name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-A5-A0G3-01A-11W-A062-09	37	37	0	28	0	coding only	1	28835473	...	9	27	37	3.121156e-07	9.363467e-07	1.283142e-06	-5.891725e+00	...	1	28779281	...	3.474722e-08
TCGA-A5-A0G5-01A-11W-A062-09	126	122	4	95	3.174603e-02	coding only	1	28835473	...	27	91	126	9.363467e-07	3.155835e-06	4.369618e-06	-5.359557e+00	...	4	28779281	...	1.389889e-07
TCGA-A5-A0G9-01A-11W-A062-09	251	246	5	196	1.992032e-02	coding only	1	28835473	...	50	182	251	1.733975e-06	6.311670e-06	8.704556e-06	-5.060253e+00	...	14	28779281	...	4.864611e-07
TCGA-A5-A0GA-01A-11W-A062-09	296	290	6	212	2.027027e-02	coding only	1	28835473	...	78	198	296	2.705002e-06	6.866542e-06	1.026513e-05	-4.988635e+00	...	14	28779281	...	4.864611e-07
TCGA-A5-A0GB-01A-11W-A062-09	691	682	9	500	1.302460e-02	coding only	1	28835473	...	182	470	691	6.311670e-06	1.629937e-05	2.396354e-05	-4.620449e+00	...	30	28779281	...	1.042417e-06
TCGA-A5-A0GD-01A-11W-A062-09	1	1	0	1	0	coding only	1	28835473	...	0	0	1	0	0	3.467951e-08	-7.459927e+00	...	1	28779281	...	3.474722e-08
TCGA-A5-A0GE-01A-11W-A062-09	30	30	0	25	0	coding only	1	28835473	...	5	20	30	1.733975e-07	6.935901e-07	1.040385e-06	-5.982806e+00	...	5	28779281	...	1.737361e-07
TCGA-A5-A0GH-01A-21W-A062-09	418	414	4	293	9.569378e-03	coding only	1	28835473	...	121	270	418	4.196220e-06	9.363467e-06	1.449603e-05	-4.838751e+00	...	23	28779281	...	7.991861e-07
TCGA-A5-A0GI-01A-11W-A062-09	251	248	3	190	1.195219e-02	coding only	1	28835473	...	57	174	248	1.976732e-06	6.034234e-06	8.600518e-06	-5.065475e+00	...	15	28779281	...	5.212083e-07
TCGA-A5-A0GJ-01A-11W-A062-09	81	80	1	62	1.234568e-02	coding only	1	28835473	...	18	58	81	6.242311e-07	2.011411e-06	2.809040e-06	-5.551442e+00	...	4	28779281	...	1.389889e-07
TCGA-A5-A0GM-01A-11W-A062-09	40	39	1	32	2.500000e-02	coding only	1	28835473	...	7	30	40	2.427566e-07	1.040385e-06	1.387180e-06	-5.857867e+00	...	2	28779281	...	6.949444e-08
TCGA-A5-A0GN-01A-11W-A062-09	57	56	1	44	1.754386e-02	coding only	1	28835473	...	12	41	57	4.161541e-07	1.421860e-06	1.976732e-06	-5.704052e+00	...	3	28779281	...	1.042417e-07
TCGA-A5-A0GP-01A-11W-A062-09	1591	1565	26	1216	1.634192e-02	coding only	1	28835473	...	349	1212	1590	1.210315e-05	4.203156e-05	5.514042e-05	-4.258530e+00	...	3	28779281	...	1.042417e-07
TCGA-A5-A0GQ-01A-11D-A122-09	71	70	1	50	1.408451e-02	coding only	1	28835473	...	20	45	71	6.935901e-07	1.560578e-06	2.462245e-06	-5.608669e+00	...	5	28779281	...	1.737361e-07
TCGA-A5-A0GU-01A-11W-A062-09	47	46	1	38	2.127660e-02	coding only	1	28835473	...	8	33	47	2.774361e-07	1.144424e-06	1.629937e-06	-5.787829e+00	...	5	28779281	...	1.737361e-07
TCGA-A5-A0GV-01A-31W-A062-09	51	50	1	40	1.960784e-02	coding only	1	28835473	...	10	35	51	3.467951e-07	1.213783e-06	1.768655e-06	-5.752357e+00	...	5	28779281	...	1.737361e-07
TCGA-A5-A0GW-01A-11W-A062-09	307	301	6	197	1.954397e-02	coding only	1	28835473	...	104	185	307	3.606669e-06	6.415709e-06	1.064661e-05	-4.972789e+00	...	12	28779281	...	4.169666e-07
TCGA-A5-A0GX-01A-11W-A062-09	35	34	1	29	2.857143e-02	coding only	1	28835473	...	5	25	35	1.733975e-07	8.669877e-07	1.213783e-06	-5.915859e+00	...	4	28779281	...	1.389889e-07
TCGA-A5-A0R6-01A-11D-A10B-09	40	40	0	32	0	coding only	1	28835473	...	8	27	40	2.774361e-07	9.363467e-07	1.387180e-06	-5.857867e+00	...	5	28779281	...	1.737361e-07
TCGA-A5-A0R7-01A-31D-A10B-09	51	50	1	38	1.960784e-02	coding only	1	28835473	...	12	31	51	4.161541e-07	1.075065e-06	1.768655e-06	-5.752357e+00	...	7	28779281	...	2.432305e-07
TCGA-A5-A0R8-01A-11D-A10B-09	87	86	1	68	1.149425e-02	coding only	1	28835473	...	18	58	87	6.242311e-07	2.011411e-06	3.017117e-06	-5.520408e+00	...	10	28779281	...	3.474722e-07
TCGA-A5-A0R9-01A-11D-A10B-09	45	45	0	35	0	coding only	1	28835473	...	10	28	45	3.467951e-07	9.710262e-07	1.560578e-06	-5.806715e+00	...	7	28779281	...	2.432305e-07
TCGA-A5-A0RA-01A-21D-A10B-09	83	82	1	70	1.204819e-02	coding only	1	28835473	...	12	61	83	4.161541e-07	2.115450e-06	2.878399e-06	-5.540849e+00	...	9	28779281	...	3.127250e-07
TCGA-A5-A0VO-01A-21D-A10G-09	77	77	0	53	0	coding only	1	28835473	...	23	48	76	7.976287e-07	1.664616e-06	2.635643e-06	-5.579113e+00	...	5	28779281	...	1.737361e-07
TCGA-A5-A0VP-01A-21D-A10B-09	1588	1561	27	1122	1.700252e-02	coding only	1	28835473	...	430	1100	1564	1.491219e-05	3.814746e-05	5.423875e-05	-4.265690e+00	...	6	28779281	...	2.084833e-07
TCGA-A5-A0VQ-01A-11D-A10B-09	384	377	7	283	1.822917e-02	coding only	1	28835473	...	91	262	370	3.155835e-06	9.086031e-06	1.283142e-05	-4.891725e+00	...	11	28779281	...	3.822194e-07
TCGA-AJ-A23M-01A-11D-A159-09	111	109	2	80	1.801802e-02	coding only	1	28835473	...	28	73	109	9.710262e-07	2.531604e-06	3.780066e-06	-5.422501e+00	...	6	28779281	...	2.084833e-07
TCGA-AP-A051-01A-21W-A027-09	8881	8756	125	6609	1.407499e-02	coding only	1	28835473	...	2146	6577	8879	7.442222e-05	2.280871e-04	3.079193e-04	-3.511563e+00	...	29	28779281	...	1.007669e-06
TCGA-AP-A052-01A-11W-A027-09	30	30	0	26	0	coding only	1	28835473	...	4	24	30	1.387180e-07	8.323082e-07	1.040385e-06	-5.982806e+00	...	2	28779281	...	6.949444e-08
TCGA-AP-A053-01A-21W-A027-09	52	50	2	41	3.846154e-02	coding only	1	28835473	...	9	38	52	3.121156e-07	1.317821e-06	1.803334e-06	-5.743924e+00	...	3	28779281	...	1.042417e-07
TCGA-AP-A054-01A-11W-A062-09	1104	1090	14	818	1.268116e-02	coding only	1	28835473	...	272	785	1103	9.432826e-06	2.722341e-05	3.825150e-05	-4.417352e+00	...	32	28779281	...	1.111911e-06
TCGA-AP-A056-01A-11W-A027-09	9134	8992	142	7068	1.554631e-02	coding only	1	28835473	...	1922	7053	9129	6.665401e-05	2.445946e-04	3.165892e-04	-3.499504e+00	...	12	28779281	...	4.169666e-07
TCGA-AP-A059-01A-21D-A122-09	12210	11985	225	9057	1.842752e-02	coding only	1	28835473	...	2884	8914	12025	1.000157e-04	3.091331e-04	4.170211e-04	-3.379842e+00	...	6	28779281	...	2.084833e-07
TCGA-AP-A05A-01A-11W-A027-09	77	76	1	62	1.298701e-02	coding only	1	28835473	...	14	60	77	4.855131e-07	2.080770e-06	2.670322e-06	-5.573436e+00	...	2	28779281	...	6.949444e-08
TCGA-AP-A05D-01A-11W-A027-09	33	33	0	29	0	coding only	1	28835473	...	4	25	33	1.387180e-07	8.669877e-07	1.144424e-06	-5.941413e+00	...	4	28779281	...	1.389889e-07
TCGA-AP-A05H-01A-11W-A027-09	74	72	2	63	2.702703e-02	coding only	1	28835473	...	9	58	74	3.121156e-07	2.011411e-06	2.566284e-06	-5.590695e+00	...	5	28779281	...	1.737361e-07
TCGA-AP-A05J-01A-11W-A027-09	52	52	0	45	0	coding only	1	28835473	...	7	44	52	2.427566e-07	1.525898e-06	1.803334e-06	-5.743924e+00	...	1	28779281	...	3.474722e-08
TCGA-AP-A05N-01A-11W-A027-09	207	203	4	156	1.932367e-02	coding only	1	28835473	...	47	141	207	1.629937e-06	4.889811e-06	7.178658e-06	-5.143957e+00	...	15	28779281	...	5.212083e-07
TCGA-AP-A05P-01A-11W-A062-09	39	38	1	30	2.564103e-02	coding only	1	28835473	...	8	28	39	2.774361e-07	9.710262e-07	1.352501e-06	-5.868862e+00	...	2	28779281	...	6.949444e-08
TCGA-AP-A0L8-01A-11W-A062-09	65	65	0	52	0	coding only	1	28835473	...	13	49	65	4.508336e-07	1.699296e-06	2.254168e-06	-5.647014e+00	...	3	28779281	...	1.042417e-07
TCGA-AP-A0L9-01A-11W-A062-09	69	68	1	56	1.449275e-02	coding only	1	28835473	...	12	53	69	4.161541e-07	1.838014e-06	2.392886e-06	-5.621078e+00	...	3	28779281	...	1.042417e-07
TCGA-AP-A0LD-01A-11W-A062-09	483	474	9	350	1.863354e-02	coding only	1	28835473	...	124	339	483	4.300259e-06	1.175635e-05	1.675020e-05	-4.775980e+00	...	11	28779281	...	3.822194e-07
TCGA-AP-A0LE-01A-11D-A127-09	500	497	3	365	6.000000e-03	coding only	1	28835473	...	131	332	494	4.543015e-06	1.151360e-05	1.713168e-05	-4.766200e+00	...	28	28779281	...	9.729222e-07
TCGA-AP-A0LF-01A-11D-A122-09	220	216	4	174	1.818182e-02	coding only	1	28835473	...	39	169	213	1.352501e-06	5.860837e-06	7.386735e-06	-5.131547e+00	...	1	28779281	...	3.474722e-08
TCGA-AP-A0LG-01A-11W-A062-09	399	388	11	283	2.756892e-02	coding only	1	28835473	...	105	264	399	3.641348e-06	9.155390e-06	1.383712e-05	-4.858954e+00	...	19	28779281	...	6.601972e-07
TCGA-AP-A0LH-01A-11W-A062-09	114	112	2	105	1.754386e-02	coding only	1	28835473	...	7	25	114	2.427566e-07	8.669877e-07	3.953464e-06	-5.403022e+00	...	80	28779281	...	2.779778e-06
TCGA-AP-A0LI-01A-11W-A062-09	91	91	0	72	0	coding only	1	28835473	...	19	70	91	6.589106e-07	2.427566e-06	3.155835e-06	-5.500886e+00	...	2	28779281	...	6.949444e-08
TCGA-AP-A0LJ-01A-11W-A062-09	44	43	1	35	2.272727e-02	coding only	1	28835473	...	8	32	44	2.774361e-07	1.109744e-06	1.525898e-06	-5.816474e+00	...	3	28779281	...	1.042417e-07
TCGA-AP-A0LL-01A-12D-A127-09	51	51	0	42	0	coding only	1	28835473	...	9	38	51	3.121156e-07	1.317821e-06	1.768655e-06	-5.752357e+00	...	4	28779281	...	1.389889e-07
TCGA-AP-A0LM-01A-11D-A122-09	14115	13843	272	10289	1.927028e-02	coding only	1	28835473	...	3498	10094	13851	1.213089e-04	3.500549e-04	4.803459e-04	-3.318446e+00	...	9	28779281	...	3.127250e-07
TCGA-AP-A0LN-01A-11W-A062-09	56	56	0	45	0	coding only	1	28835473	...	11	39	56	3.814746e-07	1.352501e-06	1.942052e-06	-5.711739e+00	...	6	28779281	...	2.084833e-07
TCGA-AP-A0LO-01A-11W-A062-09	32	31	1	25	3.125000e-02	coding only	1	28835473	...	6	23	32	2.080770e-07	7.976287e-07	1.109744e-06	-5.954777e+00	...	2	28779281	...	6.949444e-08
TCGA-AP-A0LP-01A-12D-A10B-09	269	260	9	199	3.345725e-02	exome+100bp flanks	2	35817557	...	60	179	260	1.675156e-06	4.997549e-06	7.259010e-06	-5.139123e+00	...	13	32102662	...	4.049508e-07
TCGA-AP-A0LQ-01A-12D-A10B-09	55	54	1	41	1.818182e-02	coding only	1	28835473	...	13	37	55	4.508336e-07	1.283142e-06	1.907373e-06	-5.719564e+00	...	4	28779281	...	1.389889e-07
TCGA-AP-A0LT-01A-11W-A062-09	634	625	9	458	1.419558e-02	coding only	1	28835473	...	167	433	634	5.791478e-06	1.501623e-05	2.198681e-05	-4.657838e+00	...	25	28779281	...	8.686805e-07
TCGA-AP-A0LV-01A-11W-A062-09	27	27	0	18	0	coding only	1	28835473	...	9	15	27	3.121156e-07	5.201926e-07	9.363467e-07	-6.028563e+00	...	3	28779281	...	1.042417e-07
TCGA-AP-A1DQ-01A-11D-A135-09	30	30	0	25	0	coding only	1	28835473	...	5	21	30	1.733975e-07	7.282697e-07	1.040385e-06	-5.982806e+00	...	4	28779281	...	1.389889e-07
TCGA-AX-A05S-01A-11W-A027-09	503	491	12	366	2.385686e-02	coding only	1	28835473	...	125	337	503	4.334938e-06	1.168699e-05	1.744379e-05	-4.758359e+00	...	29	28779281	...	1.007669e-06
TCGA-AX-A05T-01A-11W-A027-09	54	54	0	39	0	coding only	1	28835473	...	15	33	54	5.201926e-07	1.144424e-06	1.872693e-06	-5.727533e+00	...	6	28779281	...	2.084833e-07
TCGA-AX-A05U-01A-11W-A027-09	39	39	0	28	0	coding only	1	28835473	...	11	23	39	3.814746e-07	7.976287e-07	1.352501e-06	-5.868862e+00	...	5	28779281	...	1.737361e-07
TCGA-AX-A05W-01A-21W-A027-09	59	59	0	44	0	coding only	1	28835473	...	15	37	59	5.201926e-07	1.283142e-06	2.046091e-06	-5.689075e+00	...	7	28779281	...	2.432305e-07
TCGA-AX-A05Y-01A-11W-A027-09	171	165	6	125	3.508772e-02	exome+100bp flanks	2	35817557	...	40	118	171	1.116771e-06	3.294474e-06	4.774195e-06	-5.321100e+00	...	7	32102662	...	2.180505e-07
TCGA-AX-A05Z-01A-11W-A027-09	6890	6789	101	5583	1.465893e-02	coding only	1	28835473	...	1206	5578	6886	4.182349e-05	1.934423e-04	2.388031e-04	-3.621960e+00	...	2	28779281	...	6.949444e-08
TCGA-AX-A060-01A-11W-A027-09	674	667	7	495	1.038576e-02	coding only	1	28835473	...	172	465	674	5.964875e-06	1.612597e-05	2.337399e-05	-4.631267e+00	...	30	28779281	...	1.042417e-06
TCGA-AX-A062-01A-11W-A027-09	32	32	0	27	0	coding only	1	28835473	...	5	26	32	1.733975e-07	9.016672e-07	1.109744e-06	-5.954777e+00	...	1	28779281	...	3.474722e-08
TCGA-AX-A063-01A-11W-A027-09	956	943	13	693	1.359833e-02	coding only	1	28835473	...	250	659	955	8.669877e-06	2.285380e-05	3.311893e-05	-4.479924e+00	...	33	28779281	...	1.146658e-06
TCGA-AX-A064-01A-11W-A027-09	256	254	2	189	7.812500e-03	coding only	1	28835473	...	65	175	256	2.254168e-06	6.068914e-06	8.877954e-06	-5.051687e+00	...	14	28779281	...	4.864611e-07
TCGA-AX-A06B-01A-11W-A027-09	41	41	0	29	0	coding only	1	28835473	...	12	26	41	4.161541e-07	9.016672e-07	1.421860e-06	-5.847143e+00	...	3	28779281	...	1.042417e-07
TCGA-AX-A06H-01A-11D-A122-09	393	390	3	271	7.633588e-03	coding only	1	28835473	...	117	234	386	4.057502e-06	8.115005e-06	1.338629e-05	-4.873340e+00	...	32	28779281	...	1.111911e-06
TCGA-AX-A06L-01A-11D-A122-09	39	39	0	30	0	coding only	1	28835473	...	9	25	38	3.121156e-07	8.669877e-07	1.317821e-06	-5.880143e+00	...	4	28779281	...	1.389889e-07
TCGA-AX-A0IS-01A-12D-A10M-09	63	63	0	48	0	coding only	1	28835473	...	11	41	58	3.814746e-07	1.421860e-06	2.011411e-06	-5.696499e+00	...	6	28779281	...	2.084833e-07
TCGA-AX-A0IU-01A-11D-A10B-09	51	50	1	38	1.960784e-02	coding only	1	28835473	...	12	32	49	4.161541e-07	1.109744e-06	1.699296e-06	-5.769731e+00	...	4	28779281	...	1.389889e-07
TCGA-AX-A0IW-01A-11W-A062-09	50	50	0	38	0	coding only	1	28835473	...	12	36	50	4.161541e-07	1.248462e-06	1.733975e-06	-5.760957e+00	...	2	28779281	...	6.949444e-08
TCGA-AX-A0J0-01A-11D-A117-09	8416	8264	152	6808	1.806084e-02	coding only	1	28835473	...	1437	6676	8264	4.983445e-05	2.315204e-04	2.865914e-04	-3.542737e+00	...	9	28779281	...	3.127250e-07
TCGA-AX-A0J1-01A-11W-A062-09	5372	5295	77	3787	1.433358e-02	coding only	1	28835473	...	1508	3758	5372	5.229670e-05	1.303256e-04	1.862983e-04	-3.729791e+00	...	28	28779281	...	9.729222e-07
TCGA-AX-A1C7-01A-11D-A135-09	49	48	1	38	2.040816e-02	coding only	1	28835473	...	10	35	48	3.467951e-07	1.213783e-06	1.664616e-06	-5.778686e+00	...	2	28779281	...	6.949444e-08
TCGA-AX-A1C8-01A-11D-A135-09	64	63	1	52	1.562500e-02	coding only	1	28835473	...	11	48	64	3.814746e-07	1.664616e-06	2.219488e-06	-5.653747e+00	...	4	28779281	...	1.389889e-07
TCGA-AX-A1CP-01A-11D-A135-09	27	27	0	21	0	coding only	1	28835473	...	6	21	27	2.080770e-07	7.282697e-07	9.363467e-07	-6.028563e+00	...	0	28779281	...	0
TCGA-AX-A2H5-01A-11D-A17D-09	51	50	1	42	1.960784e-02	coding only	1	28835473	...	8	35	49	2.774361e-07	1.213783e-06	1.699296e-06	-5.769731e+00	...	5	28779281	...	1.737361e-07
TCGA-AX-A2HF-01A-11D-A17D-09	36	36	0	27	0	coding only	1	28835473	...	9	21	36	3.121156e-07	7.282697e-07	1.248462e-06	-5.903625e+00	...	6	28779281	...	2.084833e-07
TCGA-B5-A0JN-01A-11D-A10B-09	116	114	2	90	1.724138e-02	coding only	1	28835473	...	24	84	114	8.323082e-07	2.913079e-06	3.953464e-06	-5.403022e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A0JR-01A-13W-A062-09	604	593	11	429	1.821192e-02	coding only	1	28835473	...	164	412	604	5.687439e-06	1.428796e-05	2.094642e-05	-4.678890e+00	...	17	28779281	...	5.907027e-07
TCGA-B5-A0JS-01A-11D-A10B-09	33	33	0	27	0	coding only	1	28835473	...	6	24	32	2.080770e-07	8.323082e-07	1.109744e-06	-5.954777e+00	...	2	28779281	...	6.949444e-08
TCGA-B5-A0JT-01A-21D-A122-09	59	59	0	48	0	coding only	1	28835473	...	11	44	59	3.814746e-07	1.525898e-06	2.046091e-06	-5.689075e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A0JV-01A-11D-A10B-09	283	277	6	200	2.120141e-02	coding only	1	28835473	...	76	188	278	2.635643e-06	6.519747e-06	9.640903e-06	-5.015882e+00	...	7	28779281	...	2.432305e-07
TCGA-B5-A0JY-01A-11D-A10B-09	11117	10921	196	8759	1.763066e-02	coding only	1	28835473	...	2125	8595	10910	7.369395e-05	2.980704e-04	3.783534e-04	-3.422102e+00	...	7	28779281	...	2.432305e-07
TCGA-B5-A0JZ-01A-11W-A062-09	474	465	9	346	1.898734e-02	coding only	1	28835473	...	119	312	474	4.126861e-06	1.082001e-05	1.643809e-05	-4.784149e+00	...	34	28779281	...	1.181405e-06
TCGA-B5-A0K0-01A-11W-A062-09	21	21	0	18	0	coding only	1	28835473	...	3	17	21	1.040385e-07	5.895516e-07	7.282697e-07	-6.137708e+00	...	1	28779281	...	3.474722e-08
TCGA-B5-A0K1-01A-11W-A062-09	55	53	2	38	3.636364e-02	coding only	1	28835473	...	15	34	55	5.201926e-07	1.179103e-06	1.907373e-06	-5.719564e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A0K2-01A-12W-A10C-09	261	256	5	188	1.915709e-02	coding only	1	28835473	...	68	180	260	2.358207e-06	6.242311e-06	9.016672e-06	-5.044954e+00	...	8	28779281	...	2.779778e-07
TCGA-B5-A0K3-01A-11W-A062-09	49	48	1	34	2.040816e-02	coding only	1	28835473	...	14	32	49	4.855131e-07	1.109744e-06	1.699296e-06	-5.769731e+00	...	2	28779281	...	6.949444e-08
TCGA-B5-A0K4-01A-11W-A062-09	53	53	0	46	0	coding only	1	28835473	...	7	41	53	2.427566e-07	1.421860e-06	1.838014e-06	-5.735651e+00	...	5	28779281	...	1.737361e-07
TCGA-B5-A0K6-01A-11W-A062-09	232	229	3	177	1.293103e-02	coding only	1	28835473	...	52	170	232	1.803334e-06	5.895516e-06	8.045646e-06	-5.094439e+00	...	7	28779281	...	2.432305e-07
TCGA-B5-A0K7-01A-11W-A10C-09	53	52	1	39	1.886792e-02	coding only	1	28835473	...	13	34	52	4.508336e-07	1.179103e-06	1.803334e-06	-5.743924e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A0K8-01A-11D-A14K-09	51	51	0	37	0	coding only	1	28835473	...	14	28	50	4.855131e-07	9.710262e-07	1.733975e-06	-5.760957e+00	...	8	28779281	...	2.779778e-07
TCGA-B5-A0K9-01A-21D-A10O-09	719	709	10	511	1.390821e-02	coding only	1	28835473	...	195	468	705	6.762504e-06	1.623001e-05	2.444905e-05	-4.611738e+00	...	32	28779281	...	1.111911e-06
TCGA-B5-A11E-01A-11D-A10M-09	10940	10737	203	8059	1.855576e-02	coding only	1	28835473	...	2640	7929	10776	9.155390e-05	2.749738e-04	3.737064e-04	-3.427469e+00	...	9	28779281	...	3.127250e-07
TCGA-B5-A11F-01A-11D-A10M-09	50	50	0	39	0	coding only	1	28835473	...	10	35	48	3.467951e-07	1.213783e-06	1.664616e-06	-5.778686e+00	...	3	28779281	...	1.042417e-07
TCGA-B5-A11G-01A-13D-A122-09	528	519	9	378	1.704545e-02	coding only	1	28835473	...	138	348	521	4.785772e-06	1.206847e-05	1.806802e-05	-4.743089e+00	...	26	28779281	...	9.034277e-07
TCGA-B5-A11H-01A-11D-A122-09	980	954	26	699	2.653061e-02	coding only	1	28835473	...	253	631	966	8.773915e-06	2.188277e-05	3.350040e-05	-4.474950e+00	...	58	28779281	...	2.015339e-06
TCGA-B5-A11I-01A-11D-A10M-09	47	47	0	37	0	coding only	1	28835473	...	10	32	47	3.467951e-07	1.109744e-06	1.629937e-06	-5.787829e+00	...	5	28779281	...	1.737361e-07
TCGA-B5-A11J-01A-11D-A122-09	424	416	8	308	1.886792e-02	coding only	1	28835473	...	108	281	419	3.745387e-06	9.744942e-06	1.453071e-05	-4.837713e+00	...	22	28779281	...	7.644388e-07
TCGA-B5-A11M-01A-11D-A122-09	35	33	2	28	5.714286e-02	coding only	1	28835473	...	5	27	35	1.733975e-07	9.363467e-07	1.213783e-06	-5.915859e+00	...	1	28779281	...	3.474722e-08
TCGA-B5-A11N-01A-11D-A122-09	1943	1890	53	1520	2.727741e-02	coding only	1	28835473	...	360	1482	1893	1.248462e-05	5.139503e-05	6.564831e-05	-4.182776e+00	...	6	28779281	...	2.084833e-07
TCGA-B5-A11O-01A-11D-A122-09	67	66	1	51	1.492537e-02	coding only	1	28835473	...	15	48	67	5.201926e-07	1.664616e-06	2.323527e-06	-5.633852e+00	...	3	28779281	...	1.042417e-07
TCGA-B5-A11Q-01A-11D-A122-09	45	45	0	37	0	coding only	1	28835473	...	8	33	45	2.774361e-07	1.144424e-06	1.560578e-06	-5.806715e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A11R-01A-11D-A122-09	705	689	16	522	2.269504e-02	coding only	1	28835473	...	162	511	690	5.618080e-06	1.772123e-05	2.392886e-05	-4.621078e+00	...	3	28779281	...	1.042417e-07
TCGA-B5-A11S-01A-11D-A122-09	50	50	0	39	0	coding only	1	28835473	...	11	38	50	3.814746e-07	1.317821e-06	1.733975e-06	-5.760957e+00	...	1	28779281	...	3.474722e-08
TCGA-B5-A11U-01A-11D-A122-09	327	321	6	219	1.834862e-02	coding only	1	28835473	...	100	201	324	3.467951e-06	6.970581e-06	1.123616e-05	-4.949382e+00	...	17	28779281	...	5.907027e-07
TCGA-B5-A11V-01A-11D-A10M-09	64	63	1	51	1.562500e-02	coding only	1	28835473	...	12	47	64	4.161541e-07	1.629937e-06	2.219488e-06	-5.653747e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A11W-01A-12D-A122-09	76	75	1	62	1.315789e-02	coding only	1	28835473	...	13	58	75	4.508336e-07	2.011411e-06	2.600963e-06	-5.584866e+00	...	3	28779281	...	1.042417e-07
TCGA-B5-A11X-01A-11D-A10M-09	65	65	0	50	0	coding only	1	28835473	...	15	45	64	5.201926e-07	1.560578e-06	2.219488e-06	-5.653747e+00	...	4	28779281	...	1.389889e-07
TCGA-B5-A11Y-01A-21D-A10M-09	1148	1125	23	798	2.003484e-02	coding only	1	28835473	...	320	775	1127	1.109744e-05	2.687662e-05	3.908380e-05	-4.408003e+00	...	10	28779281	...	3.474722e-07
TCGA-B5-A11Z-01A-11D-A10M-09	66	63	3	45	4.545455e-02	coding only	1	28835473	...	18	42	66	6.242311e-07	1.456539e-06	2.288847e-06	-5.640383e+00	...	3	28779281	...	1.042417e-07
TCGA-B5-A121-01A-31D-A122-09	34	33	1	25	2.941176e-02	coding only	1	28835473	...	7	22	33	2.427566e-07	7.629492e-07	1.144424e-06	-5.941413e+00	...	3	28779281	...	1.042417e-07
TCGA-B5-A1MU-01A-11D-A13L-09	27	27	0	26	0	coding only	1	28835473	...	1	24	26	3.467951e-08	8.323082e-07	9.016672e-07	-6.044954e+00	...	1	28779281	...	3.474722e-08
TCGA-B5-A1MY-01A-11D-A142-09	48	47	1	39	2.083333e-02	coding only	1	28835473	...	7	35	47	2.427566e-07	1.213783e-06	1.629937e-06	-5.787829e+00	...	4	28779281	...	1.389889e-07
TCGA-BG-A0LW-01A-11W-A062-09	33	33	0	26	0	coding only	1	28835473	...	7	25	33	2.427566e-07	8.669877e-07	1.144424e-06	-5.941413e+00	...	1	28779281	...	3.474722e-08
TCGA-BG-A0LX-01A-11W-A062-09	464	460	4	318	8.620690e-03	coding only	1	28835473	...	142	294	463	4.924490e-06	1.019578e-05	1.605661e-05	-4.794346e+00	...	23	28779281	...	7.991861e-07
TCGA-BG-A0M0-01A-11W-A10C-09	143	139	4	106	2.797203e-02	coding only	1	28835473	...	33	95	141	1.144424e-06	3.294553e-06	4.889811e-06	-5.310708e+00	...	9	28779281	...	3.127250e-07
TCGA-BG-A0M2-01A-11D-A10O-09	33	31	2	22	6.060606e-02	coding only	1	28835473	...	9	19	33	3.121156e-07	6.589106e-07	1.144424e-06	-5.941413e+00	...	3	28779281	...	1.042417e-07
TCGA-BG-A0M3-01A-11W-A10C-09	76	74	2	57	2.631579e-02	coding only	1	28835473	...	16	51	75	5.548721e-07	1.768655e-06	2.600963e-06	-5.584866e+00	...	6	28779281	...	2.084833e-07
TCGA-BG-A0M4-01A-11W-A10C-09	451	445	6	330	1.330377e-02	coding only	1	28835473	...	114	309	446	3.953464e-06	1.071597e-05	1.546706e-05	-4.810592e+00	...	17	28779281	...	5.907027e-07
TCGA-BG-A0M6-01A-31D-A10B-09	45	45	0	35	0	coding only	1	28835473	...	10	33	44	3.467951e-07	1.144424e-06	1.525898e-06	-5.816474e+00	...	1	28779281	...	3.474722e-08
TCGA-BG-A0M7-01A-11W-A062-09	58	58	0	45	0	coding only	1	28835473	...	13	40	58	4.508336e-07	1.387180e-06	2.011411e-06	-5.696499e+00	...	5	28779281	...	1.737361e-07
TCGA-BG-A0M8-01A-12D-A10B-09	64	63	1	45	1.562500e-02	coding only	1	28835473	...	18	43	64	6.242311e-07	1.491219e-06	2.219488e-06	-5.653747e+00	...	2	28779281	...	6.949444e-08
TCGA-BG-A0M9-01A-21W-A10C-09	58	55	3	46	5.172414e-02	coding only	1	28835473	...	9	43	58	3.121156e-07	1.491219e-06	2.011411e-06	-5.696499e+00	...	3	28779281	...	1.042417e-07
TCGA-BG-A0MC-01A-21W-A062-09	56	54	2	42	3.571429e-02	coding only	1	28835473	...	12	39	55	4.161541e-07	1.352501e-06	1.907373e-06	-5.719564e+00	...	3	28779281	...	1.042417e-07
TCGA-BG-A0MG-01A-21D-A10B-09	117	117	0	84	0	coding only	1	28835473	...	32	77	116	1.109744e-06	2.670322e-06	4.022823e-06	-5.395469e+00	...	7	28779281	...	2.432305e-07
TCGA-BG-A0MI-01A-11W-A062-09	64	64	0	47	0	coding only	1	28835473	...	17	45	64	5.895516e-07	1.560578e-06	2.219488e-06	-5.653747e+00	...	2	28779281	...	6.949444e-08
TCGA-BG-A0MO-01A-11W-A062-09	47	47	0	35	0	coding only	1	28835473	...	12	32	47	4.161541e-07	1.109744e-06	1.629937e-06	-5.787829e+00	...	3	28779281	...	1.042417e-07
TCGA-BG-A0MQ-01A-11D-A10B-09	591	579	12	410	2.030457e-02	coding only	1	28835473	...	166	382	583	5.756798e-06	1.324757e-05	2.021815e-05	-4.694259e+00	...	24	28779281	...	8.339333e-07
TCGA-BG-A0MS-01A-11D-A10B-09	49	48	1	38	2.040816e-02	coding only	1	28835473	...	10	31	48	3.467951e-07	1.075065e-06	1.664616e-06	-5.778686e+00	...	6	28779281	...	2.084833e-07
TCGA-BG-A0MT-01A-11D-A10B-09	50	48	2	39	4.000000e-02	coding only	1	28835473	...	9	32	50	3.121156e-07	1.109744e-06	1.733975e-06	-5.760957e+00	...	7	28779281	...	2.432305e-07
TCGA-BG-A0MU-01A-11D-A10B-09	71	70	1	50	1.408451e-02	coding only	1	28835473	...	19	45	70	6.589106e-07	1.560578e-06	2.427566e-06	-5.614829e+00	...	5	28779281	...	1.737361e-07
TCGA-BG-A0RY-01A-11D-A10B-09	56	55	1	42	1.785714e-02	coding only	1	28835473	...	13	39	56	4.508336e-07	1.352501e-06	1.942052e-06	-5.711739e+00	...	3	28779281	...	1.042417e-07
TCGA-BG-A0VT-01A-11D-A10M-09	30	28	2	23	6.666667e-02	coding only	1	28835473	...	5	21	30	1.733975e-07	7.282697e-07	1.040385e-06	-5.982806e+00	...	2	28779281	...	6.949444e-08
TCGA-BG-A0VV-01A-21D-A122-09	42	42	0	34	0	coding only	1	28835473	...	7	33	41	2.427566e-07	1.144424e-06	1.421860e-06	-5.847143e+00	...	1	28779281	...	3.474722e-08
TCGA-BG-A0VW-01A-11D-A122-09	319	314	5	211	1.567398e-02	coding only	1	28835473	...	97	191	309	3.363912e-06	6.623786e-06	1.071597e-05	-4.969969e+00	...	16	28779281	...	5.559555e-07
TCGA-BG-A0VX-01A-11D-A122-09	215	213	2	157	9.302326e-03	coding only	1	28835473	...	56	155	214	1.942052e-06	5.375324e-06	7.421415e-06	-5.129513e+00	...	2	28779281	...	6.949444e-08
TCGA-BG-A0VZ-01A-11D-A10G-09	329	327	2	228	6.079027e-03	coding only	1	28835473	...	98	210	324	3.398592e-06	7.282697e-06	1.123616e-05	-4.949382e+00	...	14	28779281	...	4.864611e-07
TCGA-BG-A0W1-01A-12D-A10G-09	74	74	0	59	0	coding only	1	28835473	...	15	44	73	5.201926e-07	1.525898e-06	2.531604e-06	-5.596604e+00	...	14	28779281	...	4.864611e-07
TCGA-BG-A0W2-01A-11D-A117-09	43	41	2	28	4.651163e-02	coding only	1	28835473	...	12	27	42	4.161541e-07	9.363467e-07	1.456539e-06	-5.836678e+00	...	1	28779281	...	3.474722e-08
TCGA-BG-A0YU-01A-21D-A10M-09	22	22	0	14	0	coding only	1	28835473	...	8	13	22	2.774361e-07	4.508336e-07	7.629492e-07	-6.117504e+00	...	1	28779281	...	3.474722e-08
TCGA-BG-A0YV-01A-11D-A10M-09	85	82	3	67	3.529412e-02	coding only	1	28835473	...	14	62	84	4.855131e-07	2.150129e-06	2.913079e-06	-5.535648e+00	...	5	28779281	...	1.737361e-07
TCGA-BG-A186-01A-11D-A12J-09	34	33	1	26	2.941176e-02	coding only	1	28835473	...	7	20	33	2.427566e-07	6.935901e-07	1.144424e-06	-5.941413e+00	...	5	28779281	...	1.737361e-07
TCGA-BG-A187-01A-11D-A12J-09	90	89	1	73	1.111111e-02	coding only	1	28835473	...	16	67	88	5.548721e-07	2.323527e-06	3.051797e-06	-5.515444e+00	...	4	28779281	...	1.389889e-07
TCGA-BG-A18A-01A-21D-A12J-09	72	72	0	51	0	coding only	1	28835473	...	20	45	70	6.935901e-07	1.560578e-06	2.427566e-06	-5.614829e+00	...	5	28779281	...	1.737361e-07
TCGA-BG-A18B-01A-11D-A12J-09	343	335	8	256	2.332362e-02	coding only	1	28835473	...	78	238	337	2.705002e-06	8.253723e-06	1.168699e-05	-4.932297e+00	...	14	28779281	...	4.864611e-07
TCGA-BG-A18C-01A-11D-A12J-09	49	47	2	38	4.081633e-02	coding only	1	28835473	...	9	33	47	3.121156e-07	1.144424e-06	1.629937e-06	-5.787829e+00	...	3	28779281	...	1.042417e-07
TCGA-BG-A2AE-01A-11D-A16D-09	66	63	3	46	4.545455e-02	coding only	1	28835473	...	17	42	65	5.895516e-07	1.456539e-06	2.254168e-06	-5.647014e+00	...	3	28779281	...	1.042417e-07
TCGA-BK-A0C9-01A-11W-A027-09	453	445	8	334	1.766004e-02	coding only	1	28835473	...	111	324	453	3.849425e-06	1.123616e-05	1.570982e-05	-4.803829e+00	...	10	28779281	...	3.474722e-07
TCGA-BK-A0CA-01A-21D-A122-09	48	47	1	36	2.083333e-02	coding only	1	28835473	...	11	33	47	3.814746e-07	1.144424e-06	1.629937e-06	-5.787829e+00	...	2	28779281	...	6.949444e-08
TCGA-BK-A0CB-01A-32D-A10B-09	68	67	1	47	1.470588e-02	coding only	1	28835473	...	19	41	64	6.589106e-07	1.421860e-06	2.219488e-06	-5.653747e+00	...	3	28779281	...	1.042417e-07
TCGA-BK-A0CC-01A-21W-A027-09	45	45	0	34	0	coding only	1	28835473	...	11	29	45	3.814746e-07	1.005706e-06	1.560578e-06	-5.806715e+00	...	5	28779281	...	1.737361e-07
TCGA-BK-A139-01A-11D-A122-09	102	101	1	76	9.803922e-03	coding only	1	28835473	...	25	74	102	8.669877e-07	2.566284e-06	3.537310e-06	-5.451327e+00	...	2	28779281	...	6.949444e-08
TCGA-BK-A13C-01A-11D-A122-09	49	48	1	37	2.040816e-02	coding only	1	28835473	...	11	36	49	3.814746e-07	1.248462e-06	1.699296e-06	-5.769731e+00	...	1	28779281	...	3.474722e-08
TCGA-BS-A0T9-01A-11D-A12J-09	63	62	1	51	1.587302e-02	coding only	1	28835473	...	10	48	61	3.467951e-07	1.664616e-06	2.115450e-06	-5.674597e+00	...	2	28779281	...	6.949444e-08
TCGA-BS-A0TA-01A-11D-A10B-09	404	398	6	284	1.485149e-02	coding only	1	28835473	...	113	262	402	3.918784e-06	9.086031e-06	1.394116e-05	-4.855701e+00	...	20	28779281	...	6.949444e-07
TCGA-BS-A0TC-01A-11D-A10B-09	1431	1403	28	1175	1.956674e-02	coding only	1	28835473	...	225	1156	1408	7.802889e-06	4.008951e-05	4.882875e-05	-4.311324e+00	...	1	28779281	...	3.474722e-08
TCGA-BS-A0TD-01A-11D-A10B-09	39	37	2	27	5.128205e-02	coding only	1	28835473	...	10	22	39	3.467951e-07	7.629492e-07	1.352501e-06	-5.868862e+00	...	5	28779281	...	1.737361e-07
TCGA-BS-A0TE-01A-11D-A10B-09	336	325	11	222	3.273810e-02	exome+100bp flanks	2	35817557	...	99	210	328	2.764008e-06	5.863046e-06	9.157520e-06	-5.038222e+00	...	8	32102662	...	2.492005e-07
TCGA-BS-A0TG-01A-32D-A10B-09	42	42	0	32	0	coding only	1	28835473	...	10	29	42	3.467951e-07	1.005706e-06	1.456539e-06	-5.836678e+00	...	3	28779281	...	1.042417e-07
TCGA-BS-A0TI-01A-11D-A10B-09	86	84	2	72	2.325581e-02	coding only	1	28835473	...	12	67	86	4.161541e-07	2.323527e-06	2.982438e-06	-5.525429e+00	...	5	28779281	...	1.737361e-07
TCGA-BS-A0TJ-01A-11D-A10B-09	626	615	11	448	1.757188e-02	coding only	1	28835473	...	162	427	619	5.618080e-06	1.480815e-05	2.146662e-05	-4.668236e+00	...	19	28779281	...	6.601972e-07
TCGA-BS-A0U5-01A-11D-A10G-09	63	63	0	52	0	coding only	1	28835473	...	10	45	59	3.467951e-07	1.560578e-06	2.046091e-06	-5.689075e+00	...	4	28779281	...	1.389889e-07
TCGA-BS-A0U7-01A-21D-A10B-09	165	162	3	115	1.818182e-02	coding only	1	28835473	...	46	107	162	1.595257e-06	3.710707e-06	5.618080e-06	-5.250412e+00	...	6	28779281	...	2.084833e-07
TCGA-BS-A0U8-01A-11D-A10B-09	387	380	7	270	1.808786e-02	coding only	1	28835473	...	109	242	384	3.780066e-06	8.392441e-06	1.331693e-05	-4.875596e+00	...	26	28779281	...	9.034277e-07
TCGA-BS-A0U9-01B-21D-A10M-09	40	40	0	36	0	coding only	1	28835473	...	3	28	39	1.040385e-07	9.710262e-07	1.352501e-06	-5.868862e+00	...	8	28779281	...	2.779778e-07
TCGA-BS-A0UA-01A-11D-A122-09	323	321	2	237	6.191950e-03	coding only	1	28835473	...	84	218	320	2.913079e-06	7.560133e-06	1.109744e-05	-4.954777e+00	...	16	28779281	...	5.559555e-07
TCGA-BS-A0UF-01A-11D-A10B-09	9054	8883	171	7268	1.888668e-02	coding only	1	28835473	...	1577	7114	8860	5.468958e-05	2.467100e-04	3.072604e-04	-3.512493e+00	...	19	28779281	...	6.601972e-07
TCGA-BS-A0UJ-01A-12D-A10B-09	1954	1919	35	1413	1.791198e-02	coding only	1	28835473	...	498	1373	1921	1.727039e-05	4.761496e-05	6.661933e-05	-4.176400e+00	...	16	28779281	...	5.559555e-07
TCGA-BS-A0UL-01A-11D-A10G-09	388	377	11	289	2.835052e-02	coding only	1	28835473	...	87	268	381	3.017117e-06	9.294108e-06	1.321289e-05	-4.879002e+00	...	15	28779281	...	5.212083e-07
TCGA-BS-A0UM-01A-11W-A10C-09	362	356	6	267	1.657459e-02	coding only	1	28835473	...	88	235	357	3.051797e-06	8.149684e-06	1.238058e-05	-4.907259e+00	...	29	28779281	...	1.007669e-06
TCGA-BS-A0UT-01A-11D-A10B-09	47	46	1	39	2.127660e-02	coding only	1	28835473	...	7	34	47	2.427566e-07	1.179103e-06	1.629937e-06	-5.787829e+00	...	4	28779281	...	1.389889e-07
TCGA-BS-A0UV-01A-11D-A10B-09	9857	9671	186	7651	1.886984e-02	coding only	1	28835473	...	1990	7501	9669	6.901222e-05	2.601310e-04	3.353162e-04	-3.474546e+00	...	8	28779281	...	2.779778e-07
TCGA-BS-A0V6-01A-11D-A122-09	54	54	0	43	0	coding only	1	28835473	...	11	39	53	3.814746e-07	1.352501e-06	1.838014e-06	-5.735651e+00	...	3	28779281	...	1.042417e-07
TCGA-BS-A0V7-01A-21D-A122-09	40	39	1	36	2.500000e-02	coding only	1	28835473	...	3	33	39	1.040385e-07	1.144424e-06	1.352501e-06	-5.868862e+00	...	2	28779281	...	6.949444e-08
TCGA-BS-A0V8-01A-11D-A122-09	79	78	1	63	1.265823e-02	coding only	1	28835473	...	15	56	78	5.201926e-07	1.942052e-06	2.705002e-06	-5.567832e+00	...	6	28779281	...	2.084833e-07
TCGA-BS-A0WQ-01A-21D-A10G-09	54	54	0	40	0	coding only	1	28835473	...	13	37	53	4.508336e-07	1.283142e-06	1.838014e-06	-5.735651e+00	...	3	28779281	...	1.042417e-07
TCGA-D1-A0ZN-01A-11D-A122-09	52	51	1	36	1.923077e-02	coding only	1	28835473	...	15	30	51	5.201926e-07	1.040385e-06	1.768655e-06	-5.752357e+00	...	5	28779281	...	1.737361e-07
TCGA-D1-A0ZO-01A-11D-A122-09	553	546	7	397	1.265823e-02	coding only	1	28835473	...	149	355	548	5.167247e-06	1.231123e-05	1.900437e-05	-4.721147e+00	...	37	28779281	...	1.285647e-06
TCGA-D1-A0ZP-01A-21D-A10M-09	39	37	2	28	5.128205e-02	coding only	1	28835473	...	8	23	38	2.774361e-07	7.976287e-07	1.317821e-06	-5.880143e+00	...	5	28779281	...	1.737361e-07
TCGA-D1-A0ZQ-01A-11D-A122-09	92	91	1	71	1.086957e-02	coding only	1	28835473	...	20	57	86	6.935901e-07	1.976732e-06	2.982438e-06	-5.525429e+00	...	8	28779281	...	2.779778e-07
TCGA-D1-A0ZR-01A-21D-A10M-09	56	54	2	43	3.571429e-02	coding only	1	28835473	...	11	38	55	3.814746e-07	1.317821e-06	1.907373e-06	-5.719564e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A0ZS-01A-11D-A122-09	389	374	15	274	3.856041e-02	exome+100bp flanks	2	35817557	...	98	247	379	2.736088e-06	6.896059e-06	1.058140e-05	-4.975457e+00	...	19	32102662	...	5.918512e-07
TCGA-D1-A0ZU-01A-11D-A10M-09	40	40	0	28	0	coding only	1	28835473	...	12	24	39	4.161541e-07	8.323082e-07	1.352501e-06	-5.868862e+00	...	3	28779281	...	1.042417e-07
TCGA-D1-A0ZV-01A-11D-A10M-09	42	41	1	34	2.380952e-02	coding only	1	28835473	...	7	31	42	2.427566e-07	1.075065e-06	1.456539e-06	-5.836678e+00	...	3	28779281	...	1.042417e-07
TCGA-D1-A0ZZ-01A-11D-A10M-09	73	73	0	56	0	coding only	1	28835473	...	16	51	71	5.548721e-07	1.768655e-06	2.462245e-06	-5.608669e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A101-01A-12D-A10M-09	274	266	8	184	2.919708e-02	coding only	1	28835473	...	78	173	269	2.705002e-06	5.999555e-06	9.328787e-06	-5.030175e+00	...	11	28779281	...	3.822194e-07
TCGA-D1-A102-01A-11D-A10M-09	52	48	4	34	7.692308e-02	coding only	1	28835473	...	14	28	51	4.855131e-07	9.710262e-07	1.768655e-06	-5.752357e+00	...	6	28779281	...	2.084833e-07
TCGA-D1-A103-01A-11D-A10M-09	7977	7837	140	5850	1.755046e-02	coding only	1	28835473	...	1952	5752	7849	6.769440e-05	1.994765e-04	2.721995e-04	-3.565113e+00	...	8	28779281	...	2.779778e-07
TCGA-D1-A15V-01A-11D-A122-09	45	45	0	36	0	coding only	1	28835473	...	9	28	43	3.121156e-07	9.710262e-07	1.491219e-06	-5.826459e+00	...	6	28779281	...	2.084833e-07
TCGA-D1-A15W-01A-11D-A122-09	74	73	1	60	1.351351e-02	coding only	1	28835473	...	12	52	72	4.161541e-07	1.803334e-06	2.496925e-06	-5.602595e+00	...	7	28779281	...	2.432305e-07
TCGA-D1-A15X-01A-11D-A122-09	1841	1810	31	1299	1.683867e-02	coding only	1	28835473	...	505	1275	1819	1.751315e-05	4.421637e-05	6.308202e-05	-4.200094e+00	...	8	28779281	...	2.779778e-07
TCGA-D1-A15Z-01A-11D-A122-09	83	82	1	67	1.204819e-02	coding only	1	28835473	...	15	56	82	5.201926e-07	1.942052e-06	2.843720e-06	-5.546113e+00	...	10	28779281	...	3.474722e-07
TCGA-D1-A160-01A-11D-A122-09	477	469	8	353	1.677149e-02	coding only	1	28835473	...	115	328	470	3.988143e-06	1.137488e-05	1.629937e-05	-4.787829e+00	...	19	28779281	...	6.601972e-07
TCGA-D1-A161-01A-11D-A122-09	97	97	0	71	0	coding only	1	28835473	...	26	63	96	9.016672e-07	2.184809e-06	3.329233e-06	-5.477656e+00	...	7	28779281	...	2.432305e-07
TCGA-D1-A163-01A-11D-A12J-09	527	517	10	369	1.897533e-02	coding only	1	28835473	...	144	341	517	4.993849e-06	1.182571e-05	1.792931e-05	-4.746437e+00	...	21	28779281	...	7.296916e-07
TCGA-D1-A165-01A-11D-A12J-09	66	64	2	51	3.030303e-02	coding only	1	28835473	...	13	44	65	4.508336e-07	1.525898e-06	2.254168e-06	-5.647014e+00	...	6	28779281	...	2.084833e-07
TCGA-D1-A167-01A-11D-A12J-09	1915	1891	24	1332	1.253264e-02	coding only	1	28835473	...	550	1310	1891	1.907373e-05	4.543015e-05	6.557895e-05	-4.183236e+00	...	7	28779281	...	2.432305e-07
TCGA-D1-A168-01A-31D-A12J-09	62	61	1	48	1.612903e-02	coding only	1	28835473	...	13	44	62	4.508336e-07	1.525898e-06	2.150129e-06	-5.667535e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A169-01A-11D-A12J-09	53	53	0	40	0	coding only	1	28835473	...	13	34	51	4.508336e-07	1.179103e-06	1.768655e-06	-5.752357e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A16B-01A-11D-A12J-09	54	53	1	44	1.851852e-02	coding only	1	28835473	...	9	36	52	3.121156e-07	1.248462e-06	1.803334e-06	-5.743924e+00	...	6	28779281	...	2.084833e-07
TCGA-D1-A16D-01A-11D-A12J-09	41	40	1	35	2.439024e-02	coding only	1	28835473	...	5	31	41	1.733975e-07	1.075065e-06	1.421860e-06	-5.847143e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A16E-01A-22D-A12J-09	67	66	1	47	1.492537e-02	coding only	1	28835473	...	18	42	66	6.242311e-07	1.456539e-06	2.288847e-06	-5.640383e+00	...	5	28779281	...	1.737361e-07
TCGA-D1-A16F-01A-11D-A12J-09	388	382	6	264	1.546392e-02	coding only	1	28835473	...	117	234	380	4.057502e-06	8.115005e-06	1.317821e-05	-4.880143e+00	...	23	28779281	...	7.991861e-07
TCGA-D1-A16G-01A-31D-A12J-09	34	34	0	25	0	coding only	1	28835473	...	9	21	33	3.121156e-07	7.282697e-07	1.144424e-06	-5.941413e+00	...	3	28779281	...	1.042417e-07
TCGA-D1-A16I-01A-11D-A12J-09	41	41	0	31	0	coding only	1	28835473	...	10	27	41	3.467951e-07	9.363467e-07	1.421860e-06	-5.847143e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A16J-01A-11D-A12J-09	226	222	4	162	1.769912e-02	coding only	1	28835473	...	58	157	220	2.011411e-06	5.444683e-06	7.629492e-06	-5.117504e+00	...	1	28779281	...	3.474722e-08
TCGA-D1-A16N-01A-11D-A12J-09	121	120	1	93	8.264463e-03	coding only	1	28835473	...	27	85	118	9.363467e-07	2.947758e-06	4.092182e-06	-5.388045e+00	...	5	28779281	...	1.737361e-07
TCGA-D1-A16O-01A-11D-A12J-09	38	38	0	30	0	coding only	1	28835473	...	8	24	38	2.774361e-07	8.323082e-07	1.317821e-06	-5.880143e+00	...	6	28779281	...	2.084833e-07
TCGA-D1-A16Q-01A-12D-A12J-09	32	32	0	27	0	coding only	1	28835473	...	5	22	31	1.733975e-07	7.629492e-07	1.075065e-06	-5.968565e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A16R-01A-11D-A12J-09	43	43	0	35	0	coding only	1	28835473	...	8	31	42	2.774361e-07	1.075065e-06	1.456539e-06	-5.836678e+00	...	3	28779281	...	1.042417e-07
TCGA-D1-A16S-01A-11D-A12J-09	49	47	2	39	4.081633e-02	coding only	1	28835473	...	7	36	47	2.427566e-07	1.248462e-06	1.629937e-06	-5.787829e+00	...	2	28779281	...	6.949444e-08
TCGA-D1-A16X-01A-11D-A12J-09	2204	2164	40	1728	1.814882e-02	coding only	1	28835473	...	432	1690	2157	1.498155e-05	5.860837e-05	7.480370e-05	-4.126077e+00	...	2	28779281	...	6.949444e-08
TCGA-D1-A16Y-01A-31D-A12J-09	1198	1178	20	938	1.669449e-02	coding only	1	28835473	...	236	929	1184	8.184364e-06	3.221726e-05	4.106054e-05	-4.386575e+00	...	0	28779281	...	0
TCGA-D1-A174-01A-11D-A12J-09	719	700	19	508	2.642559e-02	coding only	1	28835473	...	189	475	708	6.554427e-06	1.647277e-05	2.455309e-05	-4.609894e+00	...	24	28779281	...	8.339333e-07
TCGA-D1-A176-01A-11D-A12J-09	366	357	9	271	2.459016e-02	coding only	1	28835473	...	86	256	364	2.982438e-06	8.877954e-06	1.262334e-05	-4.898826e+00	...	14	28779281	...	4.864611e-07
TCGA-D1-A177-01A-21D-A12J-09	752	740	12	539	1.595745e-02	coding only	1	28835473	...	198	490	740	6.866542e-06	1.699296e-05	2.566284e-05	-4.590695e+00	...	40	28779281	...	1.389889e-06
TCGA-D1-A17A-01A-11D-A12J-09	229	224	5	166	2.183406e-02	coding only	1	28835473	...	58	157	224	2.011411e-06	5.444683e-06	7.768210e-06	-5.109679e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A17B-01A-22D-A12J-09	263	258	5	195	1.901141e-02	coding only	1	28835473	...	63	171	259	2.184809e-06	5.930196e-06	8.981992e-06	-5.046627e+00	...	21	28779281	...	7.296916e-07
TCGA-D1-A17C-01A-11D-A12J-09	59	59	0	43	0	coding only	1	28835473	...	16	36	59	5.548721e-07	1.248462e-06	2.046091e-06	-5.689075e+00	...	7	28779281	...	2.432305e-07
TCGA-D1-A17D-01A-12D-A12J-09	494	479	15	345	3.036437e-02	exome+100bp flanks	2	35817557	...	132	326	488	3.685343e-06	9.101682e-06	1.362460e-05	-4.865676e+00	...	15	32102662	...	4.672510e-07
TCGA-D1-A17F-01A-11D-A12J-09	226	223	3	158	1.327434e-02	coding only	1	28835473	...	65	148	223	2.254168e-06	5.132567e-06	7.733530e-06	-5.111622e+00	...	7	28779281	...	2.432305e-07
TCGA-D1-A17H-01A-11D-A12J-09	602	595	7	425	1.162791e-02	coding only	1	28835473	...	165	378	590	5.722119e-06	1.310885e-05	2.046091e-05	-4.689075e+00	...	41	28779281	...	1.424636e-06
TCGA-D1-A17K-01A-11D-A12J-09	58	58	0	42	0	coding only	1	28835473	...	16	37	57	5.548721e-07	1.283142e-06	1.976732e-06	-5.704052e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A17L-01A-11D-A12J-09	67	66	1	54	1.492537e-02	coding only	1	28835473	...	12	50	67	4.161541e-07	1.733975e-06	2.323527e-06	-5.633852e+00	...	4	28779281	...	1.389889e-07
TCGA-D1-A17M-01A-21D-A12J-09	405	399	6	298	1.481481e-02	coding only	1	28835473	...	97	275	395	3.363912e-06	9.536865e-06	1.369841e-05	-4.863330e+00	...	17	28779281	...	5.907027e-07
TCGA-D1-A17N-01A-11D-A12J-09	31	31	0	26	0	coding only	1	28835473	...	5	25	31	1.733975e-07	8.669877e-07	1.075065e-06	-5.968565e+00	...	1	28779281	...	3.474722e-08
TCGA-D1-A17Q-01A-11D-A12J-09	6453	6332	121	5039	1.875097e-02	coding only	1	28835473	...	1270	4944	6327	4.404297e-05	1.714555e-04	2.194172e-04	-3.658729e+00	...	5	28779281	...	1.737361e-07
TCGA-D1-A17R-01A-11D-A12J-09	165	165	0	128	0	coding only	1	28835473	...	37	121	164	1.283142e-06	4.196220e-06	5.687439e-06	-5.245083e+00	...	6	28779281	...	2.084833e-07
TCGA-D1-A17S-01A-11D-A12J-09	45	45	0	36	0	coding only	1	28835473	...	9	34	45	3.121156e-07	1.179103e-06	1.560578e-06	-5.806715e+00	...	2	28779281	...	6.949444e-08
TCGA-D1-A17T-01A-11D-A12J-09	65	62	3	48	4.615385e-02	coding only	1	28835473	...	14	44	64	4.855131e-07	1.525898e-06	2.219488e-06	-5.653747e+00	...	3	28779281	...	1.042417e-07
TCGA-D1-A17U-01A-21D-A12J-09	349	343	6	246	1.719198e-02	coding only	1	28835473	...	95	220	343	3.294553e-06	7.629492e-06	1.189507e-05	-4.924633e+00	...	23	28779281	...	7.991861e-07
TCGA-D1-A1NU-01A-11D-A14G-09	90	88	2	68	2.222222e-02	coding only	1	28835473	...	20	66	90	6.935901e-07	2.288847e-06	3.121156e-06	-5.505685e+00	...	2	28779281	...	6.949444e-08
TCGA-D1-A1NX-01A-11D-A16D-09	50	49	1	41	2.000000e-02	coding only	1	28835473	...	8	40	50	2.774361e-07	1.387180e-06	1.733975e-06	-5.760957e+00	...	1	28779281	...	3.474722e-08
TCGA-DI-A0WH-01A-12D-A12J-09	505	495	10	350	1.980198e-02	coding only	1	28835473	...	143	324	497	4.959170e-06	1.123616e-05	1.723572e-05	-4.763571e+00	...	23	28779281	...	7.991861e-07
TCGA-DI-A1NN-01A-11D-A16D-09	59	58	1	38	1.694915e-02	coding only	1	28835473	...	20	34	58	6.935901e-07	1.179103e-06	2.011411e-06	-5.696499e+00	...	3	28779281	...	1.042417e-07
TCGA-E6-A1LZ-01A-11D-A142-09	207	202	5	165	2.415459e-02	coding only	1	28835473	...	37	149	201	1.283142e-06	5.167247e-06	6.970581e-06	-5.156731e+00	...	11	28779281	...	3.822194e-07
TCGA-EO-A1Y5-01A-11D-A159-09	78	77	1	56	1.282051e-02	coding only	1	28835473	...	19	49	76	6.589106e-07	1.699296e-06	2.635643e-06	-5.579113e+00	...	7	28779281	...	2.432305e-07
TCGA-EO-A1Y8-01A-11D-A159-09	58	56	2	41	3.448276e-02	coding only	1	28835473	...	15	38	57	5.201926e-07	1.317821e-06	1.976732e-06	-5.704052e+00	...	2	28779281	...	6.949444e-08
TCGA-EY-A1GS-01A-11D-A13L-09	280	274	6	209	2.142857e-02	coding only	1	28835473	...	63	197	274	2.184809e-06	6.831863e-06	9.502185e-06	-5.022177e+00	...	7	28779281	...	2.432305e-07
TCGA-EY-A212-01A-11D-A14K-09	62	61	1	48	1.612903e-02	coding only	1	28835473	...	13	45	62	4.508336e-07	1.560578e-06	2.150129e-06	-5.667535e+00	...	3	28779281	...	1.042417e-07
TCGA-FI-A2D2-01A-11D-A17D-09	47	44	3	40	6.382979e-02	coding only	1	28835473	...	4	30	46	1.387180e-07	1.040385e-06	1.595257e-06	-5.797169e+00	...	10	28779281	...	3.474722e-07
TCGA-FI-A2EW-01A-11D-A17D-09	105	101	4	77	3.809524e-02	coding only	1	28835473	...	24	66	101	8.323082e-07	2.288847e-06	3.502630e-06	-5.455606e+00	...	7	28779281	...	2.432305e-07
TCGA-FI-A2EX-01A-11D-A17D-09	55	54	1	46	1.818182e-02	coding only	1	28835473	...	8	38	54	2.774361e-07	1.317821e-06	1.872693e-06	-5.727533e+00	...	7	28779281	...	2.432305e-07
TCGA-FI-A2F8-01A-12D-A17D-09	75	74	1	55	1.333333e-02	coding only	1	28835473	...	17	51	71	5.895516e-07	1.768655e-06	2.462245e-06	-5.608669e+00	...	3	28779281	...	1.042417e-07
