get High-res Image Gene #46: 'amp_19p13.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S177. Gene #47: 'amp_20p13' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 50(20P13) MUTATED | 13 | 0 | 1 |
| AMP PEAK 50(20P13) WILD-TYPE | 43 | 360 | 82 |
Figure S177. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #1: 'CN_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00066
Table S178. Gene #47: 'amp_20p13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 50(20P13) MUTATED | 1 | 12 | 1 |
| AMP PEAK 50(20P13) WILD-TYPE | 275 | 142 | 68 |
Figure S178. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.017 (Fisher's exact test), Q value = 0.05
Table S179. Gene #47: 'amp_20p13' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 50(20P13) MUTATED | 1 | 1 | 0 | 3 | 0 | 4 | 0 |
| AMP PEAK 50(20P13) WILD-TYPE | 45 | 27 | 33 | 26 | 47 | 23 | 9 |
Figure S179. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00042 (Fisher's exact test), Q value = 0.0024
Table S180. Gene #47: 'amp_20p13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 50(20P13) MUTATED | 1 | 12 | 0 | 1 |
| AMP PEAK 50(20P13) WILD-TYPE | 167 | 143 | 58 | 115 |
Figure S180. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00079
Table S181. Gene #47: 'amp_20p13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 50(20P13) MUTATED | 1 | 12 | 0 | 1 | 0 |
| AMP PEAK 50(20P13) WILD-TYPE | 103 | 122 | 86 | 94 | 78 |
Figure S181. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00048 (Fisher's exact test), Q value = 0.0027
Table S182. Gene #47: 'amp_20p13' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 50(20P13) MUTATED | 2 | 11 | 1 |
| AMP PEAK 50(20P13) WILD-TYPE | 179 | 140 | 165 |
Figure S182. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00058
Table S183. Gene #47: 'amp_20p13' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 50(20P13) MUTATED | 2 | 11 | 1 |
| AMP PEAK 50(20P13) WILD-TYPE | 176 | 117 | 191 |
Figure S183. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0221 (Fisher's exact test), Q value = 0.06
Table S184. Gene #47: 'amp_20p13' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 50(20P13) MUTATED | 3 | 7 | 1 |
| AMP PEAK 50(20P13) WILD-TYPE | 161 | 119 | 177 |
Figure S184. Get High-res Image Gene #47: 'amp_20p13' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S185. Gene #48: 'amp_20q13.11' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 51(20Q13.11) MUTATED | 12 | 0 | 2 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 44 | 360 | 81 |
Figure S185. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #1: 'CN_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
Table S186. Gene #48: 'amp_20q13.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 51(20Q13.11) MUTATED | 1 | 12 | 1 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 275 | 142 | 68 |
Figure S186. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0486 (Fisher's exact test), Q value = 0.11
Table S187. Gene #48: 'amp_20q13.11' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 51(20Q13.11) MUTATED | 1 | 1 | 0 | 3 | 0 | 3 | 0 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 45 | 27 | 33 | 26 | 47 | 24 | 9 |
Figure S187. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00036 (Fisher's exact test), Q value = 0.0022
Table S188. Gene #48: 'amp_20q13.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 51(20Q13.11) MUTATED | 1 | 12 | 0 | 1 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 167 | 143 | 58 | 115 |
Figure S188. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00079
Table S189. Gene #48: 'amp_20q13.11' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 51(20Q13.11) MUTATED | 1 | 12 | 0 | 1 | 0 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 103 | 122 | 86 | 94 | 78 |
Figure S189. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.0025
Table S190. Gene #48: 'amp_20q13.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 51(20Q13.11) MUTATED | 2 | 11 | 1 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 179 | 140 | 165 |
Figure S190. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00079
Table S191. Gene #48: 'amp_20q13.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 51(20Q13.11) MUTATED | 2 | 11 | 1 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 176 | 117 | 191 |
Figure S191. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0226 (Fisher's exact test), Q value = 0.061
Table S192. Gene #48: 'amp_20q13.11' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 51(20Q13.11) MUTATED | 3 | 7 | 1 |
| AMP PEAK 51(20Q13.11) WILD-TYPE | 161 | 119 | 177 |
Figure S192. Get High-res Image Gene #48: 'amp_20q13.11' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S193. Gene #49: 'amp_20q13.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 52(20Q13.2) MUTATED | 13 | 0 | 1 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 43 | 360 | 82 |
Figure S193. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00053 (Fisher's exact test), Q value = 0.0029
Table S194. Gene #49: 'amp_20q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 52(20Q13.2) MUTATED | 2 | 11 | 1 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 274 | 143 | 68 |
Figure S194. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0304 (Fisher's exact test), Q value = 0.079
Table S195. Gene #49: 'amp_20q13.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
|---|---|---|---|---|---|---|---|
| ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
| AMP PEAK 52(20Q13.2) MUTATED | 1 | 1 | 0 | 2 | 0 | 4 | 0 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 45 | 27 | 33 | 27 | 47 | 23 | 9 |
Figure S195. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00385 (Fisher's exact test), Q value = 0.015
Table S196. Gene #49: 'amp_20q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 52(20Q13.2) MUTATED | 2 | 11 | 0 | 1 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 166 | 144 | 58 | 115 |
Figure S196. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00134 (Fisher's exact test), Q value = 0.0062
Table S197. Gene #49: 'amp_20q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 52(20Q13.2) MUTATED | 1 | 11 | 0 | 1 | 1 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 103 | 123 | 86 | 94 | 77 |
Figure S197. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00053 (Fisher's exact test), Q value = 0.0029
Table S198. Gene #49: 'amp_20q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 52(20Q13.2) MUTATED | 2 | 11 | 1 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 179 | 140 | 165 |
Figure S198. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0011 (Fisher's exact test), Q value = 0.0052
Table S199. Gene #49: 'amp_20q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 52(20Q13.2) MUTATED | 2 | 10 | 2 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 176 | 118 | 190 |
Figure S199. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0423 (Fisher's exact test), Q value = 0.1
Table S200. Gene #49: 'amp_20q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 52(20Q13.2) MUTATED | 3 | 6 | 1 |
| AMP PEAK 52(20Q13.2) WILD-TYPE | 161 | 120 | 177 |
Figure S200. Get High-res Image Gene #49: 'amp_20q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S201. Gene #50: 'amp_20q13.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 53(20Q13.2) MUTATED | 13 | 0 | 0 |
| AMP PEAK 53(20Q13.2) WILD-TYPE | 43 | 360 | 83 |
Figure S201. Get High-res Image Gene #50: 'amp_20q13.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00161 (Fisher's exact test), Q value = 0.0071
Table S202. Gene #50: 'amp_20q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 53(20Q13.2) MUTATED | 2 | 10 | 1 |
| AMP PEAK 53(20Q13.2) WILD-TYPE | 274 | 144 | 68 |
Figure S202. Get High-res Image Gene #50: 'amp_20q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00976 (Fisher's exact test), Q value = 0.032
Table S203. Gene #50: 'amp_20q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 53(20Q13.2) MUTATED | 2 | 10 | 0 | 1 |
| AMP PEAK 53(20Q13.2) WILD-TYPE | 166 | 145 | 58 | 115 |
Figure S203. Get High-res Image Gene #50: 'amp_20q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00236 (Fisher's exact test), Q value = 0.0097
Table S204. Gene #50: 'amp_20q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 53(20Q13.2) MUTATED | 2 | 10 | 0 | 1 | 0 |
| AMP PEAK 53(20Q13.2) WILD-TYPE | 102 | 124 | 86 | 94 | 78 |
Figure S204. Get High-res Image Gene #50: 'amp_20q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0105 (Fisher's exact test), Q value = 0.034
Table S205. Gene #50: 'amp_20q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 53(20Q13.2) MUTATED | 3 | 9 | 1 |
| AMP PEAK 53(20Q13.2) WILD-TYPE | 178 | 142 | 165 |
Figure S205. Get High-res Image Gene #50: 'amp_20q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00169 (Fisher's exact test), Q value = 0.0073
Table S206. Gene #50: 'amp_20q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 53(20Q13.2) MUTATED | 3 | 9 | 1 |
| AMP PEAK 53(20Q13.2) WILD-TYPE | 175 | 119 | 191 |
Figure S206. Get High-res Image Gene #50: 'amp_20q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00146 (Fisher's exact test), Q value = 0.0066
Table S207. Gene #51: 'amp_21q21.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 54(21Q21.3) MUTATED | 4 | 1 | 1 |
| AMP PEAK 54(21Q21.3) WILD-TYPE | 52 | 359 | 82 |
Figure S207. Get High-res Image Gene #51: 'amp_21q21.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00247 (Fisher's exact test), Q value = 0.01
Table S208. Gene #52: 'amp_22q11.21' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 55(22Q11.21) MUTATED | 2 | 1 | 4 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 54 | 359 | 79 |
Figure S208. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.004 (Fisher's exact test), Q value = 0.015
Table S209. Gene #52: 'amp_22q11.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 55(22Q11.21) MUTATED | 0 | 5 | 2 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 276 | 149 | 67 |
Figure S209. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00833 (Fisher's exact test), Q value = 0.028
Table S210. Gene #52: 'amp_22q11.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 55(22Q11.21) MUTATED | 0 | 5 | 2 | 0 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 168 | 150 | 56 | 116 |
Figure S210. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0397 (Fisher's exact test), Q value = 0.096
Table S211. Gene #52: 'amp_22q11.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 55(22Q11.21) MUTATED | 0 | 5 | 2 | 0 | 0 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 104 | 129 | 84 | 95 | 78 |
Figure S211. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.033 (Fisher's exact test), Q value = 0.084
Table S212. Gene #52: 'amp_22q11.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 55(22Q11.21) MUTATED | 2 | 5 | 0 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 179 | 146 | 166 |
Figure S212. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0306 (Fisher's exact test), Q value = 0.079
Table S213. Gene #52: 'amp_22q11.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 55(22Q11.21) MUTATED | 1 | 5 | 1 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 177 | 123 | 191 |
Figure S213. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0267 (Fisher's exact test), Q value = 0.07
Table S214. Gene #52: 'amp_22q11.21' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| AMP PEAK 55(22Q11.21) MUTATED | 2 | 0 | 5 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 157 | 164 | 140 |
Figure S214. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.0107 (Fisher's exact test), Q value = 0.034
Table S215. Gene #52: 'amp_22q11.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 55(22Q11.21) MUTATED | 2 | 5 | 0 |
| AMP PEAK 55(22Q11.21) WILD-TYPE | 162 | 121 | 178 |
Figure S215. Get High-res Image Gene #52: 'amp_22q11.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S216. Gene #53: 'amp_xp22.12' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 56(XP22.12) MUTATED | 8 | 1 | 1 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 48 | 359 | 82 |
Figure S216. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00029 (Fisher's exact test), Q value = 0.0019
Table S217. Gene #53: 'amp_xp22.12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 56(XP22.12) MUTATED | 0 | 8 | 2 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 276 | 146 | 67 |
Figure S217. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00755 (Fisher's exact test), Q value = 0.026
Table S218. Gene #53: 'amp_xp22.12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 56(XP22.12) MUTATED | 1 | 8 | 1 | 0 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 167 | 147 | 57 | 116 |
Figure S218. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00763 (Fisher's exact test), Q value = 0.026
Table S219. Gene #53: 'amp_xp22.12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 56(XP22.12) MUTATED | 1 | 8 | 1 | 0 | 0 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 103 | 126 | 85 | 95 | 78 |
Figure S219. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0355 (Fisher's exact test), Q value = 0.088
Table S220. Gene #53: 'amp_xp22.12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 56(XP22.12) MUTATED | 2 | 7 | 1 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 179 | 144 | 165 |
Figure S220. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0052 (Fisher's exact test), Q value = 0.019
Table S221. Gene #53: 'amp_xp22.12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 56(XP22.12) MUTATED | 2 | 7 | 1 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 176 | 121 | 191 |
Figure S221. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0336 (Fisher's exact test), Q value = 0.085
Table S222. Gene #53: 'amp_xp22.12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 56(XP22.12) MUTATED | 2 | 6 | 1 |
| AMP PEAK 56(XP22.12) WILD-TYPE | 162 | 120 | 177 |
Figure S222. Get High-res Image Gene #53: 'amp_xp22.12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S223. Gene #54: 'amp_xp11.4' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 57(XP11.4) MUTATED | 9 | 0 | 0 |
| AMP PEAK 57(XP11.4) WILD-TYPE | 47 | 360 | 83 |
Figure S223. Get High-res Image Gene #54: 'amp_xp11.4' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0107 (Fisher's exact test), Q value = 0.034
Table S224. Gene #54: 'amp_xp11.4' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 57(XP11.4) MUTATED | 1 | 6 | 2 |
| AMP PEAK 57(XP11.4) WILD-TYPE | 275 | 148 | 67 |
Figure S224. Get High-res Image Gene #54: 'amp_xp11.4' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S225. Gene #55: 'amp_xp11.22' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 58(XP11.22) MUTATED | 7 | 1 | 0 |
| AMP PEAK 58(XP11.22) WILD-TYPE | 49 | 359 | 83 |
Figure S225. Get High-res Image Gene #55: 'amp_xp11.22' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0117 (Fisher's exact test), Q value = 0.036
Table S226. Gene #55: 'amp_xp11.22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 58(XP11.22) MUTATED | 1 | 6 | 1 |
| AMP PEAK 58(XP11.22) WILD-TYPE | 275 | 148 | 68 |
Figure S226. Get High-res Image Gene #55: 'amp_xp11.22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S227. Gene #56: 'amp_xp11.21' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 59(XP11.21) MUTATED | 8 | 1 | 0 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 48 | 359 | 83 |
Figure S227. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00729 (Fisher's exact test), Q value = 0.025
Table S228. Gene #56: 'amp_xp11.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| AMP PEAK 59(XP11.21) MUTATED | 1 | 7 | 1 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 275 | 147 | 68 |
Figure S228. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0329 (Fisher's exact test), Q value = 0.084
Table S229. Gene #56: 'amp_xp11.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| AMP PEAK 59(XP11.21) MUTATED | 2 | 7 | 0 | 0 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 166 | 148 | 58 | 116 |
Figure S229. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00982 (Fisher's exact test), Q value = 0.032
Table S230. Gene #56: 'amp_xp11.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 59(XP11.21) MUTATED | 2 | 7 | 0 | 0 | 0 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 102 | 127 | 86 | 95 | 78 |
Figure S230. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0185 (Fisher's exact test), Q value = 0.053
Table S231. Gene #56: 'amp_xp11.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| AMP PEAK 59(XP11.21) MUTATED | 3 | 6 | 0 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 178 | 145 | 166 |
Figure S231. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00366 (Fisher's exact test), Q value = 0.014
Table S232. Gene #56: 'amp_xp11.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| AMP PEAK 59(XP11.21) MUTATED | 3 | 6 | 0 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 175 | 122 | 192 |
Figure S232. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0189 (Fisher's exact test), Q value = 0.053
Table S233. Gene #56: 'amp_xp11.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| AMP PEAK 59(XP11.21) MUTATED | 3 | 5 | 0 |
| AMP PEAK 59(XP11.21) WILD-TYPE | 161 | 121 | 178 |
Figure S233. Get High-res Image Gene #56: 'amp_xp11.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S234. Gene #57: 'amp_xq21.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 60(XQ21.2) MUTATED | 8 | 1 | 0 |
| AMP PEAK 60(XQ21.2) WILD-TYPE | 48 | 359 | 83 |
Figure S234. Get High-res Image Gene #57: 'amp_xq21.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00071 (Fisher's exact test), Q value = 0.0036
Table S235. Gene #58: 'amp_xq22.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 61(XQ22.3) MUTATED | 7 | 8 | 0 |
| AMP PEAK 61(XQ22.3) WILD-TYPE | 49 | 352 | 83 |
Figure S235. Get High-res Image Gene #58: 'amp_xq22.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S236. Gene #59: 'amp_xq23' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 62(XQ23) MUTATED | 7 | 2 | 0 |
| AMP PEAK 62(XQ23) WILD-TYPE | 49 | 358 | 83 |
Figure S236. Get High-res Image Gene #59: 'amp_xq23' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.05 (Fisher's exact test), Q value = 0.11
Table S237. Gene #59: 'amp_xq23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| AMP PEAK 62(XQ23) MUTATED | 1 | 6 | 0 | 0 | 2 |
| AMP PEAK 62(XQ23) WILD-TYPE | 103 | 128 | 86 | 95 | 76 |
Figure S237. Get High-res Image Gene #59: 'amp_xq23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00034
Table S238. Gene #60: 'amp_xq24' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 63(XQ24) MUTATED | 7 | 2 | 0 |
| AMP PEAK 63(XQ24) WILD-TYPE | 49 | 358 | 83 |
Figure S238. Get High-res Image Gene #60: 'amp_xq24' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S239. Gene #61: 'amp_xq24' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 64(XQ24) MUTATED | 7 | 2 | 0 |
| AMP PEAK 64(XQ24) WILD-TYPE | 49 | 358 | 83 |
Figure S239. Get High-res Image Gene #61: 'amp_xq24' versus Molecular Subtype #1: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S240. Gene #62: 'amp_xq28' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| AMP PEAK 65(XQ28) MUTATED | 7 | 3 | 0 |
| AMP PEAK 65(XQ28) WILD-TYPE | 49 | 357 | 83 |
Figure S240. Get High-res Image Gene #62: 'amp_xq28' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00148 (Fisher's exact test), Q value = 0.0067
Table S241. Gene #63: 'del_1q24.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 1(1Q24.2) MUTATED | 3 | 0 | 0 |
| DEL PEAK 1(1Q24.2) WILD-TYPE | 53 | 360 | 83 |
Figure S241. Get High-res Image Gene #63: 'del_1q24.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0279 (Fisher's exact test), Q value = 0.073
Table S242. Gene #63: 'del_1q24.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 1(1Q24.2) MUTATED | 0 | 3 | 0 |
| DEL PEAK 1(1Q24.2) WILD-TYPE | 181 | 148 | 166 |
Figure S242. Get High-res Image Gene #63: 'del_1q24.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0168 (Fisher's exact test), Q value = 0.049
Table S243. Gene #63: 'del_1q24.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 1(1Q24.2) MUTATED | 0 | 3 | 0 |
| DEL PEAK 1(1Q24.2) WILD-TYPE | 178 | 125 | 192 |
Figure S243. Get High-res Image Gene #63: 'del_1q24.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0156 (Fisher's exact test), Q value = 0.047
Table S244. Gene #64: 'del_1q42.13' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 2(1Q42.13) MUTATED | 3 | 2 | 0 |
| DEL PEAK 2(1Q42.13) WILD-TYPE | 53 | 358 | 83 |
Figure S244. Get High-res Image Gene #64: 'del_1q42.13' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0479 (Fisher's exact test), Q value = 0.11
Table S245. Gene #64: 'del_1q42.13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 2(1Q42.13) MUTATED | 0 | 4 | 1 | 0 |
| DEL PEAK 2(1Q42.13) WILD-TYPE | 168 | 151 | 57 | 116 |
Figure S245. Get High-res Image Gene #64: 'del_1q42.13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0412 (Fisher's exact test), Q value = 0.1
Table S246. Gene #64: 'del_1q42.13' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 2(1Q42.13) MUTATED | 1 | 4 | 0 |
| DEL PEAK 2(1Q42.13) WILD-TYPE | 180 | 147 | 166 |
Figure S246. Get High-res Image Gene #64: 'del_1q42.13' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S247. Gene #65: 'del_2p23.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 3(2P23.1) MUTATED | 9 | 1 | 2 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 47 | 359 | 81 |
Figure S247. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00024
Table S248. Gene #65: 'del_2p23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 3(2P23.1) MUTATED | 0 | 11 | 1 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 276 | 143 | 68 |
Figure S248. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00024
Table S249. Gene #65: 'del_2p23.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 3(2P23.1) MUTATED | 0 | 12 | 0 | 0 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 168 | 143 | 58 | 116 |
Figure S249. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S250. Gene #65: 'del_2p23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 3(2P23.1) MUTATED | 0 | 11 | 1 | 0 | 0 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 104 | 123 | 85 | 95 | 78 |
Figure S250. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S251. Gene #65: 'del_2p23.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 3(2P23.1) MUTATED | 0 | 12 | 0 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 181 | 139 | 166 |
Figure S251. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S252. Gene #65: 'del_2p23.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 3(2P23.1) MUTATED | 0 | 11 | 1 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 178 | 117 | 191 |
Figure S252. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-04 (Fisher's exact test), Q value = 0.0014
Table S253. Gene #65: 'del_2p23.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 3(2P23.1) MUTATED | 1 | 8 | 0 |
| DEL PEAK 3(2P23.1) WILD-TYPE | 163 | 118 | 178 |
Figure S253. Get High-res Image Gene #65: 'del_2p23.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S254. Gene #66: 'del_2q22.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 4(2Q22.1) MUTATED | 10 | 0 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 46 | 360 | 83 |
Figure S254. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S255. Gene #66: 'del_2q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 4(2Q22.1) MUTATED | 0 | 10 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 276 | 144 | 69 |
Figure S255. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00073
Table S256. Gene #66: 'del_2q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 4(2Q22.1) MUTATED | 0 | 10 | 0 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 168 | 145 | 58 | 116 |
Figure S256. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00034
Table S257. Gene #66: 'del_2q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 4(2Q22.1) MUTATED | 0 | 10 | 0 | 0 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 104 | 124 | 86 | 95 | 78 |
Figure S257. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S258. Gene #66: 'del_2q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 4(2Q22.1) MUTATED | 0 | 10 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 181 | 141 | 166 |
Figure S258. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S259. Gene #66: 'del_2q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 4(2Q22.1) MUTATED | 0 | 10 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 178 | 118 | 192 |
Figure S259. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00057 (Fisher's exact test), Q value = 0.0031
Table S260. Gene #66: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 4(2Q22.1) MUTATED | 1 | 7 | 0 |
| DEL PEAK 4(2Q22.1) WILD-TYPE | 163 | 119 | 178 |
Figure S260. Get High-res Image Gene #66: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S261. Gene #67: 'del_2q37.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 5(2Q37.3) MUTATED | 11 | 2 | 0 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 45 | 358 | 83 |
Figure S261. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S262. Gene #67: 'del_2q37.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 5(2Q37.3) MUTATED | 0 | 12 | 1 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 276 | 142 | 68 |
Figure S262. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
Table S263. Gene #67: 'del_2q37.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 5(2Q37.3) MUTATED | 0 | 12 | 0 | 1 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 168 | 143 | 58 | 115 |
Figure S263. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S264. Gene #67: 'del_2q37.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 5(2Q37.3) MUTATED | 0 | 12 | 1 | 0 | 0 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 104 | 122 | 85 | 95 | 78 |
Figure S264. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S265. Gene #67: 'del_2q37.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 5(2Q37.3) MUTATED | 1 | 12 | 0 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 180 | 139 | 166 |
Figure S265. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S266. Gene #67: 'del_2q37.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 5(2Q37.3) MUTATED | 0 | 12 | 1 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 178 | 116 | 191 |
Figure S266. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00032 (Fisher's exact test), Q value = 0.0021
Table S267. Gene #67: 'del_2q37.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 5(2Q37.3) MUTATED | 1 | 9 | 1 |
| DEL PEAK 5(2Q37.3) WILD-TYPE | 163 | 117 | 177 |
Figure S267. Get High-res Image Gene #67: 'del_2q37.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0151 (Fisher's exact test), Q value = 0.045
Table S268. Gene #68: 'del_4q34.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 7(4Q34.3) MUTATED | 3 | 2 | 0 |
| DEL PEAK 7(4Q34.3) WILD-TYPE | 53 | 358 | 83 |
Figure S268. Get High-res Image Gene #68: 'del_4q34.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00024
Table S269. Gene #70: 'del_6q22.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 11(6Q22.31) MUTATED | 6 | 1 | 0 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 50 | 359 | 83 |
Figure S269. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00218 (Fisher's exact test), Q value = 0.0092
Table S270. Gene #70: 'del_6q22.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 11(6Q22.31) MUTATED | 0 | 6 | 1 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 276 | 148 | 68 |
Figure S270. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0319 (Fisher's exact test), Q value = 0.082
Table S271. Gene #70: 'del_6q22.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 11(6Q22.31) MUTATED | 1 | 6 | 0 | 0 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 167 | 149 | 58 | 116 |
Figure S271. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0184 (Fisher's exact test), Q value = 0.053
Table S272. Gene #70: 'del_6q22.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 11(6Q22.31) MUTATED | 1 | 6 | 0 | 0 | 0 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 103 | 128 | 86 | 95 | 78 |
Figure S272. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00495 (Fisher's exact test), Q value = 0.018
Table S273. Gene #70: 'del_6q22.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 11(6Q22.31) MUTATED | 1 | 6 | 0 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 180 | 145 | 166 |
Figure S273. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00074 (Fisher's exact test), Q value = 0.0037
Table S274. Gene #70: 'del_6q22.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 11(6Q22.31) MUTATED | 1 | 6 | 0 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 177 | 122 | 192 |
Figure S274. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0104 (Fisher's exact test), Q value = 0.033
Table S275. Gene #70: 'del_6q22.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 11(6Q22.31) MUTATED | 2 | 5 | 0 |
| DEL PEAK 11(6Q22.31) WILD-TYPE | 162 | 121 | 178 |
Figure S275. Get High-res Image Gene #70: 'del_6q22.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
Table S276. Gene #72: 'del_8p23.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 14(8P23.2) MUTATED | 4 | 0 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 52 | 360 | 83 |
Figure S276. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0184 (Fisher's exact test), Q value = 0.053
Table S277. Gene #72: 'del_8p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 14(8P23.2) MUTATED | 0 | 4 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 276 | 150 | 69 |
Figure S277. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0354 (Fisher's exact test), Q value = 0.088
Table S278. Gene #72: 'del_8p23.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 14(8P23.2) MUTATED | 0 | 4 | 0 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 168 | 151 | 58 | 116 |
Figure S278. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0468 (Fisher's exact test), Q value = 0.11
Table S279. Gene #72: 'del_8p23.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 14(8P23.2) MUTATED | 0 | 4 | 0 | 0 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 104 | 130 | 86 | 95 | 78 |
Figure S279. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00811 (Fisher's exact test), Q value = 0.028
Table S280. Gene #72: 'del_8p23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 14(8P23.2) MUTATED | 0 | 4 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 181 | 147 | 166 |
Figure S280. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00428 (Fisher's exact test), Q value = 0.016
Table S281. Gene #72: 'del_8p23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 14(8P23.2) MUTATED | 0 | 4 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 178 | 124 | 192 |
Figure S281. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0196 (Fisher's exact test), Q value = 0.054
Table S282. Gene #72: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 14(8P23.2) MUTATED | 0 | 3 | 0 |
| DEL PEAK 14(8P23.2) WILD-TYPE | 164 | 123 | 178 |
Figure S282. Get High-res Image Gene #72: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.0015
Table S283. Gene #73: 'del_8p22' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 15(8P22) MUTATED | 4 | 0 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 52 | 360 | 83 |
Figure S283. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0186 (Fisher's exact test), Q value = 0.053
Table S284. Gene #73: 'del_8p22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 15(8P22) MUTATED | 0 | 4 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 276 | 150 | 69 |
Figure S284. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0359 (Fisher's exact test), Q value = 0.089
Table S285. Gene #73: 'del_8p22' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 15(8P22) MUTATED | 0 | 4 | 0 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 168 | 151 | 58 | 116 |
Figure S285. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0472 (Fisher's exact test), Q value = 0.11
Table S286. Gene #73: 'del_8p22' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 15(8P22) MUTATED | 0 | 4 | 0 | 0 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 104 | 130 | 86 | 95 | 78 |
Figure S286. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00782 (Fisher's exact test), Q value = 0.027
Table S287. Gene #73: 'del_8p22' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 15(8P22) MUTATED | 0 | 4 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 181 | 147 | 166 |
Figure S287. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00431 (Fisher's exact test), Q value = 0.016
Table S288. Gene #73: 'del_8p22' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 15(8P22) MUTATED | 0 | 4 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 178 | 124 | 192 |
Figure S288. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0191 (Fisher's exact test), Q value = 0.053
Table S289. Gene #73: 'del_8p22' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 15(8P22) MUTATED | 0 | 3 | 0 |
| DEL PEAK 15(8P22) WILD-TYPE | 164 | 123 | 178 |
Figure S289. Get High-res Image Gene #73: 'del_8p22' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00016 (Fisher's exact test), Q value = 0.0012
Table S290. Gene #74: 'del_8p12' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 16(8P12) MUTATED | 4 | 0 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 52 | 360 | 83 |
Figure S290. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.018 (Fisher's exact test), Q value = 0.052
Table S291. Gene #74: 'del_8p12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 16(8P12) MUTATED | 0 | 4 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 276 | 150 | 69 |
Figure S291. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0355 (Fisher's exact test), Q value = 0.088
Table S292. Gene #74: 'del_8p12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 16(8P12) MUTATED | 0 | 4 | 0 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 168 | 151 | 58 | 116 |
Figure S292. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0472 (Fisher's exact test), Q value = 0.11
Table S293. Gene #74: 'del_8p12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 16(8P12) MUTATED | 0 | 4 | 0 | 0 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 104 | 130 | 86 | 95 | 78 |
Figure S293. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00856 (Fisher's exact test), Q value = 0.029
Table S294. Gene #74: 'del_8p12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 16(8P12) MUTATED | 0 | 4 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 181 | 147 | 166 |
Figure S294. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00447 (Fisher's exact test), Q value = 0.017
Table S295. Gene #74: 'del_8p12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 16(8P12) MUTATED | 0 | 4 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 178 | 124 | 192 |
Figure S295. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0189 (Fisher's exact test), Q value = 0.053
Table S296. Gene #74: 'del_8p12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 16(8P12) MUTATED | 0 | 3 | 0 |
| DEL PEAK 16(8P12) WILD-TYPE | 164 | 123 | 178 |
Figure S296. Get High-res Image Gene #74: 'del_8p12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5e-04 (Fisher's exact test), Q value = 0.0028
Table S297. Gene #75: 'del_8q24.22' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 17(8Q24.22) MUTATED | 5 | 2 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 51 | 358 | 83 |
Figure S297. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00037 (Fisher's exact test), Q value = 0.0023
Table S298. Gene #75: 'del_8q24.22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 7 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 276 | 147 | 69 |
Figure S298. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00155 (Fisher's exact test), Q value = 0.0069
Table S299. Gene #75: 'del_8q24.22' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 7 | 0 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 168 | 148 | 58 | 116 |
Figure S299. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00096 (Fisher's exact test), Q value = 0.0046
Table S300. Gene #75: 'del_8q24.22' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 7 | 0 | 0 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 104 | 127 | 86 | 95 | 78 |
Figure S300. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.0014
Table S301. Gene #75: 'del_8q24.22' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 7 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 181 | 144 | 166 |
Figure S301. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00073
Table S302. Gene #75: 'del_8q24.22' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 7 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 178 | 121 | 192 |
Figure S302. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00396 (Fisher's exact test), Q value = 0.015
Table S303. Gene #75: 'del_8q24.22' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 6 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 159 | 158 | 145 |
Figure S303. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00046 (Fisher's exact test), Q value = 0.0026
Table S304. Gene #75: 'del_8q24.22' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 17(8Q24.22) MUTATED | 0 | 6 | 0 |
| DEL PEAK 17(8Q24.22) WILD-TYPE | 164 | 120 | 178 |
Figure S304. Get High-res Image Gene #75: 'del_8q24.22' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S305. Gene #76: 'del_9p21.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 18(9P21.3) MUTATED | 16 | 2 | 2 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 40 | 358 | 81 |
Figure S305. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00861 (Fisher's exact test), Q value = 0.029
Table S306. Gene #76: 'del_9p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 18(9P21.3) MUTATED | 5 | 12 | 3 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 271 | 142 | 66 |
Figure S306. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0254 (Fisher's exact test), Q value = 0.067
Table S307. Gene #76: 'del_9p21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 18(9P21.3) MUTATED | 3 | 12 | 3 | 2 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 165 | 143 | 55 | 114 |
Figure S307. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0249 (Fisher's exact test), Q value = 0.066
Table S308. Gene #76: 'del_9p21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 18(9P21.3) MUTATED | 4 | 12 | 1 | 2 | 1 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 100 | 122 | 85 | 93 | 77 |
Figure S308. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.0025
Table S309. Gene #76: 'del_9p21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 18(9P21.3) MUTATED | 9 | 11 | 0 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 172 | 140 | 166 |
Figure S309. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00044 (Fisher's exact test), Q value = 0.0025
Table S310. Gene #76: 'del_9p21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 18(9P21.3) MUTATED | 8 | 11 | 1 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 170 | 117 | 191 |
Figure S310. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.0013
Table S311. Gene #76: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 18(9P21.3) MUTATED | 8 | 10 | 0 |
| DEL PEAK 18(9P21.3) WILD-TYPE | 156 | 116 | 178 |
Figure S311. Get High-res Image Gene #76: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S312. Gene #77: 'del_9q22.33' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 19(9Q22.33) MUTATED | 21 | 3 | 3 |
| DEL PEAK 19(9Q22.33) WILD-TYPE | 35 | 357 | 80 |
Figure S312. Get High-res Image Gene #77: 'del_9q22.33' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0282 (Fisher's exact test), Q value = 0.074
Table S313. Gene #77: 'del_9q22.33' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 19(9Q22.33) MUTATED | 8 | 13 | 1 | 3 | 2 |
| DEL PEAK 19(9Q22.33) WILD-TYPE | 96 | 121 | 85 | 92 | 76 |
Figure S313. Get High-res Image Gene #77: 'del_9q22.33' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00528 (Fisher's exact test), Q value = 0.019
Table S314. Gene #77: 'del_9q22.33' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 19(9Q22.33) MUTATED | 13 | 12 | 2 |
| DEL PEAK 19(9Q22.33) WILD-TYPE | 168 | 139 | 164 |
Figure S314. Get High-res Image Gene #77: 'del_9q22.33' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00365 (Fisher's exact test), Q value = 0.014
Table S315. Gene #77: 'del_9q22.33' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 19(9Q22.33) MUTATED | 12 | 12 | 3 |
| DEL PEAK 19(9Q22.33) WILD-TYPE | 166 | 116 | 189 |
Figure S315. Get High-res Image Gene #77: 'del_9q22.33' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00235 (Fisher's exact test), Q value = 0.0097
Table S316. Gene #77: 'del_9q22.33' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 19(9Q22.33) MUTATED | 12 | 11 | 2 |
| DEL PEAK 19(9Q22.33) WILD-TYPE | 152 | 115 | 176 |
Figure S316. Get High-res Image Gene #77: 'del_9q22.33' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S317. Gene #78: 'del_10p12.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 20(10P12.31) MUTATED | 6 | 0 | 1 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 50 | 360 | 82 |
Figure S317. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0109 (Fisher's exact test), Q value = 0.034
Table S318. Gene #78: 'del_10p12.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 20(10P12.31) MUTATED | 1 | 6 | 0 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 275 | 148 | 69 |
Figure S318. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.021 (Fisher's exact test), Q value = 0.058
Table S319. Gene #78: 'del_10p12.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 20(10P12.31) MUTATED | 0 | 6 | 0 | 1 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 168 | 149 | 58 | 115 |
Figure S319. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.016 (Fisher's exact test), Q value = 0.047
Table S320. Gene #78: 'del_10p12.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 20(10P12.31) MUTATED | 0 | 6 | 0 | 1 | 0 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 104 | 128 | 86 | 94 | 78 |
Figure S320. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00484 (Fisher's exact test), Q value = 0.018
Table S321. Gene #78: 'del_10p12.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 20(10P12.31) MUTATED | 1 | 6 | 0 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 180 | 145 | 166 |
Figure S321. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00083 (Fisher's exact test), Q value = 0.0041
Table S322. Gene #78: 'del_10p12.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 20(10P12.31) MUTATED | 1 | 6 | 0 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 177 | 122 | 192 |
Figure S322. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00999 (Fisher's exact test), Q value = 0.033
Table S323. Gene #78: 'del_10p12.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 20(10P12.31) MUTATED | 2 | 5 | 0 |
| DEL PEAK 20(10P12.31) WILD-TYPE | 162 | 121 | 178 |
Figure S323. Get High-res Image Gene #78: 'del_10p12.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0017 (Fisher's exact test), Q value = 0.0074
Table S324. Gene #79: 'del_10q21.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 21(10Q21.2) MUTATED | 6 | 5 | 1 |
| DEL PEAK 21(10Q21.2) WILD-TYPE | 50 | 355 | 82 |
Figure S324. Get High-res Image Gene #79: 'del_10q21.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0191 (Fisher's exact test), Q value = 0.053
Table S325. Gene #79: 'del_10q21.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 21(10Q21.2) MUTATED | 0 | 7 | 2 | 3 |
| DEL PEAK 21(10Q21.2) WILD-TYPE | 168 | 148 | 56 | 113 |
Figure S325. Get High-res Image Gene #79: 'del_10q21.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0474 (Fisher's exact test), Q value = 0.11
Table S326. Gene #79: 'del_10q21.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 21(10Q21.2) MUTATED | 5 | 6 | 1 |
| DEL PEAK 21(10Q21.2) WILD-TYPE | 159 | 120 | 177 |
Figure S326. Get High-res Image Gene #79: 'del_10q21.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00014 (Fisher's exact test), Q value = 0.0011
Table S327. Gene #80: 'del_10q23.31' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 22(10Q23.31) MUTATED | 7 | 4 | 1 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 49 | 356 | 82 |
Figure S327. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00445 (Fisher's exact test), Q value = 0.016
Table S328. Gene #80: 'del_10q23.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 22(10Q23.31) MUTATED | 2 | 9 | 1 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 274 | 145 | 68 |
Figure S328. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0157 (Fisher's exact test), Q value = 0.047
Table S329. Gene #80: 'del_10q23.31' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 64 | 64 | 42 | 49 |
| DEL PEAK 22(10Q23.31) MUTATED | 5 | 0 | 1 | 0 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 59 | 64 | 41 | 49 |
Figure S329. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.00086 (Fisher's exact test), Q value = 0.0042
Table S330. Gene #80: 'del_10q23.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 22(10Q23.31) MUTATED | 0 | 10 | 0 | 2 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 168 | 145 | 58 | 114 |
Figure S330. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00449 (Fisher's exact test), Q value = 0.017
Table S331. Gene #80: 'del_10q23.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 22(10Q23.31) MUTATED | 0 | 9 | 1 | 2 | 0 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 104 | 125 | 85 | 93 | 78 |
Figure S331. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0043 (Fisher's exact test), Q value = 0.016
Table S332. Gene #80: 'del_10q23.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 22(10Q23.31) MUTATED | 2 | 9 | 1 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 179 | 142 | 165 |
Figure S332. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00061 (Fisher's exact test), Q value = 0.0032
Table S333. Gene #80: 'del_10q23.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 22(10Q23.31) MUTATED | 2 | 9 | 1 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 176 | 119 | 191 |
Figure S333. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00789 (Fisher's exact test), Q value = 0.027
Table S334. Gene #80: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 22(10Q23.31) MUTATED | 3 | 8 | 1 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 161 | 118 | 177 |
Figure S334. Get High-res Image Gene #80: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S335. Gene #81: 'del_11p15.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 23(11P15.1) MUTATED | 6 | 0 | 1 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 50 | 360 | 82 |
Figure S335. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0113 (Fisher's exact test), Q value = 0.035
Table S336. Gene #81: 'del_11p15.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 23(11P15.1) MUTATED | 1 | 6 | 0 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 275 | 148 | 69 |
Figure S336. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00748 (Fisher's exact test), Q value = 0.026
Table S337. Gene #81: 'del_11p15.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 23(11P15.1) MUTATED | 0 | 6 | 1 | 0 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 168 | 149 | 57 | 116 |
Figure S337. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0191 (Fisher's exact test), Q value = 0.053
Table S338. Gene #81: 'del_11p15.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 23(11P15.1) MUTATED | 1 | 6 | 0 | 0 | 0 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 103 | 128 | 86 | 95 | 78 |
Figure S338. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0054 (Fisher's exact test), Q value = 0.019
Table S339. Gene #81: 'del_11p15.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 23(11P15.1) MUTATED | 1 | 6 | 0 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 180 | 145 | 166 |
Figure S339. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00068 (Fisher's exact test), Q value = 0.0035
Table S340. Gene #81: 'del_11p15.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 23(11P15.1) MUTATED | 1 | 6 | 0 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 177 | 122 | 192 |
Figure S340. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0104 (Fisher's exact test), Q value = 0.033
Table S341. Gene #81: 'del_11p15.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 23(11P15.1) MUTATED | 2 | 5 | 0 |
| DEL PEAK 23(11P15.1) WILD-TYPE | 162 | 121 | 178 |
Figure S341. Get High-res Image Gene #81: 'del_11p15.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00039 (Fisher's exact test), Q value = 0.0023
Table S342. Gene #82: 'del_13q12.13' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 24(13Q12.13) MUTATED | 8 | 7 | 3 |
| DEL PEAK 24(13Q12.13) WILD-TYPE | 48 | 353 | 80 |
Figure S342. Get High-res Image Gene #82: 'del_13q12.13' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00119 (Fisher's exact test), Q value = 0.0055
Table S343. Gene #82: 'del_13q12.13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 24(13Q12.13) MUTATED | 3 | 12 | 3 |
| DEL PEAK 24(13Q12.13) WILD-TYPE | 273 | 142 | 66 |
Figure S343. Get High-res Image Gene #82: 'del_13q12.13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0182 (Fisher's exact test), Q value = 0.053
Table S344. Gene #82: 'del_13q12.13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 24(13Q12.13) MUTATED | 2 | 11 | 3 | 2 |
| DEL PEAK 24(13Q12.13) WILD-TYPE | 166 | 144 | 55 | 114 |
Figure S344. Get High-res Image Gene #82: 'del_13q12.13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0367 (Fisher's exact test), Q value = 0.091
Table S345. Gene #82: 'del_13q12.13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 24(13Q12.13) MUTATED | 2 | 10 | 4 | 2 | 0 |
| DEL PEAK 24(13Q12.13) WILD-TYPE | 102 | 124 | 82 | 93 | 78 |
Figure S345. Get High-res Image Gene #82: 'del_13q12.13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0211 (Fisher's exact test), Q value = 0.058
Table S346. Gene #82: 'del_13q12.13' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 24(13Q12.13) MUTATED | 4 | 10 | 4 |
| DEL PEAK 24(13Q12.13) WILD-TYPE | 174 | 118 | 188 |
Figure S346. Get High-res Image Gene #82: 'del_13q12.13' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0346 (Fisher's exact test), Q value = 0.087
Table S347. Gene #82: 'del_13q12.13' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 24(13Q12.13) MUTATED | 4 | 10 | 4 |
| DEL PEAK 24(13Q12.13) WILD-TYPE | 160 | 116 | 174 |
Figure S347. Get High-res Image Gene #82: 'del_13q12.13' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00232 (Fisher's exact test), Q value = 0.0097
Table S348. Gene #83: 'del_13q22.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 25(13Q22.1) MUTATED | 7 | 8 | 4 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 49 | 352 | 79 |
Figure S348. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0381 (Fisher's exact test), Q value = 0.093
Table S349. Gene #83: 'del_13q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 25(13Q22.1) MUTATED | 6 | 11 | 2 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 270 | 143 | 67 |
Figure S349. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0369 (Fisher's exact test), Q value = 0.091
Table S350. Gene #83: 'del_13q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 64 | 64 | 42 | 49 |
| DEL PEAK 25(13Q22.1) MUTATED | 1 | 2 | 6 | 2 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 63 | 62 | 36 | 47 |
Figure S350. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.00121 (Fisher's exact test), Q value = 0.0056
Table S351. Gene #83: 'del_13q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 25(13Q22.1) MUTATED | 0 | 11 | 2 | 6 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 168 | 144 | 56 | 110 |
Figure S351. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00084 (Fisher's exact test), Q value = 0.0041
Table S352. Gene #83: 'del_13q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 25(13Q22.1) MUTATED | 0 | 11 | 2 | 6 | 0 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 104 | 123 | 84 | 89 | 78 |
Figure S352. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00378 (Fisher's exact test), Q value = 0.015
Table S353. Gene #83: 'del_13q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 25(13Q22.1) MUTATED | 1 | 11 | 7 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 180 | 140 | 159 |
Figure S353. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00095 (Fisher's exact test), Q value = 0.0046
Table S354. Gene #83: 'del_13q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 25(13Q22.1) MUTATED | 1 | 11 | 7 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 177 | 117 | 185 |
Figure S354. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0135 (Fisher's exact test), Q value = 0.041
Table S355. Gene #83: 'del_13q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| DEL PEAK 25(13Q22.1) MUTATED | 1 | 8 | 9 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 158 | 156 | 136 |
Figure S355. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00365 (Fisher's exact test), Q value = 0.014
Table S356. Gene #83: 'del_13q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 25(13Q22.1) MUTATED | 1 | 10 | 7 |
| DEL PEAK 25(13Q22.1) WILD-TYPE | 163 | 116 | 171 |
Figure S356. Get High-res Image Gene #83: 'del_13q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00068 (Fisher's exact test), Q value = 0.0035
Table S357. Gene #84: 'del_15q25.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 27(15Q25.3) MUTATED | 5 | 2 | 2 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 51 | 358 | 81 |
Figure S357. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0015 (Fisher's exact test), Q value = 0.0067
Table S358. Gene #84: 'del_15q25.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 27(15Q25.3) MUTATED | 1 | 8 | 0 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 275 | 146 | 69 |
Figure S358. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00428 (Fisher's exact test), Q value = 0.016
Table S359. Gene #84: 'del_15q25.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 27(15Q25.3) MUTATED | 1 | 8 | 0 | 0 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 167 | 147 | 58 | 116 |
Figure S359. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00176 (Fisher's exact test), Q value = 0.0076
Table S360. Gene #84: 'del_15q25.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 27(15Q25.3) MUTATED | 1 | 8 | 0 | 0 | 0 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 103 | 126 | 86 | 95 | 78 |
Figure S360. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00048 (Fisher's exact test), Q value = 0.0027
Table S361. Gene #84: 'del_15q25.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 27(15Q25.3) MUTATED | 0 | 8 | 1 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 181 | 143 | 165 |
Figure S361. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 0.0012
Table S362. Gene #84: 'del_15q25.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 27(15Q25.3) MUTATED | 0 | 8 | 1 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 178 | 120 | 191 |
Figure S362. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0115 (Fisher's exact test), Q value = 0.036
Table S363. Gene #84: 'del_15q25.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 27(15Q25.3) MUTATED | 1 | 6 | 1 |
| DEL PEAK 27(15Q25.3) WILD-TYPE | 163 | 120 | 177 |
Figure S363. Get High-res Image Gene #84: 'del_15q25.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0221 (Fisher's exact test), Q value = 0.06
Table S364. Gene #85: 'del_16q23.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 29(16Q23.3) MUTATED | 3 | 2 | 1 |
| DEL PEAK 29(16Q23.3) WILD-TYPE | 53 | 358 | 82 |
Figure S364. Get High-res Image Gene #85: 'del_16q23.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0125 (Fisher's exact test), Q value = 0.038
Table S365. Gene #86: 'del_17p13.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 30(17P13.1) MUTATED | 4 | 3 | 1 |
| DEL PEAK 30(17P13.1) WILD-TYPE | 52 | 357 | 82 |
Figure S365. Get High-res Image Gene #86: 'del_17p13.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0019 (Fisher's exact test), Q value = 0.0081
Table S366. Gene #87: 'del_18q12.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 31(18Q12.3) MUTATED | 3 | 0 | 1 |
| DEL PEAK 31(18Q12.3) WILD-TYPE | 53 | 360 | 82 |
Figure S366. Get High-res Image Gene #87: 'del_18q12.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00021 (Fisher's exact test), Q value = 0.0015
Table S367. Gene #88: 'del_19p13.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 32(19P13.2) MUTATED | 5 | 1 | 1 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 51 | 359 | 82 |
Figure S367. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00036 (Fisher's exact test), Q value = 0.0022
Table S368. Gene #88: 'del_19p13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 32(19P13.2) MUTATED | 0 | 7 | 0 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 276 | 147 | 69 |
Figure S368. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00142 (Fisher's exact test), Q value = 0.0065
Table S369. Gene #88: 'del_19p13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 32(19P13.2) MUTATED | 0 | 7 | 0 | 0 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 168 | 148 | 58 | 116 |
Figure S369. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00099 (Fisher's exact test), Q value = 0.0047
Table S370. Gene #88: 'del_19p13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 32(19P13.2) MUTATED | 0 | 7 | 0 | 0 | 0 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 104 | 127 | 86 | 95 | 78 |
Figure S370. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-04 (Fisher's exact test), Q value = 0.0014
Table S371. Gene #88: 'del_19p13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 32(19P13.2) MUTATED | 0 | 7 | 0 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 181 | 144 | 166 |
Figure S371. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00091
Table S372. Gene #88: 'del_19p13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 32(19P13.2) MUTATED | 0 | 7 | 0 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 178 | 121 | 192 |
Figure S372. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00011 (Fisher's exact test), Q value = 0.00091
Table S373. Gene #88: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 32(19P13.2) MUTATED | 0 | 7 | 0 |
| DEL PEAK 32(19P13.2) WILD-TYPE | 164 | 119 | 178 |
Figure S373. Get High-res Image Gene #88: 'del_19p13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0128 (Fisher's exact test), Q value = 0.039
Table S374. Gene #89: 'del_19p13.12' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 33(19P13.12) MUTATED | 4 | 3 | 1 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 52 | 357 | 82 |
Figure S374. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00442 (Fisher's exact test), Q value = 0.016
Table S375. Gene #89: 'del_19p13.12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 33(19P13.12) MUTATED | 1 | 7 | 0 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 275 | 147 | 69 |
Figure S375. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0113 (Fisher's exact test), Q value = 0.035
Table S376. Gene #89: 'del_19p13.12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 33(19P13.12) MUTATED | 1 | 7 | 0 | 0 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 167 | 148 | 58 | 116 |
Figure S376. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0054 (Fisher's exact test), Q value = 0.019
Table S377. Gene #89: 'del_19p13.12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 33(19P13.12) MUTATED | 1 | 7 | 0 | 0 | 0 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 103 | 127 | 86 | 95 | 78 |
Figure S377. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00112 (Fisher's exact test), Q value = 0.0052
Table S378. Gene #89: 'del_19p13.12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 33(19P13.12) MUTATED | 0 | 7 | 1 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 181 | 144 | 165 |
Figure S378. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00039 (Fisher's exact test), Q value = 0.0023
Table S379. Gene #89: 'del_19p13.12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 33(19P13.12) MUTATED | 0 | 7 | 1 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 178 | 121 | 191 |
Figure S379. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00058 (Fisher's exact test), Q value = 0.0031
Table S380. Gene #89: 'del_19p13.12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 33(19P13.12) MUTATED | 0 | 7 | 1 |
| DEL PEAK 33(19P13.12) WILD-TYPE | 164 | 119 | 177 |
Figure S380. Get High-res Image Gene #89: 'del_19p13.12' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 0.00097
Table S381. Gene #90: 'del_21q21.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 36(21Q21.1) MUTATED | 6 | 2 | 1 |
| DEL PEAK 36(21Q21.1) WILD-TYPE | 50 | 358 | 82 |
Figure S381. Get High-res Image Gene #90: 'del_21q21.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0237 (Fisher's exact test), Q value = 0.064
Table S382. Gene #90: 'del_21q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 36(21Q21.1) MUTATED | 5 | 4 | 0 |
| DEL PEAK 36(21Q21.1) WILD-TYPE | 173 | 124 | 192 |
Figure S382. Get High-res Image Gene #90: 'del_21q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0206 (Fisher's exact test), Q value = 0.057
Table S383. Gene #90: 'del_21q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 36(21Q21.1) MUTATED | 6 | 2 | 0 |
| DEL PEAK 36(21Q21.1) WILD-TYPE | 158 | 124 | 178 |
Figure S383. Get High-res Image Gene #90: 'del_21q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S384. Gene #91: 'del_22q12.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 37(22Q12.3) MUTATED | 13 | 0 | 77 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 43 | 360 | 6 |
Figure S384. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 0.00024
Table S385. Gene #91: 'del_22q12.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 37(22Q12.3) MUTATED | 37 | 47 | 6 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 239 | 107 | 63 |
Figure S385. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S386. Gene #91: 'del_22q12.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 37(22Q12.3) MUTATED | 8 | 47 | 8 | 27 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 160 | 108 | 50 | 89 |
Figure S386. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S387. Gene #91: 'del_22q12.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 37(22Q12.3) MUTATED | 9 | 42 | 13 | 24 | 2 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 95 | 92 | 73 | 71 | 76 |
Figure S387. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00061 (Fisher's exact test), Q value = 0.0032
Table S388. Gene #91: 'del_22q12.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 37(22Q12.3) MUTATED | 24 | 43 | 23 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 157 | 108 | 143 |
Figure S388. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00034
Table S389. Gene #91: 'del_22q12.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 37(22Q12.3) MUTATED | 22 | 40 | 28 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 156 | 88 | 164 |
Figure S389. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00021 (Fisher's exact test), Q value = 0.0015
Table S390. Gene #91: 'del_22q12.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| DEL PEAK 37(22Q12.3) MUTATED | 17 | 24 | 41 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 142 | 140 | 104 |
Figure S390. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00042 (Fisher's exact test), Q value = 0.0024
Table S391. Gene #91: 'del_22q12.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 37(22Q12.3) MUTATED | 22 | 37 | 23 |
| DEL PEAK 37(22Q12.3) WILD-TYPE | 142 | 89 | 155 |
Figure S391. Get High-res Image Gene #91: 'del_22q12.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S392. Gene #92: 'del_22q13.1' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 38(22Q13.1) MUTATED | 13 | 0 | 76 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 43 | 360 | 7 |
Figure S392. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S393. Gene #92: 'del_22q13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 38(22Q13.1) MUTATED | 36 | 47 | 6 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 240 | 107 | 63 |
Figure S393. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S394. Gene #92: 'del_22q13.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 38(22Q13.1) MUTATED | 8 | 47 | 8 | 26 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 160 | 108 | 50 | 90 |
Figure S394. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S395. Gene #92: 'del_22q13.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 38(22Q13.1) MUTATED | 9 | 42 | 13 | 23 | 2 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 95 | 92 | 73 | 72 | 76 |
Figure S395. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00037 (Fisher's exact test), Q value = 0.0023
Table S396. Gene #92: 'del_22q13.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 38(22Q13.1) MUTATED | 23 | 43 | 23 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 158 | 108 | 143 |
Figure S396. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00091
Table S397. Gene #92: 'del_22q13.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 38(22Q13.1) MUTATED | 21 | 40 | 28 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 157 | 88 | 164 |
Figure S397. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00022 (Fisher's exact test), Q value = 0.0015
Table S398. Gene #92: 'del_22q13.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| DEL PEAK 38(22Q13.1) MUTATED | 17 | 23 | 41 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 142 | 141 | 104 |
Figure S398. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 0.0016
Table S399. Gene #92: 'del_22q13.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 38(22Q13.1) MUTATED | 22 | 37 | 22 |
| DEL PEAK 38(22Q13.1) WILD-TYPE | 142 | 89 | 156 |
Figure S399. Get High-res Image Gene #92: 'del_22q13.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S400. Gene #93: 'del_22q13.2' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 39(22Q13.2) MUTATED | 13 | 0 | 76 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 43 | 360 | 7 |
Figure S400. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S401. Gene #93: 'del_22q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 39(22Q13.2) MUTATED | 36 | 47 | 6 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 240 | 107 | 63 |
Figure S401. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S402. Gene #93: 'del_22q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 39(22Q13.2) MUTATED | 8 | 47 | 8 | 26 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 160 | 108 | 50 | 90 |
Figure S402. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S403. Gene #93: 'del_22q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 39(22Q13.2) MUTATED | 9 | 42 | 13 | 23 | 2 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 95 | 92 | 73 | 72 | 76 |
Figure S403. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00039 (Fisher's exact test), Q value = 0.0023
Table S404. Gene #93: 'del_22q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 39(22Q13.2) MUTATED | 23 | 43 | 23 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 158 | 108 | 143 |
Figure S404. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
Table S405. Gene #93: 'del_22q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 39(22Q13.2) MUTATED | 21 | 40 | 28 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 157 | 88 | 164 |
Figure S405. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 0.00097
Table S406. Gene #93: 'del_22q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| DEL PEAK 39(22Q13.2) MUTATED | 17 | 23 | 41 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 142 | 141 | 104 |
Figure S406. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00029 (Fisher's exact test), Q value = 0.0019
Table S407. Gene #93: 'del_22q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 39(22Q13.2) MUTATED | 22 | 37 | 22 |
| DEL PEAK 39(22Q13.2) WILD-TYPE | 142 | 89 | 156 |
Figure S407. Get High-res Image Gene #93: 'del_22q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S408. Gene #94: 'del_22q13.32' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 40(22Q13.32) MUTATED | 13 | 1 | 76 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 43 | 359 | 7 |
Figure S408. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S409. Gene #94: 'del_22q13.32' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 40(22Q13.32) MUTATED | 36 | 48 | 6 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 240 | 106 | 63 |
Figure S409. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S410. Gene #94: 'del_22q13.32' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 168 | 155 | 58 | 116 |
| DEL PEAK 40(22Q13.32) MUTATED | 8 | 48 | 8 | 26 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 160 | 107 | 50 | 90 |
Figure S410. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
Table S411. Gene #94: 'del_22q13.32' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 104 | 134 | 86 | 95 | 78 |
| DEL PEAK 40(22Q13.32) MUTATED | 9 | 43 | 13 | 23 | 2 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 95 | 91 | 73 | 72 | 76 |
Figure S411. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00019 (Fisher's exact test), Q value = 0.0014
Table S412. Gene #94: 'del_22q13.32' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 181 | 151 | 166 |
| DEL PEAK 40(22Q13.32) MUTATED | 23 | 44 | 23 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 158 | 107 | 143 |
Figure S412. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00034
Table S413. Gene #94: 'del_22q13.32' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 178 | 128 | 192 |
| DEL PEAK 40(22Q13.32) MUTATED | 21 | 41 | 28 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 157 | 87 | 164 |
Figure S413. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00029 (Fisher's exact test), Q value = 0.0019
Table S414. Gene #94: 'del_22q13.32' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 159 | 164 | 145 |
| DEL PEAK 40(22Q13.32) MUTATED | 17 | 24 | 41 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 142 | 140 | 104 |
Figure S414. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00018 (Fisher's exact test), Q value = 0.0013
Table S415. Gene #94: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 164 | 126 | 178 |
| DEL PEAK 40(22Q13.32) MUTATED | 22 | 38 | 22 |
| DEL PEAK 40(22Q13.32) WILD-TYPE | 142 | 88 | 156 |
Figure S415. Get High-res Image Gene #94: 'del_22q13.32' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00967 (Fisher's exact test), Q value = 0.032
Table S416. Gene #95: 'del_xq23' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 41(XQ23) MUTATED | 3 | 1 | 0 |
| DEL PEAK 41(XQ23) WILD-TYPE | 53 | 359 | 83 |
Figure S416. Get High-res Image Gene #95: 'del_xq23' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0461 (Fisher's exact test), Q value = 0.11
Table S417. Gene #95: 'del_xq23' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 41(XQ23) MUTATED | 0 | 3 | 1 |
| DEL PEAK 41(XQ23) WILD-TYPE | 276 | 151 | 68 |
Figure S417. Get High-res Image Gene #95: 'del_xq23' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00957 (Fisher's exact test), Q value = 0.032
Table S418. Gene #96: 'del_xq22.3' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 56 | 360 | 83 |
| DEL PEAK 42(XQ22.3) MUTATED | 3 | 1 | 0 |
| DEL PEAK 42(XQ22.3) WILD-TYPE | 53 | 359 | 83 |
Figure S418. Get High-res Image Gene #96: 'del_xq22.3' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.045 (Fisher's exact test), Q value = 0.11
Table S419. Gene #96: 'del_xq22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 276 | 154 | 69 |
| DEL PEAK 42(XQ22.3) MUTATED | 0 | 3 | 1 |
| DEL PEAK 42(XQ22.3) WILD-TYPE | 276 | 151 | 68 |
Figure S419. Get High-res Image Gene #96: 'del_xq22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/19782153/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/20140899/THCA-TP.transferedmergedcluster.txt
-
Number of patients = 499
-
Number of significantly focal cnvs = 96
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.