[1] "ofn"        "-oTTHCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/20140899/THCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/19782153/transformed.cor.cli.txt"

nPatients in clinical file=503, in cluster file=499, common to both=499
[1] "Reduce the number of clustering variables from 107 to 96."
[1]  96 499
[1] "AMP PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE 
                             5                            494 
  AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE 
                             5                            494 
[1] "AMP PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE 
                            5                           494 
  AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE 
                            5                           494 
[1] "AMP PEAK  3(1P31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE 
                            5                           494 
  AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE 
                            5                           494 
[1] "AMP PEAK  4(1Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE 
                           29                           470 
  AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE 
                           29                           470 
[1] "AMP PEAK  5(1Q43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE 
                         29                         470 
  AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE 
                         29                         470 
[1] "AMP PEAK  6(2P16.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE 
                            3                           496 
  AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE 
                            3                           496 
[1] "AMP PEAK  8(2Q37.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE 
                            3                           496 
  AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE 
                            3                           496 
[1] "AMP PEAK  9(3P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE 
                            4                           495 
  AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE 
                            4                           495 
[1] "AMP PEAK 10(3P14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                            5                           494 
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                            5                           494 
[1] "AMP PEAK 11(4P16.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE 
                            7                           492 
  AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE 
                            7                           492 
[1] "AMP PEAK 12(4Q28.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE 
                            6                           493 
  AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE 
                            6                           493 
[1] "AMP PEAK 13(4Q31.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE 
                            10                            489 
  AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE 
                            10                            489 
[1] "AMP PEAK 14(4Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE 
                            7                           492 
  AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE 
                            7                           492 
[1] "AMP PEAK 15(5P14.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE 
                           23                           476 
  AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE 
                           23                           476 
[1] "AMP PEAK 16(5Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE 
                           23                           476 
  AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE 
                           23                           476 
[1] "AMP PEAK 17(5Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE 
                           20                           479 
  AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE 
                           20                           479 
[1] "AMP PEAK 18(5Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE 
                           21                           478 
  AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE 
                           21                           478 
[1] "AMP PEAK 19(5Q35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE 
                           20                           479 
  AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE 
                           20                           479 
[1] "AMP PEAK 20(6P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE 
                            3                           496 
  AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE 
                            3                           496 
[1] "AMP PEAK 21(6P22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE 
                            4                           495 
  AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE 
                            4                           495 
[1] "AMP PEAK 22(6P21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE 
                             3                            496 
  AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE 
                             3                            496 
[1] "AMP PEAK 23(6P21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE 
                            4                           495 
  AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE 
                            4                           495 
[1] "AMP PEAK 24(6P12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE 
                            3                           496 
  AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE 
                            3                           496 
[1] "AMP PEAK 25(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE 
                          3                         496 
  AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE 
                          3                         496 
[1] "AMP PEAK 26(6Q27) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE 
                          4                         495 
  AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE 
                          4                         495 
[1] "AMP PEAK 27(7Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE 
                            20                            479 
  AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE 
                            20                            479 
[1] "AMP PEAK 28(7Q21.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE 
                            21                            478 
  AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE 
                            21                            478 
[1] "AMP PEAK 29(7Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE 
                           22                           477 
  AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE 
                           22                           477 
[1] "AMP PEAK 30(7Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE 
                         22                         477 
  AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE 
                         22                         477 
[1] "AMP PEAK 31(9Q22.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE 
                             6                            493 
  AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE 
                             6                            493 
[1] "AMP PEAK 32(9Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE 
                            6                           493 
  AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE 
                            6                           493 
[1] "AMP PEAK 33(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE 
                            7                           492 
  AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE 
                            7                           492 
[1] "AMP PEAK 34(10Q24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE 
                             3                            496 
  AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE 
                             3                            496 
[1] "AMP PEAK 35(10Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE 
                             4                            495 
  AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE 
                             4                            495 
[1] "AMP PEAK 36(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE 
                           8                          491 
  AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE 
                           8                          491 
[1] "AMP PEAK 37(12P11.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE 
                            16                            483 
  AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE 
                            16                            483 
[1] "AMP PEAK 38(12Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE 
                             17                             482 
  AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE 
                             17                             482 
[1] "AMP PEAK 39(12Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE 
                            17                            482 
  AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE 
                            17                            482 
[1] "AMP PEAK 40(13Q14.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE 
                             6                            493 
  AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE 
                             6                            493 
[1] "AMP PEAK 41(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE 
                           7                          492 
  AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE 
                           7                          492 
[1] "AMP PEAK 42(14Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE 
                          13                          486 
  AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE 
                          13                          486 
[1] "AMP PEAK 43(14Q32.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE 
                             13                             486 
  AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE 
                             13                             486 
[1] "AMP PEAK 46(18Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE 
                             7                            492 
  AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE 
                             7                            492 
[1] "AMP PEAK 47(18Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE 
                             7                            492 
  AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE 
                             7                            492 
[1] "AMP PEAK 48(18Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE 
                             8                            491 
  AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE 
                             8                            491 
[1] "AMP PEAK 49(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE 
                             8                            491 
  AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE 
                             8                            491 
[1] "AMP PEAK 50(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE 
                          14                          485 
  AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE 
                          14                          485 
[1] "AMP PEAK 51(20Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE 
                             14                             485 
  AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE 
                             14                             485 
[1] "AMP PEAK 52(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE 
                            14                            485 
  AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE 
                            14                            485 
[1] "AMP PEAK 53(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE 
                            13                            486 
  AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE 
                            13                            486 
[1] "AMP PEAK 54(21Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE 
                             6                            493 
  AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE 
                             6                            493 
[1] "AMP PEAK 55(22Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE 
                              7                             492 
  AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE 
                              7                             492 
[1] "AMP PEAK 56(XP22.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE 
                            10                            489 
  AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE 
                            10                            489 
[1] "AMP PEAK 57(XP11.4) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE 
                            9                           490 
  AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE 
                            9                           490 
[1] "AMP PEAK 58(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE 
                             8                            491 
  AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE 
                             8                            491 
[1] "AMP PEAK 59(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE 
                             9                            490 
  AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE 
                             9                            490 
[1] "AMP PEAK 60(XQ21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE 
                            9                           490 
  AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE 
                            9                           490 
[1] "AMP PEAK 61(XQ22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE 
                           15                           484 
  AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE 
                           15                           484 
[1] "AMP PEAK 62(XQ23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE 
                          9                         490 
  AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE 
                          9                         490 
[1] "AMP PEAK 63(XQ24) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE 
                          9                         490 
  AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE 
                          9                         490 
[1] "AMP PEAK 64(XQ24) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE 
                          9                         490 
  AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE 
                          9                         490 
[1] "AMP PEAK 65(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE 
                         10                         489 
  AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE 
                         10                         489 
[1] "DEL PEAK  1(1Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            3                           496 
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            3                           496 
[1] "DEL PEAK  2(1Q42.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE 
                             5                            494 
  DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE 
                             5                            494 
[1] "DEL PEAK  3(2P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE 
                           12                           487 
  DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE 
                           12                           487 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           10                           489 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           10                           489 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           13                           486 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           13                           486 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                            5                           494 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                            5                           494 
[1] "DEL PEAK  8(5P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE 
                            4                           495 
  DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE 
                            4                           495 
[1] "DEL PEAK 11(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                             7                            492 
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                             7                            492 
[1] "DEL PEAK 13(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                          4                         495 
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                            4                           495 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                            4                           495 
[1] "DEL PEAK 15(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE 
                          4                         495 
  DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 16(8P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE 
                          4                         495 
  DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 17(8Q24.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE 
                             7                            492 
  DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE 
                             7                            492 
[1] "DEL PEAK 18(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           20                           479 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           20                           479 
[1] "DEL PEAK 19(9Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE 
                            27                            472 
  DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE 
                            27                            472 
[1] "DEL PEAK 20(10P12.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE 
                              7                             492 
  DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE 
                              7                             492 
[1] "DEL PEAK 21(10Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE 
                            12                            487 
  DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE 
                            12                            487 
[1] "DEL PEAK 22(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             12                             487 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             12                             487 
[1] "DEL PEAK 23(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE 
                             7                            492 
  DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE 
                             7                            492 
[1] "DEL PEAK 24(13Q12.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE 
                             18                             481 
  DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE 
                             18                             481 
[1] "DEL PEAK 25(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE 
                            19                            480 
  DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE 
                            19                            480 
[1] "DEL PEAK 27(15Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE 
                             9                            490 
  DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE 
                             9                            490 
[1] "DEL PEAK 29(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE 
                             6                            493 
  DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE 
                             6                            493 
[1] "DEL PEAK 30(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE 
                             8                            491 
  DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE 
                             8                            491 
[1] "DEL PEAK 31(18Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE 
                             4                            495 
  DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE 
                             4                            495 
[1] "DEL PEAK 32(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE 
                             7                            492 
  DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE 
                             7                            492 
[1] "DEL PEAK 33(19P13.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE 
                              8                             491 
  DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE 
                              8                             491 
[1] "DEL PEAK 36(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE 
                             9                            490 
  DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE 
                             9                            490 
[1] "DEL PEAK 37(22Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE 
                            90                            409 
  DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE 
                            90                            409 
[1] "DEL PEAK 38(22Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE 
                            89                            410 
  DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE 
                            89                            410 
[1] "DEL PEAK 39(22Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE 
                            89                            410 
  DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE 
                            89                            410 
[1] "DEL PEAK 40(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                             90                             409 
  DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE 
                             90                             409 
[1] "DEL PEAK 41(XQ23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE 
                          4                         495 
  DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 42(XQ22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE 
                            4                           495 
  DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE 
                            4                           495 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 499 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 499 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.32) MUTATED        4      1      0
  AMP PEAK  1(1P36.32) WILD-TYPE     52    359     83
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            4                             52
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.32) MUTATED        3      1      1
  AMP PEAK  1(1P36.32) WILD-TYPE    273    153     68
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                            273
  CLUS_2                            1                            153
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.32) MUTATED        0      1      0      1
  AMP PEAK  1(1P36.32) WILD-TYPE     64     63     42     48
D1V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  1(1P36.32) MUTATED"
clus
  AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GQ                     TCGA-EL-A3GR 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GS                     TCGA-EL-A3GU 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GV                     TCGA-EL-A3GW 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GX                     TCGA-EL-A3GY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GZ                     TCGA-EL-A3H1 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3H2                     TCGA-EL-A3H3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3H4                     TCGA-EL-A3H5 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3H7                     TCGA-EL-A3H8 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3MW                     TCGA-EL-A3MX 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3MY                     TCGA-EL-A3MZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3N2                     TCGA-EL-A3N3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1CT                     TCGA-EM-A1CU 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1CV                     TCGA-EM-A1CW 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1YA                     TCGA-EM-A1YB 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1YC                     TCGA-EM-A1YD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39N 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39P                     TCGA-ET-A39R 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39T                     TCGA-ET-A3BN 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3BP                     TCGA-ET-A3BS 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK  1(1P36.32) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.32) MUTATED        0      0      0      0      1      1
  AMP PEAK  1(1P36.32) WILD-TYPE     46     28     33     29     46     26
                                vv
clus                             CLUS_7
  AMP PEAK  1(1P36.32) MUTATED        0
  AMP PEAK  1(1P36.32) WILD-TYPE      9
D1V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  1(1P36.32) MUTATED"
clus
  AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GQ                     TCGA-EL-A3GR 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GS                     TCGA-EL-A3GU 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GV                     TCGA-EL-A3GW 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GX                     TCGA-EL-A3GY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3GZ                     TCGA-EL-A3H1 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3H2                     TCGA-EL-A3H3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3H4                     TCGA-EL-A3H5 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3H7                     TCGA-EL-A3H8 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3MW                     TCGA-EL-A3MX 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3MY                     TCGA-EL-A3MZ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EL-A3N2                     TCGA-EL-A3N3 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1CT                     TCGA-EM-A1CU 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1CV                     TCGA-EM-A1CW 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1YA                     TCGA-EM-A1YB 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1YC                     TCGA-EM-A1YD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39N 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39P                     TCGA-ET-A39R 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A39T                     TCGA-ET-A3BN 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3BP                     TCGA-ET-A3BS 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK  1(1P36.32) WILD-TYPE" "AMP PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK  1(1P36.32) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.32) MUTATED        3      1      1      0
  AMP PEAK  1(1P36.32) WILD-TYPE    165    154     57    116
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                            165
  CLUS_2                            1                            154
  CLUS_3                            1                             57
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.32) MUTATED        4      1      0      0      0
  AMP PEAK  1(1P36.32) WILD-TYPE    100    133     86     95     78
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            4                            100
  CLUS_2                            1                            133
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.32) MUTATED        3      1      1
  AMP PEAK  1(1P36.32) WILD-TYPE    178    150    165
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                            178
  CLUS_2                            1                            150
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.32) MUTATED        3      1      1
  AMP PEAK  1(1P36.32) WILD-TYPE    175    127    191
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            1                            127
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.32) MUTATED        3      1      0
  AMP PEAK  1(1P36.32) WILD-TYPE    156    163    145
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            1                            163
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.32) MUTATED        2      1      1
  AMP PEAK  1(1P36.32) WILD-TYPE    162    125    177
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.32) MUTATED AMP PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            1                            125
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P32.3) MUTATED        2      3      0
  AMP PEAK  2(1P32.3) WILD-TYPE     54    357     83
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           3                           357
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P32.3) MUTATED        2      2      1
  AMP PEAK  2(1P32.3) WILD-TYPE    274    152     68
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           2                           152
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P32.3) MUTATED        0      1      0      0
  AMP PEAK  2(1P32.3) WILD-TYPE     64     63     42     49
D2V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1P32.3) MUTATED"
clus
  AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE 
                            1                           218 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BU 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A239                    TCGA-FE-A23A 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FY-A2QD                    TCGA-FY-A3BL 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FY-A3ON                    TCGA-GE-A2C6 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-H2-A2K9                    TCGA-IM-A3EB 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IM-A3ED                    TCGA-J8-A3NZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-J8-A3O0                    TCGA-J8-A3O1 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P32.3) MUTATED        0      0      0      0      0      1
  AMP PEAK  2(1P32.3) WILD-TYPE     46     28     33     29     47     26
                               vv
clus                            CLUS_7
  AMP PEAK  2(1P32.3) MUTATED        0
  AMP PEAK  2(1P32.3) WILD-TYPE      9
D2V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1P32.3) MUTATED"
clus
  AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE 
                            1                           218 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BU 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FE-A239                    TCGA-FE-A23A 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FY-A2QD                    TCGA-FY-A3BL 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FY-A3ON                    TCGA-GE-A2C6 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-H2-A2K9                    TCGA-IM-A3EB 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IM-A3ED                    TCGA-J8-A3NZ 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-J8-A3O0                    TCGA-J8-A3O1 
"AMP PEAK  2(1P32.3) WILD-TYPE" "AMP PEAK  2(1P32.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P32.3) MUTATED        2      2      1      0
  AMP PEAK  2(1P32.3) WILD-TYPE    166    153     57    116
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                           2                           153
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P32.3) MUTATED        2      2      1      0      0
  AMP PEAK  2(1P32.3) WILD-TYPE    102    132     85     95     78
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                           2                           132
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P32.3) MUTATED        3      2      0
  AMP PEAK  2(1P32.3) WILD-TYPE    178    149    166
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           3                           178
  CLUS_2                           2                           149
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P32.3) MUTATED        3      2      0
  AMP PEAK  2(1P32.3) WILD-TYPE    175    126    192
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           3                           175
  CLUS_2                           2                           126
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P32.3) MUTATED        2      2      0
  AMP PEAK  2(1P32.3) WILD-TYPE    157    162    145
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           2                           157
  CLUS_2                           2                           162
  CLUS_3                           0                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P32.3) MUTATED        2      2      0
  AMP PEAK  2(1P32.3) WILD-TYPE    162    124    178
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P32.3) MUTATED AMP PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           2                           162
  CLUS_2                           2                           124
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P31.1) MUTATED        2      2      1
  AMP PEAK  3(1P31.1) WILD-TYPE     54    358     82
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           2                           358
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P31.1) MUTATED        2      2      1
  AMP PEAK  3(1P31.1) WILD-TYPE    274    152     68
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           2                           152
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P31.1) MUTATED        0      1      0      1
  AMP PEAK  3(1P31.1) WILD-TYPE     64     63     42     48
D3V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  3(1P31.1) MUTATED"
clus
  AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q0                    TCGA-DJ-A2Q1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q4 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q5                    TCGA-DJ-A2Q6 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q7                    TCGA-DJ-A2Q8 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q9                    TCGA-DJ-A2QA 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2QB                    TCGA-DJ-A2QC 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E3-A3DY                    TCGA-E3-A3DZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E3-A3E0                    TCGA-E3-A3E1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E8-A2EA                    TCGA-EL-A3CL 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK  3(1P31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1P31.1) MUTATED        0      0      0      0      1      1
  AMP PEAK  3(1P31.1) WILD-TYPE     46     28     33     29     46     26
                               vv
clus                            CLUS_7
  AMP PEAK  3(1P31.1) MUTATED        0
  AMP PEAK  3(1P31.1) WILD-TYPE      9
D3V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  3(1P31.1) MUTATED"
clus
  AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q0                    TCGA-DJ-A2Q1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q4 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q5                    TCGA-DJ-A2Q6 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q7                    TCGA-DJ-A2Q8 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2Q9                    TCGA-DJ-A2QA 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DJ-A2QB                    TCGA-DJ-A2QC 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E3-A3DY                    TCGA-E3-A3DZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E3-A3E0                    TCGA-E3-A3E1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-E8-A2EA                    TCGA-EL-A3CL 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  3(1P31.1) WILD-TYPE" "AMP PEAK  3(1P31.1) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK  3(1P31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P31.1) MUTATED        2      2      1      0
  AMP PEAK  3(1P31.1) WILD-TYPE    166    153     57    116
D3V5, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                           2                           153
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P31.1) MUTATED        1      2      1      1      0
  AMP PEAK  3(1P31.1) WILD-TYPE    103    132     85     94     78
D3V6, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           2                           132
  CLUS_3                           1                            85
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P31.1) MUTATED        2      2      1
  AMP PEAK  3(1P31.1) WILD-TYPE    179    149    165
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           2                           149
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P31.1) MUTATED        2      2      1
  AMP PEAK  3(1P31.1) WILD-TYPE    176    126    191
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           2                           126
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P31.1) MUTATED        2      1      1
  AMP PEAK  3(1P31.1) WILD-TYPE    157    163    144
D3V9, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           2                           157
  CLUS_2                           1                           163
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P31.1) MUTATED        1      2      1
  AMP PEAK  3(1P31.1) WILD-TYPE    163    124    177
D3V10, multiclass
        clus
vv       AMP PEAK  3(1P31.1) MUTATED AMP PEAK  3(1P31.1) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           2                           124
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q31.2) MUTATED       19      9      1
  AMP PEAK  4(1Q31.2) WILD-TYPE     37    351     82
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                           9                           351
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q31.2) MUTATED       20      3      6
  AMP PEAK  4(1Q31.2) WILD-TYPE    256    151     63
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          20                           256
  CLUS_2                           3                           151
  CLUS_3                           6                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q31.2) MUTATED        0      6      1      5
  AMP PEAK  4(1Q31.2) WILD-TYPE     64     58     41     44
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                           0                            64
  CLUS_2                           6                            58
  CLUS_3                           1                            41
  CLUS_4                           5                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q31.2) MUTATED        0      1      3      0      3      5
  AMP PEAK  4(1Q31.2) WILD-TYPE     46     27     30     29     44     22
                               vv
clus                            CLUS_7
  AMP PEAK  4(1Q31.2) MUTATED        0
  AMP PEAK  4(1Q31.2) WILD-TYPE      9
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           1                            27
  CLUS_3                           3                            30
  CLUS_4                           0                            29
  CLUS_5                           3                            44
  CLUS_6                           5                            22
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q31.2) MUTATED       19      3      5      2
  AMP PEAK  4(1Q31.2) WILD-TYPE    149    152     53    114
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          19                           149
  CLUS_2                           3                           152
  CLUS_3                           5                            53
  CLUS_4                           2                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q31.2) MUTATED       18      3      1      2      5
  AMP PEAK  4(1Q31.2) WILD-TYPE     86    131     85     93     73
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          18                            86
  CLUS_2                           3                           131
  CLUS_3                           1                            85
  CLUS_4                           2                            93
  CLUS_5                           5                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q31.2) MUTATED       16      6      7
  AMP PEAK  4(1Q31.2) WILD-TYPE    165    145    159
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          16                           165
  CLUS_2                           6                           145
  CLUS_3                           7                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q31.2) MUTATED       16      4      9
  AMP PEAK  4(1Q31.2) WILD-TYPE    162    124    183
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          16                           162
  CLUS_2                           4                           124
  CLUS_3                           9                           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q31.2) MUTATED       15      7      3
  AMP PEAK  4(1Q31.2) WILD-TYPE    144    157    142
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          15                           144
  CLUS_2                           7                           157
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q31.2) MUTATED       15      3      7
  AMP PEAK  4(1Q31.2) WILD-TYPE    149    123    171
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q31.2) MUTATED AMP PEAK  4(1Q31.2) WILD-TYPE
  CLUS_1                          15                           149
  CLUS_2                           3                           123
  CLUS_3                           7                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q43) MUTATED       20      8      1
  AMP PEAK  5(1Q43) WILD-TYPE     36    352     82
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        20                          36
  CLUS_2                         8                         352
  CLUS_3                         1                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q43) MUTATED       21      2      6
  AMP PEAK  5(1Q43) WILD-TYPE    255    152     63
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        21                         255
  CLUS_2                         2                         152
  CLUS_3                         6                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q43) MUTATED        0      6      1      5
  AMP PEAK  5(1Q43) WILD-TYPE     64     58     41     44
D5V3, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                         0                          64
  CLUS_2                         6                          58
  CLUS_3                         1                          41
  CLUS_4                         5                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(1Q43) MUTATED        0      1      4      0      3      4      0
  AMP PEAK  5(1Q43) WILD-TYPE     46     27     29     29     44     23      9
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                         0                          46
  CLUS_2                         1                          27
  CLUS_3                         4                          29
  CLUS_4                         0                          29
  CLUS_5                         3                          44
  CLUS_6                         4                          23
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q43) MUTATED       19      2      5      3
  AMP PEAK  5(1Q43) WILD-TYPE    149    153     53    113
D5V5, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        19                         149
  CLUS_2                         2                         153
  CLUS_3                         5                          53
  CLUS_4                         3                         113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q43) MUTATED       19      2      1      3      4
  AMP PEAK  5(1Q43) WILD-TYPE     85    132     85     92     74
D5V6, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        19                          85
  CLUS_2                         2                         132
  CLUS_3                         1                          85
  CLUS_4                         3                          92
  CLUS_5                         4                          74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q43) MUTATED       18      5      6
  AMP PEAK  5(1Q43) WILD-TYPE    163    146    160
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        18                         163
  CLUS_2                         5                         146
  CLUS_3                         6                         160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q43) MUTATED       18      3      8
  AMP PEAK  5(1Q43) WILD-TYPE    160    125    184
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        18                         160
  CLUS_2                         3                         125
  CLUS_3                         8                         184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q43) MUTATED       17      5      3
  AMP PEAK  5(1Q43) WILD-TYPE    142    159    142
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        17                         142
  CLUS_2                         5                         159
  CLUS_3                         3                         142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q43) MUTATED       17      2      6
  AMP PEAK  5(1Q43) WILD-TYPE    147    124    172
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q43) MUTATED AMP PEAK  5(1Q43) WILD-TYPE
  CLUS_1                        17                         147
  CLUS_2                         2                         124
  CLUS_3                         6                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(2P16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P16.1) MUTATED        2      1      0
  AMP PEAK  6(2P16.1) WILD-TYPE     54    359     83
D6V1, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P16.1) MUTATED        2      1      0
  AMP PEAK  6(2P16.1) WILD-TYPE    274    153     69
D6V2, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           1                           153
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P16.1) MUTATED        1      0      1      0
  AMP PEAK  6(2P16.1) WILD-TYPE     63     64     41     49
D6V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  6(2P16.1) MUTATED"
clus
  AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2N0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39P 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK  6(2P16.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(2P16.1) MUTATED        0      1      0      1      0      0
  AMP PEAK  6(2P16.1) WILD-TYPE     46     27     33     28     47     27
                               vv
clus                            CLUS_7
  AMP PEAK  6(2P16.1) MUTATED        0
  AMP PEAK  6(2P16.1) WILD-TYPE      9
D6V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  6(2P16.1) MUTATED"
clus
  AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2N0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39P 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  6(2P16.1) WILD-TYPE" "AMP PEAK  6(2P16.1) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK  6(2P16.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P16.1) MUTATED        1      1      0      1
  AMP PEAK  6(2P16.1) WILD-TYPE    167    154     58    115
D6V5, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           1                           154
  CLUS_3                           0                            58
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(2P16.1) MUTATED        0      1      1      1      0
  AMP PEAK  6(2P16.1) WILD-TYPE    104    133     85     94     78
D6V6, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           1                           133
  CLUS_3                           1                            85
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P16.1) MUTATED        1      1      1
  AMP PEAK  6(2P16.1) WILD-TYPE    180    150    165
D6V7, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           1                           180
  CLUS_2                           1                           150
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P16.1) MUTATED        1      1      1
  AMP PEAK  6(2P16.1) WILD-TYPE    177    127    191
D6V8, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           1                           177
  CLUS_2                           1                           127
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P16.1) MUTATED        0      1      2
  AMP PEAK  6(2P16.1) WILD-TYPE    159    163    143
D6V9, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           0                           159
  CLUS_2                           1                           163
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P16.1) MUTATED        1      1      1
  AMP PEAK  6(2P16.1) WILD-TYPE    163    125    177
D6V10, multiclass
        clus
vv       AMP PEAK  6(2P16.1) MUTATED AMP PEAK  6(2P16.1) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           1                           125
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  8(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q37.2) MUTATED        1      1      1
  AMP PEAK  8(2Q37.2) WILD-TYPE     55    359     82
D7V1, multiclass
        clus
vv       AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                           1                            55
  CLUS_2                           1                           359
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q37.2) MUTATED        1      2      0
  AMP PEAK  8(2Q37.2) WILD-TYPE    275    152     69
D7V2, multiclass
        clus
vv       AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           2                           152
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q37.2) MUTATED        1      0      0      1
  AMP PEAK  8(2Q37.2) WILD-TYPE     63     64     42     48
D7V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  8(2Q37.2) MUTATED"
clus
  AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A291 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13O 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(2Q37.2) MUTATED        1      0      1      0      0      0
  AMP PEAK  8(2Q37.2) WILD-TYPE     45     28     32     29     47     27
                               vv
clus                            CLUS_7
  AMP PEAK  8(2Q37.2) MUTATED        0
  AMP PEAK  8(2Q37.2) WILD-TYPE      9
D7V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  8(2Q37.2) MUTATED"
clus
  AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A291 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13O 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q37.2) MUTATED        0      2      0      1
  AMP PEAK  8(2Q37.2) WILD-TYPE    168    153     58    115
D7V5, multiclass
        clus
vv       AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           2                           153
  CLUS_3                           0                            58
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q37.2) MUTATED        0      2      0      1      0
  AMP PEAK  8(2Q37.2) WILD-TYPE    104    132     86     94     78
D7V6, multiclass
        clus
vv       AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           2                           132
  CLUS_3                           0                            86
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q37.2) MUTATED        0      2      1
  AMP PEAK  8(2Q37.2) WILD-TYPE    181    149    165
D7V7, multiclass
        clus
vv       AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                           2                           149
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q37.2) MUTATED        0      2      1
  AMP PEAK  8(2Q37.2) WILD-TYPE    178    126    191
D7V8, multiclass
        clus
vv       AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                           2                           126
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q37.2) MUTATED        0      1      1
  AMP PEAK  8(2Q37.2) WILD-TYPE    159    163    144
D7V9, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  8(2Q37.2) MUTATED"
clus
  AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE 
                            2                           466 
                   TCGA-4C-A93U                    TCGA-BJ-A0YZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z0                    TCGA-BJ-A0Z2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z3                    TCGA-BJ-A0ZB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZH 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28X                    TCGA-BJ-A28Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2N8                    TCGA-BJ-A2N9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3PR                    TCGA-BJ-A3PT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3PU                    TCGA-BJ-A45C 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45D                    TCGA-BJ-A45E 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45F                    TCGA-BJ-A45G 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45H                    TCGA-BJ-A45I 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45J                    TCGA-BJ-A45K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A4O8                    TCGA-BJ-A4O9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-CE-A481 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A482                    TCGA-CE-A483 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A484                    TCGA-CE-A485 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A0XZ                    TCGA-DE-A0Y2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A0Y3                    TCGA-DE-A2OL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DE-A4M8 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A4M9                    TCGA-DE-A4MA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A4MB                    TCGA-DE-A4MC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A69J                    TCGA-DE-A69K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A7U5                    TCGA-DJ-A13L 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13T                    TCGA-DJ-A13X 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QH                    TCGA-DJ-A1QI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QQ                    TCGA-DJ-A2PN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q0                    TCGA-DJ-A2Q1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DJ-A3UK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UM                    TCGA-DJ-A3UN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UO                    TCGA-DJ-A3UP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UQ                    TCGA-DJ-A3UR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UT                    TCGA-DJ-A3UU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UW                    TCGA-DJ-A3UX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UY                    TCGA-DJ-A3UZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V0                    TCGA-DJ-A3V2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V3                    TCGA-DJ-A3V4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V5                    TCGA-DJ-A3V8 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V9                    TCGA-DJ-A3VA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VB                    TCGA-DJ-A3VD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VE                    TCGA-DJ-A3VF 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VG                    TCGA-DJ-A3VI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VJ                    TCGA-DJ-A3VK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VL                    TCGA-DJ-A3VM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4UL                    TCGA-DJ-A4UP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4UQ                    TCGA-DJ-A4UR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4UT                    TCGA-DJ-A4UW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4V0                    TCGA-DJ-A4V2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4V4                    TCGA-DJ-A4V5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DO-A2HM                    TCGA-E3-A3DY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A242                    TCGA-E8-A2EA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A3X7                    TCGA-E8-A413 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A414                    TCGA-E8-A415 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A416                    TCGA-E8-A417 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A418                    TCGA-E8-A419 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A432                    TCGA-E8-A433 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A434                    TCGA-E8-A436 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A437                    TCGA-E8-A438 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A44K                    TCGA-E8-A44M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EL-A3T0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T1                    TCGA-EL-A3T2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T3                    TCGA-EL-A3T6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T7                    TCGA-EL-A3T8 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T9                    TCGA-EL-A3TA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3TB                    TCGA-EL-A3ZG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZH                    TCGA-EL-A3ZK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZL                    TCGA-EL-A3ZM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZN                    TCGA-EL-A3ZO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZP                    TCGA-EL-A3ZQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZR                    TCGA-EL-A3ZS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZT                    TCGA-EL-A4JV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4JW                    TCGA-EL-A4JX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4JZ                    TCGA-EL-A4K0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4K1                    TCGA-EL-A4K2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4K4                    TCGA-EL-A4K6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4K7                    TCGA-EL-A4K9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4KD                    TCGA-EL-A4KG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4KH                    TCGA-EL-A4KI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CS                    TCGA-EM-A1CU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22K                    TCGA-EM-A22L 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22N 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CT                    TCGA-EM-A2CU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2OX                    TCGA-EM-A2OZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2P0                    TCGA-EM-A2P1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2P2                    TCGA-EM-A2P3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AK                    TCGA-EM-A3AL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3AQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AR                    TCGA-EM-A3FJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FK                    TCGA-EM-A3FM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-EM-A3FQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FR                    TCGA-EM-A3O3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3O6                    TCGA-EM-A3O7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3O8                    TCGA-EM-A3O9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3OA                    TCGA-EM-A3OB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3ST                    TCGA-EM-A3SU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3SZ                    TCGA-EM-A4FF 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FH                    TCGA-EM-A4FM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FN                    TCGA-EM-A4FO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FQ                    TCGA-EM-A4FR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FU                    TCGA-EM-A4FV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4G1                    TCGA-ET-A25G 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25J                    TCGA-ET-A25K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25N                    TCGA-ET-A25O 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25P                    TCGA-ET-A25R 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2MX                    TCGA-ET-A2MY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39O                    TCGA-ET-A39P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BO                    TCGA-ET-A3BP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BQ                    TCGA-ET-A3BS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DQ                    TCGA-ET-A3DR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DU                    TCGA-ET-A3DV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A40P                    TCGA-ET-A40Q 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A40R                    TCGA-ET-A40S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A40T                    TCGA-ET-A4KN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A4KQ                    TCGA-FE-A22Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A238                    TCGA-FE-A239 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FE-A3PA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A3PB                    TCGA-FE-A3PC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A3PD                    TCGA-FK-A3S3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FK-A3SB                    TCGA-FK-A3SE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FK-A3SG                    TCGA-FK-A3SH 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FK-A4UB                    TCGA-FY-A2QD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3I4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3I5                    TCGA-FY-A3NM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3NN                    TCGA-FY-A3ON 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3R6                    TCGA-FY-A3R7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3R8                    TCGA-FY-A3R9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3RA                    TCGA-FY-A3TY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3W9                    TCGA-FY-A3WA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3YR                    TCGA-FY-A40K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A40L                    TCGA-FY-A40M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A40N                    TCGA-FY-A4B0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A4B3                    TCGA-FY-A4B4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A76V                    TCGA-GE-A2C6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-H2-A26U                    TCGA-H2-A2K9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-H2-A3RH                    TCGA-H2-A3RI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-H2-A421                    TCGA-H2-A422 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A3U2                    TCGA-IM-A3U3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A41Y                    TCGA-IM-A41Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A420                    TCGA-IM-A4EB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3O1                    TCGA-J8-A3O2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3YD                    TCGA-J8-A3YE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3YF                    TCGA-J8-A3YG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3YH                    TCGA-J8-A42S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A4HW                    TCGA-KS-A41F 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A41I                    TCGA-KS-A41J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4I1                    TCGA-KS-A4I3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4I5                    TCGA-KS-A4I7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4I9                    TCGA-KS-A4IC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4ID                    TCGA-L6-A4EP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-L6-A4EQ                    TCGA-L6-A4ET 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-L6-A4EU                    TCGA-MK-A4N6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-MK-A4N7                    TCGA-MK-A4N9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-MK-A84Z                    TCGA-QD-A8IV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q37.2) MUTATED        0      1      1
  AMP PEAK  8(2Q37.2) WILD-TYPE    164    125    177
D7V10, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  8(2Q37.2) MUTATED"
clus
  AMP PEAK  8(2Q37.2) MUTATED AMP PEAK  8(2Q37.2) WILD-TYPE 
                            2                           466 
                   TCGA-4C-A93U                    TCGA-BJ-A0YZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z0                    TCGA-BJ-A0Z2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0Z3                    TCGA-BJ-A0ZB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZH 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A28X                    TCGA-BJ-A28Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2N8                    TCGA-BJ-A2N9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3PR                    TCGA-BJ-A3PT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A3PU                    TCGA-BJ-A45C 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45D                    TCGA-BJ-A45E 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45F                    TCGA-BJ-A45G 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45H                    TCGA-BJ-A45I 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A45J                    TCGA-BJ-A45K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-BJ-A4O8                    TCGA-BJ-A4O9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-CE-A481 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A482                    TCGA-CE-A483 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-CE-A484                    TCGA-CE-A485 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A0XZ                    TCGA-DE-A0Y2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A0Y3                    TCGA-DE-A2OL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DE-A4M8 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A4M9                    TCGA-DE-A4MA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A4MB                    TCGA-DE-A4MC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A69J                    TCGA-DE-A69K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DE-A7U5                    TCGA-DJ-A13L 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A13T                    TCGA-DJ-A13X 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QH                    TCGA-DJ-A1QI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A1QQ                    TCGA-DJ-A2PN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q0                    TCGA-DJ-A2Q1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DJ-A3UK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UM                    TCGA-DJ-A3UN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UO                    TCGA-DJ-A3UP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UQ                    TCGA-DJ-A3UR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UT                    TCGA-DJ-A3UU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UW                    TCGA-DJ-A3UX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3UY                    TCGA-DJ-A3UZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V0                    TCGA-DJ-A3V2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V3                    TCGA-DJ-A3V4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V5                    TCGA-DJ-A3V8 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3V9                    TCGA-DJ-A3VA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VB                    TCGA-DJ-A3VD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VE                    TCGA-DJ-A3VF 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VG                    TCGA-DJ-A3VI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VJ                    TCGA-DJ-A3VK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A3VL                    TCGA-DJ-A3VM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4UL                    TCGA-DJ-A4UP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4UQ                    TCGA-DJ-A4UR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4UT                    TCGA-DJ-A4UW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4V0                    TCGA-DJ-A4V2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DJ-A4V4                    TCGA-DJ-A4V5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-DO-A2HM                    TCGA-E3-A3DY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A242                    TCGA-E8-A2EA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A3X7                    TCGA-E8-A413 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A414                    TCGA-E8-A415 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A416                    TCGA-E8-A417 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A418                    TCGA-E8-A419 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A432                    TCGA-E8-A433 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A434                    TCGA-E8-A436 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A437                    TCGA-E8-A438 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-E8-A44K                    TCGA-E8-A44M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EL-A3T0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T1                    TCGA-EL-A3T2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T3                    TCGA-EL-A3T6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T7                    TCGA-EL-A3T8 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3T9                    TCGA-EL-A3TA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3TB                    TCGA-EL-A3ZG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZH                    TCGA-EL-A3ZK 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZL                    TCGA-EL-A3ZM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZN                    TCGA-EL-A3ZO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZP                    TCGA-EL-A3ZQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZR                    TCGA-EL-A3ZS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A3ZT                    TCGA-EL-A4JV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4JW                    TCGA-EL-A4JX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4JZ                    TCGA-EL-A4K0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4K1                    TCGA-EL-A4K2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4K4                    TCGA-EL-A4K6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4K7                    TCGA-EL-A4K9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4KD                    TCGA-EL-A4KG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EL-A4KH                    TCGA-EL-A4KI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CS                    TCGA-EM-A1CU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22K                    TCGA-EM-A22L 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22N 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2CT                    TCGA-EM-A2CU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OW 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2OX                    TCGA-EM-A2OZ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2P0                    TCGA-EM-A2P1 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A2P2                    TCGA-EM-A2P3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AK                    TCGA-EM-A3AL 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3AQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3AR                    TCGA-EM-A3FJ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FK                    TCGA-EM-A3FM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-EM-A3FQ 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3FR                    TCGA-EM-A3O3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3O6                    TCGA-EM-A3O7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3O8                    TCGA-EM-A3O9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3OA                    TCGA-EM-A3OB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3ST                    TCGA-EM-A3SU 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A3SZ                    TCGA-EM-A4FF 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FH                    TCGA-EM-A4FM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FN                    TCGA-EM-A4FO 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FQ                    TCGA-EM-A4FR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4FU                    TCGA-EM-A4FV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-EM-A4G1                    TCGA-ET-A25G 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25J                    TCGA-ET-A25K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25N                    TCGA-ET-A25O 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A25P                    TCGA-ET-A25R 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2MX                    TCGA-ET-A2MY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39O                    TCGA-ET-A39P 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BO                    TCGA-ET-A3BP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BQ                    TCGA-ET-A3BS 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DQ                    TCGA-ET-A3DR 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A3DU                    TCGA-ET-A3DV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A40P                    TCGA-ET-A40Q 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A40R                    TCGA-ET-A40S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A40T                    TCGA-ET-A4KN 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-ET-A4KQ                    TCGA-FE-A22Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A238                    TCGA-FE-A239 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FE-A3PA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A3PB                    TCGA-FE-A3PC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FE-A3PD                    TCGA-FK-A3S3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FK-A3SB                    TCGA-FK-A3SE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FK-A3SG                    TCGA-FK-A3SH 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FK-A4UB                    TCGA-FY-A2QD 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3I4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3I5                    TCGA-FY-A3NM 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3NN                    TCGA-FY-A3ON 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3R6                    TCGA-FY-A3R7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3R8                    TCGA-FY-A3R9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3RA                    TCGA-FY-A3TY 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3W9                    TCGA-FY-A3WA 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A3YR                    TCGA-FY-A40K 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A40L                    TCGA-FY-A40M 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A40N                    TCGA-FY-A4B0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A4B3                    TCGA-FY-A4B4 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-FY-A76V                    TCGA-GE-A2C6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-H2-A26U                    TCGA-H2-A2K9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-H2-A3RH                    TCGA-H2-A3RI 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-H2-A421                    TCGA-H2-A422 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A3U2                    TCGA-IM-A3U3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A41Y                    TCGA-IM-A41Z 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-IM-A420                    TCGA-IM-A4EB 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3O1                    TCGA-J8-A3O2 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3YD                    TCGA-J8-A3YE 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3YF                    TCGA-J8-A3YG 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A3YH                    TCGA-J8-A42S 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-J8-A4HW                    TCGA-KS-A41F 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A41I                    TCGA-KS-A41J 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4I1                    TCGA-KS-A4I3 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4I5                    TCGA-KS-A4I7 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4I9                    TCGA-KS-A4IC 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-KS-A4ID                    TCGA-L6-A4EP 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-L6-A4EQ                    TCGA-L6-A4ET 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-L6-A4EU                    TCGA-MK-A4N6 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-MK-A4N7                    TCGA-MK-A4N9 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 
                   TCGA-MK-A84Z                    TCGA-QD-A8IV 
"AMP PEAK  8(2Q37.2) WILD-TYPE" "AMP PEAK  8(2Q37.2) WILD-TYPE" 

Clustering(8) Variable = AMP PEAK  9(3P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P22.3) MUTATED        3      1      0
  AMP PEAK  9(3P22.3) WILD-TYPE     53    359     83
D8V1, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P22.3) MUTATED        1      3      0
  AMP PEAK  9(3P22.3) WILD-TYPE    275    151     69
D8V2, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           3                           151
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P22.3) MUTATED        1      1      0      1
  AMP PEAK  9(3P22.3) WILD-TYPE     63     63     42     48
D8V3, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           1                            63
  CLUS_3                           0                            42
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P22.3) MUTATED        1      0      0      0      1      1
  AMP PEAK  9(3P22.3) WILD-TYPE     45     28     33     29     46     26
                               vv
clus                            CLUS_7
  AMP PEAK  9(3P22.3) MUTATED        0
  AMP PEAK  9(3P22.3) WILD-TYPE      9
D8V4, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           0                            29
  CLUS_5                           1                            46
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P22.3) MUTATED        0      3      0      1
  AMP PEAK  9(3P22.3) WILD-TYPE    168    152     58    115
D8V5, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           3                           152
  CLUS_3                           0                            58
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P22.3) MUTATED        0      3      0      1      0
  AMP PEAK  9(3P22.3) WILD-TYPE    104    131     86     94     78
D8V6, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           3                           131
  CLUS_3                           0                            86
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P22.3) MUTATED        1      3      0
  AMP PEAK  9(3P22.3) WILD-TYPE    180    148    166
D8V7, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                           180
  CLUS_2                           3                           148
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P22.3) MUTATED        1      3      0
  AMP PEAK  9(3P22.3) WILD-TYPE    177    125    192
D8V8, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                           177
  CLUS_2                           3                           125
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P22.3) MUTATED        1      2      1
  AMP PEAK  9(3P22.3) WILD-TYPE    158    162    144
D8V9, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           2                           162
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P22.3) MUTATED        1      3      0
  AMP PEAK  9(3P22.3) WILD-TYPE    163    123    178
D8V10, multiclass
        clus
vv       AMP PEAK  9(3P22.3) MUTATED AMP PEAK  9(3P22.3) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           3                           123
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK 10(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        3      2      0
  AMP PEAK 10(3P14.1) WILD-TYPE     53    358     83
D9V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        2      3      0
  AMP PEAK 10(3P14.1) WILD-TYPE    274    151     69
D9V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           3                           151
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        0      1      0      2
  AMP PEAK 10(3P14.1) WILD-TYPE     64     63     42     47
D9V3, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            64
  CLUS_2                           1                            63
  CLUS_3                           0                            42
  CLUS_4                           2                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3P14.1) MUTATED        0      0      0      0      2      1
  AMP PEAK 10(3P14.1) WILD-TYPE     46     28     33     29     45     26
                               vv
clus                            CLUS_7
  AMP PEAK 10(3P14.1) MUTATED        0
  AMP PEAK 10(3P14.1) WILD-TYPE      9
D9V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           0                            29
  CLUS_5                           2                            45
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        1      2      0      2
  AMP PEAK 10(3P14.1) WILD-TYPE    167    153     58    114
D9V5, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           2                           153
  CLUS_3                           0                            58
  CLUS_4                           2                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED        0      2      2      1      0
  AMP PEAK 10(3P14.1) WILD-TYPE    104    132     84     94     78
D9V6, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           2                           132
  CLUS_3                           2                            84
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        2      2      1
  AMP PEAK 10(3P14.1) WILD-TYPE    179    149    165
D9V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           2                           149
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        2      2      1
  AMP PEAK 10(3P14.1) WILD-TYPE    176    126    191
D9V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           2                           126
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        2      2      1
  AMP PEAK 10(3P14.1) WILD-TYPE    157    162    144
D9V9, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           2                           157
  CLUS_2                           2                           162
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        2      2      1
  AMP PEAK 10(3P14.1) WILD-TYPE    162    124    177
D9V10, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           2                           162
  CLUS_2                           2                           124
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 11(4P16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(4P16.1) MUTATED        5      2      0
  AMP PEAK 11(4P16.1) WILD-TYPE     51    358     83
D10V1, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(4P16.1) MUTATED        1      6      0
  AMP PEAK 11(4P16.1) WILD-TYPE    275    148     69
D10V2, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           6                           148
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(4P16.1) MUTATED        2      0      1      0
  AMP PEAK 11(4P16.1) WILD-TYPE     62     64     41     49
D10V3, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           0                            64
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(4P16.1) MUTATED        2      0      0      1      0      0
  AMP PEAK 11(4P16.1) WILD-TYPE     44     28     33     28     47     27
                               vv
clus                            CLUS_7
  AMP PEAK 11(4P16.1) MUTATED        0
  AMP PEAK 11(4P16.1) WILD-TYPE      9
D10V4, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           0                            27
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(4P16.1) MUTATED        1      6      0      0
  AMP PEAK 11(4P16.1) WILD-TYPE    167    149     58    116
D10V5, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           6                           149
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(4P16.1) MUTATED        0      6      0      0      1
  AMP PEAK 11(4P16.1) WILD-TYPE    104    128     86     95     77
D10V6, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           6                           128
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(4P16.1) MUTATED        2      5      0
  AMP PEAK 11(4P16.1) WILD-TYPE    179    146    166
D10V7, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           5                           146
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(4P16.1) MUTATED        2      5      0
  AMP PEAK 11(4P16.1) WILD-TYPE    176    123    192
D10V8, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           5                           123
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(4P16.1) MUTATED        3      3      1
  AMP PEAK 11(4P16.1) WILD-TYPE    156    161    144
D10V9, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           3                           156
  CLUS_2                           3                           161
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(4P16.1) MUTATED        3      4      0
  AMP PEAK 11(4P16.1) WILD-TYPE    161    122    178
D10V10, multiclass
        clus
vv       AMP PEAK 11(4P16.1) MUTATED AMP PEAK 11(4P16.1) WILD-TYPE
  CLUS_1                           3                           161
  CLUS_2                           4                           122
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 12(4Q28.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4Q28.2) MUTATED        5      1      0
  AMP PEAK 12(4Q28.2) WILD-TYPE     51    359     83
D11V1, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4Q28.2) MUTATED        1      5      0
  AMP PEAK 12(4Q28.2) WILD-TYPE    275    149     69
D11V2, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           5                           149
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4Q28.2) MUTATED        1      0      1      0
  AMP PEAK 12(4Q28.2) WILD-TYPE     63     64     41     49
D11V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 12(4Q28.2) MUTATED"
clus
  AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BT                    TCGA-ET-A3BU 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK 12(4Q28.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(4Q28.2) MUTATED        1      0      0      1      0      0
  AMP PEAK 12(4Q28.2) WILD-TYPE     45     28     33     28     47     27
                               vv
clus                            CLUS_7
  AMP PEAK 12(4Q28.2) MUTATED        0
  AMP PEAK 12(4Q28.2) WILD-TYPE      9
D11V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 12(4Q28.2) MUTATED"
clus
  AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BT                    TCGA-ET-A3BU 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK 12(4Q28.2) WILD-TYPE" "AMP PEAK 12(4Q28.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK 12(4Q28.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4Q28.2) MUTATED        1      5      0      0
  AMP PEAK 12(4Q28.2) WILD-TYPE    167    150     58    116
D11V5, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           5                           150
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(4Q28.2) MUTATED        0      5      0      0      1
  AMP PEAK 12(4Q28.2) WILD-TYPE    104    129     86     95     77
D11V6, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           5                           129
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4Q28.2) MUTATED        2      4      0
  AMP PEAK 12(4Q28.2) WILD-TYPE    179    147    166
D11V7, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           4                           147
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4Q28.2) MUTATED        2      4      0
  AMP PEAK 12(4Q28.2) WILD-TYPE    176    124    192
D11V8, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           4                           124
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4Q28.2) MUTATED        3      2      1
  AMP PEAK 12(4Q28.2) WILD-TYPE    156    162    144
D11V9, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           3                           156
  CLUS_2                           2                           162
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4Q28.2) MUTATED        3      3      0
  AMP PEAK 12(4Q28.2) WILD-TYPE    161    123    178
D11V10, multiclass
        clus
vv       AMP PEAK 12(4Q28.2) MUTATED AMP PEAK 12(4Q28.2) WILD-TYPE
  CLUS_1                           3                           161
  CLUS_2                           3                           123
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 13(4Q31.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4Q31.21) MUTATED        5      5      0
  AMP PEAK 13(4Q31.21) WILD-TYPE     51    355     83
D12V1, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            5                            355
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4Q31.21) MUTATED        4      6      0
  AMP PEAK 13(4Q31.21) WILD-TYPE    272    148     69
D12V2, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            4                            272
  CLUS_2                            6                            148
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4Q31.21) MUTATED        1      0      1      1
  AMP PEAK 13(4Q31.21) WILD-TYPE     63     64     41     48
D12V3, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            0                             64
  CLUS_3                            1                             41
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(4Q31.21) MUTATED        1      1      0      1      0      0
  AMP PEAK 13(4Q31.21) WILD-TYPE     45     27     33     28     47     27
                                vv
clus                             CLUS_7
  AMP PEAK 13(4Q31.21) MUTATED        0
  AMP PEAK 13(4Q31.21) WILD-TYPE      9
D12V4, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            0                             47
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4Q31.21) MUTATED        3      6      0      1
  AMP PEAK 13(4Q31.21) WILD-TYPE    165    149     58    115
D12V5, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            3                            165
  CLUS_2                            6                            149
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4Q31.21) MUTATED        2      6      1      0      1
  AMP PEAK 13(4Q31.21) WILD-TYPE    102    128     85     95     77
D12V6, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                            6                            128
  CLUS_3                            1                             85
  CLUS_4                            0                             95
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4Q31.21) MUTATED        2      4      4
  AMP PEAK 13(4Q31.21) WILD-TYPE    179    147    162
D12V7, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                            4                            147
  CLUS_3                            4                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4Q31.21) MUTATED        3      4      3
  AMP PEAK 13(4Q31.21) WILD-TYPE    175    124    189
D12V8, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            4                            124
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4Q31.21) MUTATED        3      3      3
  AMP PEAK 13(4Q31.21) WILD-TYPE    156    161    142
D12V9, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            3                            161
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4Q31.21) MUTATED        3      4      2
  AMP PEAK 13(4Q31.21) WILD-TYPE    161    122    176
D12V10, multiclass
        clus
vv       AMP PEAK 13(4Q31.21) MUTATED AMP PEAK 13(4Q31.21) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            4                            122
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 14(4Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(4Q32.3) MUTATED        5      2      0
  AMP PEAK 14(4Q32.3) WILD-TYPE     51    358     83
D13V1, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(4Q32.3) MUTATED        1      6      0
  AMP PEAK 14(4Q32.3) WILD-TYPE    275    148     69
D13V2, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           6                           148
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(4Q32.3) MUTATED        2      0      2      0
  AMP PEAK 14(4Q32.3) WILD-TYPE     62     64     40     49
D13V3, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           0                            64
  CLUS_3                           2                            40
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(4Q32.3) MUTATED        1      0      0      3      0      0
  AMP PEAK 14(4Q32.3) WILD-TYPE     45     28     33     26     47     27
                               vv
clus                            CLUS_7
  AMP PEAK 14(4Q32.3) MUTATED        0
  AMP PEAK 14(4Q32.3) WILD-TYPE      9
D13V4, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           3                            26
  CLUS_5                           0                            47
  CLUS_6                           0                            27
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(4Q32.3) MUTATED        1      6      0      0
  AMP PEAK 14(4Q32.3) WILD-TYPE    167    149     58    116
D13V5, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           6                           149
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(4Q32.3) MUTATED        1      6      0      0      0
  AMP PEAK 14(4Q32.3) WILD-TYPE    103    128     86     95     78
D13V6, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           6                           128
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(4Q32.3) MUTATED        2      5      0
  AMP PEAK 14(4Q32.3) WILD-TYPE    179    146    166
D13V7, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           5                           146
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(4Q32.3) MUTATED        2      5      0
  AMP PEAK 14(4Q32.3) WILD-TYPE    176    123    192
D13V8, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           5                           123
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(4Q32.3) MUTATED        3      2      2
  AMP PEAK 14(4Q32.3) WILD-TYPE    156    162    143
D13V9, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           3                           156
  CLUS_2                           2                           162
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(4Q32.3) MUTATED        2      4      1
  AMP PEAK 14(4Q32.3) WILD-TYPE    162    122    177
D13V10, multiclass
        clus
vv       AMP PEAK 14(4Q32.3) MUTATED AMP PEAK 14(4Q32.3) WILD-TYPE
  CLUS_1                           2                           162
  CLUS_2                           4                           122
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 15(5P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5P14.3) MUTATED       23      0      0
  AMP PEAK 15(5P14.3) WILD-TYPE     33    360     83
D14V1, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                          23                            33
  CLUS_2                           0                           360
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5P14.3) MUTATED        7     14      2
  AMP PEAK 15(5P14.3) WILD-TYPE    269    140     67
D14V2, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           7                           269
  CLUS_2                          14                           140
  CLUS_3                           2                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5P14.3) MUTATED        3      7      3      0
  AMP PEAK 15(5P14.3) WILD-TYPE     61     57     39     49
D14V3, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           7                            57
  CLUS_3                           3                            39
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(5P14.3) MUTATED        3      1      3      3      0      3
  AMP PEAK 15(5P14.3) WILD-TYPE     43     27     30     26     47     24
                               vv
clus                            CLUS_7
  AMP PEAK 15(5P14.3) MUTATED        0
  AMP PEAK 15(5P14.3) WILD-TYPE      9
D14V4, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           1                            27
  CLUS_3                           3                            30
  CLUS_4                           3                            26
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5P14.3) MUTATED        7     14      1      1
  AMP PEAK 15(5P14.3) WILD-TYPE    161    141     57    115
D14V5, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           7                           161
  CLUS_2                          14                           141
  CLUS_3                           1                            57
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5P14.3) MUTATED        8     14      0      1      0
  AMP PEAK 15(5P14.3) WILD-TYPE     96    120     86     94     78
D14V6, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           8                            96
  CLUS_2                          14                           120
  CLUS_3                           0                            86
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5P14.3) MUTATED        9     13      1
  AMP PEAK 15(5P14.3) WILD-TYPE    172    138    165
D14V7, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           9                           172
  CLUS_2                          13                           138
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5P14.3) MUTATED        9     13      1
  AMP PEAK 15(5P14.3) WILD-TYPE    169    115    191
D14V8, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                           9                           169
  CLUS_2                          13                           115
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5P14.3) MUTATED       10      6      4
  AMP PEAK 15(5P14.3) WILD-TYPE    149    158    141
D14V9, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                          10                           149
  CLUS_2                           6                           158
  CLUS_3                           4                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5P14.3) MUTATED       10      9      1
  AMP PEAK 15(5P14.3) WILD-TYPE    154    117    177
D14V10, multiclass
        clus
vv       AMP PEAK 15(5P14.3) MUTATED AMP PEAK 15(5P14.3) WILD-TYPE
  CLUS_1                          10                           154
  CLUS_2                           9                           117
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 16(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(5Q21.1) MUTATED       19      3      1
  AMP PEAK 16(5Q21.1) WILD-TYPE     37    357     82
D15V1, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                           3                           357
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(5Q21.1) MUTATED        5     14      4
  AMP PEAK 16(5Q21.1) WILD-TYPE    271    140     65
D15V2, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           5                           271
  CLUS_2                          14                           140
  CLUS_3                           4                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(5Q21.1) MUTATED        3      4      3      0
  AMP PEAK 16(5Q21.1) WILD-TYPE     61     60     39     49
D15V3, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           4                            60
  CLUS_3                           3                            39
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(5Q21.1) MUTATED        3      1      0      3      0      3
  AMP PEAK 16(5Q21.1) WILD-TYPE     43     27     33     26     47     24
                               vv
clus                            CLUS_7
  AMP PEAK 16(5Q21.1) MUTATED        0
  AMP PEAK 16(5Q21.1) WILD-TYPE      9
D15V4, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           1                            27
  CLUS_3                           0                            33
  CLUS_4                           3                            26
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(5Q21.1) MUTATED        3     15      2      3
  AMP PEAK 16(5Q21.1) WILD-TYPE    165    140     56    113
D15V5, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           3                           165
  CLUS_2                          15                           140
  CLUS_3                           2                            56
  CLUS_4                           3                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(5Q21.1) MUTATED        2     14      3      3      1
  AMP PEAK 16(5Q21.1) WILD-TYPE    102    120     83     92     77
D15V6, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                          14                           120
  CLUS_3                           3                            83
  CLUS_4                           3                            92
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(5Q21.1) MUTATED        5     14      4
  AMP PEAK 16(5Q21.1) WILD-TYPE    176    137    162
D15V7, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           5                           176
  CLUS_2                          14                           137
  CLUS_3                           4                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(5Q21.1) MUTATED        5     13      5
  AMP PEAK 16(5Q21.1) WILD-TYPE    173    115    187
D15V8, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           5                           173
  CLUS_2                          13                           115
  CLUS_3                           5                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(5Q21.1) MUTATED        6      6      7
  AMP PEAK 16(5Q21.1) WILD-TYPE    153    158    138
D15V9, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           6                           153
  CLUS_2                           6                           158
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(5Q21.1) MUTATED        6      9      4
  AMP PEAK 16(5Q21.1) WILD-TYPE    158    117    174
D15V10, multiclass
        clus
vv       AMP PEAK 16(5Q21.1) MUTATED AMP PEAK 16(5Q21.1) WILD-TYPE
  CLUS_1                           6                           158
  CLUS_2                           9                           117
  CLUS_3                           4                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 17(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(5Q21.1) MUTATED       18      2      0
  AMP PEAK 17(5Q21.1) WILD-TYPE     38    358     83
D16V1, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                          18                            38
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(5Q21.1) MUTATED        5     14      1
  AMP PEAK 17(5Q21.1) WILD-TYPE    271    140     68
D16V2, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           5                           271
  CLUS_2                          14                           140
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(5Q21.1) MUTATED        4      4      3      0
  AMP PEAK 17(5Q21.1) WILD-TYPE     60     60     39     49
D16V3, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           4                            60
  CLUS_3                           3                            39
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(5Q21.1) MUTATED        3      2      0      3      0      3
  AMP PEAK 17(5Q21.1) WILD-TYPE     43     26     33     26     47     24
                               vv
clus                            CLUS_7
  AMP PEAK 17(5Q21.1) MUTATED        0
  AMP PEAK 17(5Q21.1) WILD-TYPE      9
D16V4, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           2                            26
  CLUS_3                           0                            33
  CLUS_4                           3                            26
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(5Q21.1) MUTATED        3     14      0      3
  AMP PEAK 17(5Q21.1) WILD-TYPE    165    141     58    113
D16V5, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           3                           165
  CLUS_2                          14                           141
  CLUS_3                           0                            58
  CLUS_4                           3                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(5Q21.1) MUTATED        2     14      0      3      1
  AMP PEAK 17(5Q21.1) WILD-TYPE    102    120     86     92     77
D16V6, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                          14                           120
  CLUS_3                           0                            86
  CLUS_4                           3                            92
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(5Q21.1) MUTATED        3     14      3
  AMP PEAK 17(5Q21.1) WILD-TYPE    178    137    163
D16V7, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           3                           178
  CLUS_2                          14                           137
  CLUS_3                           3                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(5Q21.1) MUTATED        3     13      4
  AMP PEAK 17(5Q21.1) WILD-TYPE    175    115    188
D16V8, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           3                           175
  CLUS_2                          13                           115
  CLUS_3                           4                           188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(5Q21.1) MUTATED        4      7      6
  AMP PEAK 17(5Q21.1) WILD-TYPE    155    157    139
D16V9, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           4                           155
  CLUS_2                           7                           157
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(5Q21.1) MUTATED        4      9      4
  AMP PEAK 17(5Q21.1) WILD-TYPE    160    117    174
D16V10, multiclass
        clus
vv       AMP PEAK 17(5Q21.1) MUTATED AMP PEAK 17(5Q21.1) WILD-TYPE
  CLUS_1                           4                           160
  CLUS_2                           9                           117
  CLUS_3                           4                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 18(5Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(5Q33.1) MUTATED       18      3      0
  AMP PEAK 18(5Q33.1) WILD-TYPE     38    357     83
D17V1, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                          18                            38
  CLUS_2                           3                           357
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(5Q33.1) MUTATED        4     16      1
  AMP PEAK 18(5Q33.1) WILD-TYPE    272    138     68
D17V2, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           4                           272
  CLUS_2                          16                           138
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(5Q33.1) MUTATED        4      4      3      0
  AMP PEAK 18(5Q33.1) WILD-TYPE     60     60     39     49
D17V3, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           4                            60
  CLUS_3                           3                            39
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(5Q33.1) MUTATED        4      1      0      3      0      3
  AMP PEAK 18(5Q33.1) WILD-TYPE     42     27     33     26     47     24
                               vv
clus                            CLUS_7
  AMP PEAK 18(5Q33.1) MUTATED        0
  AMP PEAK 18(5Q33.1) WILD-TYPE      9
D17V4, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           4                            42
  CLUS_2                           1                            27
  CLUS_3                           0                            33
  CLUS_4                           3                            26
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(5Q33.1) MUTATED        2     16      0      3
  AMP PEAK 18(5Q33.1) WILD-TYPE    166    139     58    113
D17V5, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                          16                           139
  CLUS_3                           0                            58
  CLUS_4                           3                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(5Q33.1) MUTATED        2     16      1      2      0
  AMP PEAK 18(5Q33.1) WILD-TYPE    102    118     85     93     78
D17V6, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                          16                           118
  CLUS_3                           1                            85
  CLUS_4                           2                            93
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(5Q33.1) MUTATED        4     15      2
  AMP PEAK 18(5Q33.1) WILD-TYPE    177    136    164
D17V7, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           4                           177
  CLUS_2                          15                           136
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(5Q33.1) MUTATED        4     15      2
  AMP PEAK 18(5Q33.1) WILD-TYPE    174    113    190
D17V8, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           4                           174
  CLUS_2                          15                           113
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(5Q33.1) MUTATED        5      8      5
  AMP PEAK 18(5Q33.1) WILD-TYPE    154    156    140
D17V9, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           5                           154
  CLUS_2                           8                           156
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(5Q33.1) MUTATED        5     11      2
  AMP PEAK 18(5Q33.1) WILD-TYPE    159    115    176
D17V10, multiclass
        clus
vv       AMP PEAK 18(5Q33.1) MUTATED AMP PEAK 18(5Q33.1) WILD-TYPE
  CLUS_1                           5                           159
  CLUS_2                          11                           115
  CLUS_3                           2                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 19(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(5Q35.2) MUTATED       18      2      0
  AMP PEAK 19(5Q35.2) WILD-TYPE     38    358     83
D18V1, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                          18                            38
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(5Q35.2) MUTATED        4     15      1
  AMP PEAK 19(5Q35.2) WILD-TYPE    272    139     68
D18V2, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           4                           272
  CLUS_2                          15                           139
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(5Q35.2) MUTATED        3      5      3      0
  AMP PEAK 19(5Q35.2) WILD-TYPE     61     59     39     49
D18V3, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           5                            59
  CLUS_3                           3                            39
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(5Q35.2) MUTATED        3      1      0      3      0      4
  AMP PEAK 19(5Q35.2) WILD-TYPE     43     27     33     26     47     23
                               vv
clus                            CLUS_7
  AMP PEAK 19(5Q35.2) MUTATED        0
  AMP PEAK 19(5Q35.2) WILD-TYPE      9
D18V4, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           1                            27
  CLUS_3                           0                            33
  CLUS_4                           3                            26
  CLUS_5                           0                            47
  CLUS_6                           4                            23
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(5Q35.2) MUTATED        3     15      0      2
  AMP PEAK 19(5Q35.2) WILD-TYPE    165    140     58    114
D18V5, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           3                           165
  CLUS_2                          15                           140
  CLUS_3                           0                            58
  CLUS_4                           2                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(5Q35.2) MUTATED        3     15      0      2      0
  AMP PEAK 19(5Q35.2) WILD-TYPE    101    119     86     93     78
D18V6, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           3                           101
  CLUS_2                          15                           119
  CLUS_3                           0                            86
  CLUS_4                           2                            93
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(5Q35.2) MUTATED        4     14      2
  AMP PEAK 19(5Q35.2) WILD-TYPE    177    137    164
D18V7, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           4                           177
  CLUS_2                          14                           137
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(5Q35.2) MUTATED        4     14      2
  AMP PEAK 19(5Q35.2) WILD-TYPE    174    114    190
D18V8, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           4                           174
  CLUS_2                          14                           114
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(5Q35.2) MUTATED        5      7      5
  AMP PEAK 19(5Q35.2) WILD-TYPE    154    157    140
D18V9, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           5                           154
  CLUS_2                           7                           157
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(5Q35.2) MUTATED        5     10      2
  AMP PEAK 19(5Q35.2) WILD-TYPE    159    116    176
D18V10, multiclass
        clus
vv       AMP PEAK 19(5Q35.2) MUTATED AMP PEAK 19(5Q35.2) WILD-TYPE
  CLUS_1                           5                           159
  CLUS_2                          10                           116
  CLUS_3                           2                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 20(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(6P22.3) MUTATED        2      1      0
  AMP PEAK 20(6P22.3) WILD-TYPE     54    359     83
D19V1, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(6P22.3) MUTATED        0      3      0
  AMP PEAK 20(6P22.3) WILD-TYPE    276    151     69
D19V2, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                           3                           151
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(6P22.3) MUTATED        0      1      1      0
  AMP PEAK 20(6P22.3) WILD-TYPE     64     63     41     49
D19V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 20(6P22.3) MUTATED"
clus
  AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q4 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q5                    TCGA-DJ-A2Q6 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q7                    TCGA-DJ-A2Q8 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q9                    TCGA-DJ-A2QA 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2QB                    TCGA-DJ-A2QC 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E3-A3DY                    TCGA-E3-A3DZ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E3-A3E0                    TCGA-E3-A3E1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E8-A2EA                    TCGA-EL-A3CL 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BT                    TCGA-ET-A3BU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK 20(6P22.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(6P22.3) MUTATED        0      0      0      1      0      1
  AMP PEAK 20(6P22.3) WILD-TYPE     46     28     33     28     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 20(6P22.3) MUTATED        0
  AMP PEAK 20(6P22.3) WILD-TYPE      9
D19V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 20(6P22.3) MUTATED"
clus
  AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q4 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q5                    TCGA-DJ-A2Q6 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q7                    TCGA-DJ-A2Q8 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2Q9                    TCGA-DJ-A2QA 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DJ-A2QB                    TCGA-DJ-A2QC 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E3-A3DY                    TCGA-E3-A3DZ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E3-A3E0                    TCGA-E3-A3E1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-E8-A2EA                    TCGA-EL-A3CL 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BT                    TCGA-ET-A3BU 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK 20(6P22.3) WILD-TYPE" "AMP PEAK 20(6P22.3) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK 20(6P22.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(6P22.3) MUTATED        0      2      1      0
  AMP PEAK 20(6P22.3) WILD-TYPE    168    153     57    116
D19V5, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           2                           153
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(6P22.3) MUTATED        0      2      1      0      0
  AMP PEAK 20(6P22.3) WILD-TYPE    104    132     85     95     78
D19V6, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           2                           132
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(6P22.3) MUTATED        1      2      0
  AMP PEAK 20(6P22.3) WILD-TYPE    180    149    166
D19V7, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           1                           180
  CLUS_2                           2                           149
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(6P22.3) MUTATED        1      2      0
  AMP PEAK 20(6P22.3) WILD-TYPE    177    126    192
D19V8, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           1                           177
  CLUS_2                           2                           126
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(6P22.3) MUTATED        1      2      0
  AMP PEAK 20(6P22.3) WILD-TYPE    158    162    145
D19V9, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           2                           162
  CLUS_3                           0                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(6P22.3) MUTATED        1      2      0
  AMP PEAK 20(6P22.3) WILD-TYPE    163    124    178
D19V10, multiclass
        clus
vv       AMP PEAK 20(6P22.3) MUTATED AMP PEAK 20(6P22.3) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           2                           124
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 21(6P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(6P22.2) MUTATED        2      2      0
  AMP PEAK 21(6P22.2) WILD-TYPE     54    358     83
D20V1, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(6P22.2) MUTATED        0      3      1
  AMP PEAK 21(6P22.2) WILD-TYPE    276    151     68
D20V2, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                           3                           151
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(6P22.2) MUTATED        2      1      1      0
  AMP PEAK 21(6P22.2) WILD-TYPE     62     63     41     49
D20V3, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           1                            63
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(6P22.2) MUTATED        1      0      0      2      0      1
  AMP PEAK 21(6P22.2) WILD-TYPE     45     28     33     27     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 21(6P22.2) MUTATED        0
  AMP PEAK 21(6P22.2) WILD-TYPE      9
D20V4, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           2                            27
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(6P22.2) MUTATED        0      3      1      0
  AMP PEAK 21(6P22.2) WILD-TYPE    168    152     57    116
D20V5, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           3                           152
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(6P22.2) MUTATED        0      3      1      0      0
  AMP PEAK 21(6P22.2) WILD-TYPE    104    131     85     95     78
D20V6, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           3                           131
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(6P22.2) MUTATED        1      3      0
  AMP PEAK 21(6P22.2) WILD-TYPE    180    148    166
D20V7, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           1                           180
  CLUS_2                           3                           148
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(6P22.2) MUTATED        1      3      0
  AMP PEAK 21(6P22.2) WILD-TYPE    177    125    192
D20V8, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           1                           177
  CLUS_2                           3                           125
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(6P22.2) MUTATED        1      2      1
  AMP PEAK 21(6P22.2) WILD-TYPE    158    162    144
D20V9, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           2                           162
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(6P22.2) MUTATED        1      3      0
  AMP PEAK 21(6P22.2) WILD-TYPE    163    123    178
D20V10, multiclass
        clus
vv       AMP PEAK 21(6P22.2) MUTATED AMP PEAK 21(6P22.2) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           3                           123
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 22(6P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(6P21.31) MUTATED        2      1      0
  AMP PEAK 22(6P21.31) WILD-TYPE     54    359     83
D21V1, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(6P21.31) MUTATED        1      2      0
  AMP PEAK 22(6P21.31) WILD-TYPE    275    152     69
D21V2, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            2                            152
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(6P21.31) MUTATED        0      1      1      0
  AMP PEAK 22(6P21.31) WILD-TYPE     64     63     41     49
D21V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 22(6P21.31) MUTATED"
clus
  AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q2                     TCGA-DJ-A2Q4 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q5                     TCGA-DJ-A2Q6 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q7                     TCGA-DJ-A2Q8 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q9                     TCGA-DJ-A2QA 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2QB                     TCGA-DJ-A2QC 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DO-A1JZ                     TCGA-DO-A1K0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E3-A3DY                     TCGA-E3-A3DZ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E3-A3E0                     TCGA-E3-A3E1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E3-A3E3                     TCGA-E3-A3E5 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E8-A2EA                     TCGA-EL-A3CL 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CM                     TCGA-EL-A3CN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CO                     TCGA-EL-A3CP 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CR                     TCGA-EL-A3CS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CT                     TCGA-EL-A3CU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CV                     TCGA-EL-A3CW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CX                     TCGA-EL-A3CY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CZ                     TCGA-EL-A3D0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3D1                     TCGA-EL-A3D4 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3D5                     TCGA-EL-A3D6 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GO                     TCGA-EL-A3GP 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GQ                     TCGA-EL-A3GR 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GS                     TCGA-EL-A3GU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GV                     TCGA-EL-A3GW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GX                     TCGA-EL-A3GY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GZ                     TCGA-EL-A3H1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3H2                     TCGA-EL-A3H3 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3H4                     TCGA-EL-A3H5 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3H7                     TCGA-EL-A3H8 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3MW                     TCGA-EL-A3MX 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3MY                     TCGA-EL-A3MZ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3N2                     TCGA-EL-A3N3 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1CT                     TCGA-EM-A1CU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1CV                     TCGA-EM-A1CW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1YA                     TCGA-EM-A1YB 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1YC                     TCGA-EM-A1YD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39N 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39P                     TCGA-ET-A39R 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39T                     TCGA-ET-A3BN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BP                     TCGA-ET-A3BS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BT                     TCGA-ET-A3BU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BV                     TCGA-ET-A3BW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BX                     TCGA-ET-A3DO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3DP                     TCGA-ET-A3DS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3DT                     TCGA-ET-A3DV 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3DW                     TCGA-FE-A22Z 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A230                     TCGA-FE-A231 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A232                     TCGA-FE-A233 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A234                     TCGA-FE-A235 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A236                     TCGA-FE-A237 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 22(6P21.31) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(6P21.31) MUTATED        0      0      0      1      0      1
  AMP PEAK 22(6P21.31) WILD-TYPE     46     28     33     28     47     26
                                vv
clus                             CLUS_7
  AMP PEAK 22(6P21.31) MUTATED        0
  AMP PEAK 22(6P21.31) WILD-TYPE      9
D21V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 22(6P21.31) MUTATED"
clus
  AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q2                     TCGA-DJ-A2Q4 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q5                     TCGA-DJ-A2Q6 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q7                     TCGA-DJ-A2Q8 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2Q9                     TCGA-DJ-A2QA 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DJ-A2QB                     TCGA-DJ-A2QC 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-DO-A1JZ                     TCGA-DO-A1K0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E3-A3DY                     TCGA-E3-A3DZ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E3-A3E0                     TCGA-E3-A3E1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E3-A3E3                     TCGA-E3-A3E5 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-E8-A2EA                     TCGA-EL-A3CL 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CM                     TCGA-EL-A3CN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CO                     TCGA-EL-A3CP 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CR                     TCGA-EL-A3CS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CT                     TCGA-EL-A3CU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CV                     TCGA-EL-A3CW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CX                     TCGA-EL-A3CY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3CZ                     TCGA-EL-A3D0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3D1                     TCGA-EL-A3D4 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3D5                     TCGA-EL-A3D6 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GO                     TCGA-EL-A3GP 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GQ                     TCGA-EL-A3GR 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GS                     TCGA-EL-A3GU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GV                     TCGA-EL-A3GW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GX                     TCGA-EL-A3GY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3GZ                     TCGA-EL-A3H1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3H2                     TCGA-EL-A3H3 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3H4                     TCGA-EL-A3H5 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3H7                     TCGA-EL-A3H8 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3MW                     TCGA-EL-A3MX 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3MY                     TCGA-EL-A3MZ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EL-A3N2                     TCGA-EL-A3N3 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1CT                     TCGA-EM-A1CU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1CV                     TCGA-EM-A1CW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1YA                     TCGA-EM-A1YB 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1YC                     TCGA-EM-A1YD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39N 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39P                     TCGA-ET-A39R 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A39T                     TCGA-ET-A3BN 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BP                     TCGA-ET-A3BS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BT                     TCGA-ET-A3BU 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BV                     TCGA-ET-A3BW 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3BX                     TCGA-ET-A3DO 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3DP                     TCGA-ET-A3DS 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3DT                     TCGA-ET-A3DV 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-ET-A3DW                     TCGA-FE-A22Z 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A230                     TCGA-FE-A231 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A232                     TCGA-FE-A233 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A234                     TCGA-FE-A235 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A236                     TCGA-FE-A237 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 22(6P21.31) WILD-TYPE" "AMP PEAK 22(6P21.31) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 22(6P21.31) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(6P21.31) MUTATED        1      2      0      0
  AMP PEAK 22(6P21.31) WILD-TYPE    167    153     58    116
D21V5, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            2                            153
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(6P21.31) MUTATED        0      2      0      0      1
  AMP PEAK 22(6P21.31) WILD-TYPE    104    132     86     95     77
D21V6, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            2                            132
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(6P21.31) MUTATED        0      2      1
  AMP PEAK 22(6P21.31) WILD-TYPE    181    149    165
D21V7, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            0                            181
  CLUS_2                            2                            149
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(6P21.31) MUTATED        0      2      1
  AMP PEAK 22(6P21.31) WILD-TYPE    178    126    191
D21V8, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            2                            126
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(6P21.31) MUTATED        0      3      0
  AMP PEAK 22(6P21.31) WILD-TYPE    159    161    145
D21V9, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            0                            159
  CLUS_2                            3                            161
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(6P21.31) MUTATED        0      2      1
  AMP PEAK 22(6P21.31) WILD-TYPE    164    124    177
D21V10, multiclass
        clus
vv       AMP PEAK 22(6P21.31) MUTATED AMP PEAK 22(6P21.31) WILD-TYPE
  CLUS_1                            0                            164
  CLUS_2                            2                            124
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 23(6P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(6P21.2) MUTATED        2      2      0
  AMP PEAK 23(6P21.2) WILD-TYPE     54    358     83
D22V1, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(6P21.2) MUTATED        2      2      0
  AMP PEAK 23(6P21.2) WILD-TYPE    274    152     69
D22V2, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           2                           152
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(6P21.2) MUTATED        0      2      1      0
  AMP PEAK 23(6P21.2) WILD-TYPE     64     62     41     49
D22V3, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           0                            64
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(6P21.2) MUTATED        0      0      1      1      0      1
  AMP PEAK 23(6P21.2) WILD-TYPE     46     28     32     28     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 23(6P21.2) MUTATED        0
  AMP PEAK 23(6P21.2) WILD-TYPE      9
D22V4, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           0                            28
  CLUS_3                           1                            32
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(6P21.2) MUTATED        2      2      0      0
  AMP PEAK 23(6P21.2) WILD-TYPE    166    153     58    116
D22V5, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                           2                           153
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(6P21.2) MUTATED        1      2      0      0      1
  AMP PEAK 23(6P21.2) WILD-TYPE    103    132     86     95     77
D22V6, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           2                           132
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(6P21.2) MUTATED        1      3      0
  AMP PEAK 23(6P21.2) WILD-TYPE    180    148    166
D22V7, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           1                           180
  CLUS_2                           3                           148
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(6P21.2) MUTATED        1      2      1
  AMP PEAK 23(6P21.2) WILD-TYPE    177    126    191
D22V8, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           1                           177
  CLUS_2                           2                           126
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(6P21.2) MUTATED        1      2      0
  AMP PEAK 23(6P21.2) WILD-TYPE    158    162    145
D22V9, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           2                           162
  CLUS_3                           0                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(6P21.2) MUTATED        1      2      0
  AMP PEAK 23(6P21.2) WILD-TYPE    163    124    178
D22V10, multiclass
        clus
vv       AMP PEAK 23(6P21.2) MUTATED AMP PEAK 23(6P21.2) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           2                           124
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 24(6P12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(6P12.2) MUTATED        2      1      0
  AMP PEAK 24(6P12.2) WILD-TYPE     54    359     83
D23V1, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(6P12.2) MUTATED        1      2      0
  AMP PEAK 24(6P12.2) WILD-TYPE    275    152     69
D23V2, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           2                           152
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(6P12.2) MUTATED        0      1      1      0
  AMP PEAK 24(6P12.2) WILD-TYPE     64     63     41     49
D23V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 24(6P12.2) MUTATED"
clus
  AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q4 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q5                    TCGA-DJ-A2Q6 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q7                    TCGA-DJ-A2Q8 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q9                    TCGA-DJ-A2QA 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2QB                    TCGA-DJ-A2QC 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E3-A3DY                    TCGA-E3-A3DZ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E3-A3E0                    TCGA-E3-A3E1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E8-A2EA                    TCGA-EL-A3CL 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BT                    TCGA-ET-A3BU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK 24(6P12.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(6P12.2) MUTATED        0      0      0      1      0      1
  AMP PEAK 24(6P12.2) WILD-TYPE     46     28     33     28     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 24(6P12.2) MUTATED        0
  AMP PEAK 24(6P12.2) WILD-TYPE      9
D23V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 24(6P12.2) MUTATED"
clus
  AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q2                    TCGA-DJ-A2Q4 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q5                    TCGA-DJ-A2Q6 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q7                    TCGA-DJ-A2Q8 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2Q9                    TCGA-DJ-A2QA 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DJ-A2QB                    TCGA-DJ-A2QC 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-DO-A1JZ                    TCGA-DO-A1K0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E3-A3DY                    TCGA-E3-A3DZ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E3-A3E0                    TCGA-E3-A3E1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E3-A3E3                    TCGA-E3-A3E5 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-E8-A2EA                    TCGA-EL-A3CL 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39N 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39P                    TCGA-ET-A39R 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A39T                    TCGA-ET-A3BN 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BP                    TCGA-ET-A3BS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BT                    TCGA-ET-A3BU 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BV                    TCGA-ET-A3BW 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3BX                    TCGA-ET-A3DO 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3DP                    TCGA-ET-A3DS 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3DT                    TCGA-ET-A3DV 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-ET-A3DW                    TCGA-FE-A22Z 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A230                    TCGA-FE-A231 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A232                    TCGA-FE-A233 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A234                    TCGA-FE-A235 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A236                    TCGA-FE-A237 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"AMP PEAK 24(6P12.2) WILD-TYPE" "AMP PEAK 24(6P12.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"AMP PEAK 24(6P12.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(6P12.2) MUTATED        1      2      0      0
  AMP PEAK 24(6P12.2) WILD-TYPE    167    153     58    116
D23V5, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           2                           153
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(6P12.2) MUTATED        1      2      0      0      0
  AMP PEAK 24(6P12.2) WILD-TYPE    103    132     86     95     78
D23V6, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           2                           132
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(6P12.2) MUTATED        0      2      1
  AMP PEAK 24(6P12.2) WILD-TYPE    181    149    165
D23V7, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                           2                           149
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(6P12.2) MUTATED        0      2      1
  AMP PEAK 24(6P12.2) WILD-TYPE    178    126    191
D23V8, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                           2                           126
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(6P12.2) MUTATED        0      3      0
  AMP PEAK 24(6P12.2) WILD-TYPE    159    161    145
D23V9, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           0                           159
  CLUS_2                           3                           161
  CLUS_3                           0                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(6P12.2) MUTATED        0      2      1
  AMP PEAK 24(6P12.2) WILD-TYPE    164    124    177
D23V10, multiclass
        clus
vv       AMP PEAK 24(6P12.2) MUTATED AMP PEAK 24(6P12.2) WILD-TYPE
  CLUS_1                           0                           164
  CLUS_2                           2                           124
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 25(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(6Q12) MUTATED        1      2      0
  AMP PEAK 25(6Q12) WILD-TYPE     55    358     83
D24V1, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         1                          55
  CLUS_2                         2                         358
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(6Q12) MUTATED        0      2      1
  AMP PEAK 25(6Q12) WILD-TYPE    276    152     68
D24V2, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         0                         276
  CLUS_2                         2                         152
  CLUS_3                         1                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(6Q12) MUTATED        0      1      0      0
  AMP PEAK 25(6Q12) WILD-TYPE     64     63     42     49
D24V3, multiclass
[1] "Remove cluster labels:"    "AMP PEAK 25(6Q12) MUTATED"
clus
  AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE 
                          1                         218 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q2                  TCGA-DJ-A2Q4 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q5                  TCGA-DJ-A2Q6 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q7                  TCGA-DJ-A2Q8 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-EL-A3CL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 25(6Q12) MUTATED        0      0      0      0      0      1      0
  AMP PEAK 25(6Q12) WILD-TYPE     46     28     33     29     47     26      9
D24V4, multiclass
[1] "Remove cluster labels:"    "AMP PEAK 25(6Q12) MUTATED"
clus
  AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE 
                          1                         218 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q2                  TCGA-DJ-A2Q4 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q5                  TCGA-DJ-A2Q6 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q7                  TCGA-DJ-A2Q8 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-EL-A3CL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"AMP PEAK 25(6Q12) WILD-TYPE" "AMP PEAK 25(6Q12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(6Q12) MUTATED        0      2      1      0
  AMP PEAK 25(6Q12) WILD-TYPE    168    153     57    116
D24V5, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         0                         168
  CLUS_2                         2                         153
  CLUS_3                         1                          57
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(6Q12) MUTATED        0      1      1      0      1
  AMP PEAK 25(6Q12) WILD-TYPE    104    133     85     95     77
D24V6, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         1                         133
  CLUS_3                         1                          85
  CLUS_4                         0                          95
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(6Q12) MUTATED        1      1      1
  AMP PEAK 25(6Q12) WILD-TYPE    180    150    165
D24V7, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         1                         180
  CLUS_2                         1                         150
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(6Q12) MUTATED        1      1      1
  AMP PEAK 25(6Q12) WILD-TYPE    177    127    191
D24V8, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         1                         177
  CLUS_2                         1                         127
  CLUS_3                         1                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(6Q12) MUTATED        1      1      1
  AMP PEAK 25(6Q12) WILD-TYPE    158    163    144
D24V9, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         1                         158
  CLUS_2                         1                         163
  CLUS_3                         1                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(6Q12) MUTATED        1      1      1
  AMP PEAK 25(6Q12) WILD-TYPE    163    125    177
D24V10, multiclass
        clus
vv       AMP PEAK 25(6Q12) MUTATED AMP PEAK 25(6Q12) WILD-TYPE
  CLUS_1                         1                         163
  CLUS_2                         1                         125
  CLUS_3                         1                         177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 26(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(6Q27) MUTATED        2      2      0
  AMP PEAK 26(6Q27) WILD-TYPE     54    358     83
D25V1, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         2                          54
  CLUS_2                         2                         358
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(6Q27) MUTATED        1      3      0
  AMP PEAK 26(6Q27) WILD-TYPE    275    151     69
D25V2, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         275
  CLUS_2                         3                         151
  CLUS_3                         0                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(6Q27) MUTATED        0      3      1      0
  AMP PEAK 26(6Q27) WILD-TYPE     64     61     41     49
D25V3, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         0                          64
  CLUS_2                         3                          61
  CLUS_3                         1                          41
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(6Q27) MUTATED        0      0      0      1      0      3      0
  AMP PEAK 26(6Q27) WILD-TYPE     46     28     33     28     47     24      9
D25V4, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         0                          46
  CLUS_2                         0                          28
  CLUS_3                         0                          33
  CLUS_4                         1                          28
  CLUS_5                         0                          47
  CLUS_6                         3                          24
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(6Q27) MUTATED        1      3      0      0
  AMP PEAK 26(6Q27) WILD-TYPE    167    152     58    116
D25V5, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         167
  CLUS_2                         3                         152
  CLUS_3                         0                          58
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(6Q27) MUTATED        1      3      0      0      0
  AMP PEAK 26(6Q27) WILD-TYPE    103    131     86     95     78
D25V6, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         103
  CLUS_2                         3                         131
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(6Q27) MUTATED        1      3      0
  AMP PEAK 26(6Q27) WILD-TYPE    180    148    166
D25V7, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         180
  CLUS_2                         3                         148
  CLUS_3                         0                         166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(6Q27) MUTATED        1      3      0
  AMP PEAK 26(6Q27) WILD-TYPE    177    125    192
D25V8, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         177
  CLUS_2                         3                         125
  CLUS_3                         0                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(6Q27) MUTATED        1      1      2
  AMP PEAK 26(6Q27) WILD-TYPE    158    163    143
D25V9, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         158
  CLUS_2                         1                         163
  CLUS_3                         2                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(6Q27) MUTATED        1      3      0
  AMP PEAK 26(6Q27) WILD-TYPE    163    123    178
D25V10, multiclass
        clus
vv       AMP PEAK 26(6Q27) MUTATED AMP PEAK 26(6Q27) WILD-TYPE
  CLUS_1                         1                         163
  CLUS_2                         3                         123
  CLUS_3                         0                         178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 27(7Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(7Q11.21) MUTATED       18      2      0
  AMP PEAK 27(7Q11.21) WILD-TYPE     38    358     83
D26V1, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                           18                             38
  CLUS_2                            2                            358
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(7Q11.21) MUTATED        3     15      2
  AMP PEAK 27(7Q11.21) WILD-TYPE    273    139     67
D26V2, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            3                            273
  CLUS_2                           15                            139
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(7Q11.21) MUTATED        3      6      2      0
  AMP PEAK 27(7Q11.21) WILD-TYPE     61     58     40     49
D26V3, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            6                             58
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(7Q11.21) MUTATED        3      1      0      2      0      5
  AMP PEAK 27(7Q11.21) WILD-TYPE     43     27     33     27     47     22
                                vv
clus                             CLUS_7
  AMP PEAK 27(7Q11.21) MUTATED        0
  AMP PEAK 27(7Q11.21) WILD-TYPE      9
D26V4, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            0                             47
  CLUS_6                            5                             22
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(7Q11.21) MUTATED        3     15      1      1
  AMP PEAK 27(7Q11.21) WILD-TYPE    165    140     57    115
D26V5, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            3                            165
  CLUS_2                           15                            140
  CLUS_3                            1                             57
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(7Q11.21) MUTATED        2     15      1      1      1
  AMP PEAK 27(7Q11.21) WILD-TYPE    102    119     85     94     77
D26V6, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                           15                            119
  CLUS_3                            1                             85
  CLUS_4                            1                             94
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(7Q11.21) MUTATED        5     13      2
  AMP PEAK 27(7Q11.21) WILD-TYPE    176    138    164
D26V7, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            5                            176
  CLUS_2                           13                            138
  CLUS_3                            2                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(7Q11.21) MUTATED        5     13      2
  AMP PEAK 27(7Q11.21) WILD-TYPE    173    115    190
D26V8, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            5                            173
  CLUS_2                           13                            115
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(7Q11.21) MUTATED        6      8      3
  AMP PEAK 27(7Q11.21) WILD-TYPE    153    156    142
D26V9, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            6                            153
  CLUS_2                            8                            156
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(7Q11.21) MUTATED        6      9      2
  AMP PEAK 27(7Q11.21) WILD-TYPE    158    117    176
D26V10, multiclass
        clus
vv       AMP PEAK 27(7Q11.21) MUTATED AMP PEAK 27(7Q11.21) WILD-TYPE
  CLUS_1                            6                            158
  CLUS_2                            9                            117
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 28(7Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(7Q21.11) MUTATED       20      1      0
  AMP PEAK 28(7Q21.11) WILD-TYPE     36    359     83
D27V1, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                           20                             36
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(7Q21.11) MUTATED        4     15      2
  AMP PEAK 28(7Q21.11) WILD-TYPE    272    139     67
D27V2, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            4                            272
  CLUS_2                           15                            139
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(7Q21.11) MUTATED        4      5      2      0
  AMP PEAK 28(7Q21.11) WILD-TYPE     60     59     40     49
D27V3, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            4                             60
  CLUS_2                            5                             59
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(7Q21.11) MUTATED        3      2      0      2      0      4
  AMP PEAK 28(7Q21.11) WILD-TYPE     43     26     33     27     47     23
                                vv
clus                             CLUS_7
  AMP PEAK 28(7Q21.11) MUTATED        0
  AMP PEAK 28(7Q21.11) WILD-TYPE      9
D27V4, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            2                             26
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            0                             47
  CLUS_6                            4                             23
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(7Q21.11) MUTATED        3     15      1      2
  AMP PEAK 28(7Q21.11) WILD-TYPE    165    140     57    114
D27V5, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            3                            165
  CLUS_2                           15                            140
  CLUS_3                            1                             57
  CLUS_4                            2                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(7Q21.11) MUTATED        2     15      1      2      1
  AMP PEAK 28(7Q21.11) WILD-TYPE    102    119     85     93     77
D27V6, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                           15                            119
  CLUS_3                            1                             85
  CLUS_4                            2                             93
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(7Q21.11) MUTATED        5     14      2
  AMP PEAK 28(7Q21.11) WILD-TYPE    176    137    164
D27V7, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            5                            176
  CLUS_2                           14                            137
  CLUS_3                            2                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(7Q21.11) MUTATED        5     14      2
  AMP PEAK 28(7Q21.11) WILD-TYPE    173    114    190
D27V8, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            5                            173
  CLUS_2                           14                            114
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(7Q21.11) MUTATED        5      9      4
  AMP PEAK 28(7Q21.11) WILD-TYPE    154    155    141
D27V9, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            5                            154
  CLUS_2                            9                            155
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(7Q21.11) MUTATED        5     11      2
  AMP PEAK 28(7Q21.11) WILD-TYPE    159    115    176
D27V10, multiclass
        clus
vv       AMP PEAK 28(7Q21.11) MUTATED AMP PEAK 28(7Q21.11) WILD-TYPE
  CLUS_1                            5                            159
  CLUS_2                           11                            115
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 29(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(7Q31.1) MUTATED       19      2      1
  AMP PEAK 29(7Q31.1) WILD-TYPE     37    358     82
D28V1, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                          19                            37
  CLUS_2                           2                           358
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(7Q31.1) MUTATED        2     18      2
  AMP PEAK 29(7Q31.1) WILD-TYPE    274    136     67
D28V2, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                          18                           136
  CLUS_3                           2                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(7Q31.1) MUTATED        5      6      2      0
  AMP PEAK 29(7Q31.1) WILD-TYPE     59     58     40     49
D28V3, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           6                            58
  CLUS_3                           2                            40
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(7Q31.1) MUTATED        5      1      0      2      0      5
  AMP PEAK 29(7Q31.1) WILD-TYPE     41     27     33     27     47     22
                               vv
clus                            CLUS_7
  AMP PEAK 29(7Q31.1) MUTATED        0
  AMP PEAK 29(7Q31.1) WILD-TYPE      9
D28V4, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           5                            41
  CLUS_2                           1                            27
  CLUS_3                           0                            33
  CLUS_4                           2                            27
  CLUS_5                           0                            47
  CLUS_6                           5                            22
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(7Q31.1) MUTATED        3     17      1      1
  AMP PEAK 29(7Q31.1) WILD-TYPE    165    138     57    115
D28V5, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           3                           165
  CLUS_2                          17                           138
  CLUS_3                           1                            57
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(7Q31.1) MUTATED        2     17      1      1      1
  AMP PEAK 29(7Q31.1) WILD-TYPE    102    117     85     94     77
D28V6, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                          17                           117
  CLUS_3                           1                            85
  CLUS_4                           1                            94
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(7Q31.1) MUTATED        5     16      1
  AMP PEAK 29(7Q31.1) WILD-TYPE    176    135    165
D28V7, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           5                           176
  CLUS_2                          16                           135
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(7Q31.1) MUTATED        5     16      1
  AMP PEAK 29(7Q31.1) WILD-TYPE    173    112    191
D28V8, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           5                           173
  CLUS_2                          16                           112
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(7Q31.1) MUTATED        5      8      6
  AMP PEAK 29(7Q31.1) WILD-TYPE    154    156    139
D28V9, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           5                           154
  CLUS_2                           8                           156
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(7Q31.1) MUTATED        6     12      1
  AMP PEAK 29(7Q31.1) WILD-TYPE    158    114    177
D28V10, multiclass
        clus
vv       AMP PEAK 29(7Q31.1) MUTATED AMP PEAK 29(7Q31.1) WILD-TYPE
  CLUS_1                           6                           158
  CLUS_2                          12                           114
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 30(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(7Q34) MUTATED       19      2      1
  AMP PEAK 30(7Q34) WILD-TYPE     37    358     82
D29V1, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                        19                          37
  CLUS_2                         2                         358
  CLUS_3                         1                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(7Q34) MUTATED        3     16      3
  AMP PEAK 30(7Q34) WILD-TYPE    273    138     66
D29V2, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         3                         273
  CLUS_2                        16                         138
  CLUS_3                         3                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(7Q34) MUTATED        4      6      3      0
  AMP PEAK 30(7Q34) WILD-TYPE     60     58     39     49
D29V3, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         4                          60
  CLUS_2                         6                          58
  CLUS_3                         3                          39
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 30(7Q34) MUTATED        4      1      0      2      0      6      0
  AMP PEAK 30(7Q34) WILD-TYPE     42     27     33     27     47     21      9
D29V4, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         4                          42
  CLUS_2                         1                          27
  CLUS_3                         0                          33
  CLUS_4                         2                          27
  CLUS_5                         0                          47
  CLUS_6                         6                          21
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(7Q34) MUTATED        3     16      2      1
  AMP PEAK 30(7Q34) WILD-TYPE    165    139     56    115
D29V5, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         3                         165
  CLUS_2                        16                         139
  CLUS_3                         2                          56
  CLUS_4                         1                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(7Q34) MUTATED        2     16      2      1      1
  AMP PEAK 30(7Q34) WILD-TYPE    102    118     84     94     77
D29V6, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         2                         102
  CLUS_2                        16                         118
  CLUS_3                         2                          84
  CLUS_4                         1                          94
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(7Q34) MUTATED        4     17      1
  AMP PEAK 30(7Q34) WILD-TYPE    177    134    165
D29V7, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         4                         177
  CLUS_2                        17                         134
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(7Q34) MUTATED        4     17      1
  AMP PEAK 30(7Q34) WILD-TYPE    174    111    191
D29V8, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         4                         174
  CLUS_2                        17                         111
  CLUS_3                         1                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(7Q34) MUTATED        5      9      5
  AMP PEAK 30(7Q34) WILD-TYPE    154    155    140
D29V9, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         5                         154
  CLUS_2                         9                         155
  CLUS_3                         5                         140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(7Q34) MUTATED        5     11      3
  AMP PEAK 30(7Q34) WILD-TYPE    159    115    175
D29V10, multiclass
        clus
vv       AMP PEAK 30(7Q34) MUTATED AMP PEAK 30(7Q34) WILD-TYPE
  CLUS_1                         5                         159
  CLUS_2                        11                         115
  CLUS_3                         3                         175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 31(9Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(9Q22.31) MUTATED        3      2      1
  AMP PEAK 31(9Q22.31) WILD-TYPE     53    358     82
D30V1, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                            2                            358
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(9Q22.31) MUTATED        4      2      0
  AMP PEAK 31(9Q22.31) WILD-TYPE    272    152     69
D30V2, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            4                            272
  CLUS_2                            2                            152
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(9Q22.31) MUTATED        1      0      0      2
  AMP PEAK 31(9Q22.31) WILD-TYPE     63     64     42     47
D30V3, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            0                             64
  CLUS_3                            0                             42
  CLUS_4                            2                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(9Q22.31) MUTATED        1      0      0      0      2      0
  AMP PEAK 31(9Q22.31) WILD-TYPE     45     28     33     29     45     27
                                vv
clus                             CLUS_7
  AMP PEAK 31(9Q22.31) MUTATED        0
  AMP PEAK 31(9Q22.31) WILD-TYPE      9
D30V4, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            2                             45
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(9Q22.31) MUTATED        2      2      0      2
  AMP PEAK 31(9Q22.31) WILD-TYPE    166    153     58    114
D30V5, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            2                            166
  CLUS_2                            2                            153
  CLUS_3                            0                             58
  CLUS_4                            2                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(9Q22.31) MUTATED        1      2      0      3      0
  AMP PEAK 31(9Q22.31) WILD-TYPE    103    132     86     92     78
D30V6, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            2                            132
  CLUS_3                            0                             86
  CLUS_4                            3                             92
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(9Q22.31) MUTATED        2      1      3
  AMP PEAK 31(9Q22.31) WILD-TYPE    179    150    163
D30V7, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                            1                            150
  CLUS_3                            3                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(9Q22.31) MUTATED        2      1      3
  AMP PEAK 31(9Q22.31) WILD-TYPE    176    127    189
D30V8, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                            1                            127
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(9Q22.31) MUTATED        4      0      1
  AMP PEAK 31(9Q22.31) WILD-TYPE    155    164    144
D30V9, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            4                            155
  CLUS_2                            0                            164
  CLUS_3                            1                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(9Q22.31) MUTATED        3      0      2
  AMP PEAK 31(9Q22.31) WILD-TYPE    161    126    176
D30V10, multiclass
        clus
vv       AMP PEAK 31(9Q22.31) MUTATED AMP PEAK 31(9Q22.31) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            0                            126
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 32(9Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(9Q31.1) MUTATED        3      2      1
  AMP PEAK 32(9Q31.1) WILD-TYPE     53    358     82
D31V1, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           2                           358
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(9Q31.1) MUTATED        2      3      1
  AMP PEAK 32(9Q31.1) WILD-TYPE    274    151     68
D31V2, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           3                           151
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(9Q31.1) MUTATED        2      0      0      1
  AMP PEAK 32(9Q31.1) WILD-TYPE     62     64     42     48
D31V3, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           0                            64
  CLUS_3                           0                            42
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(9Q31.1) MUTATED        2      0      0      0      1      0
  AMP PEAK 32(9Q31.1) WILD-TYPE     44     28     33     29     46     27
                               vv
clus                            CLUS_7
  AMP PEAK 32(9Q31.1) MUTATED        0
  AMP PEAK 32(9Q31.1) WILD-TYPE      9
D31V4, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           0                            29
  CLUS_5                           1                            46
  CLUS_6                           0                            27
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(9Q31.1) MUTATED        1      3      1      1
  AMP PEAK 32(9Q31.1) WILD-TYPE    167    152     57    115
D31V5, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           3                           152
  CLUS_3                           1                            57
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(9Q31.1) MUTATED        0      3      1      2      0
  AMP PEAK 32(9Q31.1) WILD-TYPE    104    131     85     93     78
D31V6, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           3                           131
  CLUS_3                           1                            85
  CLUS_4                           2                            93
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(9Q31.1) MUTATED        2      2      2
  AMP PEAK 32(9Q31.1) WILD-TYPE    179    149    164
D31V7, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           2                           149
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(9Q31.1) MUTATED        2      2      2
  AMP PEAK 32(9Q31.1) WILD-TYPE    176    126    190
D31V8, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           2                           126
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(9Q31.1) MUTATED        4      1      1
  AMP PEAK 32(9Q31.1) WILD-TYPE    155    163    144
D31V9, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           4                           155
  CLUS_2                           1                           163
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(9Q31.1) MUTATED        3      1      2
  AMP PEAK 32(9Q31.1) WILD-TYPE    161    125    176
D31V10, multiclass
        clus
vv       AMP PEAK 32(9Q31.1) MUTATED AMP PEAK 32(9Q31.1) WILD-TYPE
  CLUS_1                           3                           161
  CLUS_2                           1                           125
  CLUS_3                           2                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 33(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(9Q34.3) MUTATED        3      3      1
  AMP PEAK 33(9Q34.3) WILD-TYPE     53    357     82
D32V1, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           3                           357
  CLUS_3                           1                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(9Q34.3) MUTATED        3      4      0
  AMP PEAK 33(9Q34.3) WILD-TYPE    273    150     69
D32V2, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           3                           273
  CLUS_2                           4                           150
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(9Q34.3) MUTATED        2      1      1      1
  AMP PEAK 33(9Q34.3) WILD-TYPE     62     63     41     48
D32V3, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           1                            63
  CLUS_3                           1                            41
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(9Q34.3) MUTATED        2      0      0      1      1      1
  AMP PEAK 33(9Q34.3) WILD-TYPE     44     28     33     28     46     26
                               vv
clus                            CLUS_7
  AMP PEAK 33(9Q34.3) MUTATED        0
  AMP PEAK 33(9Q34.3) WILD-TYPE      9
D32V4, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           1                            46
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(9Q34.3) MUTATED        2      4      0      1
  AMP PEAK 33(9Q34.3) WILD-TYPE    166    151     58    115
D32V5, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                           4                           151
  CLUS_3                           0                            58
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(9Q34.3) MUTATED        1      4      0      2      0
  AMP PEAK 33(9Q34.3) WILD-TYPE    103    130     86     93     78
D32V6, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           4                           130
  CLUS_3                           0                            86
  CLUS_4                           2                            93
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(9Q34.3) MUTATED        2      3      2
  AMP PEAK 33(9Q34.3) WILD-TYPE    179    148    164
D32V7, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           3                           148
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(9Q34.3) MUTATED        2      3      2
  AMP PEAK 33(9Q34.3) WILD-TYPE    176    125    190
D32V8, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           3                           125
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(9Q34.3) MUTATED        4      0      2
  AMP PEAK 33(9Q34.3) WILD-TYPE    155    164    143
D32V9, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           4                           155
  CLUS_2                           0                           164
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(9Q34.3) MUTATED        3      1      2
  AMP PEAK 33(9Q34.3) WILD-TYPE    161    125    176
D32V10, multiclass
        clus
vv       AMP PEAK 33(9Q34.3) MUTATED AMP PEAK 33(9Q34.3) WILD-TYPE
  CLUS_1                           3                           161
  CLUS_2                           1                           125
  CLUS_3                           2                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 34(10Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(10Q24.2) MUTATED        2      1      0
  AMP PEAK 34(10Q24.2) WILD-TYPE     54    359     83
D33V1, multiclass
        clus
vv       AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(10Q24.2) MUTATED        0      3      0
  AMP PEAK 34(10Q24.2) WILD-TYPE    276    151     69
D33V2, multiclass
        clus
vv       AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE
  CLUS_1                            0                            276
  CLUS_2                            3                            151
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(10Q24.2) MUTATED        1      1      0      0
  AMP PEAK 34(10Q24.2) WILD-TYPE     63     63     42     49
D33V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 34(10Q24.2) MUTATED"
clus
  AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(10Q24.2) MUTATED        1      0      0      0      0      1
  AMP PEAK 34(10Q24.2) WILD-TYPE     45     28     33     29     47     26
                                vv
clus                             CLUS_7
  AMP PEAK 34(10Q24.2) MUTATED        0
  AMP PEAK 34(10Q24.2) WILD-TYPE      9
D33V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 34(10Q24.2) MUTATED"
clus
  AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(10Q24.2) MUTATED        0      3      0      0
  AMP PEAK 34(10Q24.2) WILD-TYPE    168    152     58    116
D33V5, multiclass
        clus
vv       AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            3                            152
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(10Q24.2) MUTATED        0      3      0      0      0
  AMP PEAK 34(10Q24.2) WILD-TYPE    104    131     86     95     78
D33V6, multiclass
        clus
vv       AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            3                            131
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(10Q24.2) MUTATED        0      3      0
  AMP PEAK 34(10Q24.2) WILD-TYPE    181    148    166
D33V7, multiclass
        clus
vv       AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE
  CLUS_1                            0                            181
  CLUS_2                            3                            148
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(10Q24.2) MUTATED        0      3      0
  AMP PEAK 34(10Q24.2) WILD-TYPE    178    125    192
D33V8, multiclass
        clus
vv       AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            3                            125
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(10Q24.2) MUTATED        0      0      2
  AMP PEAK 34(10Q24.2) WILD-TYPE    159    164    143
D33V9, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 34(10Q24.2) MUTATED"
clus
  AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE 
                             2                            466 
                    TCGA-4C-A93U                     TCGA-BJ-A0YZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z0                     TCGA-BJ-A0Z2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z3                     TCGA-BJ-A0ZB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28X                     TCGA-BJ-A28Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A290                     TCGA-BJ-A291 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2N7                     TCGA-BJ-A2N8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-BJ-A3PR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A3PT                     TCGA-BJ-A3PU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45C                     TCGA-BJ-A45D 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45E                     TCGA-BJ-A45F 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45G                     TCGA-BJ-A45H 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45I                     TCGA-BJ-A45J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45K                     TCGA-BJ-A4O8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A4O9                     TCGA-CE-A27D 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A3MD                     TCGA-CE-A3ME 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A481                     TCGA-CE-A482 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A483                     TCGA-CE-A484 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A485                     TCGA-DE-A0XZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A0Y2                     TCGA-DE-A0Y3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A4M8                     TCGA-DE-A4M9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A4MA                     TCGA-DE-A4MB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A4MC                     TCGA-DE-A69J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A69K                     TCGA-DE-A7U5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13L                     TCGA-DJ-A13O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13P                     TCGA-DJ-A13R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13S                     TCGA-DJ-A13T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QI                     TCGA-DJ-A1QL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QM                     TCGA-DJ-A1QN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QO                     TCGA-DJ-A1QQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PT                     TCGA-DJ-A2PU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PV                     TCGA-DJ-A2PW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PX                     TCGA-DJ-A2PY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q3                     TCGA-DJ-A2Q4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q5                     TCGA-DJ-A2Q6 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q7                     TCGA-DJ-A2Q8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q9                     TCGA-DJ-A2QA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2QB                     TCGA-DJ-A2QC 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UK                     TCGA-DJ-A3UM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UN                     TCGA-DJ-A3UO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UP                     TCGA-DJ-A3UQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UR                     TCGA-DJ-A3UT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UU                     TCGA-DJ-A3UW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UX                     TCGA-DJ-A3UY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UZ                     TCGA-DJ-A3V0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3V2                     TCGA-DJ-A3V3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3V4                     TCGA-DJ-A3V5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3V8                     TCGA-DJ-A3V9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VA                     TCGA-DJ-A3VB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VD                     TCGA-DJ-A3VE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VF                     TCGA-DJ-A3VG 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VI                     TCGA-DJ-A3VJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VK                     TCGA-DJ-A3VL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VM                     TCGA-DJ-A4UL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4UP                     TCGA-DJ-A4UQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4UR                     TCGA-DJ-A4UT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4UW                     TCGA-DJ-A4V0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4V2                     TCGA-DJ-A4V4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4V5                     TCGA-DO-A1JZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-DO-A2HM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3DY                     TCGA-E3-A3DZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E0                     TCGA-E3-A3E1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E2                     TCGA-E3-A3E3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A242 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A2EA                     TCGA-E8-A3X7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A413                     TCGA-E8-A414 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A415                     TCGA-E8-A416 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A417                     TCGA-E8-A418 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A419                     TCGA-E8-A432 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A433                     TCGA-E8-A434 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A436                     TCGA-E8-A437 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A438                     TCGA-E8-A44K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A44M                     TCGA-EL-A3CL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CM                     TCGA-EL-A3CN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CO                     TCGA-EL-A3CP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CR                     TCGA-EL-A3CS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CT                     TCGA-EL-A3CU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CV                     TCGA-EL-A3CW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3D0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D1                     TCGA-EL-A3D5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GV                     TCGA-EL-A3GW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GX                     TCGA-EL-A3GY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GZ                     TCGA-EL-A3H1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H2                     TCGA-EL-A3H3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H4                     TCGA-EL-A3H5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H7                     TCGA-EL-A3H8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MW                     TCGA-EL-A3MX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MY                     TCGA-EL-A3MZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3N2                     TCGA-EL-A3N3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T0                     TCGA-EL-A3T1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T2                     TCGA-EL-A3T3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T6                     TCGA-EL-A3T7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T8                     TCGA-EL-A3T9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3TA                     TCGA-EL-A3TB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZG                     TCGA-EL-A3ZH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZK                     TCGA-EL-A3ZL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZM                     TCGA-EL-A3ZN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZO                     TCGA-EL-A3ZP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZQ                     TCGA-EL-A3ZR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZS                     TCGA-EL-A3ZT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4JV                     TCGA-EL-A4JW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4JX                     TCGA-EL-A4JZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K0                     TCGA-EL-A4K1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K2                     TCGA-EL-A4K4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K6                     TCGA-EL-A4K7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K9                     TCGA-EL-A4KD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4KG                     TCGA-EL-A4KH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4KI                     TCGA-EM-A1CS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22P 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CT                     TCGA-EM-A2CU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2OX                     TCGA-EM-A2OZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2P0                     TCGA-EM-A2P1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2P2                     TCGA-EM-A2P3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AK                     TCGA-EM-A3AL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3AQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AR                     TCGA-EM-A3FJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FK                     TCGA-EM-A3FM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-EM-A3FQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FR                     TCGA-EM-A3O3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3O6                     TCGA-EM-A3O7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3O8                     TCGA-EM-A3O9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3OA                     TCGA-EM-A3OB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3ST                     TCGA-EM-A3SU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3SZ                     TCGA-EM-A4FF 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FH                     TCGA-EM-A4FM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FN                     TCGA-EM-A4FO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FQ                     TCGA-EM-A4FR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FU                     TCGA-EM-A4FV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4G1                     TCGA-ET-A25G 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25J                     TCGA-ET-A25K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25N                     TCGA-ET-A25O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25P                     TCGA-ET-A25R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2MX                     TCGA-ET-A2MY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39K                     TCGA-ET-A39M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39P                     TCGA-ET-A39R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39S                     TCGA-ET-A39T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BP                     TCGA-ET-A3BQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BV                     TCGA-ET-A3BW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BX                     TCGA-ET-A3DO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DP                     TCGA-ET-A3DQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DR                     TCGA-ET-A3DS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DT                     TCGA-ET-A3DU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A40P 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A40Q                     TCGA-ET-A40R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A40S                     TCGA-ET-A40T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A4KN                     TCGA-ET-A4KQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A238 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A239                     TCGA-FE-A23A 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A3PA                     TCGA-FE-A3PB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A3PC                     TCGA-FE-A3PD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A3S3                     TCGA-FK-A3SB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A3SD                     TCGA-FK-A3SE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A3SG                     TCGA-FK-A3SH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A4UB                     TCGA-FY-A2QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3I4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3I5                     TCGA-FY-A3NM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3NN                     TCGA-FY-A3ON 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3R6                     TCGA-FY-A3R7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3R8                     TCGA-FY-A3R9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3RA                     TCGA-FY-A3TY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3W9                     TCGA-FY-A3WA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3YR                     TCGA-FY-A40K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A40L                     TCGA-FY-A40M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A40N                     TCGA-FY-A4B0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A4B3                     TCGA-FY-A4B4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A76V                     TCGA-GE-A2C6 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-H2-A26U                     TCGA-H2-A2K9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-H2-A3RH                     TCGA-H2-A3RI 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-H2-A421                     TCGA-H2-A422 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A3U2                     TCGA-IM-A3U3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A41Y                     TCGA-IM-A41Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A420                     TCGA-IM-A4EB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3O1                     TCGA-J8-A3O2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3YD                     TCGA-J8-A3YE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3YF                     TCGA-J8-A3YG 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3YH                     TCGA-J8-A42S 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A4HW                     TCGA-KS-A41F 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A41I                     TCGA-KS-A41J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4I1                     TCGA-KS-A4I3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4I5                     TCGA-KS-A4I7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4I9                     TCGA-KS-A4IC 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4ID                     TCGA-L6-A4EP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-L6-A4EQ                     TCGA-L6-A4ET 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-L6-A4EU                     TCGA-MK-A4N6 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-MK-A4N7                     TCGA-MK-A4N9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-MK-A84Z                     TCGA-QD-A8IV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(10Q24.2) MUTATED        0      2      0
  AMP PEAK 34(10Q24.2) WILD-TYPE    164    124    178
D33V10, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 34(10Q24.2) MUTATED"
clus
  AMP PEAK 34(10Q24.2) MUTATED AMP PEAK 34(10Q24.2) WILD-TYPE 
                             2                            466 
                    TCGA-4C-A93U                     TCGA-BJ-A0YZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z0                     TCGA-BJ-A0Z2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0Z3                     TCGA-BJ-A0ZB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A28X                     TCGA-BJ-A28Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A290                     TCGA-BJ-A291 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2N7                     TCGA-BJ-A2N8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-BJ-A3PR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A3PT                     TCGA-BJ-A3PU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45C                     TCGA-BJ-A45D 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45E                     TCGA-BJ-A45F 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45G                     TCGA-BJ-A45H 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45I                     TCGA-BJ-A45J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A45K                     TCGA-BJ-A4O8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-BJ-A4O9                     TCGA-CE-A27D 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A3MD                     TCGA-CE-A3ME 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A481                     TCGA-CE-A482 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A483                     TCGA-CE-A484 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-CE-A485                     TCGA-DE-A0XZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A0Y2                     TCGA-DE-A0Y3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A4M8                     TCGA-DE-A4M9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A4MA                     TCGA-DE-A4MB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A4MC                     TCGA-DE-A69J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DE-A69K                     TCGA-DE-A7U5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13L                     TCGA-DJ-A13O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13P                     TCGA-DJ-A13R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13S                     TCGA-DJ-A13T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QI                     TCGA-DJ-A1QL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QM                     TCGA-DJ-A1QN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A1QO                     TCGA-DJ-A1QQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PT                     TCGA-DJ-A2PU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PV                     TCGA-DJ-A2PW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PX                     TCGA-DJ-A2PY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q3                     TCGA-DJ-A2Q4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q5                     TCGA-DJ-A2Q6 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q7                     TCGA-DJ-A2Q8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2Q9                     TCGA-DJ-A2QA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A2QB                     TCGA-DJ-A2QC 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UK                     TCGA-DJ-A3UM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UN                     TCGA-DJ-A3UO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UP                     TCGA-DJ-A3UQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UR                     TCGA-DJ-A3UT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UU                     TCGA-DJ-A3UW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UX                     TCGA-DJ-A3UY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3UZ                     TCGA-DJ-A3V0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3V2                     TCGA-DJ-A3V3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3V4                     TCGA-DJ-A3V5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3V8                     TCGA-DJ-A3V9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VA                     TCGA-DJ-A3VB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VD                     TCGA-DJ-A3VE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VF                     TCGA-DJ-A3VG 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VI                     TCGA-DJ-A3VJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VK                     TCGA-DJ-A3VL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A3VM                     TCGA-DJ-A4UL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4UP                     TCGA-DJ-A4UQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4UR                     TCGA-DJ-A4UT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4UW                     TCGA-DJ-A4V0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4V2                     TCGA-DJ-A4V4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DJ-A4V5                     TCGA-DO-A1JZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-DO-A2HM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3DY                     TCGA-E3-A3DZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E0                     TCGA-E3-A3E1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E2                     TCGA-E3-A3E3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A242 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A2EA                     TCGA-E8-A3X7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A413                     TCGA-E8-A414 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A415                     TCGA-E8-A416 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A417                     TCGA-E8-A418 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A419                     TCGA-E8-A432 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A433                     TCGA-E8-A434 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A436                     TCGA-E8-A437 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A438                     TCGA-E8-A44K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-E8-A44M                     TCGA-EL-A3CL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CM                     TCGA-EL-A3CN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CO                     TCGA-EL-A3CP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CR                     TCGA-EL-A3CS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CT                     TCGA-EL-A3CU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CV                     TCGA-EL-A3CW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3D0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D1                     TCGA-EL-A3D5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GV                     TCGA-EL-A3GW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GX                     TCGA-EL-A3GY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3GZ                     TCGA-EL-A3H1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H2                     TCGA-EL-A3H3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H4                     TCGA-EL-A3H5 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3H7                     TCGA-EL-A3H8 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MW                     TCGA-EL-A3MX 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3MY                     TCGA-EL-A3MZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3N2                     TCGA-EL-A3N3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T0                     TCGA-EL-A3T1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T2                     TCGA-EL-A3T3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T6                     TCGA-EL-A3T7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3T8                     TCGA-EL-A3T9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3TA                     TCGA-EL-A3TB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZG                     TCGA-EL-A3ZH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZK                     TCGA-EL-A3ZL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZM                     TCGA-EL-A3ZN 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZO                     TCGA-EL-A3ZP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZQ                     TCGA-EL-A3ZR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A3ZS                     TCGA-EL-A3ZT 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4JV                     TCGA-EL-A4JW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4JX                     TCGA-EL-A4JZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K0                     TCGA-EL-A4K1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K2                     TCGA-EL-A4K4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K6                     TCGA-EL-A4K7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4K9                     TCGA-EL-A4KD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4KG                     TCGA-EL-A4KH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EL-A4KI                     TCGA-EM-A1CS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22P 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2CT                     TCGA-EM-A2CU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2OX                     TCGA-EM-A2OZ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2P0                     TCGA-EM-A2P1 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A2P2                     TCGA-EM-A2P3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AK                     TCGA-EM-A3AL 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3AQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3AR                     TCGA-EM-A3FJ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FK                     TCGA-EM-A3FM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-EM-A3FQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3FR                     TCGA-EM-A3O3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3O6                     TCGA-EM-A3O7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3O8                     TCGA-EM-A3O9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3OA                     TCGA-EM-A3OB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3ST                     TCGA-EM-A3SU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A3SZ                     TCGA-EM-A4FF 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FH                     TCGA-EM-A4FM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FN                     TCGA-EM-A4FO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FQ                     TCGA-EM-A4FR 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4FU                     TCGA-EM-A4FV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-EM-A4G1                     TCGA-ET-A25G 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25J                     TCGA-ET-A25K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25N                     TCGA-ET-A25O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A25P                     TCGA-ET-A25R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2MX                     TCGA-ET-A2MY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2MZ                     TCGA-ET-A2N0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39K                     TCGA-ET-A39M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39O 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39P                     TCGA-ET-A39R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A39S                     TCGA-ET-A39T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BP                     TCGA-ET-A3BQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BV                     TCGA-ET-A3BW 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3BX                     TCGA-ET-A3DO 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DP                     TCGA-ET-A3DQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DR                     TCGA-ET-A3DS 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DT                     TCGA-ET-A3DU 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A40P 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A40Q                     TCGA-ET-A40R 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A40S                     TCGA-ET-A40T 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-ET-A4KN                     TCGA-ET-A4KQ 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A238 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A239                     TCGA-FE-A23A 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A3PA                     TCGA-FE-A3PB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FE-A3PC                     TCGA-FE-A3PD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A3S3                     TCGA-FK-A3SB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A3SD                     TCGA-FK-A3SE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A3SG                     TCGA-FK-A3SH 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FK-A4UB                     TCGA-FY-A2QD 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3I4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3I5                     TCGA-FY-A3NM 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3NN                     TCGA-FY-A3ON 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3R6                     TCGA-FY-A3R7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3R8                     TCGA-FY-A3R9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3RA                     TCGA-FY-A3TY 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3W9                     TCGA-FY-A3WA 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A3YR                     TCGA-FY-A40K 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A40L                     TCGA-FY-A40M 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A40N                     TCGA-FY-A4B0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A4B3                     TCGA-FY-A4B4 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-FY-A76V                     TCGA-GE-A2C6 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-H2-A26U                     TCGA-H2-A2K9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-H2-A3RH                     TCGA-H2-A3RI 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-H2-A421                     TCGA-H2-A422 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A3U2                     TCGA-IM-A3U3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A41Y                     TCGA-IM-A41Z 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-IM-A420                     TCGA-IM-A4EB 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3O1                     TCGA-J8-A3O2 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3YD                     TCGA-J8-A3YE 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3YF                     TCGA-J8-A3YG 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A3YH                     TCGA-J8-A42S 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-J8-A4HW                     TCGA-KS-A41F 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A41I                     TCGA-KS-A41J 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4I1                     TCGA-KS-A4I3 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4I5                     TCGA-KS-A4I7 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4I9                     TCGA-KS-A4IC 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-KS-A4ID                     TCGA-L6-A4EP 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-L6-A4EQ                     TCGA-L6-A4ET 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-L6-A4EU                     TCGA-MK-A4N6 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-MK-A4N7                     TCGA-MK-A4N9 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 
                    TCGA-MK-A84Z                     TCGA-QD-A8IV 
"AMP PEAK 34(10Q24.2) WILD-TYPE" "AMP PEAK 34(10Q24.2) WILD-TYPE" 

Clustering(34) Variable = AMP PEAK 35(10Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(10Q25.1) MUTATED        3      1      0
  AMP PEAK 35(10Q25.1) WILD-TYPE     53    359     83
D34V1, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(10Q25.1) MUTATED        2      2      0
  AMP PEAK 35(10Q25.1) WILD-TYPE    274    152     69
D34V2, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            2                            274
  CLUS_2                            2                            152
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(10Q25.1) MUTATED        1      1      0      0
  AMP PEAK 35(10Q25.1) WILD-TYPE     63     63     42     49
D34V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 35(10Q25.1) MUTATED"
clus
  AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A2N0                     TCGA-ET-A2N1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A2N4                     TCGA-ET-A2N5 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39I                     TCGA-ET-A39J 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(10Q25.1) MUTATED        0      1      0      0      0      1
  AMP PEAK 35(10Q25.1) WILD-TYPE     46     27     33     29     47     26
                                vv
clus                             CLUS_7
  AMP PEAK 35(10Q25.1) MUTATED        0
  AMP PEAK 35(10Q25.1) WILD-TYPE      9
D34V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 35(10Q25.1) MUTATED"
clus
  AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A2OY                     TCGA-EM-A2P1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3AI                     TCGA-EM-A3AJ 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3AL                     TCGA-EM-A3AN 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3AO                     TCGA-EM-A3AP 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3FJ                     TCGA-EM-A3FL 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3FN                     TCGA-EM-A3FO 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-EM-A3FP                     TCGA-ET-A25G 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A25L                     TCGA-ET-A25M 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A25O                     TCGA-ET-A2MY 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A2N0                     TCGA-ET-A2N1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A2N4                     TCGA-ET-A2N5 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39I                     TCGA-ET-A39J 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 35(10Q25.1) WILD-TYPE" "AMP PEAK 35(10Q25.1) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 35(10Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(10Q25.1) MUTATED        1      2      0      1
  AMP PEAK 35(10Q25.1) WILD-TYPE    167    153     58    115
D34V5, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            2                            153
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(10Q25.1) MUTATED        1      2      0      1      0
  AMP PEAK 35(10Q25.1) WILD-TYPE    103    132     86     94     78
D34V6, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            2                            132
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(10Q25.1) MUTATED        1      2      1
  AMP PEAK 35(10Q25.1) WILD-TYPE    180    149    165
D34V7, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            2                            149
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(10Q25.1) MUTATED        1      2      1
  AMP PEAK 35(10Q25.1) WILD-TYPE    177    126    191
D34V8, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            2                            126
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(10Q25.1) MUTATED        1      1      1
  AMP PEAK 35(10Q25.1) WILD-TYPE    158    163    144
D34V9, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            1                            158
  CLUS_2                            1                            163
  CLUS_3                            1                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(10Q25.1) MUTATED        1      1      1
  AMP PEAK 35(10Q25.1) WILD-TYPE    163    125    177
D34V10, multiclass
        clus
vv       AMP PEAK 35(10Q25.1) MUTATED AMP PEAK 35(10Q25.1) WILD-TYPE
  CLUS_1                            1                            163
  CLUS_2                            1                            125
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 36(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(11P13) MUTATED        4      2      2
  AMP PEAK 36(11P13) WILD-TYPE     52    358     81
D35V1, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          4                           52
  CLUS_2                          2                          358
  CLUS_3                          2                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(11P13) MUTATED        2      5      1
  AMP PEAK 36(11P13) WILD-TYPE    274    149     68
D35V2, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          2                          274
  CLUS_2                          5                          149
  CLUS_3                          1                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(11P13) MUTATED        2      1      1      0
  AMP PEAK 36(11P13) WILD-TYPE     62     63     41     49
D35V3, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          2                           62
  CLUS_2                          1                           63
  CLUS_3                          1                           41
  CLUS_4                          0                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 36(11P13) MUTATED        0      2      0      1      0      1      0
  AMP PEAK 36(11P13) WILD-TYPE     46     26     33     28     47     26      9
D35V4, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          0                           46
  CLUS_2                          2                           26
  CLUS_3                          0                           33
  CLUS_4                          1                           28
  CLUS_5                          0                           47
  CLUS_6                          1                           26
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(11P13) MUTATED        0      5      1      2
  AMP PEAK 36(11P13) WILD-TYPE    168    150     57    114
D35V5, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          0                          168
  CLUS_2                          5                          150
  CLUS_3                          1                           57
  CLUS_4                          2                          114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(11P13) MUTATED        0      5      1      2      0
  AMP PEAK 36(11P13) WILD-TYPE    104    129     85     93     78
D35V6, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          0                          104
  CLUS_2                          5                          129
  CLUS_3                          1                           85
  CLUS_4                          2                           93
  CLUS_5                          0                           78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(11P13) MUTATED        1      5      2
  AMP PEAK 36(11P13) WILD-TYPE    180    146    164
D35V7, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          1                          180
  CLUS_2                          5                          146
  CLUS_3                          2                          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(11P13) MUTATED        1      5      2
  AMP PEAK 36(11P13) WILD-TYPE    177    123    190
D35V8, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          1                          177
  CLUS_2                          5                          123
  CLUS_3                          2                          190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(11P13) MUTATED        1      2      3
  AMP PEAK 36(11P13) WILD-TYPE    158    162    142
D35V9, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          1                          158
  CLUS_2                          2                          162
  CLUS_3                          3                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(11P13) MUTATED        1      3      2
  AMP PEAK 36(11P13) WILD-TYPE    163    123    176
D35V10, multiclass
        clus
vv       AMP PEAK 36(11P13) MUTATED AMP PEAK 36(11P13) WILD-TYPE
  CLUS_1                          1                          163
  CLUS_2                          3                          123
  CLUS_3                          2                          176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 37(12P11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(12P11.1) MUTATED       15      1      0
  AMP PEAK 37(12P11.1) WILD-TYPE     41    359     83
D36V1, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                           15                             41
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(12P11.1) MUTATED        2     14      0
  AMP PEAK 37(12P11.1) WILD-TYPE    274    140     69
D36V2, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            2                            274
  CLUS_2                           14                            140
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(12P11.1) MUTATED        3      5      2      0
  AMP PEAK 37(12P11.1) WILD-TYPE     61     59     40     49
D36V3, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            5                             59
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 37(12P11.1) MUTATED        3      1      1      2      0      3
  AMP PEAK 37(12P11.1) WILD-TYPE     43     27     32     27     47     24
                                vv
clus                             CLUS_7
  AMP PEAK 37(12P11.1) MUTATED        0
  AMP PEAK 37(12P11.1) WILD-TYPE      9
D36V4, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            1                             27
  CLUS_3                            1                             32
  CLUS_4                            2                             27
  CLUS_5                            0                             47
  CLUS_6                            3                             24
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(12P11.1) MUTATED        1     14      0      1
  AMP PEAK 37(12P11.1) WILD-TYPE    167    141     58    115
D36V5, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                           14                            141
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(12P11.1) MUTATED        1     14      0      1      0
  AMP PEAK 37(12P11.1) WILD-TYPE    103    120     86     94     78
D36V6, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                           14                            120
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(12P11.1) MUTATED        2     13      1
  AMP PEAK 37(12P11.1) WILD-TYPE    179    138    165
D36V7, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                           13                            138
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(12P11.1) MUTATED        2     13      1
  AMP PEAK 37(12P11.1) WILD-TYPE    176    115    191
D36V8, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                           13                            115
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(12P11.1) MUTATED        3      6      4
  AMP PEAK 37(12P11.1) WILD-TYPE    156    158    141
D36V9, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            6                            158
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(12P11.1) MUTATED        3      9      1
  AMP PEAK 37(12P11.1) WILD-TYPE    161    117    177
D36V10, multiclass
        clus
vv       AMP PEAK 37(12P11.1) MUTATED AMP PEAK 37(12P11.1) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            9                            117
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = AMP PEAK 38(12Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(12Q21.31) MUTATED       14      1      2
  AMP PEAK 38(12Q21.31) WILD-TYPE     42    359     81
D37V1, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                            14                              42
  CLUS_2                             1                             359
  CLUS_3                             2                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(12Q21.31) MUTATED        2     15      0
  AMP PEAK 38(12Q21.31) WILD-TYPE    274    139     69
D37V2, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             2                             274
  CLUS_2                            15                             139
  CLUS_3                             0                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(12Q21.31) MUTATED        3      4      3      1
  AMP PEAK 38(12Q21.31) WILD-TYPE     61     60     39     48
D37V3, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             3                              61
  CLUS_2                             4                              60
  CLUS_3                             3                              39
  CLUS_4                             1                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(12Q21.31) MUTATED        3      1      0      4      0      3
  AMP PEAK 38(12Q21.31) WILD-TYPE     43     27     33     25     47     24
                                 vv
clus                              CLUS_7
  AMP PEAK 38(12Q21.31) MUTATED        0
  AMP PEAK 38(12Q21.31) WILD-TYPE      9
D37V4, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             3                              43
  CLUS_2                             1                              27
  CLUS_3                             0                              33
  CLUS_4                             4                              25
  CLUS_5                             0                              47
  CLUS_6                             3                              24
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(12Q21.31) MUTATED        0     15      0      2
  AMP PEAK 38(12Q21.31) WILD-TYPE    168    140     58    114
D37V5, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             0                             168
  CLUS_2                            15                             140
  CLUS_3                             0                              58
  CLUS_4                             2                             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(12Q21.31) MUTATED        0     15      1      1      0
  AMP PEAK 38(12Q21.31) WILD-TYPE    104    119     85     94     78
D37V6, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                            15                             119
  CLUS_3                             1                              85
  CLUS_4                             1                              94
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(12Q21.31) MUTATED        1     14      2
  AMP PEAK 38(12Q21.31) WILD-TYPE    180    137    164
D37V7, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             1                             180
  CLUS_2                            14                             137
  CLUS_3                             2                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(12Q21.31) MUTATED        1     14      2
  AMP PEAK 38(12Q21.31) WILD-TYPE    177    114    190
D37V8, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             1                             177
  CLUS_2                            14                             114
  CLUS_3                             2                             190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(12Q21.31) MUTATED        2      8      4
  AMP PEAK 38(12Q21.31) WILD-TYPE    157    156    141
D37V9, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             2                             157
  CLUS_2                             8                             156
  CLUS_3                             4                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(12Q21.31) MUTATED        2     10      2
  AMP PEAK 38(12Q21.31) WILD-TYPE    162    116    176
D37V10, multiclass
        clus
vv       AMP PEAK 38(12Q21.31) MUTATED AMP PEAK 38(12Q21.31) WILD-TYPE
  CLUS_1                             2                             162
  CLUS_2                            10                             116
  CLUS_3                             2                             176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = AMP PEAK 39(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(12Q23.1) MUTATED       14      2      1
  AMP PEAK 39(12Q23.1) WILD-TYPE     42    358     82
D38V1, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                           14                             42
  CLUS_2                            2                            358
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(12Q23.1) MUTATED        3     14      0
  AMP PEAK 39(12Q23.1) WILD-TYPE    273    140     69
D38V2, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            3                            273
  CLUS_2                           14                            140
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(12Q23.1) MUTATED        4      4      2      1
  AMP PEAK 39(12Q23.1) WILD-TYPE     60     60     40     48
D38V3, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            4                             60
  CLUS_2                            4                             60
  CLUS_3                            2                             40
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(12Q23.1) MUTATED        3      1      0      3      1      3
  AMP PEAK 39(12Q23.1) WILD-TYPE     43     27     33     26     46     24
                                vv
clus                             CLUS_7
  AMP PEAK 39(12Q23.1) MUTATED        0
  AMP PEAK 39(12Q23.1) WILD-TYPE      9
D38V4, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            3                             26
  CLUS_5                            1                             46
  CLUS_6                            3                             24
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(12Q23.1) MUTATED        1     14      0      2
  AMP PEAK 39(12Q23.1) WILD-TYPE    167    141     58    114
D38V5, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                           14                            141
  CLUS_3                            0                             58
  CLUS_4                            2                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(12Q23.1) MUTATED        0     14      0      2      1
  AMP PEAK 39(12Q23.1) WILD-TYPE    104    120     86     93     77
D38V6, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                           14                            120
  CLUS_3                            0                             86
  CLUS_4                            2                             93
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(12Q23.1) MUTATED        3     13      1
  AMP PEAK 39(12Q23.1) WILD-TYPE    178    138    165
D38V7, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            3                            178
  CLUS_2                           13                            138
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(12Q23.1) MUTATED        2     13      2
  AMP PEAK 39(12Q23.1) WILD-TYPE    176    115    190
D38V8, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                           13                            115
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(12Q23.1) MUTATED        2      7      5
  AMP PEAK 39(12Q23.1) WILD-TYPE    157    157    140
D38V9, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            7                            157
  CLUS_3                            5                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(12Q23.1) MUTATED        3      9      2
  AMP PEAK 39(12Q23.1) WILD-TYPE    161    117    176
D38V10, multiclass
        clus
vv       AMP PEAK 39(12Q23.1) MUTATED AMP PEAK 39(12Q23.1) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            9                            117
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = AMP PEAK 40(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(13Q14.2) MUTATED        5      1      0
  AMP PEAK 40(13Q14.2) WILD-TYPE     51    359     83
D39V1, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(13Q14.2) MUTATED        1      4      1
  AMP PEAK 40(13Q14.2) WILD-TYPE    275    150     68
D39V2, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            4                            150
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(13Q14.2) MUTATED        1      2      0      0
  AMP PEAK 40(13Q14.2) WILD-TYPE     63     62     42     49
D39V3, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            0                             42
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(13Q14.2) MUTATED        1      0      0      0      0      2
  AMP PEAK 40(13Q14.2) WILD-TYPE     45     28     33     29     47     25
                                vv
clus                             CLUS_7
  AMP PEAK 40(13Q14.2) MUTATED        0
  AMP PEAK 40(13Q14.2) WILD-TYPE      9
D39V4, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            2                             25
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(13Q14.2) MUTATED        0      4      1      1
  AMP PEAK 40(13Q14.2) WILD-TYPE    168    151     57    115
D39V5, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            4                            151
  CLUS_3                            1                             57
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(13Q14.2) MUTATED        0      4      1      1      0
  AMP PEAK 40(13Q14.2) WILD-TYPE    104    130     85     94     78
D39V6, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            4                            130
  CLUS_3                            1                             85
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(13Q14.2) MUTATED        2      3      1
  AMP PEAK 40(13Q14.2) WILD-TYPE    179    148    165
D39V7, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                            3                            148
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(13Q14.2) MUTATED        2      3      1
  AMP PEAK 40(13Q14.2) WILD-TYPE    176    125    191
D39V8, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                            3                            125
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(13Q14.2) MUTATED        2      1      2
  AMP PEAK 40(13Q14.2) WILD-TYPE    157    163    143
D39V9, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            1                            163
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(13Q14.2) MUTATED        2      2      1
  AMP PEAK 40(13Q14.2) WILD-TYPE    162    124    177
D39V10, multiclass
        clus
vv       AMP PEAK 40(13Q14.2) MUTATED AMP PEAK 40(13Q14.2) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            2                            124
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = AMP PEAK 41(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(13Q34) MUTATED        5      2      0
  AMP PEAK 41(13Q34) WILD-TYPE     51    358     83
D40V1, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          5                           51
  CLUS_2                          2                          358
  CLUS_3                          0                           83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(13Q34) MUTATED        1      4      2
  AMP PEAK 41(13Q34) WILD-TYPE    275    150     67
D40V2, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          1                          275
  CLUS_2                          4                          150
  CLUS_3                          2                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(13Q34) MUTATED        1      2      0      1
  AMP PEAK 41(13Q34) WILD-TYPE     63     62     42     48
D40V3, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          1                           63
  CLUS_2                          2                           62
  CLUS_3                          0                           42
  CLUS_4                          1                           48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 41(13Q34) MUTATED        1      0      0      0      0      3      0
  AMP PEAK 41(13Q34) WILD-TYPE     45     28     33     29     47     24      9
D40V4, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          1                           45
  CLUS_2                          0                           28
  CLUS_3                          0                           33
  CLUS_4                          0                           29
  CLUS_5                          0                           47
  CLUS_6                          3                           24
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(13Q34) MUTATED        0      4      2      1
  AMP PEAK 41(13Q34) WILD-TYPE    168    151     56    115
D40V5, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          0                          168
  CLUS_2                          4                          151
  CLUS_3                          2                           56
  CLUS_4                          1                          115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(13Q34) MUTATED        0      4      2      0      1
  AMP PEAK 41(13Q34) WILD-TYPE    104    130     84     95     77
D40V6, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          0                          104
  CLUS_2                          4                          130
  CLUS_3                          2                           84
  CLUS_4                          0                           95
  CLUS_5                          1                           77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(13Q34) MUTATED        2      4      1
  AMP PEAK 41(13Q34) WILD-TYPE    179    147    165
D40V7, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          2                          179
  CLUS_2                          4                          147
  CLUS_3                          1                          165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(13Q34) MUTATED        2      4      1
  AMP PEAK 41(13Q34) WILD-TYPE    176    124    191
D40V8, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          2                          176
  CLUS_2                          4                          124
  CLUS_3                          1                          191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(13Q34) MUTATED        2      2      2
  AMP PEAK 41(13Q34) WILD-TYPE    157    162    143
D40V9, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          2                          157
  CLUS_2                          2                          162
  CLUS_3                          2                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(13Q34) MUTATED        2      2      2
  AMP PEAK 41(13Q34) WILD-TYPE    162    124    176
D40V10, multiclass
        clus
vv       AMP PEAK 41(13Q34) MUTATED AMP PEAK 41(13Q34) WILD-TYPE
  CLUS_1                          2                          162
  CLUS_2                          2                          124
  CLUS_3                          2                          176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = AMP PEAK 42(14Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(14Q12) MUTATED       10      2      1
  AMP PEAK 42(14Q12) WILD-TYPE     46    358     82
D41V1, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                         10                           46
  CLUS_2                          2                          358
  CLUS_3                          1                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(14Q12) MUTATED        3     10      0
  AMP PEAK 42(14Q12) WILD-TYPE    273    144     69
D41V2, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          3                          273
  CLUS_2                         10                          144
  CLUS_3                          0                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(14Q12) MUTATED        1      2      2      0
  AMP PEAK 42(14Q12) WILD-TYPE     63     62     40     49
D41V3, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          1                           63
  CLUS_2                          2                           62
  CLUS_3                          2                           40
  CLUS_4                          0                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 42(14Q12) MUTATED        1      0      0      2      0      2      0
  AMP PEAK 42(14Q12) WILD-TYPE     45     28     33     27     47     25      9
D41V4, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          1                           45
  CLUS_2                          0                           28
  CLUS_3                          0                           33
  CLUS_4                          2                           27
  CLUS_5                          0                           47
  CLUS_6                          2                           25
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(14Q12) MUTATED        3     10      0      0
  AMP PEAK 42(14Q12) WILD-TYPE    165    145     58    116
D41V5, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          3                          165
  CLUS_2                         10                          145
  CLUS_3                          0                           58
  CLUS_4                          0                          116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(14Q12) MUTATED        1     10      1      0      1
  AMP PEAK 42(14Q12) WILD-TYPE    103    124     85     95     77
D41V6, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          1                          103
  CLUS_2                         10                          124
  CLUS_3                          1                           85
  CLUS_4                          0                           95
  CLUS_5                          1                           77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(14Q12) MUTATED        2      9      2
  AMP PEAK 42(14Q12) WILD-TYPE    179    142    164
D41V7, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          2                          179
  CLUS_2                          9                          142
  CLUS_3                          2                          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(14Q12) MUTATED        2      9      2
  AMP PEAK 42(14Q12) WILD-TYPE    176    119    190
D41V8, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          2                          176
  CLUS_2                          9                          119
  CLUS_3                          2                          190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(14Q12) MUTATED        3      3      6
  AMP PEAK 42(14Q12) WILD-TYPE    156    161    139
D41V9, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          3                          156
  CLUS_2                          3                          161
  CLUS_3                          6                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(14Q12) MUTATED        4      7      1
  AMP PEAK 42(14Q12) WILD-TYPE    160    119    177
D41V10, multiclass
        clus
vv       AMP PEAK 42(14Q12) MUTATED AMP PEAK 42(14Q12) WILD-TYPE
  CLUS_1                          4                          160
  CLUS_2                          7                          119
  CLUS_3                          1                          177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = AMP PEAK 43(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(14Q32.31) MUTATED       10      2      1
  AMP PEAK 43(14Q32.31) WILD-TYPE     46    358     82
D42V1, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                            10                              46
  CLUS_2                             2                             358
  CLUS_3                             1                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(14Q32.31) MUTATED        1     11      1
  AMP PEAK 43(14Q32.31) WILD-TYPE    275    143     68
D42V2, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             1                             275
  CLUS_2                            11                             143
  CLUS_3                             1                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(14Q32.31) MUTATED        1      2      2      0
  AMP PEAK 43(14Q32.31) WILD-TYPE     63     62     40     49
D42V3, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             1                              63
  CLUS_2                             2                              62
  CLUS_3                             2                              40
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 43(14Q32.31) MUTATED        1      0      0      2      0      2
  AMP PEAK 43(14Q32.31) WILD-TYPE     45     28     33     27     47     25
                                 vv
clus                              CLUS_7
  AMP PEAK 43(14Q32.31) MUTATED        0
  AMP PEAK 43(14Q32.31) WILD-TYPE      9
D42V4, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             1                              45
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             2                              27
  CLUS_5                             0                              47
  CLUS_6                             2                              25
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(14Q32.31) MUTATED        2     11      0      0
  AMP PEAK 43(14Q32.31) WILD-TYPE    166    144     58    116
D42V5, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             2                             166
  CLUS_2                            11                             144
  CLUS_3                             0                              58
  CLUS_4                             0                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(14Q32.31) MUTATED        1     11      0      0      1
  AMP PEAK 43(14Q32.31) WILD-TYPE    103    123     86     95     77
D42V6, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             1                             103
  CLUS_2                            11                             123
  CLUS_3                             0                              86
  CLUS_4                             0                              95
  CLUS_5                             1                              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(14Q32.31) MUTATED        3     10      0
  AMP PEAK 43(14Q32.31) WILD-TYPE    178    141    166
D42V7, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             3                             178
  CLUS_2                            10                             141
  CLUS_3                             0                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(14Q32.31) MUTATED        3     10      0
  AMP PEAK 43(14Q32.31) WILD-TYPE    175    118    192
D42V8, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             3                             175
  CLUS_2                            10                             118
  CLUS_3                             0                             192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(14Q32.31) MUTATED        4      4      4
  AMP PEAK 43(14Q32.31) WILD-TYPE    155    160    141
D42V9, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             4                             155
  CLUS_2                             4                             160
  CLUS_3                             4                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(14Q32.31) MUTATED        4      8      0
  AMP PEAK 43(14Q32.31) WILD-TYPE    160    118    178
D42V10, multiclass
        clus
vv       AMP PEAK 43(14Q32.31) MUTATED AMP PEAK 43(14Q32.31) WILD-TYPE
  CLUS_1                             4                             160
  CLUS_2                             8                             118
  CLUS_3                             0                             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = AMP PEAK 46(18Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(18Q12.1) MUTATED        5      0      2
  AMP PEAK 46(18Q12.1) WILD-TYPE     51    360     81
D43V1, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            0                            360
  CLUS_3                            2                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(18Q12.1) MUTATED        1      5      1
  AMP PEAK 46(18Q12.1) WILD-TYPE    275    149     68
D43V2, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            5                            149
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(18Q12.1) MUTATED        1      0      1      0
  AMP PEAK 46(18Q12.1) WILD-TYPE     63     64     41     49
D43V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 46(18Q12.1) MUTATED"
clus
  AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2N0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39P 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 46(18Q12.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(18Q12.1) MUTATED        0      1      0      1      0      0
  AMP PEAK 46(18Q12.1) WILD-TYPE     46     27     33     28     47     27
                                vv
clus                             CLUS_7
  AMP PEAK 46(18Q12.1) MUTATED        0
  AMP PEAK 46(18Q12.1) WILD-TYPE      9
D43V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 46(18Q12.1) MUTATED"
clus
  AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2N0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39P 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 46(18Q12.1) WILD-TYPE" "AMP PEAK 46(18Q12.1) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 46(18Q12.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(18Q12.1) MUTATED        0      5      1      1
  AMP PEAK 46(18Q12.1) WILD-TYPE    168    150     57    115
D43V5, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            5                            150
  CLUS_3                            1                             57
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(18Q12.1) MUTATED        0      5      1      1      0
  AMP PEAK 46(18Q12.1) WILD-TYPE    104    129     85     94     78
D43V6, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            5                            129
  CLUS_3                            1                             85
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(18Q12.1) MUTATED        1      5      1
  AMP PEAK 46(18Q12.1) WILD-TYPE    180    146    165
D43V7, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            5                            146
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(18Q12.1) MUTATED        1      5      1
  AMP PEAK 46(18Q12.1) WILD-TYPE    177    123    191
D43V8, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            5                            123
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(18Q12.1) MUTATED        2      1      4
  AMP PEAK 46(18Q12.1) WILD-TYPE    157    163    141
D43V9, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            1                            163
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(18Q12.1) MUTATED        2      4      1
  AMP PEAK 46(18Q12.1) WILD-TYPE    162    122    177
D43V10, multiclass
        clus
vv       AMP PEAK 46(18Q12.1) MUTATED AMP PEAK 46(18Q12.1) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            4                            122
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = AMP PEAK 47(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(18Q22.1) MUTATED        5      1      1
  AMP PEAK 47(18Q22.1) WILD-TYPE     51    359     82
D44V1, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            1                            359
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(18Q22.1) MUTATED        2      4      1
  AMP PEAK 47(18Q22.1) WILD-TYPE    274    150     68
D44V2, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            2                            274
  CLUS_2                            4                            150
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(18Q22.1) MUTATED        2      0      1      0
  AMP PEAK 47(18Q22.1) WILD-TYPE     62     64     41     49
D44V3, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            0                             64
  CLUS_3                            1                             41
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(18Q22.1) MUTATED        0      2      0      1      0      0
  AMP PEAK 47(18Q22.1) WILD-TYPE     46     26     33     28     47     27
                                vv
clus                             CLUS_7
  AMP PEAK 47(18Q22.1) MUTATED        0
  AMP PEAK 47(18Q22.1) WILD-TYPE      9
D44V4, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            2                             26
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            0                             47
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(18Q22.1) MUTATED        0      4      1      2
  AMP PEAK 47(18Q22.1) WILD-TYPE    168    151     57    114
D44V5, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            4                            151
  CLUS_3                            1                             57
  CLUS_4                            2                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(18Q22.1) MUTATED        0      4      1      2      0
  AMP PEAK 47(18Q22.1) WILD-TYPE    104    130     85     93     78
D44V6, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            4                            130
  CLUS_3                            1                             85
  CLUS_4                            2                             93
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(18Q22.1) MUTATED        1      4      2
  AMP PEAK 47(18Q22.1) WILD-TYPE    180    147    164
D44V7, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            4                            147
  CLUS_3                            2                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(18Q22.1) MUTATED        1      4      2
  AMP PEAK 47(18Q22.1) WILD-TYPE    177    124    190
D44V8, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            4                            124
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(18Q22.1) MUTATED        2      2      3
  AMP PEAK 47(18Q22.1) WILD-TYPE    157    162    142
D44V9, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            2                            162
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(18Q22.1) MUTATED        2      3      2
  AMP PEAK 47(18Q22.1) WILD-TYPE    162    123    176
D44V10, multiclass
        clus
vv       AMP PEAK 47(18Q22.1) MUTATED AMP PEAK 47(18Q22.1) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            3                            123
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = AMP PEAK 48(18Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(18Q22.3) MUTATED        5      2      1
  AMP PEAK 48(18Q22.3) WILD-TYPE     51    358     82
D45V1, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            2                            358
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(18Q22.3) MUTATED        1      5      2
  AMP PEAK 48(18Q22.3) WILD-TYPE    275    149     67
D45V2, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            5                            149
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(18Q22.3) MUTATED        1      0      1      0
  AMP PEAK 48(18Q22.3) WILD-TYPE     63     64     41     49
D45V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 48(18Q22.3) MUTATED"
clus
  AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2N0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39P 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 48(18Q22.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(18Q22.3) MUTATED        0      1      0      1      0      0
  AMP PEAK 48(18Q22.3) WILD-TYPE     46     27     33     28     47     27
                                vv
clus                             CLUS_7
  AMP PEAK 48(18Q22.3) MUTATED        0
  AMP PEAK 48(18Q22.3) WILD-TYPE      9
D45V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 48(18Q22.3) MUTATED"
clus
  AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2N0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39P 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 48(18Q22.3) WILD-TYPE" "AMP PEAK 48(18Q22.3) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 48(18Q22.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(18Q22.3) MUTATED        0      5      2      1
  AMP PEAK 48(18Q22.3) WILD-TYPE    168    150     56    115
D45V5, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            5                            150
  CLUS_3                            2                             56
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(18Q22.3) MUTATED        0      5      2      1      0
  AMP PEAK 48(18Q22.3) WILD-TYPE    104    129     84     94     78
D45V6, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            5                            129
  CLUS_3                            2                             84
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(18Q22.3) MUTATED        1      6      1
  AMP PEAK 48(18Q22.3) WILD-TYPE    180    145    165
D45V7, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            6                            145
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(18Q22.3) MUTATED        1      6      1
  AMP PEAK 48(18Q22.3) WILD-TYPE    177    122    191
D45V8, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            6                            122
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(18Q22.3) MUTATED        2      1      5
  AMP PEAK 48(18Q22.3) WILD-TYPE    157    163    140
D45V9, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            1                            163
  CLUS_3                            5                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(18Q22.3) MUTATED        2      4      2
  AMP PEAK 48(18Q22.3) WILD-TYPE    162    122    176
D45V10, multiclass
        clus
vv       AMP PEAK 48(18Q22.3) MUTATED AMP PEAK 48(18Q22.3) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            4                            122
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = AMP PEAK 49(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(19P13.3) MUTATED        7      1      0
  AMP PEAK 49(19P13.3) WILD-TYPE     49    359     83
D46V1, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            7                             49
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(19P13.3) MUTATED        1      7      0
  AMP PEAK 49(19P13.3) WILD-TYPE    275    147     69
D46V2, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            7                            147
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(19P13.3) MUTATED        0      2      0      0
  AMP PEAK 49(19P13.3) WILD-TYPE     64     62     42     49
D46V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 49(19P13.3) MUTATED"
clus
  AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2MZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A2N0                     TCGA-ET-A2N1 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A2N4                     TCGA-ET-A2N5 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39I                     TCGA-ET-A39J 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 49(19P13.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(19P13.3) MUTATED        0      0      0      0      0      2
  AMP PEAK 49(19P13.3) WILD-TYPE     46     28     33     29     47     25
                                vv
clus                             CLUS_7
  AMP PEAK 49(19P13.3) MUTATED        0
  AMP PEAK 49(19P13.3) WILD-TYPE      9
D46V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 49(19P13.3) MUTATED"
clus
  AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A1YE                     TCGA-EM-A22I 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A22J                     TCGA-EM-A22L 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A22M                     TCGA-EM-A22O 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A22Q                     TCGA-EM-A2CJ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CK                     TCGA-EM-A2CL 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CN                     TCGA-EM-A2CO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CP                     TCGA-EM-A2CQ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2CU                     TCGA-EM-A2OV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2MZ 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A2N0                     TCGA-ET-A2N1 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A2N4                     TCGA-ET-A2N5 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39I                     TCGA-ET-A39J 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 49(19P13.3) WILD-TYPE" "AMP PEAK 49(19P13.3) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 49(19P13.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(19P13.3) MUTATED        1      7      0      0
  AMP PEAK 49(19P13.3) WILD-TYPE    167    148     58    116
D46V5, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            7                            148
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(19P13.3) MUTATED        1      7      0      0      0
  AMP PEAK 49(19P13.3) WILD-TYPE    103    127     86     95     78
D46V6, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            7                            127
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(19P13.3) MUTATED        1      7      0
  AMP PEAK 49(19P13.3) WILD-TYPE    180    144    166
D46V7, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            7                            144
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(19P13.3) MUTATED        0      7      1
  AMP PEAK 49(19P13.3) WILD-TYPE    178    121    191
D46V8, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            7                            121
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(19P13.3) MUTATED        1      1      3
  AMP PEAK 49(19P13.3) WILD-TYPE    158    163    142
D46V9, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            1                            158
  CLUS_2                            1                            163
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(19P13.3) MUTATED        1      3      1
  AMP PEAK 49(19P13.3) WILD-TYPE    163    123    177
D46V10, multiclass
        clus
vv       AMP PEAK 49(19P13.3) MUTATED AMP PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                            1                            163
  CLUS_2                            3                            123
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = AMP PEAK 50(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(20P13) MUTATED       13      0      1
  AMP PEAK 50(20P13) WILD-TYPE     43    360     82
D47V1, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                         13                           43
  CLUS_2                          0                          360
  CLUS_3                          1                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(20P13) MUTATED        1     12      1
  AMP PEAK 50(20P13) WILD-TYPE    275    142     68
D47V2, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          1                          275
  CLUS_2                         12                          142
  CLUS_3                          1                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(20P13) MUTATED        2      4      3      0
  AMP PEAK 50(20P13) WILD-TYPE     62     60     39     49
D47V3, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          2                           62
  CLUS_2                          4                           60
  CLUS_3                          3                           39
  CLUS_4                          0                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 50(20P13) MUTATED        1      1      0      3      0      4      0
  AMP PEAK 50(20P13) WILD-TYPE     45     27     33     26     47     23      9
D47V4, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          1                           45
  CLUS_2                          1                           27
  CLUS_3                          0                           33
  CLUS_4                          3                           26
  CLUS_5                          0                           47
  CLUS_6                          4                           23
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(20P13) MUTATED        1     12      0      1
  AMP PEAK 50(20P13) WILD-TYPE    167    143     58    115
D47V5, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          1                          167
  CLUS_2                         12                          143
  CLUS_3                          0                           58
  CLUS_4                          1                          115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(20P13) MUTATED        1     12      0      1      0
  AMP PEAK 50(20P13) WILD-TYPE    103    122     86     94     78
D47V6, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          1                          103
  CLUS_2                         12                          122
  CLUS_3                          0                           86
  CLUS_4                          1                           94
  CLUS_5                          0                           78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(20P13) MUTATED        2     11      1
  AMP PEAK 50(20P13) WILD-TYPE    179    140    165
D47V7, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          2                          179
  CLUS_2                         11                          140
  CLUS_3                          1                          165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(20P13) MUTATED        2     11      1
  AMP PEAK 50(20P13) WILD-TYPE    176    117    191
D47V8, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          2                          176
  CLUS_2                         11                          117
  CLUS_3                          1                          191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(20P13) MUTATED        3      6      2
  AMP PEAK 50(20P13) WILD-TYPE    156    158    143
D47V9, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          3                          156
  CLUS_2                          6                          158
  CLUS_3                          2                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(20P13) MUTATED        3      7      1
  AMP PEAK 50(20P13) WILD-TYPE    161    119    177
D47V10, multiclass
        clus
vv       AMP PEAK 50(20P13) MUTATED AMP PEAK 50(20P13) WILD-TYPE
  CLUS_1                          3                          161
  CLUS_2                          7                          119
  CLUS_3                          1                          177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = AMP PEAK 51(20Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(20Q13.11) MUTATED       12      0      2
  AMP PEAK 51(20Q13.11) WILD-TYPE     44    360     81
D48V1, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                            12                              44
  CLUS_2                             0                             360
  CLUS_3                             2                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(20Q13.11) MUTATED        1     12      1
  AMP PEAK 51(20Q13.11) WILD-TYPE    275    142     68
D48V2, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             1                             275
  CLUS_2                            12                             142
  CLUS_3                             1                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(20Q13.11) MUTATED        2      3      3      0
  AMP PEAK 51(20Q13.11) WILD-TYPE     62     61     39     49
D48V3, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             2                              62
  CLUS_2                             3                              61
  CLUS_3                             3                              39
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 51(20Q13.11) MUTATED        1      1      0      3      0      3
  AMP PEAK 51(20Q13.11) WILD-TYPE     45     27     33     26     47     24
                                 vv
clus                              CLUS_7
  AMP PEAK 51(20Q13.11) MUTATED        0
  AMP PEAK 51(20Q13.11) WILD-TYPE      9
D48V4, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             1                              45
  CLUS_2                             1                              27
  CLUS_3                             0                              33
  CLUS_4                             3                              26
  CLUS_5                             0                              47
  CLUS_6                             3                              24
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 51(20Q13.11) MUTATED        1     12      0      1
  AMP PEAK 51(20Q13.11) WILD-TYPE    167    143     58    115
D48V5, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             1                             167
  CLUS_2                            12                             143
  CLUS_3                             0                              58
  CLUS_4                             1                             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 51(20Q13.11) MUTATED        1     12      0      1      0
  AMP PEAK 51(20Q13.11) WILD-TYPE    103    122     86     94     78
D48V6, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             1                             103
  CLUS_2                            12                             122
  CLUS_3                             0                              86
  CLUS_4                             1                              94
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(20Q13.11) MUTATED        2     11      1
  AMP PEAK 51(20Q13.11) WILD-TYPE    179    140    165
D48V7, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             2                             179
  CLUS_2                            11                             140
  CLUS_3                             1                             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(20Q13.11) MUTATED        2     11      1
  AMP PEAK 51(20Q13.11) WILD-TYPE    176    117    191
D48V8, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             2                             176
  CLUS_2                            11                             117
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(20Q13.11) MUTATED        3      5      3
  AMP PEAK 51(20Q13.11) WILD-TYPE    156    159    142
D48V9, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             3                             156
  CLUS_2                             5                             159
  CLUS_3                             3                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 51(20Q13.11) MUTATED        3      7      1
  AMP PEAK 51(20Q13.11) WILD-TYPE    161    119    177
D48V10, multiclass
        clus
vv       AMP PEAK 51(20Q13.11) MUTATED AMP PEAK 51(20Q13.11) WILD-TYPE
  CLUS_1                             3                             161
  CLUS_2                             7                             119
  CLUS_3                             1                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = AMP PEAK 52(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 52(20Q13.2) MUTATED       13      0      1
  AMP PEAK 52(20Q13.2) WILD-TYPE     43    360     82
D49V1, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                            0                            360
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 52(20Q13.2) MUTATED        2     11      1
  AMP PEAK 52(20Q13.2) WILD-TYPE    274    143     68
D49V2, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            2                            274
  CLUS_2                           11                            143
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 52(20Q13.2) MUTATED        2      4      2      0
  AMP PEAK 52(20Q13.2) WILD-TYPE     62     60     40     49
D49V3, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            4                             60
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 52(20Q13.2) MUTATED        1      1      0      2      0      4
  AMP PEAK 52(20Q13.2) WILD-TYPE     45     27     33     27     47     23
                                vv
clus                             CLUS_7
  AMP PEAK 52(20Q13.2) MUTATED        0
  AMP PEAK 52(20Q13.2) WILD-TYPE      9
D49V4, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            0                             47
  CLUS_6                            4                             23
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 52(20Q13.2) MUTATED        2     11      0      1
  AMP PEAK 52(20Q13.2) WILD-TYPE    166    144     58    115
D49V5, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            2                            166
  CLUS_2                           11                            144
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 52(20Q13.2) MUTATED        1     11      0      1      1
  AMP PEAK 52(20Q13.2) WILD-TYPE    103    123     86     94     77
D49V6, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                           11                            123
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 52(20Q13.2) MUTATED        2     11      1
  AMP PEAK 52(20Q13.2) WILD-TYPE    179    140    165
D49V7, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                           11                            140
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 52(20Q13.2) MUTATED        2     10      2
  AMP PEAK 52(20Q13.2) WILD-TYPE    176    118    190
D49V8, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                           10                            118
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 52(20Q13.2) MUTATED        3      5      2
  AMP PEAK 52(20Q13.2) WILD-TYPE    156    159    143
D49V9, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            5                            159
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 52(20Q13.2) MUTATED        3      6      1
  AMP PEAK 52(20Q13.2) WILD-TYPE    161    120    177
D49V10, multiclass
        clus
vv       AMP PEAK 52(20Q13.2) MUTATED AMP PEAK 52(20Q13.2) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            6                            120
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = AMP PEAK 53(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 53(20Q13.2) MUTATED       13      0      0
  AMP PEAK 53(20Q13.2) WILD-TYPE     43    360     83
D50V1, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                            0                            360
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 53(20Q13.2) MUTATED        2     10      1
  AMP PEAK 53(20Q13.2) WILD-TYPE    274    144     68
D50V2, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            2                            274
  CLUS_2                           10                            144
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 53(20Q13.2) MUTATED        2      3      2      0
  AMP PEAK 53(20Q13.2) WILD-TYPE     62     61     40     49
D50V3, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            3                             61
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 53(20Q13.2) MUTATED        1      1      0      2      0      3
  AMP PEAK 53(20Q13.2) WILD-TYPE     45     27     33     27     47     24
                                vv
clus                             CLUS_7
  AMP PEAK 53(20Q13.2) MUTATED        0
  AMP PEAK 53(20Q13.2) WILD-TYPE      9
D50V4, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            0                             47
  CLUS_6                            3                             24
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 53(20Q13.2) MUTATED        2     10      0      1
  AMP PEAK 53(20Q13.2) WILD-TYPE    166    145     58    115
D50V5, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            2                            166
  CLUS_2                           10                            145
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 53(20Q13.2) MUTATED        2     10      0      1      0
  AMP PEAK 53(20Q13.2) WILD-TYPE    102    124     86     94     78
D50V6, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                           10                            124
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 53(20Q13.2) MUTATED        3      9      1
  AMP PEAK 53(20Q13.2) WILD-TYPE    178    142    165
D50V7, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            3                            178
  CLUS_2                            9                            142
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 53(20Q13.2) MUTATED        3      9      1
  AMP PEAK 53(20Q13.2) WILD-TYPE    175    119    191
D50V8, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            9                            119
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 53(20Q13.2) MUTATED        4      4      2
  AMP PEAK 53(20Q13.2) WILD-TYPE    155    160    143
D50V9, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            4                            155
  CLUS_2                            4                            160
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 53(20Q13.2) MUTATED        4      5      1
  AMP PEAK 53(20Q13.2) WILD-TYPE    160    121    177
D50V10, multiclass
        clus
vv       AMP PEAK 53(20Q13.2) MUTATED AMP PEAK 53(20Q13.2) WILD-TYPE
  CLUS_1                            4                            160
  CLUS_2                            5                            121
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = AMP PEAK 54(21Q21.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 54(21Q21.3) MUTATED        4      1      1
  AMP PEAK 54(21Q21.3) WILD-TYPE     52    359     82
D51V1, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            4                             52
  CLUS_2                            1                            359
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 54(21Q21.3) MUTATED        1      3      2
  AMP PEAK 54(21Q21.3) WILD-TYPE    275    151     67
D51V2, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            3                            151
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 54(21Q21.3) MUTATED        1      0      1      0
  AMP PEAK 54(21Q21.3) WILD-TYPE     63     64     41     49
D51V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 54(21Q21.3) MUTATED"
clus
  AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2N0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39P 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 54(21Q21.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 54(21Q21.3) MUTATED        0      1      0      1      0      0
  AMP PEAK 54(21Q21.3) WILD-TYPE     46     27     33     28     47     27
                                vv
clus                             CLUS_7
  AMP PEAK 54(21Q21.3) MUTATED        0
  AMP PEAK 54(21Q21.3) WILD-TYPE      9
D51V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 54(21Q21.3) MUTATED"
clus
  AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE 
                             2                            217 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2N0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A2N1                     TCGA-ET-A2N4 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A2N5                     TCGA-ET-A39I 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A39J                     TCGA-ET-A39L 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A39M                     TCGA-ET-A39P 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DT 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-ET-A3DV                     TCGA-ET-A3DW 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A22Z                     TCGA-FE-A230 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A231                     TCGA-FE-A232 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A233                     TCGA-FE-A234 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A235                     TCGA-FE-A236 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A237                     TCGA-FE-A239 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FE-A23A                     TCGA-FY-A2QD 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-FY-A3BL                     TCGA-FY-A3ON 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-GE-A2C6                     TCGA-H2-A2K9 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-IM-A3EB                     TCGA-IM-A3ED 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-J8-A3NZ                     TCGA-J8-A3O0 
"AMP PEAK 54(21Q21.3) WILD-TYPE" "AMP PEAK 54(21Q21.3) WILD-TYPE" 
                    TCGA-J8-A3O1 
"AMP PEAK 54(21Q21.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 54(21Q21.3) MUTATED        1      3      1      1
  AMP PEAK 54(21Q21.3) WILD-TYPE    167    152     57    115
D51V5, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            3                            152
  CLUS_3                            1                             57
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 54(21Q21.3) MUTATED        1      3      1      1      0
  AMP PEAK 54(21Q21.3) WILD-TYPE    103    131     85     94     78
D51V6, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            3                            131
  CLUS_3                            1                             85
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 54(21Q21.3) MUTATED        2      3      1
  AMP PEAK 54(21Q21.3) WILD-TYPE    179    148    165
D51V7, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                            3                            148
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 54(21Q21.3) MUTATED        2      3      1
  AMP PEAK 54(21Q21.3) WILD-TYPE    176    125    191
D51V8, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                            3                            125
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 54(21Q21.3) MUTATED        2      1      2
  AMP PEAK 54(21Q21.3) WILD-TYPE    157    163    143
D51V9, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            1                            163
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 54(21Q21.3) MUTATED        2      2      1
  AMP PEAK 54(21Q21.3) WILD-TYPE    162    124    177
D51V10, multiclass
        clus
vv       AMP PEAK 54(21Q21.3) MUTATED AMP PEAK 54(21Q21.3) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            2                            124
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = AMP PEAK 55(22Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 55(22Q11.21) MUTATED        2      1      4
  AMP PEAK 55(22Q11.21) WILD-TYPE     54    359     79
D52V1, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             2                              54
  CLUS_2                             1                             359
  CLUS_3                             4                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 55(22Q11.21) MUTATED        0      5      2
  AMP PEAK 55(22Q11.21) WILD-TYPE    276    149     67
D52V2, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             0                             276
  CLUS_2                             5                             149
  CLUS_3                             2                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 55(22Q11.21) MUTATED        0      0      0      1
  AMP PEAK 55(22Q11.21) WILD-TYPE     64     64     42     48
D52V3, multiclass
[1] "Remove cluster labels:"        "AMP PEAK 55(22Q11.21) MUTATED"
clus
  AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE 
                              1                             218 
                     TCGA-BJ-A0YZ                      TCGA-BJ-A0Z0 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0Z2                      TCGA-BJ-A0Z3 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0Z5                      TCGA-BJ-A0Z9 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0ZA                      TCGA-BJ-A0ZB 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0ZC                      TCGA-BJ-A0ZE 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0ZG                      TCGA-BJ-A0ZJ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A18Y                      TCGA-BJ-A18Z 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A190                      TCGA-BJ-A191 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A192                      TCGA-BJ-A28R 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A28S                      TCGA-BJ-A28T 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A28V                      TCGA-BJ-A28W 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A28Z                      TCGA-BJ-A290 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A291                      TCGA-BJ-A2N7 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A2N9                      TCGA-BJ-A2NA 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A2P4                      TCGA-BJ-A3EZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A3F0                      TCGA-CE-A13K 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-CE-A27D                      TCGA-CE-A3MD 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-CE-A3ME                      TCGA-DE-A0Y2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DE-A2OL                      TCGA-DE-A3KN 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13M                      TCGA-DJ-A13O 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13R                      TCGA-DJ-A13S 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13V                      TCGA-DJ-A13W 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13X                      TCGA-DJ-A1QD 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QE                      TCGA-DJ-A1QF 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QG                      TCGA-DJ-A1QI 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QL                      TCGA-DJ-A1QM 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QN                      TCGA-DJ-A1QO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PN                      TCGA-DJ-A2PO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PP                      TCGA-DJ-A2PQ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PR                      TCGA-DJ-A2PS 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PU                      TCGA-DJ-A2PV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PW                      TCGA-DJ-A2PY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PZ                      TCGA-DJ-A2Q0 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q1                      TCGA-DJ-A2Q2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q4                      TCGA-DJ-A2Q5 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q6                      TCGA-DJ-A2Q7 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q8                      TCGA-DJ-A2Q9 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2QA                      TCGA-DJ-A2QB 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2QC                      TCGA-DO-A1JZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DO-A1K0                      TCGA-E3-A3DY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-E3-A3DZ                      TCGA-E3-A3E0 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-E3-A3E1                      TCGA-E3-A3E3 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-E3-A3E5                      TCGA-E8-A2EA 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CL                      TCGA-EL-A3CM 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CN                      TCGA-EL-A3CO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CP                      TCGA-EL-A3CR 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CS                      TCGA-EL-A3CT 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CU                      TCGA-EL-A3CV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CW                      TCGA-EL-A3CX 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CY                      TCGA-EL-A3CZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3D0                      TCGA-EL-A3D1 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3D4                      TCGA-EL-A3D5 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3D6                      TCGA-EL-A3GO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GP                      TCGA-EL-A3GQ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GR                      TCGA-EL-A3GS 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GU                      TCGA-EL-A3GV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GW                      TCGA-EL-A3GX 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GY                      TCGA-EL-A3GZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H1                      TCGA-EL-A3H2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H3                      TCGA-EL-A3H4 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H5                      TCGA-EL-A3H7 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H8                      TCGA-EL-A3MW 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3MX                      TCGA-EL-A3MY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3MZ                      TCGA-EL-A3N2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3N3                      TCGA-EM-A1CT 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1CU                      TCGA-EM-A1CV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1CW                      TCGA-EM-A1YA 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1YB                      TCGA-EM-A1YC 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1YD                      TCGA-EM-A1YE 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A22I                      TCGA-EM-A22J 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A22L                      TCGA-EM-A22M 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A22O                      TCGA-EM-A22Q 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CJ                      TCGA-EM-A2CK 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CL                      TCGA-EM-A2CN 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CO                      TCGA-EM-A2CP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CQ                      TCGA-EM-A2CU 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2OV                      TCGA-EM-A2OY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2P1                      TCGA-EM-A3AI 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3AJ                      TCGA-EM-A3AL 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3AN                      TCGA-EM-A3AO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3AP                      TCGA-EM-A3FJ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3FL                      TCGA-EM-A3FN 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3FO                      TCGA-EM-A3FP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A25G                      TCGA-ET-A25L 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A25M                      TCGA-ET-A25O 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A2MY                      TCGA-ET-A2MZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A2N0                      TCGA-ET-A2N1 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A2N4                      TCGA-ET-A2N5 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39I                      TCGA-ET-A39J 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39L                      TCGA-ET-A39M 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39N                      TCGA-ET-A39P 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39R                      TCGA-ET-A39T 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BN                      TCGA-ET-A3BP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BS                      TCGA-ET-A3BT 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BU                      TCGA-ET-A3BV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BW                      TCGA-ET-A3BX 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3DO                      TCGA-ET-A3DP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3DS                      TCGA-ET-A3DV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3DW                      TCGA-FE-A22Z 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A230                      TCGA-FE-A231 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A232                      TCGA-FE-A233 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A234                      TCGA-FE-A235 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A236                      TCGA-FE-A237 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A239                      TCGA-FE-A23A 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FY-A2QD                      TCGA-FY-A3BL 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FY-A3ON                      TCGA-GE-A2C6 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-H2-A2K9                      TCGA-IM-A3EB 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-IM-A3ED                      TCGA-J8-A3NZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-J8-A3O0                      TCGA-J8-A3O1 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 55(22Q11.21) MUTATED        0      0      0      1      0      0
  AMP PEAK 55(22Q11.21) WILD-TYPE     46     28     33     28     47     27
                                 vv
clus                              CLUS_7
  AMP PEAK 55(22Q11.21) MUTATED        0
  AMP PEAK 55(22Q11.21) WILD-TYPE      9
D52V4, multiclass
[1] "Remove cluster labels:"        "AMP PEAK 55(22Q11.21) MUTATED"
clus
  AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE 
                              1                             218 
                     TCGA-BJ-A0YZ                      TCGA-BJ-A0Z0 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0Z2                      TCGA-BJ-A0Z3 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0Z5                      TCGA-BJ-A0Z9 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0ZA                      TCGA-BJ-A0ZB 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0ZC                      TCGA-BJ-A0ZE 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A0ZG                      TCGA-BJ-A0ZJ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A18Y                      TCGA-BJ-A18Z 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A190                      TCGA-BJ-A191 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A192                      TCGA-BJ-A28R 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A28S                      TCGA-BJ-A28T 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A28V                      TCGA-BJ-A28W 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A28Z                      TCGA-BJ-A290 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A291                      TCGA-BJ-A2N7 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A2N9                      TCGA-BJ-A2NA 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A2P4                      TCGA-BJ-A3EZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-BJ-A3F0                      TCGA-CE-A13K 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-CE-A27D                      TCGA-CE-A3MD 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-CE-A3ME                      TCGA-DE-A0Y2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DE-A2OL                      TCGA-DE-A3KN 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13M                      TCGA-DJ-A13O 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13R                      TCGA-DJ-A13S 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13V                      TCGA-DJ-A13W 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A13X                      TCGA-DJ-A1QD 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QE                      TCGA-DJ-A1QF 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QG                      TCGA-DJ-A1QI 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QL                      TCGA-DJ-A1QM 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A1QN                      TCGA-DJ-A1QO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PN                      TCGA-DJ-A2PO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PP                      TCGA-DJ-A2PQ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PR                      TCGA-DJ-A2PS 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PU                      TCGA-DJ-A2PV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PW                      TCGA-DJ-A2PY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2PZ                      TCGA-DJ-A2Q0 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q1                      TCGA-DJ-A2Q2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q4                      TCGA-DJ-A2Q5 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q6                      TCGA-DJ-A2Q7 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2Q8                      TCGA-DJ-A2Q9 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2QA                      TCGA-DJ-A2QB 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DJ-A2QC                      TCGA-DO-A1JZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-DO-A1K0                      TCGA-E3-A3DY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-E3-A3DZ                      TCGA-E3-A3E0 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-E3-A3E1                      TCGA-E3-A3E3 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-E3-A3E5                      TCGA-E8-A2EA 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CL                      TCGA-EL-A3CM 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CN                      TCGA-EL-A3CO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CP                      TCGA-EL-A3CR 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CS                      TCGA-EL-A3CT 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CU                      TCGA-EL-A3CV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CW                      TCGA-EL-A3CX 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3CY                      TCGA-EL-A3CZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3D0                      TCGA-EL-A3D1 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3D4                      TCGA-EL-A3D5 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3D6                      TCGA-EL-A3GO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GP                      TCGA-EL-A3GQ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GR                      TCGA-EL-A3GS 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GU                      TCGA-EL-A3GV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GW                      TCGA-EL-A3GX 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3GY                      TCGA-EL-A3GZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H1                      TCGA-EL-A3H2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H3                      TCGA-EL-A3H4 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H5                      TCGA-EL-A3H7 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3H8                      TCGA-EL-A3MW 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3MX                      TCGA-EL-A3MY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3MZ                      TCGA-EL-A3N2 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EL-A3N3                      TCGA-EM-A1CT 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1CU                      TCGA-EM-A1CV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1CW                      TCGA-EM-A1YA 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1YB                      TCGA-EM-A1YC 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A1YD                      TCGA-EM-A1YE 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A22I                      TCGA-EM-A22J 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A22L                      TCGA-EM-A22M 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A22O                      TCGA-EM-A22Q 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CJ                      TCGA-EM-A2CK 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CL                      TCGA-EM-A2CN 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CO                      TCGA-EM-A2CP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2CQ                      TCGA-EM-A2CU 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2OV                      TCGA-EM-A2OY 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A2P1                      TCGA-EM-A3AI 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3AJ                      TCGA-EM-A3AL 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3AN                      TCGA-EM-A3AO 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3AP                      TCGA-EM-A3FJ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3FL                      TCGA-EM-A3FN 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-EM-A3FO                      TCGA-EM-A3FP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A25G                      TCGA-ET-A25L 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A25M                      TCGA-ET-A25O 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A2MY                      TCGA-ET-A2MZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A2N0                      TCGA-ET-A2N1 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A2N4                      TCGA-ET-A2N5 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39I                      TCGA-ET-A39J 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39L                      TCGA-ET-A39M 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39N                      TCGA-ET-A39P 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A39R                      TCGA-ET-A39T 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BN                      TCGA-ET-A3BP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BS                      TCGA-ET-A3BT 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BU                      TCGA-ET-A3BV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3BW                      TCGA-ET-A3BX 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3DO                      TCGA-ET-A3DP 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3DS                      TCGA-ET-A3DV 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-ET-A3DW                      TCGA-FE-A22Z 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A230                      TCGA-FE-A231 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A232                      TCGA-FE-A233 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A234                      TCGA-FE-A235 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A236                      TCGA-FE-A237 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FE-A239                      TCGA-FE-A23A 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FY-A2QD                      TCGA-FY-A3BL 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-FY-A3ON                      TCGA-GE-A2C6 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-H2-A2K9                      TCGA-IM-A3EB 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-IM-A3ED                      TCGA-J8-A3NZ 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                     TCGA-J8-A3O0                      TCGA-J8-A3O1 
"AMP PEAK 55(22Q11.21) WILD-TYPE" "AMP PEAK 55(22Q11.21) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 55(22Q11.21) MUTATED        0      5      2      0
  AMP PEAK 55(22Q11.21) WILD-TYPE    168    150     56    116
D52V5, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             0                             168
  CLUS_2                             5                             150
  CLUS_3                             2                              56
  CLUS_4                             0                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 55(22Q11.21) MUTATED        0      5      2      0      0
  AMP PEAK 55(22Q11.21) WILD-TYPE    104    129     84     95     78
D52V6, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                             5                             129
  CLUS_3                             2                              84
  CLUS_4                             0                              95
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 55(22Q11.21) MUTATED        2      5      0
  AMP PEAK 55(22Q11.21) WILD-TYPE    179    146    166
D52V7, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             2                             179
  CLUS_2                             5                             146
  CLUS_3                             0                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 55(22Q11.21) MUTATED        1      5      1
  AMP PEAK 55(22Q11.21) WILD-TYPE    177    123    191
D52V8, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             1                             177
  CLUS_2                             5                             123
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 55(22Q11.21) MUTATED        2      0      5
  AMP PEAK 55(22Q11.21) WILD-TYPE    157    164    140
D52V9, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             2                             157
  CLUS_2                             0                             164
  CLUS_3                             5                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 55(22Q11.21) MUTATED        2      5      0
  AMP PEAK 55(22Q11.21) WILD-TYPE    162    121    178
D52V10, multiclass
        clus
vv       AMP PEAK 55(22Q11.21) MUTATED AMP PEAK 55(22Q11.21) WILD-TYPE
  CLUS_1                             2                             162
  CLUS_2                             5                             121
  CLUS_3                             0                             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = AMP PEAK 56(XP22.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 56(XP22.12) MUTATED        8      1      1
  AMP PEAK 56(XP22.12) WILD-TYPE     48    359     82
D53V1, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            8                             48
  CLUS_2                            1                            359
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 56(XP22.12) MUTATED        0      8      2
  AMP PEAK 56(XP22.12) WILD-TYPE    276    146     67
D53V2, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            0                            276
  CLUS_2                            8                            146
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 56(XP22.12) MUTATED        2      2      1      0
  AMP PEAK 56(XP22.12) WILD-TYPE     62     62     41     49
D53V3, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            2                             62
  CLUS_3                            1                             41
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 56(XP22.12) MUTATED        3      0      0      1      0      1
  AMP PEAK 56(XP22.12) WILD-TYPE     43     28     33     28     47     26
                                vv
clus                             CLUS_7
  AMP PEAK 56(XP22.12) MUTATED        0
  AMP PEAK 56(XP22.12) WILD-TYPE      9
D53V4, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 56(XP22.12) MUTATED        1      8      1      0
  AMP PEAK 56(XP22.12) WILD-TYPE    167    147     57    116
D53V5, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            8                            147
  CLUS_3                            1                             57
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 56(XP22.12) MUTATED        1      8      1      0      0
  AMP PEAK 56(XP22.12) WILD-TYPE    103    126     85     95     78
D53V6, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            8                            126
  CLUS_3                            1                             85
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 56(XP22.12) MUTATED        2      7      1
  AMP PEAK 56(XP22.12) WILD-TYPE    179    144    165
D53V7, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                            7                            144
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 56(XP22.12) MUTATED        2      7      1
  AMP PEAK 56(XP22.12) WILD-TYPE    176    121    191
D53V8, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                            7                            121
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 56(XP22.12) MUTATED        2      3      4
  AMP PEAK 56(XP22.12) WILD-TYPE    157    161    141
D53V9, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            3                            161
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 56(XP22.12) MUTATED        2      6      1
  AMP PEAK 56(XP22.12) WILD-TYPE    162    120    177
D53V10, multiclass
        clus
vv       AMP PEAK 56(XP22.12) MUTATED AMP PEAK 56(XP22.12) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            6                            120
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = AMP PEAK 57(XP11.4) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 57(XP11.4) MUTATED        9      0      0
  AMP PEAK 57(XP11.4) WILD-TYPE     47    360     83
D54V1, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           9                            47
  CLUS_2                           0                           360
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 57(XP11.4) MUTATED        1      6      2
  AMP PEAK 57(XP11.4) WILD-TYPE    275    148     67
D54V2, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           6                           148
  CLUS_3                           2                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 57(XP11.4) MUTATED        1      2      1      0
  AMP PEAK 57(XP11.4) WILD-TYPE     63     62     41     49
D54V3, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 57(XP11.4) MUTATED        2      0      0      1      0      1
  AMP PEAK 57(XP11.4) WILD-TYPE     44     28     33     28     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 57(XP11.4) MUTATED        0
  AMP PEAK 57(XP11.4) WILD-TYPE      9
D54V4, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 57(XP11.4) MUTATED        2      6      1      0
  AMP PEAK 57(XP11.4) WILD-TYPE    166    149     57    116
D54V5, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                           6                           149
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 57(XP11.4) MUTATED        1      6      1      0      1
  AMP PEAK 57(XP11.4) WILD-TYPE    103    128     85     95     77
D54V6, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           6                           128
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 57(XP11.4) MUTATED        2      6      1
  AMP PEAK 57(XP11.4) WILD-TYPE    179    145    165
D54V7, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           6                           145
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 57(XP11.4) MUTATED        2      5      2
  AMP PEAK 57(XP11.4) WILD-TYPE    176    123    190
D54V8, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           5                           123
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 57(XP11.4) MUTATED        2      2      3
  AMP PEAK 57(XP11.4) WILD-TYPE    157    162    142
D54V9, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           2                           157
  CLUS_2                           2                           162
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 57(XP11.4) MUTATED        2      4      1
  AMP PEAK 57(XP11.4) WILD-TYPE    162    122    177
D54V10, multiclass
        clus
vv       AMP PEAK 57(XP11.4) MUTATED AMP PEAK 57(XP11.4) WILD-TYPE
  CLUS_1                           2                           162
  CLUS_2                           4                           122
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = AMP PEAK 58(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 58(XP11.22) MUTATED        7      1      0
  AMP PEAK 58(XP11.22) WILD-TYPE     49    359     83
D55V1, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            7                             49
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 58(XP11.22) MUTATED        1      6      1
  AMP PEAK 58(XP11.22) WILD-TYPE    275    148     68
D55V2, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            6                            148
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 58(XP11.22) MUTATED        1      2      1      1
  AMP PEAK 58(XP11.22) WILD-TYPE     63     62     41     48
D55V3, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            1                             41
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 58(XP11.22) MUTATED        2      0      0      2      0      1
  AMP PEAK 58(XP11.22) WILD-TYPE     44     28     33     27     47     26
                                vv
clus                             CLUS_7
  AMP PEAK 58(XP11.22) MUTATED        0
  AMP PEAK 58(XP11.22) WILD-TYPE      9
D55V4, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 58(XP11.22) MUTATED        1      6      0      1
  AMP PEAK 58(XP11.22) WILD-TYPE    167    149     58    115
D55V5, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            6                            149
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 58(XP11.22) MUTATED        1      6      1      0      0
  AMP PEAK 58(XP11.22) WILD-TYPE    103    128     85     95     78
D55V6, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            6                            128
  CLUS_3                            1                             85
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 58(XP11.22) MUTATED        2      5      1
  AMP PEAK 58(XP11.22) WILD-TYPE    179    146    165
D55V7, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            2                            179
  CLUS_2                            5                            146
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 58(XP11.22) MUTATED        2      5      1
  AMP PEAK 58(XP11.22) WILD-TYPE    176    123    191
D55V8, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                            5                            123
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 58(XP11.22) MUTATED        2      3      2
  AMP PEAK 58(XP11.22) WILD-TYPE    157    161    143
D55V9, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            3                            161
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 58(XP11.22) MUTATED        2      4      1
  AMP PEAK 58(XP11.22) WILD-TYPE    162    122    177
D55V10, multiclass
        clus
vv       AMP PEAK 58(XP11.22) MUTATED AMP PEAK 58(XP11.22) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            4                            122
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = AMP PEAK 59(XP11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 59(XP11.21) MUTATED        8      1      0
  AMP PEAK 59(XP11.21) WILD-TYPE     48    359     83
D56V1, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            8                             48
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 59(XP11.21) MUTATED        1      7      1
  AMP PEAK 59(XP11.21) WILD-TYPE    275    147     68
D56V2, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            7                            147
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 59(XP11.21) MUTATED        1      3      1      0
  AMP PEAK 59(XP11.21) WILD-TYPE     63     61     41     49
D56V3, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            3                             61
  CLUS_3                            1                             41
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 59(XP11.21) MUTATED        2      0      1      1      0      1
  AMP PEAK 59(XP11.21) WILD-TYPE     44     28     32     28     47     26
                                vv
clus                             CLUS_7
  AMP PEAK 59(XP11.21) MUTATED        0
  AMP PEAK 59(XP11.21) WILD-TYPE      9
D56V4, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            1                             32
  CLUS_4                            1                             28
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 59(XP11.21) MUTATED        2      7      0      0
  AMP PEAK 59(XP11.21) WILD-TYPE    166    148     58    116
D56V5, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            2                            166
  CLUS_2                            7                            148
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 59(XP11.21) MUTATED        2      7      0      0      0
  AMP PEAK 59(XP11.21) WILD-TYPE    102    127     86     95     78
D56V6, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                            7                            127
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 59(XP11.21) MUTATED        3      6      0
  AMP PEAK 59(XP11.21) WILD-TYPE    178    145    166
D56V7, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            3                            178
  CLUS_2                            6                            145
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 59(XP11.21) MUTATED        3      6      0
  AMP PEAK 59(XP11.21) WILD-TYPE    175    122    192
D56V8, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            6                            122
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 59(XP11.21) MUTATED        3      2      3
  AMP PEAK 59(XP11.21) WILD-TYPE    156    162    142
D56V9, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            2                            162
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 59(XP11.21) MUTATED        3      5      0
  AMP PEAK 59(XP11.21) WILD-TYPE    161    121    178
D56V10, multiclass
        clus
vv       AMP PEAK 59(XP11.21) MUTATED AMP PEAK 59(XP11.21) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            5                            121
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = AMP PEAK 60(XQ21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 60(XQ21.2) MUTATED        8      1      0
  AMP PEAK 60(XQ21.2) WILD-TYPE     48    359     83
D57V1, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           8                            48
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 60(XQ21.2) MUTATED        2      6      1
  AMP PEAK 60(XQ21.2) WILD-TYPE    274    148     68
D57V2, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           2                           274
  CLUS_2                           6                           148
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 60(XQ21.2) MUTATED        1      2      1      0
  AMP PEAK 60(XQ21.2) WILD-TYPE     63     62     41     49
D57V3, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 60(XQ21.2) MUTATED        2      0      0      1      0      1
  AMP PEAK 60(XQ21.2) WILD-TYPE     44     28     33     28     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 60(XQ21.2) MUTATED        0
  AMP PEAK 60(XQ21.2) WILD-TYPE      9
D57V4, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 60(XQ21.2) MUTATED        3      6      0      0
  AMP PEAK 60(XQ21.2) WILD-TYPE    165    149     58    116
D57V5, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           3                           165
  CLUS_2                           6                           149
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 60(XQ21.2) MUTATED        2      6      0      0      1
  AMP PEAK 60(XQ21.2) WILD-TYPE    102    128     86     95     77
D57V6, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                           6                           128
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 60(XQ21.2) MUTATED        3      5      1
  AMP PEAK 60(XQ21.2) WILD-TYPE    178    146    165
D57V7, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           3                           178
  CLUS_2                           5                           146
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 60(XQ21.2) MUTATED        3      5      1
  AMP PEAK 60(XQ21.2) WILD-TYPE    175    123    191
D57V8, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           3                           175
  CLUS_2                           5                           123
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 60(XQ21.2) MUTATED        3      3      2
  AMP PEAK 60(XQ21.2) WILD-TYPE    156    161    143
D57V9, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           3                           156
  CLUS_2                           3                           161
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 60(XQ21.2) MUTATED        3      4      1
  AMP PEAK 60(XQ21.2) WILD-TYPE    161    122    177
D57V10, multiclass
        clus
vv       AMP PEAK 60(XQ21.2) MUTATED AMP PEAK 60(XQ21.2) WILD-TYPE
  CLUS_1                           3                           161
  CLUS_2                           4                           122
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = AMP PEAK 61(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 61(XQ22.3) MUTATED        7      8      0
  AMP PEAK 61(XQ22.3) WILD-TYPE     49    352     83
D58V1, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           7                            49
  CLUS_2                           8                           352
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 61(XQ22.3) MUTATED        7      6      2
  AMP PEAK 61(XQ22.3) WILD-TYPE    269    148     67
D58V2, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           7                           269
  CLUS_2                           6                           148
  CLUS_3                           2                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 61(XQ22.3) MUTATED        1      2      1      0
  AMP PEAK 61(XQ22.3) WILD-TYPE     63     62     41     49
D58V3, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 61(XQ22.3) MUTATED        2      0      0      1      0      1
  AMP PEAK 61(XQ22.3) WILD-TYPE     44     28     33     28     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 61(XQ22.3) MUTATED        0
  AMP PEAK 61(XQ22.3) WILD-TYPE      9
D58V4, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 61(XQ22.3) MUTATED        6      6      1      2
  AMP PEAK 61(XQ22.3) WILD-TYPE    162    149     57    114
D58V5, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           6                           162
  CLUS_2                           6                           149
  CLUS_3                           1                            57
  CLUS_4                           2                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 61(XQ22.3) MUTATED        3      6      2      2      2
  AMP PEAK 61(XQ22.3) WILD-TYPE    101    128     84     93     76
D58V6, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           3                           101
  CLUS_2                           6                           128
  CLUS_3                           2                            84
  CLUS_4                           2                            93
  CLUS_5                           2                            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 61(XQ22.3) MUTATED        5      5      5
  AMP PEAK 61(XQ22.3) WILD-TYPE    176    146    161
D58V7, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           5                           176
  CLUS_2                           5                           146
  CLUS_3                           5                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 61(XQ22.3) MUTATED        6      5      4
  AMP PEAK 61(XQ22.3) WILD-TYPE    172    123    188
D58V8, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           6                           172
  CLUS_2                           5                           123
  CLUS_3                           4                           188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 61(XQ22.3) MUTATED        5      3      6
  AMP PEAK 61(XQ22.3) WILD-TYPE    154    161    139
D58V9, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           5                           154
  CLUS_2                           3                           161
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 61(XQ22.3) MUTATED        5      4      5
  AMP PEAK 61(XQ22.3) WILD-TYPE    159    122    173
D58V10, multiclass
        clus
vv       AMP PEAK 61(XQ22.3) MUTATED AMP PEAK 61(XQ22.3) WILD-TYPE
  CLUS_1                           5                           159
  CLUS_2                           4                           122
  CLUS_3                           5                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = AMP PEAK 62(XQ23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 62(XQ23) MUTATED        7      2      0
  AMP PEAK 62(XQ23) WILD-TYPE     49    358     83
D59V1, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         7                          49
  CLUS_2                         2                         358
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 62(XQ23) MUTATED        2      6      1
  AMP PEAK 62(XQ23) WILD-TYPE    274    148     68
D59V2, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         2                         274
  CLUS_2                         6                         148
  CLUS_3                         1                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 62(XQ23) MUTATED        1      2      1      1
  AMP PEAK 62(XQ23) WILD-TYPE     63     62     41     48
D59V3, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         1                          63
  CLUS_2                         2                          62
  CLUS_3                         1                          41
  CLUS_4                         1                          48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 62(XQ23) MUTATED        2      0      0      1      1      1      0
  AMP PEAK 62(XQ23) WILD-TYPE     44     28     33     28     46     26      9
D59V4, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         2                          44
  CLUS_2                         0                          28
  CLUS_3                         0                          33
  CLUS_4                         1                          28
  CLUS_5                         1                          46
  CLUS_6                         1                          26
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 62(XQ23) MUTATED        3      6      0      0
  AMP PEAK 62(XQ23) WILD-TYPE    165    149     58    116
D59V5, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         3                         165
  CLUS_2                         6                         149
  CLUS_3                         0                          58
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 62(XQ23) MUTATED        1      6      0      0      2
  AMP PEAK 62(XQ23) WILD-TYPE    103    128     86     95     76
D59V6, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         1                         103
  CLUS_2                         6                         128
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         2                          76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 62(XQ23) MUTATED        3      5      1
  AMP PEAK 62(XQ23) WILD-TYPE    178    146    165
D59V7, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         3                         178
  CLUS_2                         5                         146
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 62(XQ23) MUTATED        2      5      2
  AMP PEAK 62(XQ23) WILD-TYPE    176    123    190
D59V8, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         2                         176
  CLUS_2                         5                         123
  CLUS_3                         2                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 62(XQ23) MUTATED        3      3      2
  AMP PEAK 62(XQ23) WILD-TYPE    156    161    143
D59V9, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         3                         156
  CLUS_2                         3                         161
  CLUS_3                         2                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 62(XQ23) MUTATED        2      4      2
  AMP PEAK 62(XQ23) WILD-TYPE    162    122    176
D59V10, multiclass
        clus
vv       AMP PEAK 62(XQ23) MUTATED AMP PEAK 62(XQ23) WILD-TYPE
  CLUS_1                         2                         162
  CLUS_2                         4                         122
  CLUS_3                         2                         176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = AMP PEAK 63(XQ24) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 63(XQ24) MUTATED        7      2      0
  AMP PEAK 63(XQ24) WILD-TYPE     49    358     83
D60V1, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         7                          49
  CLUS_2                         2                         358
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 63(XQ24) MUTATED        2      6      1
  AMP PEAK 63(XQ24) WILD-TYPE    274    148     68
D60V2, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         2                         274
  CLUS_2                         6                         148
  CLUS_3                         1                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 63(XQ24) MUTATED        1      3      1      0
  AMP PEAK 63(XQ24) WILD-TYPE     63     61     41     49
D60V3, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         1                          63
  CLUS_2                         3                          61
  CLUS_3                         1                          41
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 63(XQ24) MUTATED        2      0      1      1      0      1      0
  AMP PEAK 63(XQ24) WILD-TYPE     44     28     32     28     47     26      9
D60V4, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         2                          44
  CLUS_2                         0                          28
  CLUS_3                         1                          32
  CLUS_4                         1                          28
  CLUS_5                         0                          47
  CLUS_6                         1                          26
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 63(XQ24) MUTATED        3      6      0      0
  AMP PEAK 63(XQ24) WILD-TYPE    165    149     58    116
D60V5, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         3                         165
  CLUS_2                         6                         149
  CLUS_3                         0                          58
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 63(XQ24) MUTATED        2      6      0      0      1
  AMP PEAK 63(XQ24) WILD-TYPE    102    128     86     95     77
D60V6, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         2                         102
  CLUS_2                         6                         128
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 63(XQ24) MUTATED        3      5      1
  AMP PEAK 63(XQ24) WILD-TYPE    178    146    165
D60V7, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         3                         178
  CLUS_2                         5                         146
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 63(XQ24) MUTATED        3      5      1
  AMP PEAK 63(XQ24) WILD-TYPE    175    123    191
D60V8, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         3                         175
  CLUS_2                         5                         123
  CLUS_3                         1                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 63(XQ24) MUTATED        3      3      2
  AMP PEAK 63(XQ24) WILD-TYPE    156    161    143
D60V9, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         3                         156
  CLUS_2                         3                         161
  CLUS_3                         2                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 63(XQ24) MUTATED        3      4      1
  AMP PEAK 63(XQ24) WILD-TYPE    161    122    177
D60V10, multiclass
        clus
vv       AMP PEAK 63(XQ24) MUTATED AMP PEAK 63(XQ24) WILD-TYPE
  CLUS_1                         3                         161
  CLUS_2                         4                         122
  CLUS_3                         1                         177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = AMP PEAK 64(XQ24) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 64(XQ24) MUTATED        7      2      0
  AMP PEAK 64(XQ24) WILD-TYPE     49    358     83
D61V1, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         7                          49
  CLUS_2                         2                         358
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 64(XQ24) MUTATED        2      6      1
  AMP PEAK 64(XQ24) WILD-TYPE    274    148     68
D61V2, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         2                         274
  CLUS_2                         6                         148
  CLUS_3                         1                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 64(XQ24) MUTATED        2      2      1      0
  AMP PEAK 64(XQ24) WILD-TYPE     62     62     41     49
D61V3, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         2                          62
  CLUS_2                         2                          62
  CLUS_3                         1                          41
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 64(XQ24) MUTATED        2      1      0      1      0      1      0
  AMP PEAK 64(XQ24) WILD-TYPE     44     27     33     28     47     26      9
D61V4, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         2                          44
  CLUS_2                         1                          27
  CLUS_3                         0                          33
  CLUS_4                         1                          28
  CLUS_5                         0                          47
  CLUS_6                         1                          26
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 64(XQ24) MUTATED        2      6      0      1
  AMP PEAK 64(XQ24) WILD-TYPE    166    149     58    115
D61V5, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         2                         166
  CLUS_2                         6                         149
  CLUS_3                         0                          58
  CLUS_4                         1                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 64(XQ24) MUTATED        2      6      0      0      1
  AMP PEAK 64(XQ24) WILD-TYPE    102    128     86     95     77
D61V6, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         2                         102
  CLUS_2                         6                         128
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 64(XQ24) MUTATED        3      5      1
  AMP PEAK 64(XQ24) WILD-TYPE    178    146    165
D61V7, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         3                         178
  CLUS_2                         5                         146
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 64(XQ24) MUTATED        3      5      1
  AMP PEAK 64(XQ24) WILD-TYPE    175    123    191
D61V8, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         3                         175
  CLUS_2                         5                         123
  CLUS_3                         1                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 64(XQ24) MUTATED        3      3      2
  AMP PEAK 64(XQ24) WILD-TYPE    156    161    143
D61V9, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         3                         156
  CLUS_2                         3                         161
  CLUS_3                         2                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 64(XQ24) MUTATED        3      4      1
  AMP PEAK 64(XQ24) WILD-TYPE    161    122    177
D61V10, multiclass
        clus
vv       AMP PEAK 64(XQ24) MUTATED AMP PEAK 64(XQ24) WILD-TYPE
  CLUS_1                         3                         161
  CLUS_2                         4                         122
  CLUS_3                         1                         177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = AMP PEAK 65(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 65(XQ28) MUTATED        7      3      0
  AMP PEAK 65(XQ28) WILD-TYPE     49    357     83
D62V1, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         7                          49
  CLUS_2                         3                         357
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 65(XQ28) MUTATED        3      6      1
  AMP PEAK 65(XQ28) WILD-TYPE    273    148     68
D62V2, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         3                         273
  CLUS_2                         6                         148
  CLUS_3                         1                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 65(XQ28) MUTATED        1      3      1      0
  AMP PEAK 65(XQ28) WILD-TYPE     63     61     41     49
D62V3, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         1                          63
  CLUS_2                         3                          61
  CLUS_3                         1                          41
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 65(XQ28) MUTATED        2      0      0      1      0      2      0
  AMP PEAK 65(XQ28) WILD-TYPE     44     28     33     28     47     25      9
D62V4, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         2                          44
  CLUS_2                         0                          28
  CLUS_3                         0                          33
  CLUS_4                         1                          28
  CLUS_5                         0                          47
  CLUS_6                         2                          25
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 65(XQ28) MUTATED        3      6      0      1
  AMP PEAK 65(XQ28) WILD-TYPE    165    149     58    115
D62V5, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         3                         165
  CLUS_2                         6                         149
  CLUS_3                         0                          58
  CLUS_4                         1                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 65(XQ28) MUTATED        2      6      0      1      1
  AMP PEAK 65(XQ28) WILD-TYPE    102    128     86     94     77
D62V6, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         2                         102
  CLUS_2                         6                         128
  CLUS_3                         0                          86
  CLUS_4                         1                          94
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 65(XQ28) MUTATED        3      5      2
  AMP PEAK 65(XQ28) WILD-TYPE    178    146    164
D62V7, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         3                         178
  CLUS_2                         5                         146
  CLUS_3                         2                         164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 65(XQ28) MUTATED        3      5      2
  AMP PEAK 65(XQ28) WILD-TYPE    175    123    190
D62V8, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         3                         175
  CLUS_2                         5                         123
  CLUS_3                         2                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 65(XQ28) MUTATED        3      4      2
  AMP PEAK 65(XQ28) WILD-TYPE    156    160    143
D62V9, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         3                         156
  CLUS_2                         4                         160
  CLUS_3                         2                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 65(XQ28) MUTATED        3      4      2
  AMP PEAK 65(XQ28) WILD-TYPE    161    122    176
D62V10, multiclass
        clus
vv       AMP PEAK 65(XQ28) MUTATED AMP PEAK 65(XQ28) WILD-TYPE
  CLUS_1                         3                         161
  CLUS_2                         4                         122
  CLUS_3                         2                         176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK  1(1Q24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE     53    360     83
D63V1, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           0                           360
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    276    151     69
D63V2, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                           3                           151
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q24.2) MUTATED        1      0      1      0
  DEL PEAK  1(1Q24.2) WILD-TYPE     63     64     41     49
D63V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  1(1Q24.2) MUTATED"
clus
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A22I 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39P 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1Q24.2) MUTATED        1      0      0      1      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE     45     28     33     28     47     27
                               vv
clus                            CLUS_7
  DEL PEAK  1(1Q24.2) MUTATED        0
  DEL PEAK  1(1Q24.2) WILD-TYPE      9
D63V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  1(1Q24.2) MUTATED"
clus
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A22I 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39P 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    168    152     58    116
D63V5, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           3                           152
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    104    131     86     95     78
D63V6, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           3                           131
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    181    148    166
D63V7, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                           3                           148
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    178    125    192
D63V8, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                           3                           125
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        1      1      1
  DEL PEAK  1(1Q24.2) WILD-TYPE    158    163    144
D63V9, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           1                           163
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        1      2      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    163    124    178
D63V10, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           2                           124
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK  2(1Q42.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        3      2      0
  DEL PEAK  2(1Q42.13) WILD-TYPE     53    358     83
D64V1, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                            2                            358
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        1      3      1
  DEL PEAK  2(1Q42.13) WILD-TYPE    275    151     68
D64V2, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            3                            151
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q42.13) MUTATED        2      0      2      0
  DEL PEAK  2(1Q42.13) WILD-TYPE     62     64     40     49
D64V3, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            0                             64
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q42.13) MUTATED        1      1      0      1      1      0
  DEL PEAK  2(1Q42.13) WILD-TYPE     45     27     33     28     46     27
                                vv
clus                             CLUS_7
  DEL PEAK  2(1Q42.13) MUTATED        0
  DEL PEAK  2(1Q42.13) WILD-TYPE      9
D64V4, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            1                             46
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q42.13) MUTATED        0      4      1      0
  DEL PEAK  2(1Q42.13) WILD-TYPE    168    151     57    116
D64V5, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            4                            151
  CLUS_3                            1                             57
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q42.13) MUTATED        1      4      0      0      0
  DEL PEAK  2(1Q42.13) WILD-TYPE    103    130     86     95     78
D64V6, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            4                            130
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        1      4      0
  DEL PEAK  2(1Q42.13) WILD-TYPE    180    147    166
D64V7, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            4                            147
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        1      3      1
  DEL PEAK  2(1Q42.13) WILD-TYPE    177    125    191
D64V8, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            3                            125
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        2      1      1
  DEL PEAK  2(1Q42.13) WILD-TYPE    157    163    144
D64V9, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            1                            163
  CLUS_3                            1                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        2      2      0
  DEL PEAK  2(1Q42.13) WILD-TYPE    162    124    178
D64V10, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            2                            124
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK  3(2P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P23.1) MUTATED        9      1      2
  DEL PEAK  3(2P23.1) WILD-TYPE     47    359     81
D65V1, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           9                            47
  CLUS_2                           1                           359
  CLUS_3                           2                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P23.1) MUTATED        0     11      1
  DEL PEAK  3(2P23.1) WILD-TYPE    276    143     68
D65V2, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                          11                           143
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P23.1) MUTATED        2      3      0      1
  DEL PEAK  3(2P23.1) WILD-TYPE     62     61     42     48
D65V3, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           3                            61
  CLUS_3                           0                            42
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P23.1) MUTATED        2      0      0      1      0      3
  DEL PEAK  3(2P23.1) WILD-TYPE     44     28     33     28     47     24
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P23.1) MUTATED        0
  DEL PEAK  3(2P23.1) WILD-TYPE      9
D65V4, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P23.1) MUTATED        0     12      0      0
  DEL PEAK  3(2P23.1) WILD-TYPE    168    143     58    116
D65V5, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                          12                           143
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P23.1) MUTATED        0     11      1      0      0
  DEL PEAK  3(2P23.1) WILD-TYPE    104    123     85     95     78
D65V6, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                          11                           123
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P23.1) MUTATED        0     12      0
  DEL PEAK  3(2P23.1) WILD-TYPE    181    139    166
D65V7, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                          12                           139
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P23.1) MUTATED        0     11      1
  DEL PEAK  3(2P23.1) WILD-TYPE    178    117    191
D65V8, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                          11                           117
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P23.1) MUTATED        1      5      3
  DEL PEAK  3(2P23.1) WILD-TYPE    158    159    142
D65V9, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           5                           159
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P23.1) MUTATED        1      8      0
  DEL PEAK  3(2P23.1) WILD-TYPE    163    118    178
D65V10, multiclass
        clus
vv       DEL PEAK  3(2P23.1) MUTATED DEL PEAK  3(2P23.1) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           8                           118
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       10      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     46    360     83
D66V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          10                            46
  CLUS_2                           0                           360
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        0     10      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    276    144     69
D66V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                          10                           144
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        2      3      1      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     62     61     41     49
D66V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           3                            61
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        2      0      0      1      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     44     28     33     28     47     24
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED        0
  DEL PEAK  4(2Q22.1) WILD-TYPE      9
D66V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0     10      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    168    145     58    116
D66V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                          10                           145
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0     10      0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    104    124     86     95     78
D66V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                          10                           124
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        0     10      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    181    141    166
D66V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                          10                           141
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        0     10      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    178    118    192
D66V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                          10                           118
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        1      5      2
  DEL PEAK  4(2Q22.1) WILD-TYPE    158    159    143
D66V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           5                           159
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        1      7      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    163    119    178
D66V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           7                           119
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       11      2      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     45    358     83
D67V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          11                            45
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        0     12      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    276    142     68
D67V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                          12                           142
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        2      4      2      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     62     60     40     48
D67V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           4                            60
  CLUS_3                           2                            40
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        3      0      0      1      1      4
  DEL PEAK  5(2Q37.3) WILD-TYPE     43     28     33     28     46     23
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        0
  DEL PEAK  5(2Q37.3) WILD-TYPE      9
D67V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           1                            46
  CLUS_6                           4                            23
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        0     12      0      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    168    143     58    115
D67V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                          12                           143
  CLUS_3                           0                            58
  CLUS_4                           1                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        0     12      1      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE    104    122     85     95     78
D67V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                          12                           122
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        1     12      0
  DEL PEAK  5(2Q37.3) WILD-TYPE    180    139    166
D67V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                           180
  CLUS_2                          12                           139
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        0     12      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    178    116    191
D67V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                          12                           116
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        1      7      3
  DEL PEAK  5(2Q37.3) WILD-TYPE    158    157    142
D67V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                           158
  CLUS_2                           7                           157
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        1      9      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    163    117    177
D67V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                           163
  CLUS_2                           9                           117
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        3      2      0
  DEL PEAK  7(4Q34.3) WILD-TYPE     53    358     83
D68V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        1      3      1
  DEL PEAK  7(4Q34.3) WILD-TYPE    275    151     68
D68V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           1                           275
  CLUS_2                           3                           151
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        2      1      1      0
  DEL PEAK  7(4Q34.3) WILD-TYPE     62     63     41     49
D68V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           1                            63
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED        2      0      0      1      0      1
  DEL PEAK  7(4Q34.3) WILD-TYPE     44     28     33     28     47     26
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q34.3) MUTATED        0
  DEL PEAK  7(4Q34.3) WILD-TYPE      9
D68V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        1      3      1      0
  DEL PEAK  7(4Q34.3) WILD-TYPE    167    152     57    116
D68V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           1                           167
  CLUS_2                           3                           152
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q34.3) MUTATED        1      3      1      0      0
  DEL PEAK  7(4Q34.3) WILD-TYPE    103    131     85     95     78
D68V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           3                           131
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        2      3      0
  DEL PEAK  7(4Q34.3) WILD-TYPE    179    148    166
D68V7, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           3                           148
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        2      3      0
  DEL PEAK  7(4Q34.3) WILD-TYPE    176    125    192
D68V8, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           3                           125
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        2      2      1
  DEL PEAK  7(4Q34.3) WILD-TYPE    157    162    144
D68V9, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                           157
  CLUS_2                           2                           162
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        2      3      0
  DEL PEAK  7(4Q34.3) WILD-TYPE    162    123    178
D68V10, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                           162
  CLUS_2                           3                           123
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK  8(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.2) MUTATED        2      2      0
  DEL PEAK  8(5P15.2) WILD-TYPE     54    358     83
D69V1, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           2                           358
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.2) MUTATED        4      0      0
  DEL PEAK  8(5P15.2) WILD-TYPE    272    154     69
D69V2, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           4                           272
  CLUS_2                           0                           154
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.2) MUTATED        0      0      0      0
  DEL PEAK  8(5P15.2) WILD-TYPE     64     64     42     49
D69V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P15.2) MUTATED        0      0      0      0      0      0
  DEL PEAK  8(5P15.2) WILD-TYPE     46     28     33     29     47     27
                               vv
clus                            CLUS_7
  DEL PEAK  8(5P15.2) MUTATED        0
  DEL PEAK  8(5P15.2) WILD-TYPE      9
D69V4, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.2) MUTATED        2      0      0      2
  DEL PEAK  8(5P15.2) WILD-TYPE    166    155     58    114
D69V5, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                           166
  CLUS_2                           0                           155
  CLUS_3                           0                            58
  CLUS_4                           2                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5P15.2) MUTATED        2      0      1      0      1
  DEL PEAK  8(5P15.2) WILD-TYPE    102    134     85     95     77
D69V6, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                           0                           134
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.2) MUTATED        2      0      2
  DEL PEAK  8(5P15.2) WILD-TYPE    179    151    164
D69V7, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                           179
  CLUS_2                           0                           151
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.2) MUTATED        2      0      2
  DEL PEAK  8(5P15.2) WILD-TYPE    176    128    190
D69V8, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           0                           128
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.2) MUTATED        2      0      2
  DEL PEAK  8(5P15.2) WILD-TYPE    157    164    143
D69V9, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                           157
  CLUS_2                           0                           164
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.2) MUTATED        2      0      2
  DEL PEAK  8(5P15.2) WILD-TYPE    162    126    176
D69V10, multiclass
        clus
vv       DEL PEAK  8(5P15.2) MUTATED DEL PEAK  8(5P15.2) WILD-TYPE
  CLUS_1                           2                           162
  CLUS_2                           0                           126
  CLUS_3                           2                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 11(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        6      1      0
  DEL PEAK 11(6Q22.31) WILD-TYPE     50    359     83
D70V1, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                            1                            359
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        0      6      1
  DEL PEAK 11(6Q22.31) WILD-TYPE    276    148     68
D70V2, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            0                            276
  CLUS_2                            6                            148
  CLUS_3                            1                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED        1      0      3      1
  DEL PEAK 11(6Q22.31) WILD-TYPE     63     64     39     48
D70V3, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            0                             64
  CLUS_3                            3                             39
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q22.31) MUTATED        2      0      0      2      1      0
  DEL PEAK 11(6Q22.31) WILD-TYPE     44     28     33     27     46     27
                                vv
clus                             CLUS_7
  DEL PEAK 11(6Q22.31) MUTATED        0
  DEL PEAK 11(6Q22.31) WILD-TYPE      9
D70V4, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            1                             46
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED        1      6      0      0
  DEL PEAK 11(6Q22.31) WILD-TYPE    167    149     58    116
D70V5, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            6                            149
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q22.31) MUTATED        1      6      0      0      0
  DEL PEAK 11(6Q22.31) WILD-TYPE    103    128     86     95     78
D70V6, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            6                            128
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        1      6      0
  DEL PEAK 11(6Q22.31) WILD-TYPE    180    145    166
D70V7, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            6                            145
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        1      6      0
  DEL PEAK 11(6Q22.31) WILD-TYPE    177    122    192
D70V8, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            6                            122
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        2      3      2
  DEL PEAK 11(6Q22.31) WILD-TYPE    157    161    143
D70V9, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            3                            161
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        2      5      0
  DEL PEAK 11(6Q22.31) WILD-TYPE    162    121    178
D70V10, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            5                            121
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 13(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED        0      3      1
  DEL PEAK 13(7Q34) WILD-TYPE     56    357     82
D71V1, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         0                          56
  CLUS_2                         3                         357
  CLUS_3                         1                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED        2      2      0
  DEL PEAK 13(7Q34) WILD-TYPE    274    152     69
D71V2, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         2                         274
  CLUS_2                         2                         152
  CLUS_3                         0                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q34) MUTATED        0      1      0      0
  DEL PEAK 13(7Q34) WILD-TYPE     64     63     42     49
D71V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 13(7Q34) MUTATED"
clus
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                          1                         218 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-EL-A3CL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(7Q34) MUTATED        0      0      1      0      0      0      0
  DEL PEAK 13(7Q34) WILD-TYPE     46     28     32     29     47     27      9
D71V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 13(7Q34) MUTATED"
clus
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                          1                         218 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-EL-A3CL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK 13(7Q34) WILD-TYPE" "DEL PEAK 13(7Q34) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q34) MUTATED        1      2      0      0
  DEL PEAK 13(7Q34) WILD-TYPE    167    153     58    116
D71V5, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         1                         167
  CLUS_2                         2                         153
  CLUS_3                         0                          58
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q34) MUTATED        0      1      1      0      1
  DEL PEAK 13(7Q34) WILD-TYPE    104    133     85     95     77
D71V6, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         1                         133
  CLUS_3                         1                          85
  CLUS_4                         0                          95
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED        1      2      1
  DEL PEAK 13(7Q34) WILD-TYPE    180    149    165
D71V7, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         1                         180
  CLUS_2                         2                         149
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED        1      1      2
  DEL PEAK 13(7Q34) WILD-TYPE    177    127    190
D71V8, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         1                         177
  CLUS_2                         1                         127
  CLUS_3                         2                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED        1      3      0
  DEL PEAK 13(7Q34) WILD-TYPE    158    161    145
D71V9, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         1                         158
  CLUS_2                         3                         161
  CLUS_3                         0                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED        1      1      2
  DEL PEAK 13(7Q34) WILD-TYPE    163    125    176
D71V10, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                         1                         163
  CLUS_2                         1                         125
  CLUS_3                         2                         176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        4      0      0
  DEL PEAK 14(8P23.2) WILD-TYPE     52    360     83
D72V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           4                            52
  CLUS_2                           0                           360
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        0      4      0
  DEL PEAK 14(8P23.2) WILD-TYPE    276    150     69
D72V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                           4                           150
  CLUS_3                           0                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        1      1      0      0
  DEL PEAK 14(8P23.2) WILD-TYPE     63     63     42     49
D72V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(8P23.2) MUTATED"
clus
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK 14(8P23.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED        1      0      0      0      0      1
  DEL PEAK 14(8P23.2) WILD-TYPE     45     28     33     29     47     26
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.2) MUTATED        0
  DEL PEAK 14(8P23.2) WILD-TYPE      9
D72V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(8P23.2) MUTATED"
clus
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK 14(8P23.2) WILD-TYPE" "DEL PEAK 14(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK 14(8P23.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        0      4      0      0
  DEL PEAK 14(8P23.2) WILD-TYPE    168    151     58    116
D72V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           4                           151
  CLUS_3                           0                            58
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED        0      4      0      0      0
  DEL PEAK 14(8P23.2) WILD-TYPE    104    130     86     95     78
D72V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           4                           130
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        0      4      0
  DEL PEAK 14(8P23.2) WILD-TYPE    181    147    166
D72V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                           4                           147
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        0      4      0
  DEL PEAK 14(8P23.2) WILD-TYPE    178    124    192
D72V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                           4                           124
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        0      3      0
  DEL PEAK 14(8P23.2) WILD-TYPE    159    161    145
D72V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           159
  CLUS_2                           3                           161
  CLUS_3                           0                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        0      3      0
  DEL PEAK 14(8P23.2) WILD-TYPE    164    123    178
D72V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                           164
  CLUS_2                           3                           123
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 15(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P22) MUTATED        4      0      0
  DEL PEAK 15(8P22) WILD-TYPE     52    360     83
D73V1, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         4                          52
  CLUS_2                         0                         360
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P22) MUTATED        0      4      0
  DEL PEAK 15(8P22) WILD-TYPE    276    150     69
D73V2, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         276
  CLUS_2                         4                         150
  CLUS_3                         0                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P22) MUTATED        1      1      0      0
  DEL PEAK 15(8P22) WILD-TYPE     63     63     42     49
D73V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 15(8P22) MUTATED"
clus
  DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 15(8P22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(8P22) MUTATED        1      0      0      0      0      1      0
  DEL PEAK 15(8P22) WILD-TYPE     45     28     33     29     47     26      9
D73V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 15(8P22) MUTATED"
clus
  DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 15(8P22) WILD-TYPE" "DEL PEAK 15(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 15(8P22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P22) MUTATED        0      4      0      0
  DEL PEAK 15(8P22) WILD-TYPE    168    151     58    116
D73V5, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         168
  CLUS_2                         4                         151
  CLUS_3                         0                          58
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P22) MUTATED        0      4      0      0      0
  DEL PEAK 15(8P22) WILD-TYPE    104    130     86     95     78
D73V6, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         4                         130
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P22) MUTATED        0      4      0
  DEL PEAK 15(8P22) WILD-TYPE    181    147    166
D73V7, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         181
  CLUS_2                         4                         147
  CLUS_3                         0                         166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P22) MUTATED        0      4      0
  DEL PEAK 15(8P22) WILD-TYPE    178    124    192
D73V8, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         178
  CLUS_2                         4                         124
  CLUS_3                         0                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P22) MUTATED        0      3      0
  DEL PEAK 15(8P22) WILD-TYPE    159    161    145
D73V9, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         159
  CLUS_2                         3                         161
  CLUS_3                         0                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P22) MUTATED        0      3      0
  DEL PEAK 15(8P22) WILD-TYPE    164    123    178
D73V10, multiclass
        clus
vv       DEL PEAK 15(8P22) MUTATED DEL PEAK 15(8P22) WILD-TYPE
  CLUS_1                         0                         164
  CLUS_2                         3                         123
  CLUS_3                         0                         178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 16(8P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P12) MUTATED        4      0      0
  DEL PEAK 16(8P12) WILD-TYPE     52    360     83
D74V1, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         4                          52
  CLUS_2                         0                         360
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P12) MUTATED        0      4      0
  DEL PEAK 16(8P12) WILD-TYPE    276    150     69
D74V2, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         276
  CLUS_2                         4                         150
  CLUS_3                         0                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P12) MUTATED        1      1      0      0
  DEL PEAK 16(8P12) WILD-TYPE     63     63     42     49
D74V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 16(8P12) MUTATED"
clus
  DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 16(8P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(8P12) MUTATED        1      0      0      0      0      1      0
  DEL PEAK 16(8P12) WILD-TYPE     45     28     33     29     47     26      9
D74V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 16(8P12) MUTATED"
clus
  DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 16(8P12) WILD-TYPE" "DEL PEAK 16(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 16(8P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P12) MUTATED        0      4      0      0
  DEL PEAK 16(8P12) WILD-TYPE    168    151     58    116
D74V5, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         168
  CLUS_2                         4                         151
  CLUS_3                         0                          58
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P12) MUTATED        0      4      0      0      0
  DEL PEAK 16(8P12) WILD-TYPE    104    130     86     95     78
D74V6, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         4                         130
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P12) MUTATED        0      4      0
  DEL PEAK 16(8P12) WILD-TYPE    181    147    166
D74V7, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         181
  CLUS_2                         4                         147
  CLUS_3                         0                         166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P12) MUTATED        0      4      0
  DEL PEAK 16(8P12) WILD-TYPE    178    124    192
D74V8, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         178
  CLUS_2                         4                         124
  CLUS_3                         0                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P12) MUTATED        0      3      0
  DEL PEAK 16(8P12) WILD-TYPE    159    161    145
D74V9, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         159
  CLUS_2                         3                         161
  CLUS_3                         0                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P12) MUTATED        0      3      0
  DEL PEAK 16(8P12) WILD-TYPE    164    123    178
D74V10, multiclass
        clus
vv       DEL PEAK 16(8P12) MUTATED DEL PEAK 16(8P12) WILD-TYPE
  CLUS_1                         0                         164
  CLUS_2                         3                         123
  CLUS_3                         0                         178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 17(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8Q24.22) MUTATED        5      2      0
  DEL PEAK 17(8Q24.22) WILD-TYPE     51    358     83
D75V1, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            2                            358
  CLUS_3                            0                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8Q24.22) MUTATED        0      7      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    276    147     69
D75V2, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            276
  CLUS_2                            7                            147
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8Q24.22) MUTATED        1      2      1      0
  DEL PEAK 17(8Q24.22) WILD-TYPE     63     62     41     49
D75V3, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            1                             41
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(8Q24.22) MUTATED        2      0      0      0      0      2
  DEL PEAK 17(8Q24.22) WILD-TYPE     44     28     33     29     47     25
                                vv
clus                             CLUS_7
  DEL PEAK 17(8Q24.22) MUTATED        0
  DEL PEAK 17(8Q24.22) WILD-TYPE      9
D75V4, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            2                             25
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8Q24.22) MUTATED        0      7      0      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    168    148     58    116
D75V5, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            7                            148
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8Q24.22) MUTATED        0      7      0      0      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    104    127     86     95     78
D75V6, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            7                            127
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8Q24.22) MUTATED        0      7      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    181    144    166
D75V7, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            181
  CLUS_2                            7                            144
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8Q24.22) MUTATED        0      7      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    178    121    192
D75V8, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            7                            121
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8Q24.22) MUTATED        0      6      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    159    158    145
D75V9, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            159
  CLUS_2                            6                            158
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8Q24.22) MUTATED        0      6      0
  DEL PEAK 17(8Q24.22) WILD-TYPE    164    120    178
D75V10, multiclass
        clus
vv       DEL PEAK 17(8Q24.22) MUTATED DEL PEAK 17(8Q24.22) WILD-TYPE
  CLUS_1                            0                            164
  CLUS_2                            6                            120
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 18(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       16      2      2
  DEL PEAK 18(9P21.3) WILD-TYPE     40    358     81
D76V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          16                            40
  CLUS_2                           2                           358
  CLUS_3                           2                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        5     12      3
  DEL PEAK 18(9P21.3) WILD-TYPE    271    142     66
D76V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           5                           271
  CLUS_2                          12                           142
  CLUS_3                           3                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED        1      2      1      2
  DEL PEAK 18(9P21.3) WILD-TYPE     63     62     41     47
D76V3, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           2                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED        1      0      0      1      2      2
  DEL PEAK 18(9P21.3) WILD-TYPE     45     28     33     28     45     25
                               vv
clus                            CLUS_7
  DEL PEAK 18(9P21.3) MUTATED        0
  DEL PEAK 18(9P21.3) WILD-TYPE      9
D76V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           2                            45
  CLUS_6                           2                            25
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED        3     12      3      2
  DEL PEAK 18(9P21.3) WILD-TYPE    165    143     55    114
D76V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           3                           165
  CLUS_2                          12                           143
  CLUS_3                           3                            55
  CLUS_4                           2                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED        4     12      1      2      1
  DEL PEAK 18(9P21.3) WILD-TYPE    100    122     85     93     77
D76V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           4                           100
  CLUS_2                          12                           122
  CLUS_3                           1                            85
  CLUS_4                           2                            93
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        9     11      0
  DEL PEAK 18(9P21.3) WILD-TYPE    172    140    166
D76V7, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           9                           172
  CLUS_2                          11                           140
  CLUS_3                           0                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        8     11      1
  DEL PEAK 18(9P21.3) WILD-TYPE    170    117    191
D76V8, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           8                           170
  CLUS_2                          11                           117
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        8      3      7
  DEL PEAK 18(9P21.3) WILD-TYPE    151    161    138
D76V9, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           8                           151
  CLUS_2                           3                           161
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        8     10      0
  DEL PEAK 18(9P21.3) WILD-TYPE    156    116    178
D76V10, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           8                           156
  CLUS_2                          10                           116
  CLUS_3                           0                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 19(9Q22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q22.33) MUTATED       21      3      3
  DEL PEAK 19(9Q22.33) WILD-TYPE     35    357     80
D77V1, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                           21                             35
  CLUS_2                            3                            357
  CLUS_3                            3                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q22.33) MUTATED       10     13      4
  DEL PEAK 19(9Q22.33) WILD-TYPE    266    141     65
D77V2, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                           10                            266
  CLUS_2                           13                            141
  CLUS_3                            4                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q22.33) MUTATED        1      4      1      2
  DEL PEAK 19(9Q22.33) WILD-TYPE     63     60     41     47
D77V3, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            4                             60
  CLUS_3                            1                             41
  CLUS_4                            2                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q22.33) MUTATED        1      0      0      1      2      4
  DEL PEAK 19(9Q22.33) WILD-TYPE     45     28     33     28     45     23
                                vv
clus                             CLUS_7
  DEL PEAK 19(9Q22.33) MUTATED        0
  DEL PEAK 19(9Q22.33) WILD-TYPE      9
D77V4, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            2                             45
  CLUS_6                            4                             23
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q22.33) MUTATED        7     13      4      3
  DEL PEAK 19(9Q22.33) WILD-TYPE    161    142     54    113
D77V5, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                            7                            161
  CLUS_2                           13                            142
  CLUS_3                            4                             54
  CLUS_4                            3                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q22.33) MUTATED        8     13      1      3      2
  DEL PEAK 19(9Q22.33) WILD-TYPE     96    121     85     92     76
D77V6, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                            8                             96
  CLUS_2                           13                            121
  CLUS_3                            1                             85
  CLUS_4                            3                             92
  CLUS_5                            2                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q22.33) MUTATED       13     12      2
  DEL PEAK 19(9Q22.33) WILD-TYPE    168    139    164
D77V7, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                           13                            168
  CLUS_2                           12                            139
  CLUS_3                            2                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q22.33) MUTATED       12     12      3
  DEL PEAK 19(9Q22.33) WILD-TYPE    166    116    189
D77V8, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                           12                            166
  CLUS_2                           12                            116
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q22.33) MUTATED       12      5      8
  DEL PEAK 19(9Q22.33) WILD-TYPE    147    159    137
D77V9, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                           12                            147
  CLUS_2                            5                            159
  CLUS_3                            8                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q22.33) MUTATED       12     11      2
  DEL PEAK 19(9Q22.33) WILD-TYPE    152    115    176
D77V10, multiclass
        clus
vv       DEL PEAK 19(9Q22.33) MUTATED DEL PEAK 19(9Q22.33) WILD-TYPE
  CLUS_1                           12                            152
  CLUS_2                           11                            115
  CLUS_3                            2                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 20(10P12.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P12.31) MUTATED        6      0      1
  DEL PEAK 20(10P12.31) WILD-TYPE     50    360     82
D78V1, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             6                              50
  CLUS_2                             0                             360
  CLUS_3                             1                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P12.31) MUTATED        1      6      0
  DEL PEAK 20(10P12.31) WILD-TYPE    275    148     69
D78V2, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             1                             275
  CLUS_2                             6                             148
  CLUS_3                             0                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P12.31) MUTATED        1      0      1      1
  DEL PEAK 20(10P12.31) WILD-TYPE     63     64     41     48
D78V3, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             1                              63
  CLUS_2                             0                              64
  CLUS_3                             1                              41
  CLUS_4                             1                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10P12.31) MUTATED        1      0      0      2      0      0
  DEL PEAK 20(10P12.31) WILD-TYPE     45     28     33     27     47     27
                                 vv
clus                              CLUS_7
  DEL PEAK 20(10P12.31) MUTATED        0
  DEL PEAK 20(10P12.31) WILD-TYPE      9
D78V4, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             1                              45
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             2                              27
  CLUS_5                             0                              47
  CLUS_6                             0                              27
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P12.31) MUTATED        0      6      0      1
  DEL PEAK 20(10P12.31) WILD-TYPE    168    149     58    115
D78V5, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             0                             168
  CLUS_2                             6                             149
  CLUS_3                             0                              58
  CLUS_4                             1                             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P12.31) MUTATED        0      6      0      1      0
  DEL PEAK 20(10P12.31) WILD-TYPE    104    128     86     94     78
D78V6, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                             6                             128
  CLUS_3                             0                              86
  CLUS_4                             1                              94
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P12.31) MUTATED        1      6      0
  DEL PEAK 20(10P12.31) WILD-TYPE    180    145    166
D78V7, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             1                             180
  CLUS_2                             6                             145
  CLUS_3                             0                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P12.31) MUTATED        1      6      0
  DEL PEAK 20(10P12.31) WILD-TYPE    177    122    192
D78V8, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             1                             177
  CLUS_2                             6                             122
  CLUS_3                             0                             192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P12.31) MUTATED        2      2      3
  DEL PEAK 20(10P12.31) WILD-TYPE    157    162    142
D78V9, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             2                             157
  CLUS_2                             2                             162
  CLUS_3                             3                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P12.31) MUTATED        2      5      0
  DEL PEAK 20(10P12.31) WILD-TYPE    162    121    178
D78V10, multiclass
        clus
vv       DEL PEAK 20(10P12.31) MUTATED DEL PEAK 20(10P12.31) WILD-TYPE
  CLUS_1                             2                             162
  CLUS_2                             5                             121
  CLUS_3                             0                             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 21(10Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q21.2) MUTATED        6      5      1
  DEL PEAK 21(10Q21.2) WILD-TYPE     50    355     82
D79V1, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                            5                            355
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q21.2) MUTATED        3      6      3
  DEL PEAK 21(10Q21.2) WILD-TYPE    273    148     66
D79V2, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            3                            273
  CLUS_2                            6                            148
  CLUS_3                            3                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q21.2) MUTATED        3      0      2      1
  DEL PEAK 21(10Q21.2) WILD-TYPE     61     64     40     48
D79V3, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            0                             64
  CLUS_3                            2                             40
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q21.2) MUTATED        2      1      0      2      1      0
  DEL PEAK 21(10Q21.2) WILD-TYPE     44     27     33     27     46     27
                                vv
clus                             CLUS_7
  DEL PEAK 21(10Q21.2) MUTATED        0
  DEL PEAK 21(10Q21.2) WILD-TYPE      9
D79V4, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            1                             46
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q21.2) MUTATED        0      7      2      3
  DEL PEAK 21(10Q21.2) WILD-TYPE    168    148     56    113
D79V5, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            7                            148
  CLUS_3                            2                             56
  CLUS_4                            3                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q21.2) MUTATED        0      6      3      3      0
  DEL PEAK 21(10Q21.2) WILD-TYPE    104    128     83     92     78
D79V6, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            6                            128
  CLUS_3                            3                             83
  CLUS_4                            3                             92
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q21.2) MUTATED        3      7      2
  DEL PEAK 21(10Q21.2) WILD-TYPE    178    144    164
D79V7, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            3                            178
  CLUS_2                            7                            144
  CLUS_3                            2                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q21.2) MUTATED        3      6      3
  DEL PEAK 21(10Q21.2) WILD-TYPE    175    122    189
D79V8, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            6                            122
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q21.2) MUTATED        5      5      2
  DEL PEAK 21(10Q21.2) WILD-TYPE    154    159    143
D79V9, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            5                            154
  CLUS_2                            5                            159
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q21.2) MUTATED        5      6      1
  DEL PEAK 21(10Q21.2) WILD-TYPE    159    120    177
D79V10, multiclass
        clus
vv       DEL PEAK 21(10Q21.2) MUTATED DEL PEAK 21(10Q21.2) WILD-TYPE
  CLUS_1                            5                            159
  CLUS_2                            6                            120
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 22(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q23.31) MUTATED        7      4      1
  DEL PEAK 22(10Q23.31) WILD-TYPE     49    356     82
D80V1, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             7                              49
  CLUS_2                             4                             356
  CLUS_3                             1                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q23.31) MUTATED        2      9      1
  DEL PEAK 22(10Q23.31) WILD-TYPE    274    145     68
D80V2, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             2                             274
  CLUS_2                             9                             145
  CLUS_3                             1                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10Q23.31) MUTATED        5      0      1      0
  DEL PEAK 22(10Q23.31) WILD-TYPE     59     64     41     49
D80V3, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             5                              59
  CLUS_2                             0                              64
  CLUS_3                             1                              41
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10Q23.31) MUTATED        4      1      0      1      0      0
  DEL PEAK 22(10Q23.31) WILD-TYPE     42     27     33     28     47     27
                                 vv
clus                              CLUS_7
  DEL PEAK 22(10Q23.31) MUTATED        0
  DEL PEAK 22(10Q23.31) WILD-TYPE      9
D80V4, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             4                              42
  CLUS_2                             1                              27
  CLUS_3                             0                              33
  CLUS_4                             1                              28
  CLUS_5                             0                              47
  CLUS_6                             0                              27
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10Q23.31) MUTATED        0     10      0      2
  DEL PEAK 22(10Q23.31) WILD-TYPE    168    145     58    114
D80V5, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             0                             168
  CLUS_2                            10                             145
  CLUS_3                             0                              58
  CLUS_4                             2                             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10Q23.31) MUTATED        0      9      1      2      0
  DEL PEAK 22(10Q23.31) WILD-TYPE    104    125     85     93     78
D80V6, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                             9                             125
  CLUS_3                             1                              85
  CLUS_4                             2                              93
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q23.31) MUTATED        2      9      1
  DEL PEAK 22(10Q23.31) WILD-TYPE    179    142    165
D80V7, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             2                             179
  CLUS_2                             9                             142
  CLUS_3                             1                             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q23.31) MUTATED        2      9      1
  DEL PEAK 22(10Q23.31) WILD-TYPE    176    119    191
D80V8, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             2                             176
  CLUS_2                             9                             119
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q23.31) MUTATED        3      7      2
  DEL PEAK 22(10Q23.31) WILD-TYPE    156    157    143
D80V9, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             3                             156
  CLUS_2                             7                             157
  CLUS_3                             2                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q23.31) MUTATED        3      8      1
  DEL PEAK 22(10Q23.31) WILD-TYPE    161    118    177
D80V10, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             3                             161
  CLUS_2                             8                             118
  CLUS_3                             1                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 23(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.1) MUTATED        6      0      1
  DEL PEAK 23(11P15.1) WILD-TYPE     50    360     82
D81V1, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                            0                            360
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.1) MUTATED        1      6      0
  DEL PEAK 23(11P15.1) WILD-TYPE    275    148     69
D81V2, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            6                            148
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11P15.1) MUTATED        1      0      1      1
  DEL PEAK 23(11P15.1) WILD-TYPE     63     64     41     48
D81V3, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            0                             64
  CLUS_3                            1                             41
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11P15.1) MUTATED        1      0      0      1      1      0
  DEL PEAK 23(11P15.1) WILD-TYPE     45     28     33     28     46     27
                                vv
clus                             CLUS_7
  DEL PEAK 23(11P15.1) MUTATED        0
  DEL PEAK 23(11P15.1) WILD-TYPE      9
D81V4, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            1                             46
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11P15.1) MUTATED        0      6      1      0
  DEL PEAK 23(11P15.1) WILD-TYPE    168    149     57    116
D81V5, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            6                            149
  CLUS_3                            1                             57
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11P15.1) MUTATED        1      6      0      0      0
  DEL PEAK 23(11P15.1) WILD-TYPE    103    128     86     95     78
D81V6, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            6                            128
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.1) MUTATED        1      6      0
  DEL PEAK 23(11P15.1) WILD-TYPE    180    145    166
D81V7, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                            6                            145
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.1) MUTATED        1      6      0
  DEL PEAK 23(11P15.1) WILD-TYPE    177    122    192
D81V8, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            6                            122
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.1) MUTATED        2      2      3
  DEL PEAK 23(11P15.1) WILD-TYPE    157    162    142
D81V9, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            2                            157
  CLUS_2                            2                            162
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.1) MUTATED        2      5      0
  DEL PEAK 23(11P15.1) WILD-TYPE    162    121    178
D81V10, multiclass
        clus
vv       DEL PEAK 23(11P15.1) MUTATED DEL PEAK 23(11P15.1) WILD-TYPE
  CLUS_1                            2                            162
  CLUS_2                            5                            121
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 24(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q12.13) MUTATED        8      7      3
  DEL PEAK 24(13Q12.13) WILD-TYPE     48    353     80
D82V1, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             8                              48
  CLUS_2                             7                             353
  CLUS_3                             3                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q12.13) MUTATED        3     12      3
  DEL PEAK 24(13Q12.13) WILD-TYPE    273    142     66
D82V2, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             3                             273
  CLUS_2                            12                             142
  CLUS_3                             3                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q12.13) MUTATED        1      1      4      1
  DEL PEAK 24(13Q12.13) WILD-TYPE     63     63     38     48
D82V3, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             1                              63
  CLUS_2                             1                              63
  CLUS_3                             4                              38
  CLUS_4                             1                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(13Q12.13) MUTATED        1      0      0      4      1      1
  DEL PEAK 24(13Q12.13) WILD-TYPE     45     28     33     25     46     26
                                 vv
clus                              CLUS_7
  DEL PEAK 24(13Q12.13) MUTATED        0
  DEL PEAK 24(13Q12.13) WILD-TYPE      9
D82V4, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             1                              45
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             4                              25
  CLUS_5                             1                              46
  CLUS_6                             1                              26
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q12.13) MUTATED        2     11      3      2
  DEL PEAK 24(13Q12.13) WILD-TYPE    166    144     55    114
D82V5, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             2                             166
  CLUS_2                            11                             144
  CLUS_3                             3                              55
  CLUS_4                             2                             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q12.13) MUTATED        2     10      4      2      0
  DEL PEAK 24(13Q12.13) WILD-TYPE    102    124     82     93     78
D82V6, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             2                             102
  CLUS_2                            10                             124
  CLUS_3                             4                              82
  CLUS_4                             2                              93
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q12.13) MUTATED        4     10      4
  DEL PEAK 24(13Q12.13) WILD-TYPE    177    141    162
D82V7, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             4                             177
  CLUS_2                            10                             141
  CLUS_3                             4                             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q12.13) MUTATED        4     10      4
  DEL PEAK 24(13Q12.13) WILD-TYPE    174    118    188
D82V8, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             4                             174
  CLUS_2                            10                             118
  CLUS_3                             4                             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q12.13) MUTATED        4      6      8
  DEL PEAK 24(13Q12.13) WILD-TYPE    155    158    137
D82V9, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             4                             155
  CLUS_2                             6                             158
  CLUS_3                             8                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q12.13) MUTATED        4     10      4
  DEL PEAK 24(13Q12.13) WILD-TYPE    160    116    174
D82V10, multiclass
        clus
vv       DEL PEAK 24(13Q12.13) MUTATED DEL PEAK 24(13Q12.13) WILD-TYPE
  CLUS_1                             4                             160
  CLUS_2                            10                             116
  CLUS_3                             4                             174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 25(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED        7      8      4
  DEL PEAK 25(13Q22.1) WILD-TYPE     49    352     79
D83V1, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            7                             49
  CLUS_2                            8                            352
  CLUS_3                            4                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED        6     11      2
  DEL PEAK 25(13Q22.1) WILD-TYPE    270    143     67
D83V2, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            6                            270
  CLUS_2                           11                            143
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED        1      2      6      2
  DEL PEAK 25(13Q22.1) WILD-TYPE     63     62     36     47
D83V3, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            6                             36
  CLUS_4                            2                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(13Q22.1) MUTATED        2      0      0      4      4      1
  DEL PEAK 25(13Q22.1) WILD-TYPE     44     28     33     25     43     26
                                vv
clus                             CLUS_7
  DEL PEAK 25(13Q22.1) MUTATED        0
  DEL PEAK 25(13Q22.1) WILD-TYPE      9
D83V4, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            4                             25
  CLUS_5                            4                             43
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED        0     11      2      6
  DEL PEAK 25(13Q22.1) WILD-TYPE    168    144     56    110
D83V5, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                           11                            144
  CLUS_3                            2                             56
  CLUS_4                            6                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(13Q22.1) MUTATED        0     11      2      6      0
  DEL PEAK 25(13Q22.1) WILD-TYPE    104    123     84     89     78
D83V6, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                           11                            123
  CLUS_3                            2                             84
  CLUS_4                            6                             89
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED        1     11      7
  DEL PEAK 25(13Q22.1) WILD-TYPE    180    140    159
D83V7, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            1                            180
  CLUS_2                           11                            140
  CLUS_3                            7                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED        1     11      7
  DEL PEAK 25(13Q22.1) WILD-TYPE    177    117    185
D83V8, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                           11                            117
  CLUS_3                            7                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED        1      8      9
  DEL PEAK 25(13Q22.1) WILD-TYPE    158    156    136
D83V9, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            1                            158
  CLUS_2                            8                            156
  CLUS_3                            9                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED        1     10      7
  DEL PEAK 25(13Q22.1) WILD-TYPE    163    116    171
D83V10, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                            1                            163
  CLUS_2                           10                            116
  CLUS_3                            7                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 27(15Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q25.3) MUTATED        5      2      2
  DEL PEAK 27(15Q25.3) WILD-TYPE     51    358     81
D84V1, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            2                            358
  CLUS_3                            2                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q25.3) MUTATED        1      8      0
  DEL PEAK 27(15Q25.3) WILD-TYPE    275    146     69
D84V2, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            8                            146
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q25.3) MUTATED        1      2      3      0
  DEL PEAK 27(15Q25.3) WILD-TYPE     63     62     39     49
D84V3, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            3                             39
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(15Q25.3) MUTATED        1      0      0      3      0      2
  DEL PEAK 27(15Q25.3) WILD-TYPE     45     28     33     26     47     25
                                vv
clus                             CLUS_7
  DEL PEAK 27(15Q25.3) MUTATED        0
  DEL PEAK 27(15Q25.3) WILD-TYPE      9
D84V4, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            3                             26
  CLUS_5                            0                             47
  CLUS_6                            2                             25
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q25.3) MUTATED        1      8      0      0
  DEL PEAK 27(15Q25.3) WILD-TYPE    167    147     58    116
D84V5, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                            167
  CLUS_2                            8                            147
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(15Q25.3) MUTATED        1      8      0      0      0
  DEL PEAK 27(15Q25.3) WILD-TYPE    103    126     86     95     78
D84V6, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            8                            126
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q25.3) MUTATED        0      8      1
  DEL PEAK 27(15Q25.3) WILD-TYPE    181    143    165
D84V7, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            0                            181
  CLUS_2                            8                            143
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q25.3) MUTATED        0      8      1
  DEL PEAK 27(15Q25.3) WILD-TYPE    178    120    191
D84V8, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            8                            120
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q25.3) MUTATED        1      4      3
  DEL PEAK 27(15Q25.3) WILD-TYPE    158    160    142
D84V9, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                            158
  CLUS_2                            4                            160
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q25.3) MUTATED        1      6      1
  DEL PEAK 27(15Q25.3) WILD-TYPE    163    120    177
D84V10, multiclass
        clus
vv       DEL PEAK 27(15Q25.3) MUTATED DEL PEAK 27(15Q25.3) WILD-TYPE
  CLUS_1                            1                            163
  CLUS_2                            6                            120
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 29(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.3) MUTATED        3      2      1
  DEL PEAK 29(16Q23.3) WILD-TYPE     53    358     82
D85V1, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                            2                            358
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.3) MUTATED        6      0      0
  DEL PEAK 29(16Q23.3) WILD-TYPE    270    154     69
D85V2, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            6                            270
  CLUS_2                            0                            154
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.3) MUTATED        0      2      0      3
  DEL PEAK 29(16Q23.3) WILD-TYPE     64     62     42     46
D85V3, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            0                             64
  CLUS_2                            2                             62
  CLUS_3                            0                             42
  CLUS_4                            3                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.3) MUTATED        0      0      1      0      3      1
  DEL PEAK 29(16Q23.3) WILD-TYPE     46     28     32     29     44     26
                                vv
clus                             CLUS_7
  DEL PEAK 29(16Q23.3) MUTATED        0
  DEL PEAK 29(16Q23.3) WILD-TYPE      9
D85V4, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            0                             28
  CLUS_3                            1                             32
  CLUS_4                            0                             29
  CLUS_5                            3                             44
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.3) MUTATED        2      0      2      2
  DEL PEAK 29(16Q23.3) WILD-TYPE    166    155     56    114
D85V5, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            2                            166
  CLUS_2                            0                            155
  CLUS_3                            2                             56
  CLUS_4                            2                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16Q23.3) MUTATED        3      0      0      2      1
  DEL PEAK 29(16Q23.3) WILD-TYPE    101    134     86     93     77
D85V6, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            3                            101
  CLUS_2                            0                            134
  CLUS_3                            0                             86
  CLUS_4                            2                             93
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.3) MUTATED        4      0      2
  DEL PEAK 29(16Q23.3) WILD-TYPE    177    151    164
D85V7, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            4                            177
  CLUS_2                            0                            151
  CLUS_3                            2                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.3) MUTATED        4      0      2
  DEL PEAK 29(16Q23.3) WILD-TYPE    174    128    190
D85V8, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            4                            174
  CLUS_2                            0                            128
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.3) MUTATED        3      0      0
  DEL PEAK 29(16Q23.3) WILD-TYPE    156    164    145
D85V9, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            0                            164
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.3) MUTATED        3      0      0
  DEL PEAK 29(16Q23.3) WILD-TYPE    161    126    178
D85V10, multiclass
        clus
vv       DEL PEAK 29(16Q23.3) MUTATED DEL PEAK 29(16Q23.3) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            0                            126
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 30(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED        4      3      1
  DEL PEAK 30(17P13.1) WILD-TYPE     52    357     82
D86V1, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            4                             52
  CLUS_2                            3                            357
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED        4      4      0
  DEL PEAK 30(17P13.1) WILD-TYPE    272    150     69
D86V2, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            4                            272
  CLUS_2                            4                            150
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P13.1) MUTATED        2      1      0      0
  DEL PEAK 30(17P13.1) WILD-TYPE     62     63     42     49
D86V3, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            1                             63
  CLUS_3                            0                             42
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED        2      0      0      0      0      1
  DEL PEAK 30(17P13.1) WILD-TYPE     44     28     33     29     47     26
                                vv
clus                             CLUS_7
  DEL PEAK 30(17P13.1) MUTATED        0
  DEL PEAK 30(17P13.1) WILD-TYPE      9
D86V4, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P13.1) MUTATED        3      4      0      1
  DEL PEAK 30(17P13.1) WILD-TYPE    165    151     58    115
D86V5, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            3                            165
  CLUS_2                            4                            151
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(17P13.1) MUTATED        2      4      0      1      1
  DEL PEAK 30(17P13.1) WILD-TYPE    102    130     86     94     77
D86V6, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                            4                            130
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED        4      4      0
  DEL PEAK 30(17P13.1) WILD-TYPE    177    147    166
D86V7, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            4                            177
  CLUS_2                            4                            147
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED        3      4      1
  DEL PEAK 30(17P13.1) WILD-TYPE    175    124    191
D86V8, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            4                            124
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED        3      5      0
  DEL PEAK 30(17P13.1) WILD-TYPE    156    159    145
D86V9, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            3                            156
  CLUS_2                            5                            159
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED        3      4      1
  DEL PEAK 30(17P13.1) WILD-TYPE    161    122    177
D86V10, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            3                            161
  CLUS_2                            4                            122
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 31(18Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q12.3) MUTATED        3      0      1
  DEL PEAK 31(18Q12.3) WILD-TYPE     53    360     82
D87V1, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                            0                            360
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q12.3) MUTATED        1      3      0
  DEL PEAK 31(18Q12.3) WILD-TYPE    275    151     69
D87V2, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            1                            275
  CLUS_2                            3                            151
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q12.3) MUTATED        2      1      0      0
  DEL PEAK 31(18Q12.3) WILD-TYPE     62     63     42     49
D87V3, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            1                             63
  CLUS_3                            0                             42
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(18Q12.3) MUTATED        2      0      0      0      0      1
  DEL PEAK 31(18Q12.3) WILD-TYPE     44     28     33     29     47     26
                                vv
clus                             CLUS_7
  DEL PEAK 31(18Q12.3) MUTATED        0
  DEL PEAK 31(18Q12.3) WILD-TYPE      9
D87V4, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q12.3) MUTATED        0      3      0      1
  DEL PEAK 31(18Q12.3) WILD-TYPE    168    152     58    115
D87V5, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            3                            152
  CLUS_3                            0                             58
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q12.3) MUTATED        0      3      0      1      0
  DEL PEAK 31(18Q12.3) WILD-TYPE    104    131     86     94     78
D87V6, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            3                            131
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q12.3) MUTATED        0      3      1
  DEL PEAK 31(18Q12.3) WILD-TYPE    181    148    165
D87V7, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            0                            181
  CLUS_2                            3                            148
  CLUS_3                            1                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q12.3) MUTATED        0      3      1
  DEL PEAK 31(18Q12.3) WILD-TYPE    178    125    191
D87V8, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            3                            125
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q12.3) MUTATED        0      2      1
  DEL PEAK 31(18Q12.3) WILD-TYPE    159    162    144
D87V9, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            0                            159
  CLUS_2                            2                            162
  CLUS_3                            1                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q12.3) MUTATED        0      2      1
  DEL PEAK 31(18Q12.3) WILD-TYPE    164    124    177
D87V10, multiclass
        clus
vv       DEL PEAK 31(18Q12.3) MUTATED DEL PEAK 31(18Q12.3) WILD-TYPE
  CLUS_1                            0                            164
  CLUS_2                            2                            124
  CLUS_3                            1                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 32(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.2) MUTATED        5      1      1
  DEL PEAK 32(19P13.2) WILD-TYPE     51    359     82
D88V1, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            5                             51
  CLUS_2                            1                            359
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.2) MUTATED        0      7      0
  DEL PEAK 32(19P13.2) WILD-TYPE    276    147     69
D88V2, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            276
  CLUS_2                            7                            147
  CLUS_3                            0                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.2) MUTATED        2      1      2      0
  DEL PEAK 32(19P13.2) WILD-TYPE     62     63     40     49
D88V3, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            1                             63
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(19P13.2) MUTATED        3      0      0      1      0      1
  DEL PEAK 32(19P13.2) WILD-TYPE     43     28     33     28     47     26
                                vv
clus                             CLUS_7
  DEL PEAK 32(19P13.2) MUTATED        0
  DEL PEAK 32(19P13.2) WILD-TYPE      9
D88V4, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.2) MUTATED        0      7      0      0
  DEL PEAK 32(19P13.2) WILD-TYPE    168    148     58    116
D88V5, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            168
  CLUS_2                            7                            148
  CLUS_3                            0                             58
  CLUS_4                            0                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.2) MUTATED        0      7      0      0      0
  DEL PEAK 32(19P13.2) WILD-TYPE    104    127     86     95     78
D88V6, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            7                            127
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.2) MUTATED        0      7      0
  DEL PEAK 32(19P13.2) WILD-TYPE    181    144    166
D88V7, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            181
  CLUS_2                            7                            144
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.2) MUTATED        0      7      0
  DEL PEAK 32(19P13.2) WILD-TYPE    178    121    192
D88V8, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            7                            121
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.2) MUTATED        0      5      2
  DEL PEAK 32(19P13.2) WILD-TYPE    159    159    143
D88V9, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            159
  CLUS_2                            5                            159
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.2) MUTATED        0      7      0
  DEL PEAK 32(19P13.2) WILD-TYPE    164    119    178
D88V10, multiclass
        clus
vv       DEL PEAK 32(19P13.2) MUTATED DEL PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            0                            164
  CLUS_2                            7                            119
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 33(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.12) MUTATED        4      3      1
  DEL PEAK 33(19P13.12) WILD-TYPE     52    357     82
D89V1, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             4                              52
  CLUS_2                             3                             357
  CLUS_3                             1                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.12) MUTATED        1      7      0
  DEL PEAK 33(19P13.12) WILD-TYPE    275    147     69
D89V2, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             1                             275
  CLUS_2                             7                             147
  CLUS_3                             0                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.12) MUTATED        3      0      2      0
  DEL PEAK 33(19P13.12) WILD-TYPE     61     64     40     49
D89V3, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             3                              61
  CLUS_2                             0                              64
  CLUS_3                             2                              40
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(19P13.12) MUTATED        4      0      0      1      0      0
  DEL PEAK 33(19P13.12) WILD-TYPE     42     28     33     28     47     27
                                 vv
clus                              CLUS_7
  DEL PEAK 33(19P13.12) MUTATED        0
  DEL PEAK 33(19P13.12) WILD-TYPE      9
D89V4, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             4                              42
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             1                              28
  CLUS_5                             0                              47
  CLUS_6                             0                              27
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.12) MUTATED        1      7      0      0
  DEL PEAK 33(19P13.12) WILD-TYPE    167    148     58    116
D89V5, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             1                             167
  CLUS_2                             7                             148
  CLUS_3                             0                              58
  CLUS_4                             0                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.12) MUTATED        1      7      0      0      0
  DEL PEAK 33(19P13.12) WILD-TYPE    103    127     86     95     78
D89V6, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             1                             103
  CLUS_2                             7                             127
  CLUS_3                             0                              86
  CLUS_4                             0                              95
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.12) MUTATED        0      7      1
  DEL PEAK 33(19P13.12) WILD-TYPE    181    144    165
D89V7, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             0                             181
  CLUS_2                             7                             144
  CLUS_3                             1                             165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.12) MUTATED        0      7      1
  DEL PEAK 33(19P13.12) WILD-TYPE    178    121    191
D89V8, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             0                             178
  CLUS_2                             7                             121
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.12) MUTATED        0      4      4
  DEL PEAK 33(19P13.12) WILD-TYPE    159    160    141
D89V9, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             0                             159
  CLUS_2                             4                             160
  CLUS_3                             4                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.12) MUTATED        0      7      1
  DEL PEAK 33(19P13.12) WILD-TYPE    164    119    177
D89V10, multiclass
        clus
vv       DEL PEAK 33(19P13.12) MUTATED DEL PEAK 33(19P13.12) WILD-TYPE
  CLUS_1                             0                             164
  CLUS_2                             7                             119
  CLUS_3                             1                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DEL PEAK 36(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q21.1) MUTATED        6      2      1
  DEL PEAK 36(21Q21.1) WILD-TYPE     50    358     82
D90V1, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                            2                            358
  CLUS_3                            1                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q21.1) MUTATED        3      4      2
  DEL PEAK 36(21Q21.1) WILD-TYPE    273    150     67
D90V2, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            3                            273
  CLUS_2                            4                            150
  CLUS_3                            2                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q21.1) MUTATED        1      3      0      0
  DEL PEAK 36(21Q21.1) WILD-TYPE     63     61     42     49
D90V3, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            3                             61
  CLUS_3                            0                             42
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q21.1) MUTATED        1      0      1      0      0      2
  DEL PEAK 36(21Q21.1) WILD-TYPE     45     28     32     29     47     25
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q21.1) MUTATED        0
  DEL PEAK 36(21Q21.1) WILD-TYPE      9
D90V4, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            1                             32
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            2                             25
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q21.1) MUTATED        3      4      1      1
  DEL PEAK 36(21Q21.1) WILD-TYPE    165    151     57    115
D90V5, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            3                            165
  CLUS_2                            4                            151
  CLUS_3                            1                             57
  CLUS_4                            1                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(21Q21.1) MUTATED        1      4      2      1      1
  DEL PEAK 36(21Q21.1) WILD-TYPE    103    130     84     94     77
D90V6, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            4                            130
  CLUS_3                            2                             84
  CLUS_4                            1                             94
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q21.1) MUTATED        5      4      0
  DEL PEAK 36(21Q21.1) WILD-TYPE    176    147    166
D90V7, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            5                            176
  CLUS_2                            4                            147
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q21.1) MUTATED        5      4      0
  DEL PEAK 36(21Q21.1) WILD-TYPE    173    124    192
D90V8, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            5                            173
  CLUS_2                            4                            124
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q21.1) MUTATED        5      2      1
  DEL PEAK 36(21Q21.1) WILD-TYPE    154    162    144
D90V9, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            5                            154
  CLUS_2                            2                            162
  CLUS_3                            1                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q21.1) MUTATED        6      2      0
  DEL PEAK 36(21Q21.1) WILD-TYPE    158    124    178
D90V10, multiclass
        clus
vv       DEL PEAK 36(21Q21.1) MUTATED DEL PEAK 36(21Q21.1) WILD-TYPE
  CLUS_1                            6                            158
  CLUS_2                            2                            124
  CLUS_3                            0                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DEL PEAK 37(22Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q12.3) MUTATED       13      0     77
  DEL PEAK 37(22Q12.3) WILD-TYPE     43    360      6
D91V1, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                            0                            360
  CLUS_3                           77                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q12.3) MUTATED       37     47      6
  DEL PEAK 37(22Q12.3) WILD-TYPE    239    107     63
D91V2, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           37                            239
  CLUS_2                           47                            107
  CLUS_3                            6                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(22Q12.3) MUTATED       15      9      5      9
  DEL PEAK 37(22Q12.3) WILD-TYPE     49     55     37     40
D91V3, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                            9                             55
  CLUS_3                            5                             37
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(22Q12.3) MUTATED       11      5      2      5      8      6
  DEL PEAK 37(22Q12.3) WILD-TYPE     35     23     31     24     39     21
                                vv
clus                             CLUS_7
  DEL PEAK 37(22Q12.3) MUTATED        1
  DEL PEAK 37(22Q12.3) WILD-TYPE      8
D91V4, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           11                             35
  CLUS_2                            5                             23
  CLUS_3                            2                             31
  CLUS_4                            5                             24
  CLUS_5                            8                             39
  CLUS_6                            6                             21
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(22Q12.3) MUTATED        8     47      8     27
  DEL PEAK 37(22Q12.3) WILD-TYPE    160    108     50     89
D91V5, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                            8                            160
  CLUS_2                           47                            108
  CLUS_3                            8                             50
  CLUS_4                           27                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(22Q12.3) MUTATED        9     42     13     24      2
  DEL PEAK 37(22Q12.3) WILD-TYPE     95     92     73     71     76
D91V6, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                            9                             95
  CLUS_2                           42                             92
  CLUS_3                           13                             73
  CLUS_4                           24                             71
  CLUS_5                            2                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q12.3) MUTATED       24     43     23
  DEL PEAK 37(22Q12.3) WILD-TYPE    157    108    143
D91V7, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           24                            157
  CLUS_2                           43                            108
  CLUS_3                           23                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q12.3) MUTATED       22     40     28
  DEL PEAK 37(22Q12.3) WILD-TYPE    156     88    164
D91V8, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           22                            156
  CLUS_2                           40                             88
  CLUS_3                           28                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q12.3) MUTATED       17     24     41
  DEL PEAK 37(22Q12.3) WILD-TYPE    142    140    104
D91V9, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           17                            142
  CLUS_2                           24                            140
  CLUS_3                           41                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q12.3) MUTATED       22     37     23
  DEL PEAK 37(22Q12.3) WILD-TYPE    142     89    155
D91V10, multiclass
        clus
vv       DEL PEAK 37(22Q12.3) MUTATED DEL PEAK 37(22Q12.3) WILD-TYPE
  CLUS_1                           22                            142
  CLUS_2                           37                             89
  CLUS_3                           23                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DEL PEAK 38(22Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.1) MUTATED       13      0     76
  DEL PEAK 38(22Q13.1) WILD-TYPE     43    360      7
D92V1, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                            0                            360
  CLUS_3                           76                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.1) MUTATED       36     47      6
  DEL PEAK 38(22Q13.1) WILD-TYPE    240    107     63
D92V2, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           36                            240
  CLUS_2                           47                            107
  CLUS_3                            6                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(22Q13.1) MUTATED       15      9      5      9
  DEL PEAK 38(22Q13.1) WILD-TYPE     49     55     37     40
D92V3, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                            9                             55
  CLUS_3                            5                             37
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.1) MUTATED       11      5      2      5      8      6
  DEL PEAK 38(22Q13.1) WILD-TYPE     35     23     31     24     39     21
                                vv
clus                             CLUS_7
  DEL PEAK 38(22Q13.1) MUTATED        1
  DEL PEAK 38(22Q13.1) WILD-TYPE      8
D92V4, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           11                             35
  CLUS_2                            5                             23
  CLUS_3                            2                             31
  CLUS_4                            5                             24
  CLUS_5                            8                             39
  CLUS_6                            6                             21
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(22Q13.1) MUTATED        8     47      8     26
  DEL PEAK 38(22Q13.1) WILD-TYPE    160    108     50     90
D92V5, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                            8                            160
  CLUS_2                           47                            108
  CLUS_3                            8                             50
  CLUS_4                           26                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(22Q13.1) MUTATED        9     42     13     23      2
  DEL PEAK 38(22Q13.1) WILD-TYPE     95     92     73     72     76
D92V6, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                            9                             95
  CLUS_2                           42                             92
  CLUS_3                           13                             73
  CLUS_4                           23                             72
  CLUS_5                            2                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.1) MUTATED       23     43     23
  DEL PEAK 38(22Q13.1) WILD-TYPE    158    108    143
D92V7, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           23                            158
  CLUS_2                           43                            108
  CLUS_3                           23                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.1) MUTATED       21     40     28
  DEL PEAK 38(22Q13.1) WILD-TYPE    157     88    164
D92V8, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           21                            157
  CLUS_2                           40                             88
  CLUS_3                           28                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.1) MUTATED       17     23     41
  DEL PEAK 38(22Q13.1) WILD-TYPE    142    141    104
D92V9, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           17                            142
  CLUS_2                           23                            141
  CLUS_3                           41                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.1) MUTATED       22     37     22
  DEL PEAK 38(22Q13.1) WILD-TYPE    142     89    156
D92V10, multiclass
        clus
vv       DEL PEAK 38(22Q13.1) MUTATED DEL PEAK 38(22Q13.1) WILD-TYPE
  CLUS_1                           22                            142
  CLUS_2                           37                             89
  CLUS_3                           22                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = DEL PEAK 39(22Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.2) MUTATED       13      0     76
  DEL PEAK 39(22Q13.2) WILD-TYPE     43    360      7
D93V1, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                            0                            360
  CLUS_3                           76                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.2) MUTATED       36     47      6
  DEL PEAK 39(22Q13.2) WILD-TYPE    240    107     63
D93V2, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           36                            240
  CLUS_2                           47                            107
  CLUS_3                            6                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.2) MUTATED       15      9      5      9
  DEL PEAK 39(22Q13.2) WILD-TYPE     49     55     37     40
D93V3, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                            9                             55
  CLUS_3                            5                             37
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(22Q13.2) MUTATED       11      5      2      5      8      6
  DEL PEAK 39(22Q13.2) WILD-TYPE     35     23     31     24     39     21
                                vv
clus                             CLUS_7
  DEL PEAK 39(22Q13.2) MUTATED        1
  DEL PEAK 39(22Q13.2) WILD-TYPE      8
D93V4, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           11                             35
  CLUS_2                            5                             23
  CLUS_3                            2                             31
  CLUS_4                            5                             24
  CLUS_5                            8                             39
  CLUS_6                            6                             21
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(22Q13.2) MUTATED        8     47      8     26
  DEL PEAK 39(22Q13.2) WILD-TYPE    160    108     50     90
D93V5, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                            8                            160
  CLUS_2                           47                            108
  CLUS_3                            8                             50
  CLUS_4                           26                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(22Q13.2) MUTATED        9     42     13     23      2
  DEL PEAK 39(22Q13.2) WILD-TYPE     95     92     73     72     76
D93V6, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                            9                             95
  CLUS_2                           42                             92
  CLUS_3                           13                             73
  CLUS_4                           23                             72
  CLUS_5                            2                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.2) MUTATED       23     43     23
  DEL PEAK 39(22Q13.2) WILD-TYPE    158    108    143
D93V7, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           23                            158
  CLUS_2                           43                            108
  CLUS_3                           23                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.2) MUTATED       21     40     28
  DEL PEAK 39(22Q13.2) WILD-TYPE    157     88    164
D93V8, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           21                            157
  CLUS_2                           40                             88
  CLUS_3                           28                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.2) MUTATED       17     23     41
  DEL PEAK 39(22Q13.2) WILD-TYPE    142    141    104
D93V9, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           17                            142
  CLUS_2                           23                            141
  CLUS_3                           41                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(22Q13.2) MUTATED       22     37     22
  DEL PEAK 39(22Q13.2) WILD-TYPE    142     89    156
D93V10, multiclass
        clus
vv       DEL PEAK 39(22Q13.2) MUTATED DEL PEAK 39(22Q13.2) WILD-TYPE
  CLUS_1                           22                            142
  CLUS_2                           37                             89
  CLUS_3                           22                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DEL PEAK 40(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       13      1     76
  DEL PEAK 40(22Q13.32) WILD-TYPE     43    359      7
D94V1, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            13                              43
  CLUS_2                             1                             359
  CLUS_3                            76                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       36     48      6
  DEL PEAK 40(22Q13.32) WILD-TYPE    240    106     63
D94V2, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            36                             240
  CLUS_2                            48                             106
  CLUS_3                             6                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(22Q13.32) MUTATED       15      9      5      9
  DEL PEAK 40(22Q13.32) WILD-TYPE     49     55     37     40
D94V3, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                             9                              55
  CLUS_3                             5                              37
  CLUS_4                             9                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q13.32) MUTATED       11      5      2      5      8      6
  DEL PEAK 40(22Q13.32) WILD-TYPE     35     23     31     24     39     21
                                 vv
clus                              CLUS_7
  DEL PEAK 40(22Q13.32) MUTATED        1
  DEL PEAK 40(22Q13.32) WILD-TYPE      8
D94V4, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            11                              35
  CLUS_2                             5                              23
  CLUS_3                             2                              31
  CLUS_4                             5                              24
  CLUS_5                             8                              39
  CLUS_6                             6                              21
  CLUS_7                             1                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(22Q13.32) MUTATED        8     48      8     26
  DEL PEAK 40(22Q13.32) WILD-TYPE    160    107     50     90
D94V5, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                             8                             160
  CLUS_2                            48                             107
  CLUS_3                             8                              50
  CLUS_4                            26                              90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q13.32) MUTATED        9     43     13     23      2
  DEL PEAK 40(22Q13.32) WILD-TYPE     95     91     73     72     76
D94V6, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                             9                              95
  CLUS_2                            43                              91
  CLUS_3                            13                              73
  CLUS_4                            23                              72
  CLUS_5                             2                              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       23     44     23
  DEL PEAK 40(22Q13.32) WILD-TYPE    158    107    143
D94V7, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            23                             158
  CLUS_2                            44                             107
  CLUS_3                            23                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       21     41     28
  DEL PEAK 40(22Q13.32) WILD-TYPE    157     87    164
D94V8, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            21                             157
  CLUS_2                            41                              87
  CLUS_3                            28                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       17     24     41
  DEL PEAK 40(22Q13.32) WILD-TYPE    142    140    104
D94V9, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            17                             142
  CLUS_2                            24                             140
  CLUS_3                            41                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q13.32) MUTATED       22     38     22
  DEL PEAK 40(22Q13.32) WILD-TYPE    142     88    156
D94V10, multiclass
        clus
vv       DEL PEAK 40(22Q13.32) MUTATED DEL PEAK 40(22Q13.32) WILD-TYPE
  CLUS_1                            22                             142
  CLUS_2                            38                              88
  CLUS_3                            22                             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = DEL PEAK 41(XQ23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ23) MUTATED        3      1      0
  DEL PEAK 41(XQ23) WILD-TYPE     53    359     83
D95V1, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         3                          53
  CLUS_2                         1                         359
  CLUS_3                         0                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ23) MUTATED        0      3      1
  DEL PEAK 41(XQ23) WILD-TYPE    276    151     68
D95V2, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         276
  CLUS_2                         3                         151
  CLUS_3                         1                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(XQ23) MUTATED        3      0      0      0
  DEL PEAK 41(XQ23) WILD-TYPE     61     64     42     49
D95V3, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         3                          61
  CLUS_2                         0                          64
  CLUS_3                         0                          42
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 41(XQ23) MUTATED        3      0      0      0      0      0      0
  DEL PEAK 41(XQ23) WILD-TYPE     43     28     33     29     47     27      9
D95V4, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         3                          43
  CLUS_2                         0                          28
  CLUS_3                         0                          33
  CLUS_4                         0                          29
  CLUS_5                         0                          47
  CLUS_6                         0                          27
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(XQ23) MUTATED        0      3      1      0
  DEL PEAK 41(XQ23) WILD-TYPE    168    152     57    116
D95V5, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         168
  CLUS_2                         3                         152
  CLUS_3                         1                          57
  CLUS_4                         0                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(XQ23) MUTATED        0      3      1      0      0
  DEL PEAK 41(XQ23) WILD-TYPE    104    131     85     95     78
D95V6, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         3                         131
  CLUS_3                         1                          85
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ23) MUTATED        0      3      1
  DEL PEAK 41(XQ23) WILD-TYPE    181    148    165
D95V7, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         181
  CLUS_2                         3                         148
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ23) MUTATED        0      3      1
  DEL PEAK 41(XQ23) WILD-TYPE    178    125    191
D95V8, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         178
  CLUS_2                         3                         125
  CLUS_3                         1                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ23) MUTATED        0      3      1
  DEL PEAK 41(XQ23) WILD-TYPE    159    161    144
D95V9, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         159
  CLUS_2                         3                         161
  CLUS_3                         1                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ23) MUTATED        0      3      1
  DEL PEAK 41(XQ23) WILD-TYPE    164    123    177
D95V10, multiclass
        clus
vv       DEL PEAK 41(XQ23) MUTATED DEL PEAK 41(XQ23) WILD-TYPE
  CLUS_1                         0                         164
  CLUS_2                         3                         123
  CLUS_3                         1                         177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = DEL PEAK 42(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XQ22.3) MUTATED        3      1      0
  DEL PEAK 42(XQ22.3) WILD-TYPE     53    359     83
D96V1, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           1                           359
  CLUS_3                           0                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1
  DEL PEAK 42(XQ22.3) WILD-TYPE    276    151     68
D96V2, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           276
  CLUS_2                           3                           151
  CLUS_3                           1                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(XQ22.3) MUTATED        3      0      0      0
  DEL PEAK 42(XQ22.3) WILD-TYPE     61     64     42     49
D96V3, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           0                            64
  CLUS_3                           0                            42
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(XQ22.3) MUTATED        3      0      0      0      0      0
  DEL PEAK 42(XQ22.3) WILD-TYPE     43     28     33     29     47     27
                               vv
clus                            CLUS_7
  DEL PEAK 42(XQ22.3) MUTATED        0
  DEL PEAK 42(XQ22.3) WILD-TYPE      9
D96V4, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           0                            29
  CLUS_5                           0                            47
  CLUS_6                           0                            27
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1      0
  DEL PEAK 42(XQ22.3) WILD-TYPE    168    152     57    116
D96V5, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           168
  CLUS_2                           3                           152
  CLUS_3                           1                            57
  CLUS_4                           0                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1      0      0
  DEL PEAK 42(XQ22.3) WILD-TYPE    104    131     85     95     78
D96V6, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           3                           131
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1
  DEL PEAK 42(XQ22.3) WILD-TYPE    181    148    165
D96V7, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           181
  CLUS_2                           3                           148
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1
  DEL PEAK 42(XQ22.3) WILD-TYPE    178    125    191
D96V8, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                           3                           125
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1
  DEL PEAK 42(XQ22.3) WILD-TYPE    159    161    144
D96V9, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           159
  CLUS_2                           3                           161
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(XQ22.3) MUTATED        0      3      1
  DEL PEAK 42(XQ22.3) WILD-TYPE    164    123    177
D96V10, multiclass
        clus
vv       DEL PEAK 42(XQ22.3) MUTATED DEL PEAK 42(XQ22.3) WILD-TYPE
  CLUS_1                           0                           164
  CLUS_2                           3                           123
  CLUS_3                           1                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
