This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 12 molecular subtypes across 1080 patients, 810 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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3p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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5q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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8p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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9q gain cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q gain cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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15q gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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17p gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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1q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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2q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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3p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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4p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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6q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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7p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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9p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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17q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q loss cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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22q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xp loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
xq loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 82 arm-level events and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 810 significant findings detected.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
1p gain | 206 (19%) | 874 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00031 (0.000555) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00018 (0.000337) |
2p gain | 123 (11%) | 957 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00014 (0.000267) |
5q gain | 212 (20%) | 868 |
0.0113 (0.0151) |
0.00628 (0.00877) |
1e-05 (2.35e-05) |
0.00222 (0.00337) |
0.00233 (0.00352) |
0.00021 (0.000386) |
0.00474 (0.00676) |
0.00049 (0.000841) |
3e-05 (6.36e-05) |
2e-05 (4.34e-05) |
0.00035 (0.000616) |
0.0479 (0.0582) |
6p gain | 209 (19%) | 871 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00032 (0.000567) |
0.00322 (0.00474) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
6q gain | 150 (14%) | 930 |
1e-05 (2.35e-05) |
3e-05 (6.36e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
4e-05 (8.32e-05) |
0.01 (0.0135) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
10p gain | 214 (20%) | 866 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
10q gain | 124 (11%) | 956 |
0.0324 (0.0405) |
0.00071 (0.00119) |
1e-05 (2.35e-05) |
0.00076 (0.00128) |
0.0366 (0.0454) |
0.0335 (0.0418) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00035 (0.000616) |
1e-05 (2.35e-05) |
0.00014 (0.000267) |
0.00276 (0.0041) |
18p gain | 177 (16%) | 903 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00269 (0.004) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
21q gain | 196 (18%) | 884 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00082 (0.00137) |
0.002 (0.00306) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
22q gain | 99 (9%) | 981 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00013 (0.00025) |
0.0009 (0.00149) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00038 (0.000664) |
0.00603 (0.00844) |
3p loss | 186 (17%) | 894 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00232 (0.00351) |
3e-05 (6.36e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00735 (0.0102) |
4p loss | 353 (33%) | 727 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
4q loss | 312 (29%) | 768 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00017 (0.000319) |
0.00267 (0.00398) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00808 (0.0111) |
5p loss | 140 (13%) | 940 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
5q loss | 228 (21%) | 852 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
9p loss | 313 (29%) | 767 |
3e-05 (6.36e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00255 (0.00382) |
0.0405 (0.0501) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
5e-05 (0.000103) |
1e-05 (2.35e-05) |
9q loss | 283 (26%) | 797 |
0.00013 (0.00025) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00151 (0.00238) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
11p loss | 275 (25%) | 805 |
0.00384 (0.00554) |
0.0157 (0.0207) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0405 (0.0501) |
0.00107 (0.00175) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00315 (0.00465) |
0.0042 (0.00603) |
12p loss | 151 (14%) | 929 |
0.00154 (0.00242) |
0.00153 (0.00241) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00957 (0.013) |
0.00537 (0.00758) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
12q loss | 131 (12%) | 949 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
6e-05 (0.000122) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
14q loss | 266 (25%) | 814 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
15q loss | 320 (30%) | 760 |
9e-05 (0.000178) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0024 (0.00362) |
0.00889 (0.0121) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
16q loss | 593 (55%) | 487 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00166 (0.00259) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00134 (0.00214) |
8e-05 (0.00016) |
17q loss | 275 (25%) | 805 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
8e-05 (0.00016) |
0.00222 (0.00337) |
19p loss | 193 (18%) | 887 |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0416 (0.0514) |
0.00096 (0.00158) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
xp loss | 190 (18%) | 890 |
0.0001 (0.000196) |
0.00011 (0.000215) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00216 (0.0033) |
0.00033 (0.000584) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
3e-05 (6.36e-05) |
3e-05 (6.36e-05) |
0.0055 (0.00774) |
0.00309 (0.00457) |
2q gain | 73 (7%) | 1007 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0929 (0.107) |
3q gain | 212 (20%) | 868 |
0.00032 (0.000567) |
0.00016 (0.000303) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.023 (0.0296) |
0.086 (0.1) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00013 (0.00025) |
9p gain | 141 (13%) | 939 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0001 (0.000196) |
0.00784 (0.0108) |
4e-05 (8.32e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00047 (0.000809) |
0.113 (0.128) |
16p gain | 464 (43%) | 616 |
6e-05 (0.000122) |
0.00124 (0.00199) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.0572 (0.0686) |
3e-05 (6.36e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
2e-05 (4.34e-05) |
0.00411 (0.00592) |
17q gain | 217 (20%) | 863 |
1e-05 (2.35e-05) |
0.00011 (0.000215) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.615 (0.631) |
0.00017 (0.000319) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0124 (0.0164) |
1e-05 (2.35e-05) |
0.00111 (0.0018) |
0.00171 (0.00265) |
18q gain | 153 (14%) | 927 |
1e-05 (2.35e-05) |
6e-05 (0.000122) |
1e-05 (2.35e-05) |
3e-05 (6.36e-05) |
0.16 (0.179) |
0.00363 (0.00529) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00087 (0.00145) |
0.00175 (0.00271) |
19p gain | 190 (18%) | 890 |
0.00037 (0.000648) |
0.00512 (0.00726) |
1e-05 (2.35e-05) |
0.00203 (0.0031) |
0.0316 (0.0396) |
0.0239 (0.0306) |
1e-05 (2.35e-05) |
4e-05 (8.32e-05) |
1e-05 (2.35e-05) |
0.00012 (0.000233) |
0.0166 (0.0218) |
0.416 (0.437) |
20p gain | 416 (39%) | 664 |
4e-05 (8.32e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0107 (0.0144) |
0.454 (0.475) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.00469 (0.0067) |
2p loss | 182 (17%) | 898 |
0.00753 (0.0104) |
0.0121 (0.0161) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.00167 (0.0026) |
0.00084 (0.0014) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00032 (0.000567) |
2e-05 (4.34e-05) |
2e-05 (4.34e-05) |
0.0522 (0.0631) |
7p loss | 112 (10%) | 968 |
0.0198 (0.0257) |
0.00118 (0.00191) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.143 (0.161) |
0.0453 (0.0553) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00066 (0.00112) |
0.00029 (0.000523) |
8p loss | 399 (37%) | 681 |
1e-05 (2.35e-05) |
9e-05 (0.000178) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0906 (0.105) |
0.00032 (0.000567) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.00128 (0.00204) |
0.00078 (0.00131) |
10q loss | 229 (21%) | 851 |
0.00292 (0.00433) |
0.00911 (0.0124) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00167 (0.0026) |
0.162 (0.18) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
9e-05 (0.000178) |
0.00978 (0.0133) |
11q loss | 365 (34%) | 715 |
9e-05 (0.000178) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.956 (0.956) |
0.00248 (0.00373) |
0.00014 (0.000267) |
0.003 (0.00445) |
0.011 (0.0147) |
0.00085 (0.00142) |
0.0121 (0.0161) |
0.028 (0.0354) |
13q loss | 433 (40%) | 647 |
6e-05 (0.000122) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.163 (0.181) |
0.00045 (0.000778) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00044 (0.000764) |
19q loss | 161 (15%) | 919 |
0.00491 (0.00699) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.126 (0.142) |
0.0265 (0.0337) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0003 (0.000539) |
1e-05 (2.35e-05) |
20q loss | 55 (5%) | 1025 |
0.0125 (0.0166) |
0.00502 (0.00714) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0443 (0.0542) |
0.0957 (0.11) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00016 (0.000303) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0002 (0.000371) |
xq loss | 190 (18%) | 890 |
0.0887 (0.103) |
0.002 (0.00306) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0455 (0.0555) |
0.0153 (0.0202) |
0.00013 (0.00025) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.00068 (0.00115) |
0.0018 (0.00278) |
0.00167 (0.0026) |
7q gain | 266 (25%) | 814 |
0.0035 (0.00512) |
0.0268 (0.0341) |
1e-05 (2.35e-05) |
5e-05 (0.000103) |
0.0161 (0.0212) |
0.36 (0.381) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00367 (0.00533) |
2e-05 (4.34e-05) |
0.00569 (0.008) |
0.564 (0.581) |
8q gain | 529 (49%) | 551 |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.212 (0.232) |
0.444 (0.465) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
12p gain | 229 (21%) | 851 |
0.00071 (0.00119) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0624 (0.0741) |
0.0573 (0.0686) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00054 (0.000924) |
0.0015 (0.00238) |
0.02 (0.0259) |
19q gain | 223 (21%) | 857 |
0.00107 (0.00175) |
0.00376 (0.00545) |
1e-05 (2.35e-05) |
0.00267 (0.00398) |
0.0182 (0.0238) |
0.0813 (0.0951) |
2e-05 (4.34e-05) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.016 (0.021) |
0.0697 (0.0827) |
20q gain | 451 (42%) | 629 |
6e-05 (0.000122) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.119 (0.136) |
0.156 (0.175) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
2e-05 (4.34e-05) |
0.00019 (0.000354) |
xp gain | 151 (14%) | 929 |
7e-05 (0.000141) |
0.00883 (0.0121) |
1e-05 (2.35e-05) |
6e-05 (0.000122) |
0.866 (0.871) |
0.508 (0.526) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00012 (0.000233) |
0.00014 (0.000267) |
0.00045 (0.000778) |
xq gain | 136 (13%) | 944 |
0.0008 (0.00134) |
0.00229 (0.00347) |
1e-05 (2.35e-05) |
0.00013 (0.00025) |
0.333 (0.354) |
0.18 (0.2) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00046 (0.000793) |
0.0252 (0.0321) |
2q loss | 211 (20%) | 869 |
0.085 (0.0988) |
0.0282 (0.0357) |
1e-05 (2.35e-05) |
6e-05 (0.000122) |
0.00359 (0.00524) |
0.00572 (0.00802) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
0.0033 (0.00484) |
0.00158 (0.00248) |
0.00025 (0.000453) |
0.0752 (0.0886) |
17p loss | 579 (54%) | 501 |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0764 (0.09) |
0.12 (0.136) |
20p loss | 93 (9%) | 987 |
0.00321 (0.00473) |
0.00019 (0.000354) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0534 (0.0644) |
0.215 (0.235) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
8e-05 (0.00016) |
14q gain | 143 (13%) | 937 |
0.00113 (0.00183) |
0.0145 (0.0191) |
1e-05 (2.35e-05) |
0.00128 (0.00204) |
0.274 (0.295) |
0.356 (0.378) |
8e-05 (0.00016) |
0.00027 (0.000488) |
0.00024 (0.000436) |
1e-05 (2.35e-05) |
0.00155 (0.00244) |
0.32 (0.342) |
1p loss | 243 (22%) | 837 |
0.00121 (0.00195) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.673 (0.687) |
0.517 (0.534) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0057 (0.008) |
2e-05 (4.34e-05) |
0.00187 (0.00288) |
0.696 (0.709) |
3q loss | 103 (10%) | 977 |
0.00122 (0.00196) |
0.00017 (0.000319) |
1e-05 (2.35e-05) |
0.0011 (0.00179) |
0.185 (0.204) |
0.0303 (0.0382) |
0.00035 (0.000616) |
0.00021 (0.000386) |
0.0003 (0.000539) |
0.00016 (0.000303) |
0.0829 (0.0965) |
0.0771 (0.0906) |
7q loss | 120 (11%) | 960 |
0.0365 (0.0453) |
0.0016 (0.00251) |
1e-05 (2.35e-05) |
0.0704 (0.0833) |
0.229 (0.249) |
0.469 (0.489) |
0.0006 (0.00102) |
0.00046 (0.000793) |
9e-05 (0.000178) |
5e-05 (0.000103) |
0.0259 (0.033) |
0.00414 (0.00596) |
16p loss | 173 (16%) | 907 |
0.221 (0.241) |
0.096 (0.11) |
0.00032 (0.000567) |
0.00037 (0.000648) |
0.00993 (0.0135) |
0.116 (0.132) |
0.00056 (0.000953) |
0.00165 (0.00258) |
0.00148 (0.00235) |
0.00051 (0.000874) |
0.00019 (0.000354) |
0.0302 (0.0381) |
18q loss | 321 (30%) | 759 |
0.00021 (0.000386) |
0.00022 (0.000403) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.0104 (0.014) |
0.187 (0.207) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
3e-05 (6.36e-05) |
1e-05 (2.35e-05) |
0.206 (0.227) |
0.61 (0.627) |
22q loss | 482 (45%) | 598 |
0.0539 (0.065) |
0.0052 (0.00736) |
1e-05 (2.35e-05) |
0.00011 (0.000215) |
0.109 (0.125) |
0.00253 (0.00379) |
0.0001 (0.000196) |
4e-05 (8.32e-05) |
0.00319 (0.00471) |
0.00056 (0.000953) |
0.00376 (0.00545) |
0.149 (0.168) |
3p gain | 135 (12%) | 945 |
0.0286 (0.0361) |
0.044 (0.0539) |
1e-05 (2.35e-05) |
0.00017 (0.000319) |
0.495 (0.514) |
0.0581 (0.0692) |
2e-05 (4.34e-05) |
1e-05 (2.35e-05) |
0.00031 (0.000555) |
2e-05 (4.34e-05) |
0.0782 (0.0918) |
0.208 (0.228) |
11p gain | 138 (13%) | 942 |
0.786 (0.796) |
0.0827 (0.0965) |
1e-05 (2.35e-05) |
0.00952 (0.013) |
0.694 (0.708) |
0.774 (0.784) |
0.00069 (0.00116) |
0.0113 (0.0151) |
8e-05 (0.00016) |
3e-05 (6.36e-05) |
0.00326 (0.00479) |
0.00017 (0.000319) |
11q gain | 94 (9%) | 986 |
0.18 (0.199) |
0.0466 (0.0567) |
1e-05 (2.35e-05) |
0.00218 (0.00332) |
0.808 (0.817) |
0.641 (0.656) |
4e-05 (8.32e-05) |
0.00014 (0.000267) |
7e-05 (0.000141) |
0.00023 (0.000419) |
0.0574 (0.0686) |
0.0423 (0.0521) |
12q gain | 191 (18%) | 889 |
0.00109 (0.00178) |
0.00146 (0.00232) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.247 (0.267) |
0.183 (0.203) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.00023 (0.000419) |
0.0576 (0.0688) |
0.00104 (0.00171) |
0.709 (0.722) |
6q loss | 276 (26%) | 804 |
0.0002 (0.000371) |
0.0135 (0.0179) |
1e-05 (2.35e-05) |
3e-05 (6.36e-05) |
0.483 (0.503) |
0.0793 (0.0931) |
0.00101 (0.00166) |
0.00088 (0.00146) |
0.369 (0.389) |
0.00056 (0.000953) |
0.00997 (0.0135) |
0.363 (0.383) |
18p loss | 320 (30%) | 760 |
0.00021 (0.000386) |
0.00044 (0.000764) |
1e-05 (2.35e-05) |
1e-05 (2.35e-05) |
0.145 (0.163) |
0.182 (0.201) |
0.00029 (0.000523) |
1e-05 (2.35e-05) |
8e-05 (0.00016) |
1e-05 (2.35e-05) |
0.391 (0.412) |
0.941 (0.942) |
21q loss | 180 (17%) | 900 |
0.0337 (0.042) |
0.149 (0.168) |
1e-05 (2.35e-05) |
0.00261 (0.0039) |
0.498 (0.516) |
0.453 (0.475) |
0.0173 (0.0226) |
0.00383 (0.00554) |
0.011 (0.0147) |
0.00632 (0.00881) |
0.0192 (0.0249) |
0.0507 (0.0613) |
4p gain | 76 (7%) | 1004 |
0.00039 (0.00068) |
0.00111 (0.0018) |
1e-05 (2.35e-05) |
0.00036 (0.000633) |
0.861 (0.867) |
0.11 (0.125) |
0.043 (0.0527) |
0.012 (0.0159) |
0.43 (0.451) |
0.00021 (0.000386) |
0.309 (0.331) |
0.0944 (0.109) |
4q gain | 73 (7%) | 1007 |
1e-05 (2.35e-05) |
0.00024 (0.000436) |
1e-05 (2.35e-05) |
0.00621 (0.00868) |
0.498 (0.516) |
0.0591 (0.0704) |
0.037 (0.0459) |
0.0569 (0.0684) |
0.593 (0.61) |
0.00063 (0.00107) |
0.106 (0.122) |
0.0205 (0.0265) |
5p gain | 316 (29%) | 764 |
0.0218 (0.0281) |
0.0426 (0.0523) |
1e-05 (2.35e-05) |
0.019 (0.0247) |
0.9 (0.903) |
0.21 (0.231) |
0.0958 (0.11) |
0.0445 (0.0544) |
0.00443 (0.00634) |
0.0327 (0.0409) |
0.245 (0.265) |
0.311 (0.332) |
7p gain | 309 (29%) | 771 |
0.00704 (0.00977) |
0.129 (0.146) |
1e-05 (2.35e-05) |
0.00023 (0.000419) |
0.158 (0.176) |
0.823 (0.83) |
0.00093 (0.00154) |
5e-05 (0.000103) |
0.0244 (0.0313) |
0.00137 (0.00218) |
0.0749 (0.0884) |
0.725 (0.737) |
13q gain | 92 (9%) | 988 |
0.218 (0.239) |
0.283 (0.304) |
4e-05 (8.32e-05) |
0.00443 (0.00634) |
0.0903 (0.105) |
0.307 (0.328) |
0.00249 (0.00374) |
0.00044 (0.000764) |
0.00366 (0.00533) |
0.00852 (0.0117) |
0.0827 (0.0965) |
0.0262 (0.0334) |
15q gain | 87 (8%) | 993 |
0.0423 (0.0521) |
0.279 (0.3) |
0.00184 (0.00284) |
0.0354 (0.0441) |
0.243 (0.263) |
0.156 (0.175) |
0.00507 (0.0072) |
0.0222 (0.0286) |
0.00807 (0.0111) |
0.0195 (0.0253) |
0.504 (0.522) |
0.133 (0.15) |
17p gain | 107 (10%) | 973 |
0.0297 (0.0375) |
0.329 (0.35) |
1e-05 (2.35e-05) |
0.0244 (0.0312) |
0.46 (0.48) |
0.0814 (0.0951) |
0.0393 (0.0487) |
0.0166 (0.0217) |
0.355 (0.376) |
0.00428 (0.00614) |
0.48 (0.5) |
0.025 (0.0319) |
6p loss | 187 (17%) | 893 |
0.0235 (0.0303) |
0.163 (0.181) |
1e-05 (2.35e-05) |
0.00759 (0.0105) |
0.667 (0.683) |
0.0612 (0.0728) |
0.00115 (0.00186) |
0.0104 (0.014) |
0.268 (0.289) |
0.0339 (0.0422) |
0.00703 (0.00977) |
0.525 (0.542) |
1q gain | 706 (65%) | 374 |
0.0011 (0.00179) |
0.00541 (0.00763) |
1e-05 (2.35e-05) |
0.00022 (0.000403) |
0.81 (0.819) |
0.355 (0.376) |
0.912 (0.913) |
0.0035 (0.00512) |
0.133 (0.15) |
0.00384 (0.00554) |
0.121 (0.138) |
0.215 (0.235) |
8p gain | 290 (27%) | 790 |
0.181 (0.2) |
0.109 (0.125) |
1e-05 (2.35e-05) |
0.00244 (0.00368) |
0.734 (0.745) |
0.0682 (0.081) |
0.00846 (0.0116) |
0.00124 (0.00199) |
0.0198 (0.0257) |
0.302 (0.324) |
0.00533 (0.00754) |
0.112 (0.128) |
10p loss | 173 (16%) | 907 |
0.28 (0.301) |
0.235 (0.255) |
1e-05 (2.35e-05) |
4e-05 (8.32e-05) |
0.592 (0.609) |
0.888 (0.892) |
1e-05 (2.35e-05) |
4e-05 (8.32e-05) |
0.00189 (0.00291) |
0.00094 (0.00155) |
0.202 (0.222) |
0.612 (0.627) |
9q gain | 119 (11%) | 961 |
0.276 (0.297) |
0.00121 (0.00195) |
1e-05 (2.35e-05) |
0.156 (0.175) |
0.764 (0.775) |
0.185 (0.204) |
0.00191 (0.00293) |
0.0304 (0.0382) |
0.0501 (0.0608) |
0.0735 (0.087) |
0.0957 (0.11) |
0.0459 (0.056) |
16q gain | 142 (13%) | 938 |
0.486 (0.505) |
0.403 (0.424) |
0.0104 (0.014) |
0.0313 (0.0393) |
0.717 (0.729) |
0.414 (0.435) |
0.0572 (0.0686) |
0.00743 (0.0103) |
0.00176 (0.00272) |
0.00151 (0.00238) |
0.13 (0.147) |
0.247 (0.267) |
1q loss | 52 (5%) | 1028 |
0.0745 (0.088) |
0.012 (0.016) |
6e-05 (0.000122) |
0.00704 (0.00977) |
0.242 (0.263) |
0.361 (0.382) |
0.0141 (0.0186) |
0.0529 (0.0638) |
0.0545 (0.0656) |
0.0269 (0.0341) |
0.0957 (0.11) |
0.477 (0.497) |
8q loss | 93 (9%) | 987 |
0.0506 (0.0613) |
0.106 (0.121) |
0.00762 (0.0105) |
0.0108 (0.0145) |
0.882 (0.887) |
0.276 (0.297) |
0.0103 (0.0138) |
0.08 (0.0937) |
0.254 (0.274) |
0.837 (0.843) |
0.219 (0.239) |
0.387 (0.408) |
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S1. Gene #1: '1p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
1P GAIN MUTATED | 2 | 4 | 16 | 39 | 6 | 19 | 6 | 5 |
1P GAIN WILD-TYPE | 19 | 32 | 103 | 57 | 103 | 53 | 14 | 35 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D1V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S2. Gene #1: '1p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
1P GAIN MUTATED | 13 | 17 | 27 | 35 | 5 |
1P GAIN WILD-TYPE | 88 | 135 | 87 | 53 | 53 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D1V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S3. Gene #1: '1p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
1P GAIN MUTATED | 39 | 47 | 10 | 100 | 10 |
1P GAIN WILD-TYPE | 236 | 360 | 88 | 157 | 33 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D1V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S4. Gene #1: '1p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
1P GAIN MUTATED | 23 | 14 | 22 | 31 | 54 | 6 |
1P GAIN WILD-TYPE | 121 | 85 | 191 | 92 | 81 | 53 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D1V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S5. Gene #1: '1p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
1P GAIN MUTATED | 50 | 14 | 18 |
1P GAIN WILD-TYPE | 101 | 109 | 107 |
Figure S5. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D1V5.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.00055
Table S6. Gene #1: '1p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
1P GAIN MUTATED | 5 | 5 | 30 | 6 | 26 | 10 |
1P GAIN WILD-TYPE | 59 | 41 | 60 | 46 | 90 | 21 |
Figure S6. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D1V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S7. Gene #1: '1p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
1P GAIN MUTATED | 63 | 114 | 28 |
1P GAIN WILD-TYPE | 496 | 190 | 184 |
Figure S7. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D1V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S8. Gene #1: '1p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
1P GAIN MUTATED | 30 | 33 | 10 | 37 | 77 | 18 |
1P GAIN WILD-TYPE | 259 | 130 | 80 | 253 | 106 | 42 |
Figure S8. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S9. Gene #1: '1p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
1P GAIN MUTATED | 100 | 32 | 30 | 41 |
1P GAIN WILD-TYPE | 205 | 180 | 239 | 234 |
Figure S9. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D1V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S10. Gene #1: '1p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
1P GAIN MUTATED | 51 | 47 | 24 | 14 | 10 | 57 |
1P GAIN WILD-TYPE | 243 | 105 | 221 | 126 | 86 | 77 |
Figure S10. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D1V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S11. Gene #1: '1p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
1P GAIN MUTATED | 25 | 60 | 10 | 17 | 17 |
1P GAIN WILD-TYPE | 155 | 79 | 89 | 94 | 116 |
Figure S11. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D1V11.png)
P value = 0.00018 (Fisher's exact test), Q value = 0.00034
Table S12. Gene #1: '1p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
1P GAIN MUTATED | 80 | 37 | 12 |
1P GAIN WILD-TYPE | 225 | 210 | 98 |
Figure S12. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V12.png)
P value = 0.0011 (Fisher's exact test), Q value = 0.0018
Table S13. Gene #2: '1q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
1Q GAIN MUTATED | 14 | 20 | 60 | 66 | 86 | 50 | 12 | 28 |
1Q GAIN WILD-TYPE | 7 | 16 | 59 | 30 | 23 | 22 | 8 | 12 |
Figure S13. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D2V1.png)
P value = 0.00541 (Fisher's exact test), Q value = 0.0076
Table S14. Gene #2: '1q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
1Q GAIN MUTATED | 50 | 102 | 82 | 60 | 42 |
1Q GAIN WILD-TYPE | 51 | 50 | 32 | 28 | 16 |
Figure S14. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D2V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S15. Gene #2: '1q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
1Q GAIN MUTATED | 177 | 241 | 94 | 166 | 28 |
1Q GAIN WILD-TYPE | 98 | 166 | 4 | 91 | 15 |
Figure S15. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D2V3.png)
P value = 0.00022 (Fisher's exact test), Q value = 4e-04
Table S16. Gene #2: '1q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
1Q GAIN MUTATED | 81 | 72 | 160 | 71 | 90 | 31 |
1Q GAIN WILD-TYPE | 63 | 27 | 53 | 52 | 45 | 28 |
Figure S16. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D2V4.png)
P value = 0.0035 (Fisher's exact test), Q value = 0.0051
Table S17. Gene #2: '1q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
1Q GAIN MUTATED | 166 | 122 | 57 | 201 | 122 | 36 |
1Q GAIN WILD-TYPE | 123 | 41 | 33 | 89 | 61 | 24 |
Figure S17. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 0.00384 (Fisher's exact test), Q value = 0.0055
Table S18. Gene #2: '1q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
1Q GAIN MUTATED | 194 | 99 | 158 | 105 | 47 | 91 |
1Q GAIN WILD-TYPE | 100 | 53 | 87 | 35 | 49 | 43 |
Figure S18. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D2V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S19. Gene #3: '2p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
2P GAIN MUTATED | 1 | 1 | 6 | 31 | 1 | 20 | 1 | 0 |
2P GAIN WILD-TYPE | 20 | 35 | 113 | 65 | 108 | 52 | 19 | 40 |
Figure S19. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D3V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S20. Gene #3: '2p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
2P GAIN MUTATED | 5 | 1 | 27 | 27 | 1 |
2P GAIN WILD-TYPE | 96 | 151 | 87 | 61 | 57 |
Figure S20. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D3V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S21. Gene #3: '2p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
2P GAIN MUTATED | 24 | 15 | 8 | 71 | 5 |
2P GAIN WILD-TYPE | 251 | 392 | 90 | 186 | 38 |
Figure S21. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D3V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S22. Gene #3: '2p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
2P GAIN MUTATED | 19 | 7 | 2 | 15 | 39 | 3 |
2P GAIN WILD-TYPE | 125 | 92 | 211 | 108 | 96 | 56 |
Figure S22. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D3V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S23. Gene #3: '2p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
2P GAIN MUTATED | 40 | 9 | 2 |
2P GAIN WILD-TYPE | 111 | 114 | 123 |
Figure S23. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D3V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S24. Gene #3: '2p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
2P GAIN MUTATED | 1 | 1 | 32 | 4 | 8 | 5 |
2P GAIN WILD-TYPE | 63 | 45 | 58 | 48 | 108 | 26 |
Figure S24. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D3V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S25. Gene #3: '2p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
2P GAIN MUTATED | 28 | 94 | 1 |
2P GAIN WILD-TYPE | 531 | 210 | 211 |
Figure S25. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D3V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S26. Gene #3: '2p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
2P GAIN MUTATED | 9 | 26 | 1 | 7 | 57 | 23 |
2P GAIN WILD-TYPE | 280 | 137 | 89 | 283 | 126 | 37 |
Figure S26. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S27. Gene #3: '2p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
2P GAIN MUTATED | 87 | 4 | 8 | 18 |
2P GAIN WILD-TYPE | 218 | 208 | 261 | 257 |
Figure S27. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D3V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S28. Gene #3: '2p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
2P GAIN MUTATED | 31 | 38 | 6 | 2 | 0 | 40 |
2P GAIN WILD-TYPE | 263 | 114 | 239 | 138 | 96 | 94 |
Figure S28. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D3V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S29. Gene #3: '2p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
2P GAIN MUTATED | 11 | 47 | 4 | 6 | 10 |
2P GAIN WILD-TYPE | 169 | 92 | 95 | 105 | 123 |
Figure S29. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D3V11.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00027
Table S30. Gene #3: '2p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
2P GAIN MUTATED | 53 | 20 | 5 |
2P GAIN WILD-TYPE | 252 | 227 | 105 |
Figure S30. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D3V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S31. Gene #4: '2q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
2Q GAIN MUTATED | 1 | 1 | 5 | 18 | 1 | 13 | 0 | 0 |
2Q GAIN WILD-TYPE | 20 | 35 | 114 | 78 | 108 | 59 | 20 | 40 |
Figure S31. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D4V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S32. Gene #4: '2q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
2Q GAIN MUTATED | 4 | 1 | 17 | 16 | 1 |
2Q GAIN WILD-TYPE | 97 | 151 | 97 | 72 | 57 |
Figure S32. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D4V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S33. Gene #4: '2q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
2Q GAIN MUTATED | 12 | 11 | 7 | 42 | 1 |
2Q GAIN WILD-TYPE | 263 | 396 | 91 | 215 | 42 |
Figure S33. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D4V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S34. Gene #4: '2q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
2Q GAIN MUTATED | 8 | 6 | 2 | 6 | 21 | 2 |
2Q GAIN WILD-TYPE | 136 | 93 | 211 | 117 | 114 | 57 |
Figure S34. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D4V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S35. Gene #4: '2q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
2Q GAIN MUTATED | 26 | 4 | 2 |
2Q GAIN WILD-TYPE | 125 | 119 | 123 |
Figure S35. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D4V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S36. Gene #4: '2q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
2Q GAIN MUTATED | 1 | 1 | 19 | 2 | 5 | 4 |
2Q GAIN WILD-TYPE | 63 | 45 | 71 | 50 | 111 | 27 |
Figure S36. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D4V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S37. Gene #4: '2q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
2Q GAIN MUTATED | 16 | 56 | 1 |
2Q GAIN WILD-TYPE | 543 | 248 | 211 |
Figure S37. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D4V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S38. Gene #4: '2q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
2Q GAIN MUTATED | 5 | 19 | 1 | 3 | 33 | 12 |
2Q GAIN WILD-TYPE | 284 | 144 | 89 | 287 | 150 | 48 |
Figure S38. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D4V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S39. Gene #4: '2q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
2Q GAIN MUTATED | 46 | 4 | 5 | 13 |
2Q GAIN WILD-TYPE | 259 | 208 | 264 | 262 |
Figure S39. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D4V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S40. Gene #4: '2q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
2Q GAIN MUTATED | 19 | 26 | 4 | 2 | 0 | 17 |
2Q GAIN WILD-TYPE | 275 | 126 | 241 | 138 | 96 | 117 |
Figure S40. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D4V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S41. Gene #4: '2q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
2Q GAIN MUTATED | 6 | 29 | 2 | 6 | 6 |
2Q GAIN WILD-TYPE | 174 | 110 | 97 | 105 | 127 |
Figure S41. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D4V11.png)
P value = 0.0286 (Fisher's exact test), Q value = 0.036
Table S42. Gene #5: '3p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
3P GAIN MUTATED | 4 | 6 | 23 | 18 | 16 | 12 | 6 | 0 |
3P GAIN WILD-TYPE | 17 | 30 | 96 | 78 | 93 | 60 | 14 | 40 |
Figure S42. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D5V1.png)
P value = 0.044 (Fisher's exact test), Q value = 0.054
Table S43. Gene #5: '3p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
3P GAIN MUTATED | 18 | 14 | 23 | 18 | 12 |
3P GAIN WILD-TYPE | 83 | 138 | 91 | 70 | 46 |
Figure S43. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D5V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S44. Gene #5: '3p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
3P GAIN MUTATED | 49 | 13 | 19 | 44 | 10 |
3P GAIN WILD-TYPE | 226 | 394 | 79 | 213 | 33 |
Figure S44. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D5V3.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00032
Table S45. Gene #5: '3p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
3P GAIN MUTATED | 15 | 10 | 17 | 7 | 29 | 1 |
3P GAIN WILD-TYPE | 129 | 89 | 196 | 116 | 106 | 58 |
Figure S45. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D5V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S46. Gene #5: '3p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
3P GAIN MUTATED | 78 | 50 | 7 |
3P GAIN WILD-TYPE | 481 | 254 | 205 |
Figure S46. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D5V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S47. Gene #5: '3p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
3P GAIN MUTATED | 47 | 25 | 2 | 18 | 38 | 5 |
3P GAIN WILD-TYPE | 242 | 138 | 88 | 272 | 145 | 55 |
Figure S47. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.00055
Table S48. Gene #5: '3p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
3P GAIN MUTATED | 55 | 13 | 27 | 36 |
3P GAIN WILD-TYPE | 250 | 199 | 242 | 239 |
Figure S48. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D5V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S49. Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
3P GAIN MUTATED | 38 | 24 | 11 | 17 | 12 | 29 |
3P GAIN WILD-TYPE | 256 | 128 | 234 | 123 | 84 | 105 |
Figure S49. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D5V10.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00057
Table S50. Gene #6: '3q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
3Q GAIN MUTATED | 2 | 7 | 29 | 32 | 16 | 17 | 7 | 1 |
3Q GAIN WILD-TYPE | 19 | 29 | 90 | 64 | 93 | 55 | 13 | 39 |
Figure S50. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D6V1.png)
P value = 0.00016 (Fisher's exact test), Q value = 3e-04
Table S51. Gene #6: '3q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
3Q GAIN MUTATED | 21 | 16 | 33 | 29 | 12 |
3Q GAIN WILD-TYPE | 80 | 136 | 81 | 59 | 46 |
Figure S51. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D6V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S52. Gene #6: '3q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
3Q GAIN MUTATED | 62 | 23 | 24 | 92 | 11 |
3Q GAIN WILD-TYPE | 213 | 384 | 74 | 165 | 32 |
Figure S52. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D6V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S53. Gene #6: '3q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
3Q GAIN MUTATED | 26 | 16 | 19 | 14 | 56 | 4 |
3Q GAIN WILD-TYPE | 118 | 83 | 194 | 109 | 79 | 55 |
Figure S53. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D6V4.png)
P value = 0.023 (Fisher's exact test), Q value = 0.03
Table S54. Gene #6: '3q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
3Q GAIN MUTATED | 45 | 20 | 25 |
3Q GAIN WILD-TYPE | 106 | 103 | 100 |
Figure S54. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D6V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S55. Gene #6: '3q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
3Q GAIN MUTATED | 100 | 101 | 11 |
3Q GAIN WILD-TYPE | 459 | 203 | 201 |
Figure S55. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D6V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S56. Gene #6: '3q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
3Q GAIN MUTATED | 53 | 38 | 3 | 30 | 75 | 13 |
3Q GAIN WILD-TYPE | 236 | 125 | 87 | 260 | 108 | 47 |
Figure S56. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S57. Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
3Q GAIN MUTATED | 108 | 19 | 34 | 47 |
3Q GAIN WILD-TYPE | 197 | 193 | 235 | 228 |
Figure S57. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D6V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S58. Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
3Q GAIN MUTATED | 54 | 41 | 19 | 24 | 13 | 57 |
3Q GAIN WILD-TYPE | 240 | 111 | 226 | 116 | 83 | 77 |
Figure S58. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D6V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S59. Gene #6: '3q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
3Q GAIN MUTATED | 31 | 55 | 11 | 10 | 17 |
3Q GAIN WILD-TYPE | 149 | 84 | 88 | 101 | 116 |
Figure S59. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D6V11.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00025
Table S60. Gene #6: '3q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
3Q GAIN MUTATED | 78 | 33 | 13 |
3Q GAIN WILD-TYPE | 227 | 214 | 97 |
Figure S60. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V12.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.00068
Table S61. Gene #7: '4p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
4P GAIN MUTATED | 1 | 2 | 22 | 3 | 3 | 4 | 0 | 2 |
4P GAIN WILD-TYPE | 20 | 34 | 97 | 93 | 106 | 68 | 20 | 38 |
Figure S61. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D7V1.png)
P value = 0.00111 (Fisher's exact test), Q value = 0.0018
Table S62. Gene #7: '4p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
4P GAIN MUTATED | 18 | 7 | 7 | 3 | 2 |
4P GAIN WILD-TYPE | 83 | 145 | 107 | 85 | 56 |
Figure S62. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D7V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S63. Gene #7: '4p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
4P GAIN MUTATED | 47 | 7 | 3 | 15 | 4 |
4P GAIN WILD-TYPE | 228 | 400 | 95 | 242 | 39 |
Figure S63. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D7V3.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.00063
Table S64. Gene #7: '4p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
4P GAIN MUTATED | 23 | 8 | 7 | 4 | 7 | 4 |
4P GAIN WILD-TYPE | 121 | 91 | 206 | 119 | 128 | 55 |
Figure S64. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D7V4.png)
P value = 0.043 (Fisher's exact test), Q value = 0.053
Table S65. Gene #7: '4p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
4P GAIN MUTATED | 49 | 19 | 8 |
4P GAIN WILD-TYPE | 510 | 285 | 204 |
Figure S65. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D7V7.png)
P value = 0.012 (Fisher's exact test), Q value = 0.016
Table S66. Gene #7: '4p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
4P GAIN MUTATED | 30 | 17 | 2 | 17 | 7 | 3 |
4P GAIN WILD-TYPE | 259 | 146 | 88 | 273 | 176 | 57 |
Figure S66. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D7V8.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00039
Table S67. Gene #7: '4p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
4P GAIN MUTATED | 30 | 16 | 13 | 1 | 10 | 5 |
4P GAIN WILD-TYPE | 264 | 136 | 232 | 139 | 86 | 129 |
Figure S67. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D7V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S68. Gene #8: '4q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
4Q GAIN MUTATED | 1 | 2 | 23 | 2 | 3 | 2 | 0 | 2 |
4Q GAIN WILD-TYPE | 20 | 34 | 96 | 94 | 106 | 70 | 20 | 38 |
Figure S68. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D8V1.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.00044
Table S69. Gene #8: '4q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
4Q GAIN MUTATED | 18 | 8 | 6 | 2 | 1 |
4Q GAIN WILD-TYPE | 83 | 144 | 108 | 86 | 57 |
Figure S69. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D8V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S70. Gene #8: '4q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
4Q GAIN MUTATED | 45 | 7 | 2 | 14 | 5 |
4Q GAIN WILD-TYPE | 230 | 400 | 96 | 243 | 38 |
Figure S70. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D8V3.png)
P value = 0.00621 (Fisher's exact test), Q value = 0.0087
Table S71. Gene #8: '4q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
4Q GAIN MUTATED | 20 | 5 | 8 | 4 | 8 | 4 |
4Q GAIN WILD-TYPE | 124 | 94 | 205 | 119 | 127 | 55 |
Figure S71. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D8V4.png)
P value = 0.037 (Fisher's exact test), Q value = 0.046
Table S72. Gene #8: '4q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
4Q GAIN MUTATED | 48 | 17 | 8 |
4Q GAIN WILD-TYPE | 511 | 287 | 204 |
Figure S72. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D8V7.png)
P value = 0.00063 (Fisher's exact test), Q value = 0.0011
Table S73. Gene #8: '4q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
4Q GAIN MUTATED | 33 | 10 | 12 | 1 | 8 | 8 |
4Q GAIN WILD-TYPE | 261 | 142 | 233 | 139 | 88 | 126 |
Figure S73. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D8V10.png)
P value = 0.0205 (Fisher's exact test), Q value = 0.026
Table S74. Gene #8: '4q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
4Q GAIN MUTATED | 31 | 11 | 5 |
4Q GAIN WILD-TYPE | 274 | 236 | 105 |
Figure S74. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D8V12.png)
P value = 0.0218 (Fisher's exact test), Q value = 0.028
Table S75. Gene #9: '5p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
5P GAIN MUTATED | 5 | 14 | 33 | 24 | 31 | 29 | 12 | 8 |
5P GAIN WILD-TYPE | 16 | 22 | 86 | 72 | 78 | 43 | 8 | 32 |
Figure S75. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D9V1.png)
P value = 0.0426 (Fisher's exact test), Q value = 0.052
Table S76. Gene #9: '5p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
5P GAIN MUTATED | 25 | 44 | 48 | 22 | 17 |
5P GAIN WILD-TYPE | 76 | 108 | 66 | 66 | 41 |
Figure S76. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D9V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S77. Gene #9: '5p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
5P GAIN MUTATED | 117 | 61 | 50 | 75 | 13 |
5P GAIN WILD-TYPE | 158 | 346 | 48 | 182 | 30 |
Figure S77. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D9V3.png)
P value = 0.019 (Fisher's exact test), Q value = 0.025
Table S78. Gene #9: '5p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
5P GAIN MUTATED | 46 | 36 | 58 | 23 | 45 | 12 |
5P GAIN WILD-TYPE | 98 | 63 | 155 | 100 | 90 | 47 |
Figure S78. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D9V4.png)
P value = 0.0445 (Fisher's exact test), Q value = 0.054
Table S79. Gene #9: '5p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
5P GAIN MUTATED | 87 | 60 | 20 | 74 | 50 | 23 |
5P GAIN WILD-TYPE | 202 | 103 | 70 | 216 | 133 | 37 |
Figure S79. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 0.00443 (Fisher's exact test), Q value = 0.0063
Table S80. Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
5P GAIN MUTATED | 92 | 43 | 79 | 96 |
5P GAIN WILD-TYPE | 213 | 169 | 190 | 179 |
Figure S80. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D9V9.png)
P value = 0.0327 (Fisher's exact test), Q value = 0.041
Table S81. Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
5P GAIN MUTATED | 91 | 51 | 53 | 50 | 29 | 36 |
5P GAIN WILD-TYPE | 203 | 101 | 192 | 90 | 67 | 98 |
Figure S81. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D9V10.png)
P value = 0.0113 (Fisher's exact test), Q value = 0.015
Table S82. Gene #10: '5q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
5Q GAIN MUTATED | 5 | 9 | 24 | 8 | 29 | 17 | 6 | 4 |
5Q GAIN WILD-TYPE | 16 | 27 | 95 | 88 | 80 | 55 | 14 | 36 |
Figure S82. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D10V1.png)
P value = 0.00628 (Fisher's exact test), Q value = 0.0088
Table S83. Gene #10: '5q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
5Q GAIN MUTATED | 17 | 33 | 29 | 7 | 16 |
5Q GAIN WILD-TYPE | 84 | 119 | 85 | 81 | 42 |
Figure S83. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D10V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S84. Gene #10: '5q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
5Q GAIN MUTATED | 87 | 49 | 48 | 18 | 10 |
5Q GAIN WILD-TYPE | 188 | 358 | 50 | 239 | 33 |
Figure S84. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D10V3.png)
P value = 0.00222 (Fisher's exact test), Q value = 0.0034
Table S85. Gene #10: '5q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
5Q GAIN MUTATED | 36 | 25 | 50 | 13 | 17 | 9 |
5Q GAIN WILD-TYPE | 108 | 74 | 163 | 110 | 118 | 50 |
Figure S85. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D10V4.png)
P value = 0.00233 (Fisher's exact test), Q value = 0.0035
Table S86. Gene #10: '5q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
5Q GAIN MUTATED | 18 | 30 | 34 |
5Q GAIN WILD-TYPE | 133 | 93 | 91 |
Figure S86. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D10V5.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00039
Table S87. Gene #10: '5q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
5Q GAIN MUTATED | 22 | 12 | 5 | 11 | 25 | 7 |
5Q GAIN WILD-TYPE | 42 | 34 | 85 | 41 | 91 | 24 |
Figure S87. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D10V6.png)
P value = 0.00474 (Fisher's exact test), Q value = 0.0068
Table S88. Gene #10: '5q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
5Q GAIN MUTATED | 126 | 41 | 43 |
5Q GAIN WILD-TYPE | 433 | 263 | 169 |
Figure S88. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D10V7.png)
P value = 0.00049 (Fisher's exact test), Q value = 0.00084
Table S89. Gene #10: '5q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
5Q GAIN MUTATED | 71 | 39 | 16 | 59 | 17 | 8 |
5Q GAIN WILD-TYPE | 218 | 124 | 74 | 231 | 166 | 52 |
Figure S89. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D10V8.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S90. Gene #10: '5q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
5Q GAIN MUTATED | 36 | 38 | 64 | 71 |
5Q GAIN WILD-TYPE | 269 | 174 | 205 | 204 |
Figure S90. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D10V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S91. Gene #10: '5q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
5Q GAIN MUTATED | 65 | 24 | 45 | 44 | 22 | 9 |
5Q GAIN WILD-TYPE | 229 | 128 | 200 | 96 | 74 | 125 |
Figure S91. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D10V10.png)
P value = 0.00035 (Fisher's exact test), Q value = 0.00062
Table S92. Gene #10: '5q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
5Q GAIN MUTATED | 51 | 15 | 22 | 26 | 18 |
5Q GAIN WILD-TYPE | 129 | 124 | 77 | 85 | 115 |
Figure S92. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D10V11.png)
P value = 0.0479 (Fisher's exact test), Q value = 0.058
Table S93. Gene #10: '5q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
5Q GAIN MUTATED | 52 | 49 | 31 |
5Q GAIN WILD-TYPE | 253 | 198 | 79 |
Figure S93. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D10V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S94. Gene #11: '6p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
6P GAIN MUTATED | 2 | 2 | 18 | 36 | 13 | 19 | 7 | 2 |
6P GAIN WILD-TYPE | 19 | 34 | 101 | 60 | 96 | 53 | 13 | 38 |
Figure S94. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D11V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S95. Gene #11: '6p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
6P GAIN MUTATED | 15 | 13 | 34 | 31 | 6 |
6P GAIN WILD-TYPE | 86 | 139 | 80 | 57 | 52 |
Figure S95. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D11V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S96. Gene #11: '6p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
6P GAIN MUTATED | 45 | 21 | 19 | 113 | 11 |
6P GAIN WILD-TYPE | 230 | 386 | 79 | 144 | 32 |
Figure S96. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D11V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S97. Gene #11: '6p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
6P GAIN MUTATED | 30 | 20 | 18 | 17 | 58 | 3 |
6P GAIN WILD-TYPE | 114 | 79 | 195 | 106 | 77 | 56 |
Figure S97. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D11V4.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00057
Table S98. Gene #11: '6p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
6P GAIN MUTATED | 46 | 17 | 16 |
6P GAIN WILD-TYPE | 105 | 106 | 109 |
Figure S98. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D11V5.png)
P value = 0.00322 (Fisher's exact test), Q value = 0.0047
Table S99. Gene #11: '6p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
6P GAIN MUTATED | 12 | 5 | 32 | 9 | 17 | 4 |
6P GAIN WILD-TYPE | 52 | 41 | 58 | 43 | 99 | 27 |
Figure S99. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D11V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S100. Gene #11: '6p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
6P GAIN MUTATED | 84 | 110 | 14 |
6P GAIN WILD-TYPE | 475 | 194 | 198 |
Figure S100. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D11V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S101. Gene #11: '6p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
6P GAIN MUTATED | 36 | 50 | 3 | 27 | 80 | 12 |
6P GAIN WILD-TYPE | 253 | 113 | 87 | 263 | 103 | 48 |
Figure S101. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S102. Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
6P GAIN MUTATED | 110 | 19 | 36 | 36 |
6P GAIN WILD-TYPE | 195 | 193 | 233 | 239 |
Figure S102. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D11V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S103. Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
6P GAIN MUTATED | 53 | 46 | 19 | 12 | 12 | 59 |
6P GAIN WILD-TYPE | 241 | 106 | 226 | 128 | 84 | 75 |
Figure S103. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D11V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S104. Gene #11: '6p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
6P GAIN MUTATED | 22 | 61 | 13 | 8 | 17 |
6P GAIN WILD-TYPE | 158 | 78 | 86 | 103 | 116 |
Figure S104. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D11V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S105. Gene #11: '6p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
6P GAIN MUTATED | 82 | 32 | 7 |
6P GAIN WILD-TYPE | 223 | 215 | 103 |
Figure S105. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S106. Gene #12: '6q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
6Q GAIN MUTATED | 1 | 0 | 9 | 29 | 11 | 13 | 7 | 2 |
6Q GAIN WILD-TYPE | 20 | 36 | 110 | 67 | 98 | 59 | 13 | 38 |
Figure S106. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D12V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S107. Gene #12: '6q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
6Q GAIN MUTATED | 9 | 11 | 24 | 24 | 4 |
6Q GAIN WILD-TYPE | 92 | 141 | 90 | 64 | 54 |
Figure S107. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D12V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S108. Gene #12: '6q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
6Q GAIN MUTATED | 23 | 15 | 15 | 90 | 7 |
6Q GAIN WILD-TYPE | 252 | 392 | 83 | 167 | 36 |
Figure S108. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D12V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S109. Gene #12: '6q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
6Q GAIN MUTATED | 17 | 14 | 10 | 14 | 44 | 3 |
6Q GAIN WILD-TYPE | 127 | 85 | 203 | 109 | 91 | 56 |
Figure S109. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D12V4.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S110. Gene #12: '6q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
6Q GAIN MUTATED | 38 | 12 | 9 |
6Q GAIN WILD-TYPE | 113 | 111 | 116 |
Figure S110. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D12V5.png)
P value = 0.01 (Fisher's exact test), Q value = 0.014
Table S111. Gene #12: '6q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
6Q GAIN MUTATED | 8 | 3 | 25 | 7 | 12 | 4 |
6Q GAIN WILD-TYPE | 56 | 43 | 65 | 45 | 104 | 27 |
Figure S111. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D12V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S112. Gene #12: '6q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
6Q GAIN MUTATED | 54 | 84 | 11 |
6Q GAIN WILD-TYPE | 505 | 220 | 201 |
Figure S112. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D12V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S113. Gene #12: '6q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
6Q GAIN MUTATED | 24 | 36 | 3 | 20 | 58 | 8 |
6Q GAIN WILD-TYPE | 265 | 127 | 87 | 270 | 125 | 52 |
Figure S113. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S114. Gene #12: '6q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
6Q GAIN MUTATED | 85 | 14 | 21 | 24 |
6Q GAIN WILD-TYPE | 220 | 198 | 248 | 251 |
Figure S114. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D12V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S115. Gene #12: '6q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
6Q GAIN MUTATED | 38 | 38 | 14 | 6 | 8 | 40 |
6Q GAIN WILD-TYPE | 256 | 114 | 231 | 134 | 88 | 94 |
Figure S115. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D12V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S116. Gene #12: '6q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
6Q GAIN MUTATED | 17 | 48 | 11 | 6 | 12 |
6Q GAIN WILD-TYPE | 163 | 91 | 88 | 105 | 121 |
Figure S116. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D12V11.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S117. Gene #12: '6q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
6Q GAIN MUTATED | 65 | 22 | 7 |
6Q GAIN WILD-TYPE | 240 | 225 | 103 |
Figure S117. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D12V12.png)
P value = 0.00704 (Fisher's exact test), Q value = 0.0098
Table S118. Gene #13: '7p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
7P GAIN MUTATED | 3 | 9 | 26 | 34 | 34 | 30 | 4 | 5 |
7P GAIN WILD-TYPE | 18 | 27 | 93 | 62 | 75 | 42 | 16 | 35 |
Figure S118. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S119. Gene #13: '7p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
7P GAIN MUTATED | 81 | 77 | 49 | 88 | 14 |
7P GAIN WILD-TYPE | 194 | 330 | 49 | 169 | 29 |
Figure S119. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D13V3.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.00042
Table S120. Gene #13: '7p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
7P GAIN MUTATED | 49 | 31 | 57 | 22 | 54 | 9 |
7P GAIN WILD-TYPE | 95 | 68 | 156 | 101 | 81 | 50 |
Figure S120. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D13V4.png)
P value = 0.00093 (Fisher's exact test), Q value = 0.0015
Table S121. Gene #13: '7p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
7P GAIN MUTATED | 154 | 109 | 45 |
7P GAIN WILD-TYPE | 405 | 195 | 167 |
Figure S121. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D13V7.png)
P value = 5e-05 (Fisher's exact test), Q value = 1e-04
Table S122. Gene #13: '7p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
7P GAIN MUTATED | 76 | 63 | 20 | 61 | 61 | 27 |
7P GAIN WILD-TYPE | 213 | 100 | 70 | 229 | 122 | 33 |
Figure S122. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 0.0244 (Fisher's exact test), Q value = 0.031
Table S123. Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
7P GAIN MUTATED | 102 | 45 | 77 | 76 |
7P GAIN WILD-TYPE | 203 | 167 | 192 | 199 |
Figure S123. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D13V9.png)
P value = 0.00137 (Fisher's exact test), Q value = 0.0022
Table S124. Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
7P GAIN MUTATED | 91 | 51 | 53 | 47 | 15 | 43 |
7P GAIN WILD-TYPE | 203 | 101 | 192 | 93 | 81 | 91 |
Figure S124. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D13V10.png)
P value = 0.0035 (Fisher's exact test), Q value = 0.0051
Table S125. Gene #14: '7q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
7Q GAIN MUTATED | 2 | 7 | 22 | 34 | 30 | 22 | 3 | 3 |
7Q GAIN WILD-TYPE | 19 | 29 | 97 | 62 | 79 | 50 | 17 | 37 |
Figure S125. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D14V1.png)
P value = 0.0268 (Fisher's exact test), Q value = 0.034
Table S126. Gene #14: '7q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
7Q GAIN MUTATED | 18 | 30 | 30 | 32 | 13 |
7Q GAIN WILD-TYPE | 83 | 122 | 84 | 56 | 45 |
Figure S126. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D14V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S127. Gene #14: '7q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
7Q GAIN MUTATED | 65 | 63 | 43 | 83 | 12 |
7Q GAIN WILD-TYPE | 210 | 344 | 55 | 174 | 31 |
Figure S127. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D14V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 1e-04
Table S128. Gene #14: '7q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
7Q GAIN MUTATED | 39 | 20 | 49 | 18 | 54 | 8 |
7Q GAIN WILD-TYPE | 105 | 79 | 164 | 105 | 81 | 51 |
Figure S128. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D14V4.png)
P value = 0.0161 (Fisher's exact test), Q value = 0.021
Table S129. Gene #14: '7q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
7Q GAIN MUTATED | 48 | 23 | 24 |
7Q GAIN WILD-TYPE | 103 | 100 | 101 |
Figure S129. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D14V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S130. Gene #14: '7q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
7Q GAIN MUTATED | 121 | 106 | 38 |
7Q GAIN WILD-TYPE | 438 | 198 | 174 |
Figure S130. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D14V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S131. Gene #14: '7q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
7Q GAIN MUTATED | 63 | 48 | 16 | 48 | 70 | 20 |
7Q GAIN WILD-TYPE | 226 | 115 | 74 | 242 | 113 | 40 |
Figure S131. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D14V8.png)
P value = 0.00367 (Fisher's exact test), Q value = 0.0053
Table S132. Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
7Q GAIN MUTATED | 96 | 42 | 66 | 55 |
7Q GAIN WILD-TYPE | 209 | 170 | 203 | 220 |
Figure S132. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D14V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S133. Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
7Q GAIN MUTATED | 66 | 43 | 45 | 39 | 12 | 54 |
7Q GAIN WILD-TYPE | 228 | 109 | 200 | 101 | 84 | 80 |
Figure S133. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D14V10.png)
P value = 0.00569 (Fisher's exact test), Q value = 0.008
Table S134. Gene #14: '7q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
7Q GAIN MUTATED | 42 | 54 | 27 | 29 | 26 |
7Q GAIN WILD-TYPE | 138 | 85 | 72 | 82 | 107 |
Figure S134. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D14V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S135. Gene #15: '8p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
8P GAIN MUTATED | 75 | 77 | 36 | 76 | 26 |
8P GAIN WILD-TYPE | 200 | 330 | 62 | 181 | 17 |
Figure S135. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D15V3.png)
P value = 0.00244 (Fisher's exact test), Q value = 0.0037
Table S136. Gene #15: '8p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
8P GAIN MUTATED | 42 | 28 | 44 | 24 | 53 | 15 |
8P GAIN WILD-TYPE | 102 | 71 | 169 | 99 | 82 | 44 |
Figure S136. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D15V4.png)
P value = 0.00846 (Fisher's exact test), Q value = 0.012
Table S137. Gene #15: '8p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
8P GAIN MUTATED | 155 | 93 | 40 |
8P GAIN WILD-TYPE | 404 | 211 | 172 |
Figure S137. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D15V7.png)
P value = 0.00124 (Fisher's exact test), Q value = 0.002
Table S138. Gene #15: '8p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
8P GAIN MUTATED | 90 | 41 | 15 | 64 | 66 | 12 |
8P GAIN WILD-TYPE | 199 | 122 | 75 | 226 | 117 | 48 |
Figure S138. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D15V8.png)
P value = 0.0198 (Fisher's exact test), Q value = 0.026
Table S139. Gene #15: '8p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
8P GAIN MUTATED | 98 | 42 | 72 | 72 |
8P GAIN WILD-TYPE | 207 | 170 | 197 | 203 |
Figure S139. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D15V9.png)
P value = 0.00533 (Fisher's exact test), Q value = 0.0075
Table S140. Gene #15: '8p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
8P GAIN MUTATED | 51 | 52 | 19 | 22 | 30 |
8P GAIN WILD-TYPE | 129 | 87 | 80 | 89 | 103 |
Figure S140. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D15V11.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S141. Gene #16: '8q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
8Q GAIN MUTATED | 14 | 12 | 74 | 62 | 43 | 35 | 15 | 14 |
8Q GAIN WILD-TYPE | 7 | 24 | 45 | 34 | 66 | 37 | 5 | 26 |
Figure S141. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D16V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S142. Gene #16: '8q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
8Q GAIN MUTATED | 65 | 68 | 64 | 56 | 16 |
8Q GAIN WILD-TYPE | 36 | 84 | 50 | 32 | 42 |
Figure S142. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D16V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S143. Gene #16: '8q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
8Q GAIN MUTATED | 164 | 124 | 39 | 163 | 39 |
8Q GAIN WILD-TYPE | 111 | 283 | 59 | 94 | 4 |
Figure S143. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D16V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S144. Gene #16: '8q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
8Q GAIN MUTATED | 85 | 46 | 64 | 51 | 93 | 22 |
8Q GAIN WILD-TYPE | 59 | 53 | 149 | 72 | 42 | 37 |
Figure S144. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D16V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S145. Gene #16: '8q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
8Q GAIN MUTATED | 274 | 183 | 69 |
8Q GAIN WILD-TYPE | 285 | 121 | 143 |
Figure S145. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D16V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S146. Gene #16: '8q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
8Q GAIN MUTATED | 143 | 93 | 22 | 117 | 121 | 30 |
8Q GAIN WILD-TYPE | 146 | 70 | 68 | 173 | 62 | 30 |
Figure S146. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D16V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S147. Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
8Q GAIN MUTATED | 196 | 67 | 109 | 147 |
8Q GAIN WILD-TYPE | 109 | 145 | 160 | 128 |
Figure S147. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D16V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S148. Gene #16: '8q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
8Q GAIN MUTATED | 161 | 86 | 80 | 56 | 44 | 92 |
8Q GAIN WILD-TYPE | 133 | 66 | 165 | 84 | 52 | 42 |
Figure S148. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D16V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S149. Gene #16: '8q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
8Q GAIN MUTATED | 94 | 99 | 35 | 35 | 51 |
8Q GAIN WILD-TYPE | 86 | 40 | 64 | 76 | 82 |
Figure S149. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D16V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S150. Gene #16: '8q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
8Q GAIN MUTATED | 180 | 92 | 42 |
8Q GAIN WILD-TYPE | 125 | 155 | 68 |
Figure S150. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S151. Gene #17: '9p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
9P GAIN MUTATED | 1 | 2 | 3 | 34 | 14 | 9 | 0 | 5 |
9P GAIN WILD-TYPE | 20 | 34 | 116 | 62 | 95 | 63 | 20 | 35 |
Figure S151. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D17V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S152. Gene #17: '9p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
9P GAIN MUTATED | 0 | 15 | 13 | 31 | 9 |
9P GAIN WILD-TYPE | 101 | 137 | 101 | 57 | 49 |
Figure S152. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D17V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S153. Gene #17: '9p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
9P GAIN MUTATED | 16 | 26 | 28 | 64 | 7 |
9P GAIN WILD-TYPE | 259 | 381 | 70 | 193 | 36 |
Figure S153. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D17V3.png)
P value = 1e-04 (Fisher's exact test), Q value = 2e-04
Table S154. Gene #17: '9p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
9P GAIN MUTATED | 16 | 9 | 21 | 15 | 35 | 2 |
9P GAIN WILD-TYPE | 128 | 90 | 192 | 108 | 100 | 57 |
Figure S154. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D17V4.png)
P value = 0.00784 (Fisher's exact test), Q value = 0.011
Table S155. Gene #17: '9p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
9P GAIN MUTATED | 31 | 11 | 12 |
9P GAIN WILD-TYPE | 120 | 112 | 113 |
Figure S155. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D17V5.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S156. Gene #17: '9p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
9P GAIN MUTATED | 9 | 3 | 26 | 6 | 4 | 6 |
9P GAIN WILD-TYPE | 55 | 43 | 64 | 46 | 112 | 25 |
Figure S156. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D17V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S157. Gene #17: '9p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
9P GAIN MUTATED | 47 | 78 | 16 |
9P GAIN WILD-TYPE | 512 | 226 | 196 |
Figure S157. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D17V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S158. Gene #17: '9p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
9P GAIN MUTATED | 24 | 22 | 4 | 27 | 58 | 6 |
9P GAIN WILD-TYPE | 265 | 141 | 86 | 263 | 125 | 54 |
Figure S158. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D17V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S159. Gene #17: '9p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
9P GAIN MUTATED | 69 | 19 | 19 | 30 |
9P GAIN WILD-TYPE | 236 | 193 | 250 | 245 |
Figure S159. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D17V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S160. Gene #17: '9p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
9P GAIN MUTATED | 29 | 19 | 21 | 18 | 7 | 43 |
9P GAIN WILD-TYPE | 265 | 133 | 224 | 122 | 89 | 91 |
Figure S160. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D17V10.png)
P value = 0.00047 (Fisher's exact test), Q value = 0.00081
Table S161. Gene #17: '9p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
9P GAIN MUTATED | 24 | 34 | 9 | 13 | 9 |
9P GAIN WILD-TYPE | 156 | 105 | 90 | 98 | 124 |
Figure S161. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D17V11.png)
P value = 0.00121 (Fisher's exact test), Q value = 0.0019
Table S162. Gene #18: '9q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
9Q GAIN MUTATED | 2 | 16 | 11 | 15 | 11 |
9Q GAIN WILD-TYPE | 99 | 136 | 103 | 73 | 47 |
Figure S162. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D18V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S163. Gene #18: '9q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
9Q GAIN MUTATED | 22 | 25 | 28 | 40 | 4 |
9Q GAIN WILD-TYPE | 253 | 382 | 70 | 217 | 39 |
Figure S163. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D18V3.png)
P value = 0.00191 (Fisher's exact test), Q value = 0.0029
Table S164. Gene #18: '9q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
9Q GAIN MUTATED | 56 | 49 | 14 |
9Q GAIN WILD-TYPE | 503 | 255 | 198 |
Figure S164. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D18V7.png)
P value = 0.0304 (Fisher's exact test), Q value = 0.038
Table S165. Gene #18: '9q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
9Q GAIN MUTATED | 30 | 21 | 5 | 24 | 31 | 8 |
9Q GAIN WILD-TYPE | 259 | 142 | 85 | 266 | 152 | 52 |
Figure S165. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 0.0459 (Fisher's exact test), Q value = 0.056
Table S166. Gene #18: '9q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
9Q GAIN MUTATED | 38 | 22 | 20 |
9Q GAIN WILD-TYPE | 267 | 225 | 90 |
Figure S166. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S167. Gene #19: '10p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
10P GAIN MUTATED | 2 | 4 | 17 | 42 | 11 | 27 | 6 | 4 |
10P GAIN WILD-TYPE | 19 | 32 | 102 | 54 | 98 | 45 | 14 | 36 |
Figure S167. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D19V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S168. Gene #19: '10p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
10P GAIN MUTATED | 10 | 18 | 41 | 39 | 5 |
10P GAIN WILD-TYPE | 91 | 134 | 73 | 49 | 53 |
Figure S168. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D19V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S169. Gene #19: '10p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
10P GAIN MUTATED | 50 | 29 | 16 | 112 | 7 |
10P GAIN WILD-TYPE | 225 | 378 | 82 | 145 | 36 |
Figure S169. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D19V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S170. Gene #19: '10p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
10P GAIN MUTATED | 28 | 17 | 12 | 24 | 59 | 2 |
10P GAIN WILD-TYPE | 116 | 82 | 201 | 99 | 76 | 57 |
Figure S170. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D19V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S171. Gene #19: '10p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
10P GAIN MUTATED | 53 | 21 | 16 |
10P GAIN WILD-TYPE | 98 | 102 | 109 |
Figure S171. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D19V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S172. Gene #19: '10p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
10P GAIN MUTATED | 7 | 11 | 40 | 7 | 19 | 6 |
10P GAIN WILD-TYPE | 57 | 35 | 50 | 45 | 97 | 25 |
Figure S172. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D19V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S173. Gene #19: '10p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
10P GAIN MUTATED | 75 | 122 | 17 |
10P GAIN WILD-TYPE | 484 | 182 | 195 |
Figure S173. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D19V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S174. Gene #19: '10p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
10P GAIN MUTATED | 32 | 41 | 3 | 35 | 81 | 22 |
10P GAIN WILD-TYPE | 257 | 122 | 87 | 255 | 102 | 38 |
Figure S174. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D19V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S175. Gene #19: '10p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
10P GAIN MUTATED | 109 | 23 | 30 | 48 |
10P GAIN WILD-TYPE | 196 | 189 | 239 | 227 |
Figure S175. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D19V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S176. Gene #19: '10p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
10P GAIN MUTATED | 67 | 49 | 17 | 14 | 6 | 57 |
10P GAIN WILD-TYPE | 227 | 103 | 228 | 126 | 90 | 77 |
Figure S176. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D19V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S177. Gene #19: '10p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
10P GAIN MUTATED | 29 | 62 | 11 | 10 | 16 |
10P GAIN WILD-TYPE | 151 | 77 | 88 | 101 | 117 |
Figure S177. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D19V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S178. Gene #19: '10p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
10P GAIN MUTATED | 89 | 26 | 13 |
10P GAIN WILD-TYPE | 216 | 221 | 97 |
Figure S178. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V12.png)
P value = 0.0324 (Fisher's exact test), Q value = 0.041
Table S179. Gene #20: '10q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
10Q GAIN MUTATED | 2 | 3 | 13 | 19 | 9 | 16 | 5 | 3 |
10Q GAIN WILD-TYPE | 19 | 33 | 106 | 77 | 100 | 56 | 15 | 37 |
Figure S179. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D20V1.png)
P value = 0.00071 (Fisher's exact test), Q value = 0.0012
Table S180. Gene #20: '10q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
10Q GAIN MUTATED | 10 | 11 | 25 | 19 | 5 |
10Q GAIN WILD-TYPE | 91 | 141 | 89 | 69 | 53 |
Figure S180. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D20V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S181. Gene #20: '10q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
10Q GAIN MUTATED | 29 | 22 | 14 | 54 | 5 |
10Q GAIN WILD-TYPE | 246 | 385 | 84 | 203 | 38 |
Figure S181. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D20V3.png)
P value = 0.00076 (Fisher's exact test), Q value = 0.0013
Table S182. Gene #20: '10q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
10Q GAIN MUTATED | 15 | 12 | 8 | 15 | 22 | 2 |
10Q GAIN WILD-TYPE | 129 | 87 | 205 | 108 | 113 | 57 |
Figure S182. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D20V4.png)
P value = 0.0366 (Fisher's exact test), Q value = 0.045
Table S183. Gene #20: '10q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
10Q GAIN MUTATED | 31 | 14 | 13 |
10Q GAIN WILD-TYPE | 120 | 109 | 112 |
Figure S183. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D20V5.png)
P value = 0.0335 (Fisher's exact test), Q value = 0.042
Table S184. Gene #20: '10q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
10Q GAIN MUTATED | 6 | 8 | 22 | 3 | 16 | 3 |
10Q GAIN WILD-TYPE | 58 | 38 | 68 | 49 | 100 | 28 |
Figure S184. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D20V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S185. Gene #20: '10q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
10Q GAIN MUTATED | 54 | 59 | 11 |
10Q GAIN WILD-TYPE | 505 | 245 | 201 |
Figure S185. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D20V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S186. Gene #20: '10q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
10Q GAIN MUTATED | 26 | 27 | 2 | 22 | 32 | 15 |
10Q GAIN WILD-TYPE | 263 | 136 | 88 | 268 | 151 | 45 |
Figure S186. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D20V8.png)
P value = 0.00035 (Fisher's exact test), Q value = 0.00062
Table S187. Gene #20: '10q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
10Q GAIN MUTATED | 55 | 15 | 22 | 30 |
10Q GAIN WILD-TYPE | 250 | 197 | 247 | 245 |
Figure S187. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D20V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S188. Gene #20: '10q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
10Q GAIN MUTATED | 41 | 29 | 12 | 11 | 4 | 25 |
10Q GAIN WILD-TYPE | 253 | 123 | 233 | 129 | 92 | 109 |
Figure S188. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D20V10.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00027
Table S189. Gene #20: '10q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
10Q GAIN MUTATED | 21 | 30 | 5 | 7 | 9 |
10Q GAIN WILD-TYPE | 159 | 109 | 94 | 104 | 124 |
Figure S189. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D20V11.png)
P value = 0.00276 (Fisher's exact test), Q value = 0.0041
Table S190. Gene #20: '10q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
10Q GAIN MUTATED | 46 | 15 | 11 |
10Q GAIN WILD-TYPE | 259 | 232 | 99 |
Figure S190. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S191. Gene #21: '11p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
11P GAIN MUTATED | 50 | 18 | 14 | 51 | 5 |
11P GAIN WILD-TYPE | 225 | 389 | 84 | 206 | 38 |
Figure S191. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D21V3.png)
P value = 0.00952 (Fisher's exact test), Q value = 0.013
Table S192. Gene #21: '11p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
11P GAIN MUTATED | 24 | 8 | 23 | 10 | 26 | 3 |
11P GAIN WILD-TYPE | 120 | 91 | 190 | 113 | 109 | 56 |
Figure S192. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D21V4.png)
P value = 0.00069 (Fisher's exact test), Q value = 0.0012
Table S193. Gene #21: '11p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
11P GAIN MUTATED | 69 | 54 | 14 |
11P GAIN WILD-TYPE | 490 | 250 | 198 |
Figure S193. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D21V7.png)
P value = 0.0113 (Fisher's exact test), Q value = 0.015
Table S194. Gene #21: '11p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
11P GAIN MUTATED | 35 | 29 | 7 | 25 | 33 | 8 |
11P GAIN WILD-TYPE | 254 | 134 | 83 | 265 | 150 | 52 |
Figure S194. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D21V8.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00016
Table S195. Gene #21: '11p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
11P GAIN MUTATED | 55 | 11 | 28 | 42 |
11P GAIN WILD-TYPE | 250 | 201 | 241 | 233 |
Figure S195. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D21V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S196. Gene #21: '11p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
11P GAIN MUTATED | 49 | 26 | 11 | 17 | 10 | 23 |
11P GAIN WILD-TYPE | 245 | 126 | 234 | 123 | 86 | 111 |
Figure S196. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D21V10.png)
P value = 0.00326 (Fisher's exact test), Q value = 0.0048
Table S197. Gene #21: '11p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
11P GAIN MUTATED | 32 | 24 | 6 | 12 | 9 |
11P GAIN WILD-TYPE | 148 | 115 | 93 | 99 | 124 |
Figure S197. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D21V11.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00032
Table S198. Gene #21: '11p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
11P GAIN MUTATED | 53 | 15 | 15 |
11P GAIN WILD-TYPE | 252 | 232 | 95 |
Figure S198. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D21V12.png)
P value = 0.0466 (Fisher's exact test), Q value = 0.057
Table S199. Gene #22: '11q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
11Q GAIN MUTATED | 7 | 12 | 19 | 8 | 2 |
11Q GAIN WILD-TYPE | 94 | 140 | 95 | 80 | 56 |
Figure S199. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D22V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S200. Gene #22: '11q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
11Q GAIN MUTATED | 21 | 11 | 10 | 46 | 6 |
11Q GAIN WILD-TYPE | 254 | 396 | 88 | 211 | 37 |
Figure S200. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D22V3.png)
P value = 0.00218 (Fisher's exact test), Q value = 0.0033
Table S201. Gene #22: '11q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
11Q GAIN MUTATED | 9 | 6 | 16 | 8 | 24 | 1 |
11Q GAIN WILD-TYPE | 135 | 93 | 197 | 115 | 111 | 58 |
Figure S201. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D22V4.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S202. Gene #22: '11q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
11Q GAIN MUTATED | 38 | 46 | 10 |
11Q GAIN WILD-TYPE | 521 | 258 | 202 |
Figure S202. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D22V7.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00027
Table S203. Gene #22: '11q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
11Q GAIN MUTATED | 18 | 19 | 5 | 14 | 27 | 11 |
11Q GAIN WILD-TYPE | 271 | 144 | 85 | 276 | 156 | 49 |
Figure S203. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D22V8.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00014
Table S204. Gene #22: '11q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
11Q GAIN MUTATED | 45 | 7 | 19 | 20 |
11Q GAIN WILD-TYPE | 260 | 205 | 250 | 255 |
Figure S204. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D22V9.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.00042
Table S205. Gene #22: '11q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
11Q GAIN MUTATED | 24 | 22 | 8 | 10 | 7 | 20 |
11Q GAIN WILD-TYPE | 270 | 130 | 237 | 130 | 89 | 114 |
Figure S205. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D22V10.png)
P value = 0.0423 (Fisher's exact test), Q value = 0.052
Table S206. Gene #22: '11q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
11Q GAIN MUTATED | 30 | 11 | 10 |
11Q GAIN WILD-TYPE | 275 | 236 | 100 |
Figure S206. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D22V12.png)
P value = 0.00071 (Fisher's exact test), Q value = 0.0012
Table S207. Gene #23: '12p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
12P GAIN MUTATED | 2 | 4 | 33 | 32 | 16 | 22 | 3 | 3 |
12P GAIN WILD-TYPE | 19 | 32 | 86 | 64 | 93 | 50 | 17 | 37 |
Figure S207. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D23V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S208. Gene #23: '12p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
12P GAIN MUTATED | 27 | 16 | 33 | 30 | 9 |
12P GAIN WILD-TYPE | 74 | 136 | 81 | 58 | 49 |
Figure S208. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D23V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S209. Gene #23: '12p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
12P GAIN MUTATED | 89 | 20 | 25 | 85 | 10 |
12P GAIN WILD-TYPE | 186 | 387 | 73 | 172 | 33 |
Figure S209. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D23V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S210. Gene #23: '12p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
12P GAIN MUTATED | 54 | 20 | 25 | 14 | 39 | 4 |
12P GAIN WILD-TYPE | 90 | 79 | 188 | 109 | 96 | 55 |
Figure S210. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D23V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S211. Gene #23: '12p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
12P GAIN MUTATED | 123 | 86 | 19 |
12P GAIN WILD-TYPE | 436 | 218 | 193 |
Figure S211. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D23V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S212. Gene #23: '12p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
12P GAIN MUTATED | 62 | 51 | 7 | 37 | 58 | 13 |
12P GAIN WILD-TYPE | 227 | 112 | 83 | 253 | 125 | 47 |
Figure S212. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D23V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S213. Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
12P GAIN MUTATED | 100 | 20 | 52 | 50 |
12P GAIN WILD-TYPE | 205 | 192 | 217 | 225 |
Figure S213. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D23V9.png)
P value = 0.00054 (Fisher's exact test), Q value = 0.00092
Table S214. Gene #23: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
12P GAIN MUTATED | 66 | 36 | 35 | 25 | 15 | 45 |
12P GAIN WILD-TYPE | 228 | 116 | 210 | 115 | 81 | 89 |
Figure S214. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D23V10.png)
P value = 0.0015 (Fisher's exact test), Q value = 0.0024
Table S215. Gene #23: '12p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
12P GAIN MUTATED | 46 | 39 | 15 | 11 | 25 |
12P GAIN WILD-TYPE | 134 | 100 | 84 | 100 | 108 |
Figure S215. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D23V11.png)
P value = 0.02 (Fisher's exact test), Q value = 0.026
Table S216. Gene #23: '12p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
12P GAIN MUTATED | 77 | 43 | 16 |
12P GAIN WILD-TYPE | 228 | 204 | 94 |
Figure S216. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D23V12.png)
P value = 0.00109 (Fisher's exact test), Q value = 0.0018
Table S217. Gene #24: '12q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
12Q GAIN MUTATED | 1 | 6 | 33 | 12 | 17 | 23 | 2 | 3 |
12Q GAIN WILD-TYPE | 20 | 30 | 86 | 84 | 92 | 49 | 18 | 37 |
Figure S217. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D24V1.png)
P value = 0.00146 (Fisher's exact test), Q value = 0.0023
Table S218. Gene #24: '12q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
12Q GAIN MUTATED | 26 | 17 | 32 | 11 | 11 |
12Q GAIN WILD-TYPE | 75 | 135 | 82 | 77 | 47 |
Figure S218. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D24V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S219. Gene #24: '12q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
12Q GAIN MUTATED | 96 | 19 | 26 | 41 | 9 |
12Q GAIN WILD-TYPE | 179 | 388 | 72 | 216 | 34 |
Figure S219. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D24V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S220. Gene #24: '12q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
12Q GAIN MUTATED | 54 | 18 | 29 | 9 | 15 | 5 |
12Q GAIN WILD-TYPE | 90 | 81 | 184 | 114 | 120 | 54 |
Figure S220. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D24V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S221. Gene #24: '12q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
12Q GAIN MUTATED | 127 | 47 | 16 |
12Q GAIN WILD-TYPE | 432 | 257 | 196 |
Figure S221. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D24V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S222. Gene #24: '12q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
12Q GAIN MUTATED | 68 | 50 | 6 | 35 | 22 | 9 |
12Q GAIN WILD-TYPE | 221 | 113 | 84 | 255 | 161 | 51 |
Figure S222. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D24V8.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.00042
Table S223. Gene #24: '12q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
12Q GAIN MUTATED | 58 | 17 | 53 | 58 |
12Q GAIN WILD-TYPE | 247 | 195 | 216 | 217 |
Figure S223. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D24V9.png)
P value = 0.00104 (Fisher's exact test), Q value = 0.0017
Table S224. Gene #24: '12q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
12Q GAIN MUTATED | 47 | 19 | 17 | 9 | 19 |
12Q GAIN WILD-TYPE | 133 | 120 | 82 | 102 | 114 |
Figure S224. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D24V11.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S225. Gene #25: '13q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
13Q GAIN MUTATED | 27 | 15 | 8 | 39 | 3 |
13Q GAIN WILD-TYPE | 248 | 392 | 90 | 218 | 40 |
Figure S225. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D25V3.png)
P value = 0.00443 (Fisher's exact test), Q value = 0.0063
Table S226. Gene #25: '13q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
13Q GAIN MUTATED | 14 | 7 | 11 | 7 | 19 | 0 |
13Q GAIN WILD-TYPE | 130 | 92 | 202 | 116 | 116 | 59 |
Figure S226. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D25V4.png)
P value = 0.00249 (Fisher's exact test), Q value = 0.0037
Table S227. Gene #25: '13q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
13Q GAIN MUTATED | 47 | 37 | 8 |
13Q GAIN WILD-TYPE | 512 | 267 | 204 |
Figure S227. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D25V7.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.00076
Table S228. Gene #25: '13q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
13Q GAIN MUTATED | 26 | 17 | 3 | 12 | 23 | 11 |
13Q GAIN WILD-TYPE | 263 | 146 | 87 | 278 | 160 | 49 |
Figure S228. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D25V8.png)
P value = 0.00366 (Fisher's exact test), Q value = 0.0053
Table S229. Gene #25: '13q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
13Q GAIN MUTATED | 41 | 11 | 21 | 17 |
13Q GAIN WILD-TYPE | 264 | 201 | 248 | 258 |
Figure S229. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D25V9.png)
P value = 0.00852 (Fisher's exact test), Q value = 0.012
Table S230. Gene #25: '13q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
13Q GAIN MUTATED | 26 | 23 | 11 | 8 | 8 | 14 |
13Q GAIN WILD-TYPE | 268 | 129 | 234 | 132 | 88 | 120 |
Figure S230. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D25V10.png)
P value = 0.0262 (Fisher's exact test), Q value = 0.033
Table S231. Gene #25: '13q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
13Q GAIN MUTATED | 34 | 13 | 6 |
13Q GAIN WILD-TYPE | 271 | 234 | 104 |
Figure S231. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D25V12.png)
P value = 0.00113 (Fisher's exact test), Q value = 0.0018
Table S232. Gene #26: '14q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
14Q GAIN MUTATED | 3 | 8 | 15 | 6 | 18 | 20 | 3 | 1 |
14Q GAIN WILD-TYPE | 18 | 28 | 104 | 90 | 91 | 52 | 17 | 39 |
Figure S232. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D26V1.png)
P value = 0.0145 (Fisher's exact test), Q value = 0.019
Table S233. Gene #26: '14q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
14Q GAIN MUTATED | 15 | 21 | 26 | 5 | 7 |
14Q GAIN WILD-TYPE | 86 | 131 | 88 | 83 | 51 |
Figure S233. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D26V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S234. Gene #26: '14q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
14Q GAIN MUTATED | 61 | 32 | 18 | 27 | 5 |
14Q GAIN WILD-TYPE | 214 | 375 | 80 | 230 | 38 |
Figure S234. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D26V3.png)
P value = 0.00128 (Fisher's exact test), Q value = 0.002
Table S235. Gene #26: '14q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
14Q GAIN MUTATED | 29 | 18 | 23 | 6 | 14 | 4 |
14Q GAIN WILD-TYPE | 115 | 81 | 190 | 117 | 121 | 55 |
Figure S235. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D26V4.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00016
Table S236. Gene #26: '14q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
14Q GAIN MUTATED | 95 | 35 | 12 |
14Q GAIN WILD-TYPE | 464 | 269 | 200 |
Figure S236. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D26V7.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.00049
Table S237. Gene #26: '14q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
14Q GAIN MUTATED | 44 | 33 | 7 | 32 | 12 | 14 |
14Q GAIN WILD-TYPE | 245 | 130 | 83 | 258 | 171 | 46 |
Figure S237. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D26V8.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.00044
Table S238. Gene #26: '14q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
14Q GAIN MUTATED | 36 | 13 | 42 | 51 |
14Q GAIN WILD-TYPE | 269 | 199 | 227 | 224 |
Figure S238. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D26V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S239. Gene #26: '14q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
14Q GAIN MUTATED | 63 | 28 | 20 | 20 | 7 | 4 |
14Q GAIN WILD-TYPE | 231 | 124 | 225 | 120 | 89 | 130 |
Figure S239. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D26V10.png)
P value = 0.00155 (Fisher's exact test), Q value = 0.0024
Table S240. Gene #26: '14q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
14Q GAIN MUTATED | 41 | 12 | 12 | 10 | 14 |
14Q GAIN WILD-TYPE | 139 | 127 | 87 | 101 | 119 |
Figure S240. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D26V11.png)
P value = 0.0423 (Fisher's exact test), Q value = 0.052
Table S241. Gene #27: '15q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
15Q GAIN MUTATED | 2 | 4 | 11 | 11 | 3 | 9 | 4 | 1 |
15Q GAIN WILD-TYPE | 19 | 32 | 108 | 85 | 106 | 63 | 16 | 39 |
Figure S241. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D27V1.png)
P value = 0.00184 (Fisher's exact test), Q value = 0.0028
Table S242. Gene #27: '15q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
15Q GAIN MUTATED | 31 | 21 | 4 | 30 | 1 |
15Q GAIN WILD-TYPE | 244 | 386 | 94 | 227 | 42 |
Figure S242. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D27V3.png)
P value = 0.0354 (Fisher's exact test), Q value = 0.044
Table S243. Gene #27: '15q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
15Q GAIN MUTATED | 11 | 9 | 10 | 4 | 16 | 7 |
15Q GAIN WILD-TYPE | 133 | 90 | 203 | 119 | 119 | 52 |
Figure S243. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D27V4.png)
P value = 0.00507 (Fisher's exact test), Q value = 0.0072
Table S244. Gene #27: '15q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
15Q GAIN MUTATED | 44 | 35 | 8 |
15Q GAIN WILD-TYPE | 515 | 269 | 204 |
Figure S244. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D27V7.png)
P value = 0.0222 (Fisher's exact test), Q value = 0.029
Table S245. Gene #27: '15q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
15Q GAIN MUTATED | 26 | 15 | 3 | 14 | 22 | 7 |
15Q GAIN WILD-TYPE | 263 | 148 | 87 | 276 | 161 | 53 |
Figure S245. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D27V8.png)
P value = 0.00807 (Fisher's exact test), Q value = 0.011
Table S246. Gene #27: '15q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
15Q GAIN MUTATED | 33 | 11 | 13 | 29 |
15Q GAIN WILD-TYPE | 272 | 201 | 256 | 246 |
Figure S246. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D27V9.png)
P value = 0.0195 (Fisher's exact test), Q value = 0.025
Table S247. Gene #27: '15q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
15Q GAIN MUTATED | 27 | 19 | 9 | 9 | 8 | 14 |
15Q GAIN WILD-TYPE | 267 | 133 | 236 | 131 | 88 | 120 |
Figure S247. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D27V10.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S248. Gene #28: '16p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
16P GAIN MUTATED | 11 | 14 | 52 | 33 | 73 | 36 | 12 | 14 |
16P GAIN WILD-TYPE | 10 | 22 | 67 | 63 | 36 | 36 | 8 | 26 |
Figure S248. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D28V1.png)
P value = 0.00124 (Fisher's exact test), Q value = 0.002
Table S249. Gene #28: '16p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
16P GAIN MUTATED | 44 | 75 | 58 | 29 | 39 |
16P GAIN WILD-TYPE | 57 | 77 | 56 | 59 | 19 |
Figure S249. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D28V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S250. Gene #28: '16p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
16P GAIN MUTATED | 128 | 156 | 66 | 95 | 19 |
16P GAIN WILD-TYPE | 147 | 251 | 32 | 162 | 24 |
Figure S250. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D28V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S251. Gene #28: '16p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
16P GAIN MUTATED | 58 | 44 | 112 | 33 | 42 | 15 |
16P GAIN WILD-TYPE | 86 | 55 | 101 | 90 | 93 | 44 |
Figure S251. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D28V4.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S252. Gene #28: '16p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
16P GAIN MUTATED | 48 | 26 | 31 | 25 | 49 | 11 |
16P GAIN WILD-TYPE | 16 | 20 | 59 | 27 | 67 | 20 |
Figure S252. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D28V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S253. Gene #28: '16p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
16P GAIN MUTATED | 281 | 99 | 83 |
16P GAIN WILD-TYPE | 278 | 205 | 129 |
Figure S253. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D28V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S254. Gene #28: '16p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
16P GAIN MUTATED | 144 | 81 | 33 | 132 | 47 | 26 |
16P GAIN WILD-TYPE | 145 | 82 | 57 | 158 | 136 | 34 |
Figure S254. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S255. Gene #28: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
16P GAIN MUTATED | 103 | 72 | 132 | 146 |
16P GAIN WILD-TYPE | 202 | 140 | 137 | 129 |
Figure S255. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D28V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S256. Gene #28: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
16P GAIN MUTATED | 143 | 65 | 97 | 73 | 45 | 30 |
16P GAIN WILD-TYPE | 151 | 87 | 148 | 67 | 51 | 104 |
Figure S256. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D28V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S257. Gene #28: '16p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
16P GAIN MUTATED | 96 | 35 | 47 | 45 | 50 |
16P GAIN WILD-TYPE | 84 | 104 | 52 | 66 | 83 |
Figure S257. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D28V11.png)
P value = 0.00411 (Fisher's exact test), Q value = 0.0059
Table S258. Gene #28: '16p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
16P GAIN MUTATED | 114 | 98 | 61 |
16P GAIN WILD-TYPE | 191 | 149 | 49 |
Figure S258. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V12.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.014
Table S259. Gene #29: '16q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
16Q GAIN MUTATED | 45 | 36 | 12 | 44 | 5 |
16Q GAIN WILD-TYPE | 230 | 371 | 86 | 213 | 38 |
Figure S259. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D29V3.png)
P value = 0.0313 (Fisher's exact test), Q value = 0.039
Table S260. Gene #29: '16q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
16Q GAIN MUTATED | 25 | 11 | 20 | 17 | 22 | 2 |
16Q GAIN WILD-TYPE | 119 | 88 | 193 | 106 | 113 | 57 |
Figure S260. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D29V4.png)
P value = 0.00743 (Fisher's exact test), Q value = 0.01
Table S261. Gene #29: '16q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
16Q GAIN MUTATED | 38 | 25 | 5 | 31 | 26 | 16 |
16Q GAIN WILD-TYPE | 251 | 138 | 85 | 259 | 157 | 44 |
Figure S261. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 0.00176 (Fisher's exact test), Q value = 0.0027
Table S262. Gene #29: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
16Q GAIN MUTATED | 58 | 17 | 29 | 35 |
16Q GAIN WILD-TYPE | 247 | 195 | 240 | 240 |
Figure S262. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D29V9.png)
P value = 0.00151 (Fisher's exact test), Q value = 0.0024
Table S263. Gene #29: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
16Q GAIN MUTATED | 37 | 37 | 22 | 15 | 13 | 15 |
16Q GAIN WILD-TYPE | 257 | 115 | 223 | 125 | 83 | 119 |
Figure S263. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D29V10.png)
P value = 0.0297 (Fisher's exact test), Q value = 0.037
Table S264. Gene #30: '17p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
17P GAIN MUTATED | 1 | 5 | 22 | 8 | 7 | 5 | 3 | 1 |
17P GAIN WILD-TYPE | 20 | 31 | 97 | 88 | 102 | 67 | 17 | 39 |
Figure S264. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D30V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S265. Gene #30: '17p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
17P GAIN MUTATED | 48 | 21 | 10 | 21 | 7 |
17P GAIN WILD-TYPE | 227 | 386 | 88 | 236 | 36 |
Figure S265. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D30V3.png)
P value = 0.0244 (Fisher's exact test), Q value = 0.031
Table S266. Gene #30: '17p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
17P GAIN MUTATED | 23 | 12 | 12 | 12 | 16 | 3 |
17P GAIN WILD-TYPE | 121 | 87 | 201 | 111 | 119 | 56 |
Figure S266. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D30V4.png)
P value = 0.0393 (Fisher's exact test), Q value = 0.049
Table S267. Gene #30: '17p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
17P GAIN MUTATED | 65 | 29 | 12 |
17P GAIN WILD-TYPE | 494 | 275 | 200 |
Figure S267. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D30V7.png)
P value = 0.0166 (Fisher's exact test), Q value = 0.022
Table S268. Gene #30: '17p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
17P GAIN MUTATED | 40 | 19 | 2 | 25 | 16 | 4 |
17P GAIN WILD-TYPE | 249 | 144 | 88 | 265 | 167 | 56 |
Figure S268. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 0.00428 (Fisher's exact test), Q value = 0.0061
Table S269. Gene #30: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
17P GAIN MUTATED | 38 | 16 | 16 | 7 | 17 | 10 |
17P GAIN WILD-TYPE | 256 | 136 | 229 | 133 | 79 | 124 |
Figure S269. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D30V10.png)
P value = 0.025 (Fisher's exact test), Q value = 0.032
Table S270. Gene #30: '17p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
17P GAIN MUTATED | 41 | 18 | 7 |
17P GAIN WILD-TYPE | 264 | 229 | 103 |
Figure S270. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S271. Gene #31: '17q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
17Q GAIN MUTATED | 3 | 8 | 46 | 8 | 10 | 11 | 5 | 4 |
17Q GAIN WILD-TYPE | 18 | 28 | 73 | 88 | 99 | 61 | 15 | 36 |
Figure S271. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D31V1.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00021
Table S272. Gene #31: '17q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
17Q GAIN MUTATED | 34 | 23 | 24 | 7 | 7 |
17Q GAIN WILD-TYPE | 67 | 129 | 90 | 81 | 51 |
Figure S272. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D31V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S273. Gene #31: '17q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
17Q GAIN MUTATED | 115 | 39 | 15 | 35 | 13 |
17Q GAIN WILD-TYPE | 160 | 368 | 83 | 222 | 30 |
Figure S273. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D31V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S274. Gene #31: '17q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
17Q GAIN MUTATED | 53 | 25 | 36 | 18 | 18 | 8 |
17Q GAIN WILD-TYPE | 91 | 74 | 177 | 105 | 117 | 51 |
Figure S274. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D31V4.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00032
Table S275. Gene #31: '17q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
17Q GAIN MUTATED | 6 | 12 | 8 | 9 | 37 | 4 |
17Q GAIN WILD-TYPE | 58 | 34 | 82 | 43 | 79 | 27 |
Figure S275. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D31V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S276. Gene #31: '17q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
17Q GAIN MUTATED | 148 | 42 | 26 |
17Q GAIN WILD-TYPE | 411 | 262 | 186 |
Figure S276. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D31V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S277. Gene #31: '17q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
17Q GAIN MUTATED | 89 | 40 | 7 | 54 | 19 | 7 |
17Q GAIN WILD-TYPE | 200 | 123 | 83 | 236 | 164 | 53 |
Figure S277. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D31V8.png)
P value = 0.0124 (Fisher's exact test), Q value = 0.016
Table S278. Gene #31: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
17Q GAIN MUTATED | 56 | 30 | 55 | 71 |
17Q GAIN WILD-TYPE | 249 | 182 | 214 | 204 |
Figure S278. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D31V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S279. Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
17Q GAIN MUTATED | 82 | 25 | 33 | 30 | 29 | 13 |
17Q GAIN WILD-TYPE | 212 | 127 | 212 | 110 | 67 | 121 |
Figure S279. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D31V10.png)
P value = 0.00111 (Fisher's exact test), Q value = 0.0018
Table S280. Gene #31: '17q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
17Q GAIN MUTATED | 57 | 22 | 15 | 18 | 23 |
17Q GAIN WILD-TYPE | 123 | 117 | 84 | 93 | 110 |
Figure S280. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D31V11.png)
P value = 0.00171 (Fisher's exact test), Q value = 0.0027
Table S281. Gene #31: '17q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
17Q GAIN MUTATED | 80 | 35 | 20 |
17Q GAIN WILD-TYPE | 225 | 212 | 90 |
Figure S281. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D31V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S282. Gene #32: '18p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
18P GAIN MUTATED | 1 | 1 | 19 | 35 | 16 | 10 | 4 | 1 |
18P GAIN WILD-TYPE | 20 | 35 | 100 | 61 | 93 | 62 | 16 | 39 |
Figure S282. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D32V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S283. Gene #32: '18p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
18P GAIN MUTATED | 20 | 13 | 17 | 32 | 5 |
18P GAIN WILD-TYPE | 81 | 139 | 97 | 56 | 53 |
Figure S283. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D32V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S284. Gene #32: '18p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
18P GAIN MUTATED | 44 | 22 | 19 | 81 | 11 |
18P GAIN WILD-TYPE | 231 | 385 | 79 | 176 | 32 |
Figure S284. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D32V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S285. Gene #32: '18p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
18P GAIN MUTATED | 21 | 10 | 15 | 14 | 51 | 2 |
18P GAIN WILD-TYPE | 123 | 89 | 198 | 109 | 84 | 57 |
Figure S285. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D32V4.png)
P value = 0.00269 (Fisher's exact test), Q value = 0.004
Table S286. Gene #32: '18p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
18P GAIN MUTATED | 39 | 13 | 18 |
18P GAIN WILD-TYPE | 112 | 110 | 107 |
Figure S286. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D32V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S287. Gene #32: '18p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
18P GAIN MUTATED | 13 | 5 | 34 | 3 | 11 | 4 |
18P GAIN WILD-TYPE | 51 | 41 | 56 | 49 | 105 | 27 |
Figure S287. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D32V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S288. Gene #32: '18p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
18P GAIN MUTATED | 83 | 88 | 6 |
18P GAIN WILD-TYPE | 476 | 216 | 206 |
Figure S288. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D32V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S289. Gene #32: '18p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
18P GAIN MUTATED | 49 | 21 | 3 | 20 | 70 | 14 |
18P GAIN WILD-TYPE | 240 | 142 | 87 | 270 | 113 | 46 |
Figure S289. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D32V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S290. Gene #32: '18p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
18P GAIN MUTATED | 90 | 14 | 26 | 40 |
18P GAIN WILD-TYPE | 215 | 198 | 243 | 235 |
Figure S290. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D32V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S291. Gene #32: '18p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
18P GAIN MUTATED | 33 | 36 | 19 | 14 | 14 | 54 |
18P GAIN WILD-TYPE | 261 | 116 | 226 | 126 | 82 | 80 |
Figure S291. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D32V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S292. Gene #32: '18p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
18P GAIN MUTATED | 26 | 51 | 10 | 11 | 11 |
18P GAIN WILD-TYPE | 154 | 88 | 89 | 100 | 122 |
Figure S292. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D32V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S293. Gene #32: '18p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
18P GAIN MUTATED | 72 | 21 | 16 |
18P GAIN WILD-TYPE | 233 | 226 | 94 |
Figure S293. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D32V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S294. Gene #33: '18q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
18Q GAIN MUTATED | 2 | 1 | 21 | 30 | 17 | 5 | 4 | 1 |
18Q GAIN WILD-TYPE | 19 | 35 | 98 | 66 | 92 | 67 | 16 | 39 |
Figure S294. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D33V1.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S295. Gene #33: '18q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
18Q GAIN MUTATED | 22 | 13 | 14 | 27 | 5 |
18Q GAIN WILD-TYPE | 79 | 139 | 100 | 61 | 53 |
Figure S295. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D33V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S296. Gene #33: '18q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
18Q GAIN MUTATED | 40 | 16 | 20 | 66 | 11 |
18Q GAIN WILD-TYPE | 235 | 391 | 78 | 191 | 32 |
Figure S296. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D33V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S297. Gene #33: '18q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
18Q GAIN MUTATED | 20 | 10 | 16 | 11 | 35 | 3 |
18Q GAIN WILD-TYPE | 124 | 89 | 197 | 112 | 100 | 56 |
Figure S297. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D33V4.png)
P value = 0.00363 (Fisher's exact test), Q value = 0.0053
Table S298. Gene #33: '18q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
18Q GAIN MUTATED | 13 | 6 | 26 | 5 | 12 | 2 |
18Q GAIN WILD-TYPE | 51 | 40 | 64 | 47 | 104 | 29 |
Figure S298. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D33V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S299. Gene #33: '18q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
18Q GAIN MUTATED | 83 | 63 | 7 |
18Q GAIN WILD-TYPE | 476 | 241 | 205 |
Figure S299. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D33V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S300. Gene #33: '18q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
18Q GAIN MUTATED | 50 | 17 | 3 | 24 | 53 | 6 |
18Q GAIN WILD-TYPE | 239 | 146 | 87 | 266 | 130 | 54 |
Figure S300. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D33V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S301. Gene #33: '18q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
18Q GAIN MUTATED | 69 | 13 | 25 | 40 |
18Q GAIN WILD-TYPE | 236 | 199 | 244 | 235 |
Figure S301. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D33V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S302. Gene #33: '18q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
18Q GAIN MUTATED | 38 | 23 | 18 | 15 | 13 | 40 |
18Q GAIN WILD-TYPE | 256 | 129 | 227 | 125 | 83 | 94 |
Figure S302. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D33V10.png)
P value = 0.00087 (Fisher's exact test), Q value = 0.0014
Table S303. Gene #33: '18q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
18Q GAIN MUTATED | 25 | 32 | 9 | 8 | 11 |
18Q GAIN WILD-TYPE | 155 | 107 | 90 | 103 | 122 |
Figure S303. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D33V11.png)
P value = 0.00175 (Fisher's exact test), Q value = 0.0027
Table S304. Gene #33: '18q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
18Q GAIN MUTATED | 53 | 18 | 14 |
18Q GAIN WILD-TYPE | 252 | 229 | 96 |
Figure S304. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D33V12.png)
P value = 0.00037 (Fisher's exact test), Q value = 0.00065
Table S305. Gene #34: '19p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
19P GAIN MUTATED | 6 | 3 | 15 | 29 | 15 | 11 | 9 | 4 |
19P GAIN WILD-TYPE | 15 | 33 | 104 | 67 | 94 | 61 | 11 | 36 |
Figure S305. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D34V1.png)
P value = 0.00512 (Fisher's exact test), Q value = 0.0073
Table S306. Gene #34: '19p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
19P GAIN MUTATED | 12 | 18 | 26 | 25 | 11 |
19P GAIN WILD-TYPE | 89 | 134 | 88 | 63 | 47 |
Figure S306. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D34V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S307. Gene #34: '19p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
19P GAIN MUTATED | 41 | 40 | 28 | 73 | 8 |
19P GAIN WILD-TYPE | 234 | 367 | 70 | 184 | 35 |
Figure S307. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D34V3.png)
P value = 0.00203 (Fisher's exact test), Q value = 0.0031
Table S308. Gene #34: '19p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
19P GAIN MUTATED | 20 | 20 | 25 | 19 | 38 | 6 |
19P GAIN WILD-TYPE | 124 | 79 | 188 | 104 | 97 | 53 |
Figure S308. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D34V4.png)
P value = 0.0316 (Fisher's exact test), Q value = 0.04
Table S309. Gene #34: '19p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
19P GAIN MUTATED | 39 | 18 | 19 |
19P GAIN WILD-TYPE | 112 | 105 | 106 |
Figure S309. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D34V5.png)
P value = 0.0239 (Fisher's exact test), Q value = 0.031
Table S310. Gene #34: '19p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
19P GAIN MUTATED | 13 | 9 | 27 | 4 | 17 | 6 |
19P GAIN WILD-TYPE | 51 | 37 | 63 | 48 | 99 | 25 |
Figure S310. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D34V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S311. Gene #34: '19p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
19P GAIN MUTATED | 80 | 82 | 26 |
19P GAIN WILD-TYPE | 479 | 222 | 186 |
Figure S311. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D34V7.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S312. Gene #34: '19p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
19P GAIN MUTATED | 39 | 27 | 10 | 41 | 55 | 16 |
19P GAIN WILD-TYPE | 250 | 136 | 80 | 249 | 128 | 44 |
Figure S312. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D34V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S313. Gene #34: '19p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
19P GAIN MUTATED | 85 | 24 | 41 | 37 |
19P GAIN WILD-TYPE | 220 | 188 | 228 | 238 |
Figure S313. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D34V9.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00023
Table S314. Gene #34: '19p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
19P GAIN MUTATED | 46 | 39 | 30 | 20 | 13 | 39 |
19P GAIN WILD-TYPE | 248 | 113 | 215 | 120 | 83 | 95 |
Figure S314. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D34V10.png)
P value = 0.0166 (Fisher's exact test), Q value = 0.022
Table S315. Gene #34: '19p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
19P GAIN MUTATED | 24 | 38 | 15 | 21 | 19 |
19P GAIN WILD-TYPE | 156 | 101 | 84 | 90 | 114 |
Figure S315. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D34V11.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0018
Table S316. Gene #35: '19q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
19Q GAIN MUTATED | 5 | 3 | 26 | 34 | 15 | 17 | 8 | 5 |
19Q GAIN WILD-TYPE | 16 | 33 | 93 | 62 | 94 | 55 | 12 | 35 |
Figure S316. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D35V1.png)
P value = 0.00376 (Fisher's exact test), Q value = 0.0054
Table S317. Gene #35: '19q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
19Q GAIN MUTATED | 18 | 22 | 33 | 29 | 11 |
19Q GAIN WILD-TYPE | 83 | 130 | 81 | 59 | 47 |
Figure S317. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D35V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S318. Gene #35: '19q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
19Q GAIN MUTATED | 50 | 45 | 30 | 87 | 11 |
19Q GAIN WILD-TYPE | 225 | 362 | 68 | 170 | 32 |
Figure S318. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D35V3.png)
P value = 0.00267 (Fisher's exact test), Q value = 0.004
Table S319. Gene #35: '19q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
19Q GAIN MUTATED | 30 | 18 | 31 | 18 | 42 | 7 |
19Q GAIN WILD-TYPE | 114 | 81 | 182 | 105 | 93 | 52 |
Figure S319. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D35V4.png)
P value = 0.0182 (Fisher's exact test), Q value = 0.024
Table S320. Gene #35: '19q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
19Q GAIN MUTATED | 44 | 22 | 20 |
19Q GAIN WILD-TYPE | 107 | 101 | 105 |
Figure S320. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D35V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S321. Gene #35: '19q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
19Q GAIN MUTATED | 97 | 92 | 32 |
19Q GAIN WILD-TYPE | 462 | 212 | 180 |
Figure S321. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D35V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S322. Gene #35: '19q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
19Q GAIN MUTATED | 48 | 34 | 13 | 45 | 62 | 19 |
19Q GAIN WILD-TYPE | 241 | 129 | 77 | 245 | 121 | 41 |
Figure S322. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S323. Gene #35: '19q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
19Q GAIN MUTATED | 96 | 30 | 46 | 49 |
19Q GAIN WILD-TYPE | 209 | 182 | 223 | 226 |
Figure S323. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D35V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S324. Gene #35: '19q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
19Q GAIN MUTATED | 61 | 50 | 35 | 21 | 14 | 40 |
19Q GAIN WILD-TYPE | 233 | 102 | 210 | 119 | 82 | 94 |
Figure S324. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D35V10.png)
P value = 0.016 (Fisher's exact test), Q value = 0.021
Table S325. Gene #35: '19q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
19Q GAIN MUTATED | 35 | 43 | 15 | 24 | 21 |
19Q GAIN WILD-TYPE | 145 | 96 | 84 | 87 | 112 |
Figure S325. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D35V11.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S326. Gene #36: '20p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
20P GAIN MUTATED | 8 | 13 | 49 | 42 | 34 | 42 | 15 | 7 |
20P GAIN WILD-TYPE | 13 | 23 | 70 | 54 | 75 | 30 | 5 | 33 |
Figure S326. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D36V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S327. Gene #36: '20p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
20P GAIN MUTATED | 42 | 45 | 68 | 38 | 17 |
20P GAIN WILD-TYPE | 59 | 107 | 46 | 50 | 41 |
Figure S327. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D36V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S328. Gene #36: '20p gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
20P GAIN MUTATED | 153 | 61 | 55 | 127 | 20 |
20P GAIN WILD-TYPE | 122 | 346 | 43 | 130 | 23 |
Figure S328. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D36V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S329. Gene #36: '20p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
20P GAIN MUTATED | 78 | 43 | 56 | 41 | 56 | 15 |
20P GAIN WILD-TYPE | 66 | 56 | 157 | 82 | 79 | 44 |
Figure S329. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D36V4.png)
P value = 0.0107 (Fisher's exact test), Q value = 0.014
Table S330. Gene #36: '20p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
20P GAIN MUTATED | 78 | 46 | 44 |
20P GAIN WILD-TYPE | 73 | 77 | 81 |
Figure S330. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D36V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S331. Gene #36: '20p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
20P GAIN MUTATED | 229 | 138 | 47 |
20P GAIN WILD-TYPE | 330 | 166 | 165 |
Figure S331. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D36V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S332. Gene #36: '20p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
20P GAIN MUTATED | 111 | 90 | 7 | 105 | 77 | 24 |
20P GAIN WILD-TYPE | 178 | 73 | 83 | 185 | 106 | 36 |
Figure S332. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D36V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S333. Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
20P GAIN MUTATED | 146 | 45 | 90 | 129 |
20P GAIN WILD-TYPE | 159 | 167 | 179 | 146 |
Figure S333. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D36V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S334. Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
20P GAIN MUTATED | 129 | 76 | 63 | 59 | 28 | 55 |
20P GAIN WILD-TYPE | 165 | 76 | 182 | 81 | 68 | 79 |
Figure S334. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D36V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S335. Gene #36: '20p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
20P GAIN MUTATED | 90 | 68 | 32 | 37 | 35 |
20P GAIN WILD-TYPE | 90 | 71 | 67 | 74 | 98 |
Figure S335. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D36V11.png)
P value = 0.00469 (Fisher's exact test), Q value = 0.0067
Table S336. Gene #36: '20p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
20P GAIN MUTATED | 136 | 78 | 48 |
20P GAIN WILD-TYPE | 169 | 169 | 62 |
Figure S336. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D36V12.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S337. Gene #37: '20q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
20Q GAIN MUTATED | 7 | 13 | 61 | 40 | 35 | 42 | 15 | 10 |
20Q GAIN WILD-TYPE | 14 | 23 | 58 | 56 | 74 | 30 | 5 | 30 |
Figure S337. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D37V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S338. Gene #37: '20q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
20Q GAIN MUTATED | 52 | 49 | 71 | 34 | 17 |
20Q GAIN WILD-TYPE | 49 | 103 | 43 | 54 | 41 |
Figure S338. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D37V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S339. Gene #37: '20q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
20Q GAIN MUTATED | 178 | 63 | 55 | 133 | 22 |
20Q GAIN WILD-TYPE | 97 | 344 | 43 | 124 | 21 |
Figure S339. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D37V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S340. Gene #37: '20q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
20Q GAIN MUTATED | 93 | 48 | 60 | 41 | 60 | 14 |
20Q GAIN WILD-TYPE | 51 | 51 | 153 | 82 | 75 | 45 |
Figure S340. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D37V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S341. Gene #37: '20q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
20Q GAIN MUTATED | 258 | 143 | 48 |
20Q GAIN WILD-TYPE | 301 | 161 | 164 |
Figure S341. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D37V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S342. Gene #37: '20q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
20Q GAIN MUTATED | 131 | 95 | 7 | 111 | 78 | 27 |
20Q GAIN WILD-TYPE | 158 | 68 | 83 | 179 | 105 | 33 |
Figure S342. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D37V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S343. Gene #37: '20q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
20Q GAIN MUTATED | 155 | 46 | 104 | 141 |
20Q GAIN WILD-TYPE | 150 | 166 | 165 | 134 |
Figure S343. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D37V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S344. Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
20Q GAIN MUTATED | 155 | 76 | 67 | 58 | 32 | 58 |
20Q GAIN WILD-TYPE | 139 | 76 | 178 | 82 | 64 | 76 |
Figure S344. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D37V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S345. Gene #37: '20q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
20Q GAIN MUTATED | 103 | 72 | 37 | 40 | 39 |
20Q GAIN WILD-TYPE | 77 | 67 | 62 | 71 | 94 |
Figure S345. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D37V11.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00035
Table S346. Gene #37: '20q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
20Q GAIN MUTATED | 158 | 84 | 49 |
20Q GAIN WILD-TYPE | 147 | 163 | 61 |
Figure S346. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D37V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S347. Gene #38: '21q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
21Q GAIN MUTATED | 2 | 2 | 16 | 31 | 11 | 31 | 8 | 3 |
21Q GAIN WILD-TYPE | 19 | 34 | 103 | 65 | 98 | 41 | 12 | 37 |
Figure S347. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D38V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S348. Gene #38: '21q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
21Q GAIN MUTATED | 12 | 15 | 44 | 27 | 6 |
21Q GAIN WILD-TYPE | 89 | 137 | 70 | 61 | 52 |
Figure S348. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D38V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S349. Gene #38: '21q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
21Q GAIN MUTATED | 42 | 32 | 21 | 89 | 12 |
21Q GAIN WILD-TYPE | 233 | 375 | 77 | 168 | 31 |
Figure S349. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D38V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S350. Gene #38: '21q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
21Q GAIN MUTATED | 25 | 18 | 19 | 14 | 49 | 3 |
21Q GAIN WILD-TYPE | 119 | 81 | 194 | 109 | 86 | 56 |
Figure S350. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D38V4.png)
P value = 0.00082 (Fisher's exact test), Q value = 0.0014
Table S351. Gene #38: '21q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
21Q GAIN MUTATED | 47 | 23 | 16 |
21Q GAIN WILD-TYPE | 104 | 100 | 109 |
Figure S351. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D38V5.png)
P value = 0.002 (Fisher's exact test), Q value = 0.0031
Table S352. Gene #38: '21q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
21Q GAIN MUTATED | 7 | 8 | 30 | 8 | 21 | 12 |
21Q GAIN WILD-TYPE | 57 | 38 | 60 | 44 | 95 | 19 |
Figure S352. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D38V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S353. Gene #38: '21q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
21Q GAIN MUTATED | 75 | 106 | 14 |
21Q GAIN WILD-TYPE | 484 | 198 | 198 |
Figure S353. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D38V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S354. Gene #38: '21q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
21Q GAIN MUTATED | 38 | 42 | 4 | 25 | 61 | 25 |
21Q GAIN WILD-TYPE | 251 | 121 | 86 | 265 | 122 | 35 |
Figure S354. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D38V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S355. Gene #38: '21q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
21Q GAIN MUTATED | 93 | 23 | 27 | 48 |
21Q GAIN WILD-TYPE | 212 | 189 | 242 | 227 |
Figure S355. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D38V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S356. Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
21Q GAIN MUTATED | 53 | 47 | 24 | 14 | 9 | 44 |
21Q GAIN WILD-TYPE | 241 | 105 | 221 | 126 | 87 | 90 |
Figure S356. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D38V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S357. Gene #38: '21q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
21Q GAIN MUTATED | 29 | 51 | 6 | 12 | 19 |
21Q GAIN WILD-TYPE | 151 | 88 | 93 | 99 | 114 |
Figure S357. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D38V11.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S358. Gene #38: '21q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
21Q GAIN MUTATED | 78 | 30 | 9 |
21Q GAIN WILD-TYPE | 227 | 217 | 101 |
Figure S358. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D38V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S359. Gene #39: '22q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
22Q GAIN MUTATED | 3 | 0 | 12 | 18 | 2 | 15 | 2 | 0 |
22Q GAIN WILD-TYPE | 18 | 36 | 107 | 78 | 107 | 57 | 18 | 40 |
Figure S359. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D39V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S360. Gene #39: '22q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
22Q GAIN MUTATED | 9 | 3 | 24 | 15 | 1 |
22Q GAIN WILD-TYPE | 92 | 149 | 90 | 73 | 57 |
Figure S360. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D39V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S361. Gene #39: '22q gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
22Q GAIN MUTATED | 29 | 9 | 3 | 53 | 5 |
22Q GAIN WILD-TYPE | 246 | 398 | 95 | 204 | 38 |
Figure S361. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D39V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S362. Gene #39: '22q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
22Q GAIN MUTATED | 13 | 14 | 6 | 9 | 22 | 0 |
22Q GAIN WILD-TYPE | 131 | 85 | 207 | 114 | 113 | 59 |
Figure S362. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D39V4.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00025
Table S363. Gene #39: '22q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
22Q GAIN MUTATED | 30 | 9 | 6 |
22Q GAIN WILD-TYPE | 121 | 114 | 119 |
Figure S363. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D39V5.png)
P value = 9e-04 (Fisher's exact test), Q value = 0.0015
Table S364. Gene #39: '22q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
22Q GAIN MUTATED | 1 | 1 | 17 | 4 | 16 | 6 |
22Q GAIN WILD-TYPE | 63 | 45 | 73 | 48 | 100 | 25 |
Figure S364. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D39V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S365. Gene #39: '22q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
22Q GAIN MUTATED | 35 | 61 | 1 |
22Q GAIN WILD-TYPE | 524 | 243 | 211 |
Figure S365. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D39V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S366. Gene #39: '22q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
22Q GAIN MUTATED | 20 | 23 | 0 | 8 | 33 | 13 |
22Q GAIN WILD-TYPE | 269 | 140 | 90 | 282 | 150 | 47 |
Figure S366. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S367. Gene #39: '22q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
22Q GAIN MUTATED | 54 | 3 | 17 | 22 |
22Q GAIN WILD-TYPE | 251 | 209 | 252 | 253 |
Figure S367. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D39V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S368. Gene #39: '22q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
22Q GAIN MUTATED | 31 | 28 | 6 | 3 | 6 | 22 |
22Q GAIN WILD-TYPE | 263 | 124 | 239 | 137 | 90 | 112 |
Figure S368. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D39V10.png)
P value = 0.00038 (Fisher's exact test), Q value = 0.00066
Table S369. Gene #39: '22q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
22Q GAIN MUTATED | 13 | 25 | 6 | 4 | 6 |
22Q GAIN WILD-TYPE | 167 | 114 | 93 | 107 | 127 |
Figure S369. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D39V11.png)
P value = 0.00603 (Fisher's exact test), Q value = 0.0084
Table S370. Gene #39: '22q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
22Q GAIN MUTATED | 36 | 14 | 4 |
22Q GAIN WILD-TYPE | 269 | 233 | 106 |
Figure S370. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D39V12.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00014
Table S371. Gene #40: 'xp gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
XP GAIN MUTATED | 1 | 1 | 17 | 18 | 17 | 21 | 9 | 2 |
XP GAIN WILD-TYPE | 20 | 35 | 102 | 78 | 92 | 51 | 11 | 38 |
Figure S371. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D40V1.png)
P value = 0.00883 (Fisher's exact test), Q value = 0.012
Table S372. Gene #40: 'xp gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
XP GAIN MUTATED | 12 | 17 | 31 | 16 | 10 |
XP GAIN WILD-TYPE | 89 | 135 | 83 | 72 | 48 |
Figure S372. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D40V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S373. Gene #40: 'xp gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
XP GAIN MUTATED | 42 | 22 | 24 | 55 | 8 |
XP GAIN WILD-TYPE | 233 | 385 | 74 | 202 | 35 |
Figure S373. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D40V3.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S374. Gene #40: 'xp gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
XP GAIN MUTATED | 26 | 15 | 19 | 6 | 29 | 2 |
XP GAIN WILD-TYPE | 118 | 84 | 194 | 117 | 106 | 57 |
Figure S374. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D40V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S375. Gene #40: 'xp gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
XP GAIN MUTATED | 79 | 62 | 9 |
XP GAIN WILD-TYPE | 480 | 242 | 203 |
Figure S375. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D40V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S376. Gene #40: 'xp gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
XP GAIN MUTATED | 38 | 37 | 1 | 28 | 37 | 9 |
XP GAIN WILD-TYPE | 251 | 126 | 89 | 262 | 146 | 51 |
Figure S376. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S377. Gene #40: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
XP GAIN MUTATED | 64 | 7 | 28 | 45 |
XP GAIN WILD-TYPE | 241 | 205 | 241 | 230 |
Figure S377. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D40V9.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00023
Table S378. Gene #40: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
XP GAIN MUTATED | 46 | 26 | 13 | 18 | 13 | 28 |
XP GAIN WILD-TYPE | 248 | 126 | 232 | 122 | 83 | 106 |
Figure S378. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D40V10.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00027
Table S379. Gene #40: 'xp gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
XP GAIN MUTATED | 24 | 32 | 9 | 5 | 11 |
XP GAIN WILD-TYPE | 156 | 107 | 90 | 106 | 122 |
Figure S379. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D40V11.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.00078
Table S380. Gene #40: 'xp gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
XP GAIN MUTATED | 54 | 20 | 7 |
XP GAIN WILD-TYPE | 251 | 227 | 103 |
Figure S380. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D40V12.png)
P value = 8e-04 (Fisher's exact test), Q value = 0.0013
Table S381. Gene #41: 'xq gain' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
XQ GAIN MUTATED | 2 | 1 | 17 | 24 | 13 | 18 | 4 | 1 |
XQ GAIN WILD-TYPE | 19 | 35 | 102 | 72 | 96 | 54 | 16 | 39 |
Figure S381. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D41V1.png)
P value = 0.00229 (Fisher's exact test), Q value = 0.0035
Table S382. Gene #41: 'xq gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
XQ GAIN MUTATED | 11 | 15 | 26 | 22 | 6 |
XQ GAIN WILD-TYPE | 90 | 137 | 88 | 66 | 52 |
Figure S382. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D41V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S383. Gene #41: 'xq gain' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
XQ GAIN MUTATED | 41 | 17 | 20 | 50 | 8 |
XQ GAIN WILD-TYPE | 234 | 390 | 78 | 207 | 35 |
Figure S383. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #3: 'CN_CNMF'
![](D41V3.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00025
Table S384. Gene #41: 'xq gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
XQ GAIN MUTATED | 19 | 11 | 17 | 4 | 28 | 3 |
XQ GAIN WILD-TYPE | 125 | 88 | 196 | 119 | 107 | 56 |
Figure S384. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D41V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S385. Gene #41: 'xq gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
XQ GAIN MUTATED | 69 | 60 | 6 |
XQ GAIN WILD-TYPE | 490 | 244 | 206 |
Figure S385. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D41V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S386. Gene #41: 'xq gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
XQ GAIN MUTATED | 37 | 25 | 0 | 22 | 43 | 8 |
XQ GAIN WILD-TYPE | 252 | 138 | 90 | 268 | 140 | 52 |
Figure S386. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D41V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S387. Gene #41: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
XQ GAIN MUTATED | 63 | 6 | 25 | 35 |
XQ GAIN WILD-TYPE | 242 | 206 | 244 | 240 |
Figure S387. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D41V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S388. Gene #41: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
XQ GAIN MUTATED | 35 | 22 | 12 | 14 | 14 | 32 |
XQ GAIN WILD-TYPE | 259 | 130 | 233 | 126 | 82 | 102 |
Figure S388. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D41V10.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.00079
Table S389. Gene #41: 'xq gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
XQ GAIN MUTATED | 15 | 30 | 8 | 6 | 11 |
XQ GAIN WILD-TYPE | 165 | 109 | 91 | 105 | 122 |
Figure S389. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D41V11.png)
P value = 0.0252 (Fisher's exact test), Q value = 0.032
Table S390. Gene #41: 'xq gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
XQ GAIN MUTATED | 43 | 20 | 7 |
XQ GAIN WILD-TYPE | 262 | 227 | 103 |
Figure S390. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D41V12.png)
P value = 0.00121 (Fisher's exact test), Q value = 0.0019
Table S391. Gene #42: '1p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
1P LOSS MUTATED | 3 | 6 | 33 | 11 | 29 | 29 | 3 | 7 |
1P LOSS WILD-TYPE | 18 | 30 | 86 | 85 | 80 | 43 | 17 | 33 |
Figure S391. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D42V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S392. Gene #42: '1p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
1P LOSS MUTATED | 33 | 22 | 42 | 10 | 14 |
1P LOSS WILD-TYPE | 68 | 130 | 72 | 78 | 44 |
Figure S392. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D42V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S393. Gene #42: '1p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
1P LOSS MUTATED | 97 | 38 | 47 | 50 | 11 |
1P LOSS WILD-TYPE | 178 | 369 | 51 | 207 | 32 |
Figure S393. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D42V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S394. Gene #42: '1p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
1P LOSS MUTATED | 51 | 33 | 36 | 16 | 19 | 9 |
1P LOSS WILD-TYPE | 93 | 66 | 177 | 107 | 116 | 50 |
Figure S394. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D42V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S395. Gene #42: '1p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
1P LOSS MUTATED | 161 | 53 | 27 |
1P LOSS WILD-TYPE | 398 | 251 | 185 |
Figure S395. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D42V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S396. Gene #42: '1p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
1P LOSS MUTATED | 83 | 66 | 5 | 55 | 22 | 10 |
1P LOSS WILD-TYPE | 206 | 97 | 85 | 235 | 161 | 50 |
Figure S396. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 0.0057 (Fisher's exact test), Q value = 0.008
Table S397. Gene #42: '1p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
1P LOSS MUTATED | 65 | 31 | 73 | 69 |
1P LOSS WILD-TYPE | 240 | 181 | 196 | 206 |
Figure S397. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D42V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S398. Gene #42: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
1P LOSS MUTATED | 90 | 29 | 39 | 40 | 24 | 16 |
1P LOSS WILD-TYPE | 204 | 123 | 206 | 100 | 72 | 118 |
Figure S398. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D42V10.png)
P value = 0.00187 (Fisher's exact test), Q value = 0.0029
Table S399. Gene #42: '1p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
1P LOSS MUTATED | 46 | 17 | 23 | 11 | 27 |
1P LOSS WILD-TYPE | 134 | 122 | 76 | 100 | 106 |
Figure S399. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D42V11.png)
P value = 0.012 (Fisher's exact test), Q value = 0.016
Table S400. Gene #43: '1q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
1Q LOSS MUTATED | 11 | 2 | 8 | 4 | 2 |
1Q LOSS WILD-TYPE | 90 | 150 | 106 | 84 | 56 |
Figure S400. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D43V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S401. Gene #43: '1q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
1Q LOSS MUTATED | 22 | 5 | 4 | 17 | 4 |
1Q LOSS WILD-TYPE | 253 | 402 | 94 | 240 | 39 |
Figure S401. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D43V3.png)
P value = 0.00704 (Fisher's exact test), Q value = 0.0098
Table S402. Gene #43: '1q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
1Q LOSS MUTATED | 14 | 6 | 3 | 3 | 7 | 2 |
1Q LOSS WILD-TYPE | 130 | 93 | 210 | 120 | 128 | 57 |
Figure S402. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D43V4.png)
P value = 0.0141 (Fisher's exact test), Q value = 0.019
Table S403. Gene #43: '1q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
1Q LOSS MUTATED | 34 | 14 | 3 |
1Q LOSS WILD-TYPE | 525 | 290 | 209 |
Figure S403. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D43V7.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.034
Table S404. Gene #43: '1q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
1Q LOSS MUTATED | 24 | 7 | 5 | 4 | 5 | 5 |
1Q LOSS WILD-TYPE | 270 | 145 | 240 | 136 | 91 | 129 |
Figure S404. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D43V10.png)
P value = 0.00753 (Fisher's exact test), Q value = 0.01
Table S405. Gene #44: '2p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
2P LOSS MUTATED | 3 | 9 | 31 | 9 | 24 | 14 | 2 | 2 |
2P LOSS WILD-TYPE | 18 | 27 | 88 | 87 | 85 | 58 | 18 | 38 |
Figure S405. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D44V1.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.016
Table S406. Gene #44: '2p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
2P LOSS MUTATED | 28 | 21 | 25 | 9 | 11 |
2P LOSS WILD-TYPE | 73 | 131 | 89 | 79 | 47 |
Figure S406. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D44V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S407. Gene #44: '2p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
2P LOSS MUTATED | 83 | 31 | 24 | 35 | 9 |
2P LOSS WILD-TYPE | 192 | 376 | 74 | 222 | 34 |
Figure S407. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D44V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S408. Gene #44: '2p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
2P LOSS MUTATED | 39 | 17 | 37 | 7 | 13 | 5 |
2P LOSS WILD-TYPE | 105 | 82 | 176 | 116 | 122 | 54 |
Figure S408. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D44V4.png)
P value = 0.00167 (Fisher's exact test), Q value = 0.0026
Table S409. Gene #44: '2p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
2P LOSS MUTATED | 25 | 13 | 35 |
2P LOSS WILD-TYPE | 126 | 110 | 90 |
Figure S409. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D44V5.png)
P value = 0.00084 (Fisher's exact test), Q value = 0.0014
Table S410. Gene #44: '2p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
2P LOSS MUTATED | 18 | 3 | 8 | 7 | 31 | 6 |
2P LOSS WILD-TYPE | 46 | 43 | 82 | 45 | 85 | 25 |
Figure S410. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D44V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S411. Gene #44: '2p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
2P LOSS MUTATED | 133 | 28 | 19 |
2P LOSS WILD-TYPE | 426 | 276 | 193 |
Figure S411. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D44V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S412. Gene #44: '2p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
2P LOSS MUTATED | 76 | 42 | 8 | 36 | 16 | 2 |
2P LOSS WILD-TYPE | 213 | 121 | 82 | 254 | 167 | 58 |
Figure S412. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D44V8.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00057
Table S413. Gene #44: '2p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
2P LOSS MUTATED | 41 | 23 | 47 | 67 |
2P LOSS WILD-TYPE | 264 | 189 | 222 | 208 |
Figure S413. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D44V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S414. Gene #44: '2p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
2P LOSS MUTATED | 68 | 19 | 26 | 30 | 22 | 13 |
2P LOSS WILD-TYPE | 226 | 133 | 219 | 110 | 74 | 121 |
Figure S414. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D44V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S415. Gene #44: '2p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
2P LOSS MUTATED | 49 | 10 | 10 | 16 | 15 |
2P LOSS WILD-TYPE | 131 | 129 | 89 | 95 | 118 |
Figure S415. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D44V11.png)
P value = 0.0282 (Fisher's exact test), Q value = 0.036
Table S416. Gene #45: '2q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
2Q LOSS MUTATED | 28 | 21 | 31 | 16 | 11 |
2Q LOSS WILD-TYPE | 73 | 131 | 83 | 72 | 47 |
Figure S416. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D45V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S417. Gene #45: '2q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
2Q LOSS MUTATED | 89 | 34 | 26 | 50 | 12 |
2Q LOSS WILD-TYPE | 186 | 373 | 72 | 207 | 31 |
Figure S417. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D45V3.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S418. Gene #45: '2q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
2Q LOSS MUTATED | 45 | 17 | 37 | 11 | 24 | 5 |
2Q LOSS WILD-TYPE | 99 | 82 | 176 | 112 | 111 | 54 |
Figure S418. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D45V4.png)
P value = 0.00359 (Fisher's exact test), Q value = 0.0052
Table S419. Gene #45: '2q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
2Q LOSS MUTATED | 33 | 14 | 35 |
2Q LOSS WILD-TYPE | 118 | 109 | 90 |
Figure S419. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D45V5.png)
P value = 0.00572 (Fisher's exact test), Q value = 0.008
Table S420. Gene #45: '2q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
2Q LOSS MUTATED | 18 | 3 | 15 | 6 | 33 | 7 |
2Q LOSS WILD-TYPE | 46 | 43 | 75 | 46 | 83 | 24 |
Figure S420. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D45V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S421. Gene #45: '2q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
2Q LOSS MUTATED | 135 | 53 | 21 |
2Q LOSS WILD-TYPE | 424 | 251 | 191 |
Figure S421. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D45V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S422. Gene #45: '2q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
2Q LOSS MUTATED | 77 | 46 | 9 | 40 | 33 | 4 |
2Q LOSS WILD-TYPE | 212 | 117 | 81 | 250 | 150 | 56 |
Figure S422. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D45V8.png)
P value = 0.0033 (Fisher's exact test), Q value = 0.0048
Table S423. Gene #45: '2q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
2Q LOSS MUTATED | 62 | 26 | 49 | 70 |
2Q LOSS WILD-TYPE | 243 | 186 | 220 | 205 |
Figure S423. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D45V9.png)
P value = 0.00158 (Fisher's exact test), Q value = 0.0025
Table S424. Gene #45: '2q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
2Q LOSS MUTATED | 70 | 24 | 28 | 30 | 25 | 30 |
2Q LOSS WILD-TYPE | 224 | 128 | 217 | 110 | 71 | 104 |
Figure S424. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D45V10.png)
P value = 0.00025 (Fisher's exact test), Q value = 0.00045
Table S425. Gene #45: '2q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
2Q LOSS MUTATED | 53 | 22 | 11 | 18 | 16 |
2Q LOSS WILD-TYPE | 127 | 117 | 88 | 93 | 117 |
Figure S425. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D45V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S426. Gene #46: '3p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
3P LOSS MUTATED | 0 | 7 | 19 | 29 | 4 | 17 | 6 | 4 |
3P LOSS WILD-TYPE | 21 | 29 | 100 | 67 | 105 | 55 | 14 | 36 |
Figure S426. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D46V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S427. Gene #46: '3p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
3P LOSS MUTATED | 15 | 18 | 27 | 26 | 0 |
3P LOSS WILD-TYPE | 86 | 134 | 87 | 62 | 58 |
Figure S427. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D46V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S428. Gene #46: '3p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
3P LOSS MUTATED | 55 | 28 | 15 | 84 | 4 |
3P LOSS WILD-TYPE | 220 | 379 | 83 | 173 | 39 |
Figure S428. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D46V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S429. Gene #46: '3p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
3P LOSS MUTATED | 35 | 21 | 12 | 16 | 40 | 7 |
3P LOSS WILD-TYPE | 109 | 78 | 201 | 107 | 95 | 52 |
Figure S429. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D46V4.png)
P value = 0.00232 (Fisher's exact test), Q value = 0.0035
Table S430. Gene #46: '3p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
3P LOSS MUTATED | 41 | 16 | 16 |
3P LOSS WILD-TYPE | 110 | 107 | 109 |
Figure S430. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D46V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S431. Gene #46: '3p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
3P LOSS MUTATED | 2 | 3 | 31 | 10 | 20 | 7 |
3P LOSS WILD-TYPE | 62 | 43 | 59 | 42 | 96 | 24 |
Figure S431. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D46V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S432. Gene #46: '3p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
3P LOSS MUTATED | 73 | 92 | 20 |
3P LOSS WILD-TYPE | 486 | 212 | 192 |
Figure S432. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D46V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S433. Gene #46: '3p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
3P LOSS MUTATED | 31 | 43 | 5 | 36 | 55 | 15 |
3P LOSS WILD-TYPE | 258 | 120 | 85 | 254 | 128 | 45 |
Figure S433. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D46V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S434. Gene #46: '3p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
3P LOSS MUTATED | 87 | 20 | 26 | 47 |
3P LOSS WILD-TYPE | 218 | 192 | 243 | 228 |
Figure S434. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D46V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S435. Gene #46: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
3P LOSS MUTATED | 63 | 36 | 27 | 8 | 7 | 39 |
3P LOSS WILD-TYPE | 231 | 116 | 218 | 132 | 89 | 95 |
Figure S435. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D46V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S436. Gene #46: '3p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
3P LOSS MUTATED | 27 | 48 | 9 | 9 | 24 |
3P LOSS WILD-TYPE | 153 | 91 | 90 | 102 | 109 |
Figure S436. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D46V11.png)
P value = 0.00735 (Fisher's exact test), Q value = 0.01
Table S437. Gene #46: '3p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
3P LOSS MUTATED | 68 | 38 | 11 |
3P LOSS WILD-TYPE | 237 | 209 | 99 |
Figure S437. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D46V12.png)
P value = 0.00122 (Fisher's exact test), Q value = 0.002
Table S438. Gene #47: '3q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
3Q LOSS MUTATED | 0 | 3 | 13 | 14 | 2 | 11 | 4 | 1 |
3Q LOSS WILD-TYPE | 21 | 33 | 106 | 82 | 107 | 61 | 16 | 39 |
Figure S438. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D47V1.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00032
Table S439. Gene #47: '3q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
3Q LOSS MUTATED | 10 | 7 | 19 | 12 | 0 |
3Q LOSS WILD-TYPE | 91 | 145 | 95 | 76 | 58 |
Figure S439. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D47V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S440. Gene #47: '3q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
3Q LOSS MUTATED | 34 | 13 | 9 | 43 | 4 |
3Q LOSS WILD-TYPE | 241 | 394 | 89 | 214 | 39 |
Figure S440. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D47V3.png)
P value = 0.0011 (Fisher's exact test), Q value = 0.0018
Table S441. Gene #47: '3q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
3Q LOSS MUTATED | 21 | 12 | 10 | 7 | 21 | 3 |
3Q LOSS WILD-TYPE | 123 | 87 | 203 | 116 | 114 | 56 |
Figure S441. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D47V4.png)
P value = 0.0303 (Fisher's exact test), Q value = 0.038
Table S442. Gene #47: '3q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
3Q LOSS MUTATED | 1 | 4 | 16 | 5 | 11 | 4 |
3Q LOSS WILD-TYPE | 63 | 42 | 74 | 47 | 105 | 27 |
Figure S442. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D47V6.png)
P value = 0.00035 (Fisher's exact test), Q value = 0.00062
Table S443. Gene #47: '3q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
3Q LOSS MUTATED | 46 | 46 | 11 |
3Q LOSS WILD-TYPE | 513 | 258 | 201 |
Figure S443. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D47V7.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00039
Table S444. Gene #47: '3q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
3Q LOSS MUTATED | 21 | 28 | 3 | 18 | 24 | 9 |
3Q LOSS WILD-TYPE | 268 | 135 | 87 | 272 | 159 | 51 |
Figure S444. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D47V8.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.00054
Table S445. Gene #47: '3q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
3Q LOSS MUTATED | 42 | 10 | 15 | 32 |
3Q LOSS WILD-TYPE | 263 | 202 | 254 | 243 |
Figure S445. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D47V9.png)
P value = 0.00016 (Fisher's exact test), Q value = 3e-04
Table S446. Gene #47: '3q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
3Q LOSS MUTATED | 40 | 20 | 12 | 5 | 5 | 17 |
3Q LOSS WILD-TYPE | 254 | 132 | 233 | 135 | 91 | 117 |
Figure S446. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D47V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S447. Gene #48: '4p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
4P LOSS MUTATED | 4 | 7 | 25 | 60 | 22 | 41 | 8 | 7 |
4P LOSS WILD-TYPE | 17 | 29 | 94 | 36 | 87 | 31 | 12 | 33 |
Figure S447. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D48V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S448. Gene #48: '4p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
4P LOSS MUTATED | 24 | 28 | 57 | 54 | 11 |
4P LOSS WILD-TYPE | 77 | 124 | 57 | 34 | 47 |
Figure S448. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D48V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S449. Gene #48: '4p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
4P LOSS MUTATED | 78 | 54 | 45 | 165 | 11 |
4P LOSS WILD-TYPE | 197 | 353 | 53 | 92 | 32 |
Figure S449. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D48V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S450. Gene #48: '4p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
4P LOSS MUTATED | 40 | 31 | 43 | 33 | 90 | 6 |
4P LOSS WILD-TYPE | 104 | 68 | 170 | 90 | 45 | 53 |
Figure S450. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D48V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S451. Gene #48: '4p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
4P LOSS MUTATED | 79 | 26 | 36 |
4P LOSS WILD-TYPE | 72 | 97 | 89 |
Figure S451. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D48V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S452. Gene #48: '4p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
4P LOSS MUTATED | 18 | 10 | 53 | 18 | 29 | 13 |
4P LOSS WILD-TYPE | 46 | 36 | 37 | 34 | 87 | 18 |
Figure S452. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D48V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S453. Gene #48: '4p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
4P LOSS MUTATED | 141 | 183 | 28 |
4P LOSS WILD-TYPE | 418 | 121 | 184 |
Figure S453. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D48V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S454. Gene #48: '4p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
4P LOSS MUTATED | 67 | 69 | 9 | 55 | 120 | 32 |
4P LOSS WILD-TYPE | 222 | 94 | 81 | 235 | 63 | 28 |
Figure S454. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D48V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S455. Gene #48: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
4P LOSS MUTATED | 168 | 39 | 43 | 92 |
4P LOSS WILD-TYPE | 137 | 173 | 226 | 183 |
Figure S455. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D48V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S456. Gene #48: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
4P LOSS MUTATED | 91 | 70 | 30 | 45 | 17 | 89 |
4P LOSS WILD-TYPE | 203 | 82 | 215 | 95 | 79 | 45 |
Figure S456. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D48V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S457. Gene #48: '4p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
4P LOSS MUTATED | 49 | 93 | 19 | 27 | 25 |
4P LOSS WILD-TYPE | 131 | 46 | 80 | 84 | 108 |
Figure S457. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D48V11.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S458. Gene #48: '4p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
4P LOSS MUTATED | 124 | 56 | 33 |
4P LOSS WILD-TYPE | 181 | 191 | 77 |
Figure S458. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S459. Gene #49: '4q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
4Q LOSS MUTATED | 4 | 7 | 24 | 46 | 21 | 36 | 7 | 7 |
4Q LOSS WILD-TYPE | 17 | 29 | 95 | 50 | 88 | 36 | 13 | 33 |
Figure S459. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D49V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S460. Gene #49: '4q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
4Q LOSS MUTATED | 24 | 26 | 50 | 41 | 11 |
4Q LOSS WILD-TYPE | 77 | 126 | 64 | 47 | 47 |
Figure S460. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D49V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S461. Gene #49: '4q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
4Q LOSS MUTATED | 69 | 50 | 45 | 137 | 11 |
4Q LOSS WILD-TYPE | 206 | 357 | 53 | 120 | 32 |
Figure S461. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D49V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S462. Gene #49: '4q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
4Q LOSS MUTATED | 37 | 28 | 42 | 33 | 73 | 5 |
4Q LOSS WILD-TYPE | 107 | 71 | 171 | 90 | 62 | 54 |
Figure S462. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D49V4.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00032
Table S463. Gene #49: '4q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
4Q LOSS MUTATED | 66 | 26 | 32 |
4Q LOSS WILD-TYPE | 85 | 97 | 93 |
Figure S463. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D49V5.png)
P value = 0.00267 (Fisher's exact test), Q value = 0.004
Table S464. Gene #49: '4q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
4Q LOSS MUTATED | 16 | 10 | 44 | 17 | 28 | 9 |
4Q LOSS WILD-TYPE | 48 | 36 | 46 | 35 | 88 | 22 |
Figure S464. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D49V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S465. Gene #49: '4q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
4Q LOSS MUTATED | 135 | 151 | 25 |
4Q LOSS WILD-TYPE | 424 | 153 | 187 |
Figure S465. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D49V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S466. Gene #49: '4q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
4Q LOSS MUTATED | 64 | 66 | 9 | 51 | 94 | 27 |
4Q LOSS WILD-TYPE | 225 | 97 | 81 | 239 | 89 | 33 |
Figure S466. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D49V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S467. Gene #49: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
4Q LOSS MUTATED | 133 | 36 | 46 | 86 |
4Q LOSS WILD-TYPE | 172 | 176 | 223 | 189 |
Figure S467. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D49V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S468. Gene #49: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
4Q LOSS MUTATED | 82 | 62 | 29 | 43 | 17 | 68 |
4Q LOSS WILD-TYPE | 212 | 90 | 216 | 97 | 79 | 66 |
Figure S468. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D49V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S469. Gene #49: '4q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
4Q LOSS MUTATED | 46 | 69 | 19 | 27 | 21 |
4Q LOSS WILD-TYPE | 134 | 70 | 80 | 84 | 112 |
Figure S469. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D49V11.png)
P value = 0.00808 (Fisher's exact test), Q value = 0.011
Table S470. Gene #49: '4q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
4Q LOSS MUTATED | 98 | 51 | 33 |
4Q LOSS WILD-TYPE | 207 | 196 | 77 |
Figure S470. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D49V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S471. Gene #50: '5p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
5P LOSS MUTATED | 1 | 1 | 8 | 40 | 5 | 11 | 1 | 2 |
5P LOSS WILD-TYPE | 20 | 35 | 111 | 56 | 104 | 61 | 19 | 38 |
Figure S471. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D50V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S472. Gene #50: '5p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
5P LOSS MUTATED | 9 | 5 | 17 | 37 | 1 |
5P LOSS WILD-TYPE | 92 | 147 | 97 | 51 | 57 |
Figure S472. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D50V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S473. Gene #50: '5p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
5P LOSS MUTATED | 20 | 14 | 4 | 96 | 6 |
5P LOSS WILD-TYPE | 255 | 393 | 94 | 161 | 37 |
Figure S473. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D50V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S474. Gene #50: '5p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
5P LOSS MUTATED | 14 | 8 | 4 | 18 | 53 | 2 |
5P LOSS WILD-TYPE | 130 | 91 | 209 | 105 | 82 | 57 |
Figure S474. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D50V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S475. Gene #50: '5p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
5P LOSS MUTATED | 43 | 10 | 8 |
5P LOSS WILD-TYPE | 108 | 113 | 117 |
Figure S475. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D50V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S476. Gene #50: '5p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
5P LOSS MUTATED | 1 | 1 | 38 | 6 | 12 | 3 |
5P LOSS WILD-TYPE | 63 | 45 | 52 | 46 | 104 | 28 |
Figure S476. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D50V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S477. Gene #50: '5p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
5P LOSS MUTATED | 40 | 92 | 7 |
5P LOSS WILD-TYPE | 519 | 212 | 205 |
Figure S477. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D50V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S478. Gene #50: '5p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
5P LOSS MUTATED | 15 | 25 | 1 | 12 | 78 | 8 |
5P LOSS WILD-TYPE | 274 | 138 | 89 | 278 | 105 | 52 |
Figure S478. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D50V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S479. Gene #50: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
5P LOSS MUTATED | 86 | 14 | 12 | 25 |
5P LOSS WILD-TYPE | 219 | 198 | 257 | 250 |
Figure S479. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D50V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S480. Gene #50: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
5P LOSS MUTATED | 34 | 28 | 7 | 3 | 4 | 61 |
5P LOSS WILD-TYPE | 260 | 124 | 238 | 137 | 92 | 73 |
Figure S480. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D50V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S481. Gene #50: '5p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
5P LOSS MUTATED | 12 | 56 | 5 | 4 | 9 |
5P LOSS WILD-TYPE | 168 | 83 | 94 | 107 | 124 |
Figure S481. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D50V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S482. Gene #50: '5p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
5P LOSS MUTATED | 70 | 12 | 4 |
5P LOSS WILD-TYPE | 235 | 235 | 106 |
Figure S482. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D50V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S483. Gene #51: '5q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
5Q LOSS MUTATED | 2 | 3 | 14 | 60 | 4 | 21 | 5 | 3 |
5Q LOSS WILD-TYPE | 19 | 33 | 105 | 36 | 105 | 51 | 15 | 37 |
Figure S483. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D51V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S484. Gene #51: '5q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
5Q LOSS MUTATED | 14 | 10 | 32 | 55 | 1 |
5Q LOSS WILD-TYPE | 87 | 142 | 82 | 33 | 57 |
Figure S484. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D51V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S485. Gene #51: '5q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
5Q LOSS MUTATED | 32 | 20 | 5 | 162 | 9 |
5Q LOSS WILD-TYPE | 243 | 387 | 93 | 95 | 34 |
Figure S485. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D51V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S486. Gene #51: '5q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
5Q LOSS MUTATED | 23 | 11 | 6 | 30 | 88 | 4 |
5Q LOSS WILD-TYPE | 121 | 88 | 207 | 93 | 47 | 55 |
Figure S486. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D51V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S487. Gene #51: '5q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
5Q LOSS MUTATED | 68 | 19 | 9 |
5Q LOSS WILD-TYPE | 83 | 104 | 116 |
Figure S487. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D51V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S488. Gene #51: '5q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
5Q LOSS MUTATED | 3 | 3 | 55 | 10 | 19 | 6 |
5Q LOSS WILD-TYPE | 61 | 43 | 35 | 42 | 97 | 25 |
Figure S488. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D51V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S489. Gene #51: '5q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
5Q LOSS MUTATED | 59 | 156 | 12 |
5Q LOSS WILD-TYPE | 500 | 148 | 200 |
Figure S489. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D51V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S490. Gene #51: '5q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
5Q LOSS MUTATED | 25 | 38 | 1 | 24 | 119 | 20 |
5Q LOSS WILD-TYPE | 264 | 125 | 89 | 266 | 64 | 40 |
Figure S490. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D51V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S491. Gene #51: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
5Q LOSS MUTATED | 150 | 18 | 19 | 36 |
5Q LOSS WILD-TYPE | 155 | 194 | 250 | 239 |
Figure S491. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D51V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S492. Gene #51: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
5Q LOSS MUTATED | 51 | 58 | 11 | 4 | 5 | 94 |
5Q LOSS WILD-TYPE | 243 | 94 | 234 | 136 | 91 | 40 |
Figure S492. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D51V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S493. Gene #51: '5q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
5Q LOSS MUTATED | 16 | 88 | 13 | 9 | 14 |
5Q LOSS WILD-TYPE | 164 | 51 | 86 | 102 | 119 |
Figure S493. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D51V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S494. Gene #51: '5q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
5Q LOSS MUTATED | 107 | 25 | 8 |
5Q LOSS WILD-TYPE | 198 | 222 | 102 |
Figure S494. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D51V12.png)
P value = 0.0235 (Fisher's exact test), Q value = 0.03
Table S495. Gene #52: '6p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
6P LOSS MUTATED | 5 | 10 | 30 | 9 | 19 | 10 | 1 | 9 |
6P LOSS WILD-TYPE | 16 | 26 | 89 | 87 | 90 | 62 | 19 | 31 |
Figure S495. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D52V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S496. Gene #52: '6p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
6P LOSS MUTATED | 88 | 46 | 15 | 29 | 9 |
6P LOSS WILD-TYPE | 187 | 361 | 83 | 228 | 34 |
Figure S496. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D52V3.png)
P value = 0.00759 (Fisher's exact test), Q value = 0.01
Table S497. Gene #52: '6p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
6P LOSS MUTATED | 40 | 14 | 30 | 19 | 18 | 6 |
6P LOSS WILD-TYPE | 104 | 85 | 183 | 104 | 117 | 53 |
Figure S497. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D52V4.png)
P value = 0.00115 (Fisher's exact test), Q value = 0.0019
Table S498. Gene #52: '6p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
6P LOSS MUTATED | 119 | 38 | 29 |
6P LOSS WILD-TYPE | 440 | 266 | 183 |
Figure S498. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D52V7.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.014
Table S499. Gene #52: '6p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
6P LOSS MUTATED | 68 | 30 | 14 | 45 | 19 | 10 |
6P LOSS WILD-TYPE | 221 | 133 | 76 | 245 | 164 | 50 |
Figure S499. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D52V8.png)
P value = 0.0339 (Fisher's exact test), Q value = 0.042
Table S500. Gene #52: '6p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
6P LOSS MUTATED | 63 | 21 | 36 | 29 | 21 | 15 |
6P LOSS WILD-TYPE | 231 | 131 | 209 | 111 | 75 | 119 |
Figure S500. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D52V10.png)
P value = 0.00703 (Fisher's exact test), Q value = 0.0098
Table S501. Gene #52: '6p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
6P LOSS MUTATED | 45 | 15 | 12 | 20 | 28 |
6P LOSS WILD-TYPE | 135 | 124 | 87 | 91 | 105 |
Figure S501. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D52V11.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00037
Table S502. Gene #53: '6q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
6Q LOSS MUTATED | 6 | 13 | 44 | 13 | 23 | 14 | 1 | 14 |
6Q LOSS WILD-TYPE | 15 | 23 | 75 | 83 | 86 | 58 | 19 | 26 |
Figure S502. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D53V1.png)
P value = 0.0135 (Fisher's exact test), Q value = 0.018
Table S503. Gene #53: '6q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
6Q LOSS MUTATED | 36 | 42 | 24 | 13 | 13 |
6Q LOSS WILD-TYPE | 65 | 110 | 90 | 75 | 45 |
Figure S503. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D53V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S504. Gene #53: '6q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
6Q LOSS MUTATED | 124 | 78 | 21 | 37 | 16 |
6Q LOSS WILD-TYPE | 151 | 329 | 77 | 220 | 27 |
Figure S504. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D53V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S505. Gene #53: '6q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
6Q LOSS MUTATED | 61 | 22 | 58 | 21 | 24 | 12 |
6Q LOSS WILD-TYPE | 83 | 77 | 155 | 102 | 111 | 47 |
Figure S505. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D53V4.png)
P value = 0.00101 (Fisher's exact test), Q value = 0.0017
Table S506. Gene #53: '6q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
6Q LOSS MUTATED | 167 | 56 | 52 |
6Q LOSS WILD-TYPE | 392 | 248 | 160 |
Figure S506. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D53V7.png)
P value = 0.00088 (Fisher's exact test), Q value = 0.0015
Table S507. Gene #53: '6q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
6Q LOSS MUTATED | 93 | 42 | 22 | 75 | 26 | 17 |
6Q LOSS WILD-TYPE | 196 | 121 | 68 | 215 | 157 | 43 |
Figure S507. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D53V8.png)
P value = 0.00056 (Fisher's exact test), Q value = 0.00095
Table S508. Gene #53: '6q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
6Q LOSS MUTATED | 86 | 29 | 60 | 48 | 31 | 20 |
6Q LOSS WILD-TYPE | 208 | 123 | 185 | 92 | 65 | 114 |
Figure S508. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D53V10.png)
P value = 0.00997 (Fisher's exact test), Q value = 0.013
Table S509. Gene #53: '6q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
6Q LOSS MUTATED | 56 | 22 | 21 | 33 | 39 |
6Q LOSS WILD-TYPE | 124 | 117 | 78 | 78 | 94 |
Figure S509. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D53V11.png)
P value = 0.0198 (Fisher's exact test), Q value = 0.026
Table S510. Gene #54: '7p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
7P LOSS MUTATED | 3 | 3 | 20 | 14 | 4 | 9 | 4 | 2 |
7P LOSS WILD-TYPE | 18 | 33 | 99 | 82 | 105 | 63 | 16 | 38 |
Figure S510. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D54V1.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.0019
Table S511. Gene #54: '7p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
7P LOSS MUTATED | 16 | 7 | 21 | 12 | 3 |
7P LOSS WILD-TYPE | 85 | 145 | 93 | 76 | 55 |
Figure S511. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D54V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S512. Gene #54: '7p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
7P LOSS MUTATED | 40 | 10 | 6 | 53 | 3 |
7P LOSS WILD-TYPE | 235 | 397 | 92 | 204 | 40 |
Figure S512. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D54V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S513. Gene #54: '7p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
7P LOSS MUTATED | 19 | 9 | 10 | 6 | 26 | 1 |
7P LOSS WILD-TYPE | 125 | 90 | 203 | 117 | 109 | 58 |
Figure S513. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D54V4.png)
P value = 0.0453 (Fisher's exact test), Q value = 0.055
Table S514. Gene #54: '7p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
7P LOSS MUTATED | 4 | 3 | 15 | 2 | 17 | 1 |
7P LOSS WILD-TYPE | 60 | 43 | 75 | 50 | 99 | 30 |
Figure S514. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D54V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S515. Gene #54: '7p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
7P LOSS MUTATED | 53 | 52 | 6 |
7P LOSS WILD-TYPE | 506 | 252 | 206 |
Figure S515. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D54V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S516. Gene #54: '7p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
7P LOSS MUTATED | 31 | 25 | 0 | 19 | 31 | 5 |
7P LOSS WILD-TYPE | 258 | 138 | 90 | 271 | 152 | 55 |
Figure S516. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D54V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S517. Gene #54: '7p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
7P LOSS MUTATED | 56 | 4 | 26 | 24 |
7P LOSS WILD-TYPE | 249 | 208 | 243 | 251 |
Figure S517. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D54V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S518. Gene #54: '7p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
7P LOSS MUTATED | 41 | 22 | 7 | 6 | 8 | 26 |
7P LOSS WILD-TYPE | 253 | 130 | 238 | 134 | 88 | 108 |
Figure S518. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D54V10.png)
P value = 0.00066 (Fisher's exact test), Q value = 0.0011
Table S519. Gene #54: '7p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
7P LOSS MUTATED | 18 | 25 | 8 | 3 | 8 |
7P LOSS WILD-TYPE | 162 | 114 | 91 | 108 | 125 |
Figure S519. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D54V11.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.00052
Table S520. Gene #54: '7p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
7P LOSS MUTATED | 44 | 13 | 5 |
7P LOSS WILD-TYPE | 261 | 234 | 105 |
Figure S520. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D54V12.png)
P value = 0.0365 (Fisher's exact test), Q value = 0.045
Table S521. Gene #55: '7q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
7Q LOSS MUTATED | 5 | 4 | 18 | 7 | 8 | 14 | 5 | 4 |
7Q LOSS WILD-TYPE | 16 | 32 | 101 | 89 | 101 | 58 | 15 | 36 |
Figure S521. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D55V1.png)
P value = 0.0016 (Fisher's exact test), Q value = 0.0025
Table S522. Gene #55: '7q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
7Q LOSS MUTATED | 14 | 12 | 27 | 6 | 6 |
7Q LOSS WILD-TYPE | 87 | 140 | 87 | 82 | 52 |
Figure S522. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D55V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S523. Gene #55: '7q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
7Q LOSS MUTATED | 47 | 18 | 11 | 41 | 3 |
7Q LOSS WILD-TYPE | 228 | 389 | 87 | 216 | 40 |
Figure S523. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D55V3.png)
P value = 6e-04 (Fisher's exact test), Q value = 0.001
Table S524. Gene #55: '7q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
7Q LOSS MUTATED | 74 | 36 | 9 |
7Q LOSS WILD-TYPE | 485 | 268 | 203 |
Figure S524. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D55V7.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.00079
Table S525. Gene #55: '7q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
7Q LOSS MUTATED | 38 | 31 | 2 | 24 | 17 | 7 |
7Q LOSS WILD-TYPE | 251 | 132 | 88 | 266 | 166 | 53 |
Figure S525. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D55V8.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00018
Table S526. Gene #55: '7q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
7Q LOSS MUTATED | 47 | 7 | 28 | 36 |
7Q LOSS WILD-TYPE | 258 | 205 | 241 | 239 |
Figure S526. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D55V9.png)
P value = 5e-05 (Fisher's exact test), Q value = 1e-04
Table S527. Gene #55: '7q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
7Q LOSS MUTATED | 49 | 24 | 10 | 10 | 12 | 13 |
7Q LOSS WILD-TYPE | 245 | 128 | 235 | 130 | 84 | 121 |
Figure S527. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D55V10.png)
P value = 0.0259 (Fisher's exact test), Q value = 0.033
Table S528. Gene #55: '7q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
7Q LOSS MUTATED | 26 | 17 | 9 | 5 | 8 |
7Q LOSS WILD-TYPE | 154 | 122 | 90 | 106 | 125 |
Figure S528. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D55V11.png)
P value = 0.00414 (Fisher's exact test), Q value = 0.006
Table S529. Gene #55: '7q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
7Q LOSS MUTATED | 41 | 13 | 11 |
7Q LOSS WILD-TYPE | 264 | 234 | 99 |
Figure S529. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S530. Gene #56: '8p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
8P LOSS MUTATED | 5 | 10 | 56 | 45 | 22 | 37 | 11 | 17 |
8P LOSS WILD-TYPE | 16 | 26 | 63 | 51 | 87 | 35 | 9 | 23 |
Figure S530. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D56V1.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00018
Table S531. Gene #56: '8p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
8P LOSS MUTATED | 48 | 45 | 58 | 39 | 13 |
8P LOSS WILD-TYPE | 53 | 107 | 56 | 49 | 45 |
Figure S531. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D56V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S532. Gene #56: '8p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
8P LOSS MUTATED | 134 | 98 | 19 | 133 | 15 |
8P LOSS WILD-TYPE | 141 | 309 | 79 | 124 | 28 |
Figure S532. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D56V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S533. Gene #56: '8p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
8P LOSS MUTATED | 74 | 37 | 50 | 44 | 57 | 11 |
8P LOSS WILD-TYPE | 70 | 62 | 163 | 79 | 78 | 48 |
Figure S533. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D56V4.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00057
Table S534. Gene #56: '8p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
8P LOSS MUTATED | 11 | 17 | 40 | 28 | 55 | 15 |
8P LOSS WILD-TYPE | 53 | 29 | 50 | 24 | 61 | 16 |
Figure S534. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D56V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S535. Gene #56: '8p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
8P LOSS MUTATED | 199 | 142 | 55 |
8P LOSS WILD-TYPE | 360 | 162 | 157 |
Figure S535. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D56V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S536. Gene #56: '8p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
8P LOSS MUTATED | 98 | 84 | 18 | 88 | 74 | 34 |
8P LOSS WILD-TYPE | 191 | 79 | 72 | 202 | 109 | 26 |
Figure S536. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D56V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S537. Gene #56: '8p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
8P LOSS MUTATED | 142 | 57 | 84 | 110 |
8P LOSS WILD-TYPE | 163 | 155 | 185 | 165 |
Figure S537. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D56V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S538. Gene #56: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
8P LOSS MUTATED | 124 | 73 | 67 | 40 | 30 | 59 |
8P LOSS WILD-TYPE | 170 | 79 | 178 | 100 | 66 | 75 |
Figure S538. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D56V10.png)
P value = 0.00128 (Fisher's exact test), Q value = 0.002
Table S539. Gene #56: '8p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
8P LOSS MUTATED | 77 | 61 | 34 | 26 | 39 |
8P LOSS WILD-TYPE | 103 | 78 | 65 | 85 | 94 |
Figure S539. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D56V11.png)
P value = 0.00078 (Fisher's exact test), Q value = 0.0013
Table S540. Gene #56: '8p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
8P LOSS MUTATED | 131 | 78 | 28 |
8P LOSS WILD-TYPE | 174 | 169 | 82 |
Figure S540. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V12.png)
P value = 0.00762 (Fisher's exact test), Q value = 0.011
Table S541. Gene #57: '8q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
8Q LOSS MUTATED | 33 | 20 | 11 | 26 | 3 |
8Q LOSS WILD-TYPE | 242 | 387 | 87 | 231 | 40 |
Figure S541. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D57V3.png)
P value = 0.0108 (Fisher's exact test), Q value = 0.014
Table S542. Gene #57: '8q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
8Q LOSS MUTATED | 21 | 11 | 9 | 10 | 12 | 2 |
8Q LOSS WILD-TYPE | 123 | 88 | 204 | 113 | 123 | 57 |
Figure S542. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D57V4.png)
P value = 0.0103 (Fisher's exact test), Q value = 0.014
Table S543. Gene #57: '8q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
8Q LOSS MUTATED | 54 | 31 | 8 |
8Q LOSS WILD-TYPE | 505 | 273 | 204 |
Figure S543. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D57V7.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S544. Gene #58: '9p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
9P LOSS MUTATED | 7 | 10 | 53 | 30 | 18 | 33 | 10 | 6 |
9P LOSS WILD-TYPE | 14 | 26 | 66 | 66 | 91 | 39 | 10 | 34 |
Figure S544. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D58V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S545. Gene #58: '9p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
9P LOSS MUTATED | 43 | 31 | 59 | 25 | 9 |
9P LOSS WILD-TYPE | 58 | 121 | 55 | 63 | 49 |
Figure S545. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D58V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S546. Gene #58: '9p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
9P LOSS MUTATED | 149 | 42 | 16 | 97 | 9 |
9P LOSS WILD-TYPE | 126 | 365 | 82 | 160 | 34 |
Figure S546. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D58V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S547. Gene #58: '9p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
9P LOSS MUTATED | 71 | 36 | 24 | 21 | 47 | 9 |
9P LOSS WILD-TYPE | 73 | 63 | 189 | 102 | 88 | 50 |
Figure S547. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D58V4.png)
P value = 0.00255 (Fisher's exact test), Q value = 0.0038
Table S548. Gene #58: '9p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
9P LOSS MUTATED | 67 | 35 | 33 |
9P LOSS WILD-TYPE | 84 | 88 | 92 |
Figure S548. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D58V5.png)
P value = 0.0405 (Fisher's exact test), Q value = 0.05
Table S549. Gene #58: '9p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
9P LOSS MUTATED | 13 | 14 | 32 | 14 | 50 | 12 |
9P LOSS WILD-TYPE | 51 | 32 | 58 | 38 | 66 | 19 |
Figure S549. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D58V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S550. Gene #58: '9p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
9P LOSS MUTATED | 180 | 103 | 28 |
9P LOSS WILD-TYPE | 379 | 201 | 184 |
Figure S550. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D58V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S551. Gene #58: '9p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
9P LOSS MUTATED | 96 | 76 | 5 | 59 | 50 | 25 |
9P LOSS WILD-TYPE | 193 | 87 | 85 | 231 | 133 | 35 |
Figure S551. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D58V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S552. Gene #58: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
9P LOSS MUTATED | 117 | 29 | 61 | 100 |
9P LOSS WILD-TYPE | 188 | 183 | 208 | 175 |
Figure S552. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D58V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S553. Gene #58: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
9P LOSS MUTATED | 124 | 67 | 29 | 30 | 21 | 36 |
9P LOSS WILD-TYPE | 170 | 85 | 216 | 110 | 75 | 98 |
Figure S553. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D58V10.png)
P value = 5e-05 (Fisher's exact test), Q value = 1e-04
Table S554. Gene #58: '9p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
9P LOSS MUTATED | 65 | 52 | 21 | 19 | 28 |
9P LOSS WILD-TYPE | 115 | 87 | 78 | 92 | 105 |
Figure S554. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D58V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S555. Gene #58: '9p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
9P LOSS MUTATED | 119 | 48 | 18 |
9P LOSS WILD-TYPE | 186 | 199 | 92 |
Figure S555. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V12.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00025
Table S556. Gene #59: '9q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
9Q LOSS MUTATED | 7 | 5 | 41 | 41 | 19 | 23 | 8 | 5 |
9Q LOSS WILD-TYPE | 14 | 31 | 78 | 55 | 90 | 49 | 12 | 35 |
Figure S556. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D59V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S557. Gene #59: '9q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
9Q LOSS MUTATED | 36 | 23 | 47 | 35 | 8 |
9Q LOSS WILD-TYPE | 65 | 129 | 67 | 53 | 50 |
Figure S557. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D59V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S558. Gene #59: '9q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
9Q LOSS MUTATED | 115 | 37 | 15 | 105 | 11 |
9Q LOSS WILD-TYPE | 160 | 370 | 83 | 152 | 32 |
Figure S558. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D59V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S559. Gene #59: '9q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
9Q LOSS MUTATED | 58 | 26 | 24 | 21 | 56 | 5 |
9Q LOSS WILD-TYPE | 86 | 73 | 189 | 102 | 79 | 54 |
Figure S559. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D59V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S560. Gene #59: '9q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
9Q LOSS MUTATED | 67 | 27 | 24 |
9Q LOSS WILD-TYPE | 84 | 96 | 101 |
Figure S560. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D59V5.png)
P value = 0.00151 (Fisher's exact test), Q value = 0.0024
Table S561. Gene #59: '9q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
9Q LOSS MUTATED | 11 | 10 | 40 | 10 | 35 | 12 |
9Q LOSS WILD-TYPE | 53 | 36 | 50 | 42 | 81 | 19 |
Figure S561. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D59V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S562. Gene #59: '9q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
9Q LOSS MUTATED | 148 | 113 | 20 |
9Q LOSS WILD-TYPE | 411 | 191 | 192 |
Figure S562. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D59V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S563. Gene #59: '9q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
9Q LOSS MUTATED | 81 | 60 | 3 | 49 | 68 | 20 |
9Q LOSS WILD-TYPE | 208 | 103 | 87 | 241 | 115 | 40 |
Figure S563. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D59V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S564. Gene #59: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
9Q LOSS MUTATED | 121 | 24 | 52 | 77 |
9Q LOSS WILD-TYPE | 184 | 188 | 217 | 198 |
Figure S564. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D59V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S565. Gene #59: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
9Q LOSS MUTATED | 102 | 58 | 20 | 21 | 20 | 53 |
9Q LOSS WILD-TYPE | 192 | 94 | 225 | 119 | 76 | 81 |
Figure S565. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D59V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S566. Gene #59: '9q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
9Q LOSS MUTATED | 51 | 57 | 19 | 15 | 24 |
9Q LOSS WILD-TYPE | 129 | 82 | 80 | 96 | 109 |
Figure S566. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D59V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S567. Gene #59: '9q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
9Q LOSS MUTATED | 111 | 41 | 14 |
9Q LOSS WILD-TYPE | 194 | 206 | 96 |
Figure S567. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S568. Gene #60: '10p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
10P LOSS MUTATED | 61 | 30 | 19 | 53 | 10 |
10P LOSS WILD-TYPE | 214 | 377 | 79 | 204 | 33 |
Figure S568. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D60V3.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S569. Gene #60: '10p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
10P LOSS MUTATED | 35 | 17 | 25 | 9 | 35 | 8 |
10P LOSS WILD-TYPE | 109 | 82 | 188 | 114 | 100 | 51 |
Figure S569. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D60V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S570. Gene #60: '10p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
10P LOSS MUTATED | 97 | 63 | 13 |
10P LOSS WILD-TYPE | 462 | 241 | 199 |
Figure S570. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D60V7.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S571. Gene #60: '10p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
10P LOSS MUTATED | 52 | 41 | 4 | 33 | 32 | 11 |
10P LOSS WILD-TYPE | 237 | 122 | 86 | 257 | 151 | 49 |
Figure S571. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D60V8.png)
P value = 0.00189 (Fisher's exact test), Q value = 0.0029
Table S572. Gene #60: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
10P LOSS MUTATED | 58 | 18 | 40 | 54 |
10P LOSS WILD-TYPE | 247 | 194 | 229 | 221 |
Figure S572. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D60V9.png)
P value = 0.00094 (Fisher's exact test), Q value = 0.0016
Table S573. Gene #60: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
10P LOSS MUTATED | 56 | 34 | 20 | 21 | 14 | 25 |
10P LOSS WILD-TYPE | 238 | 118 | 225 | 119 | 82 | 109 |
Figure S573. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D60V10.png)
P value = 0.00292 (Fisher's exact test), Q value = 0.0043
Table S574. Gene #61: '10q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
10Q LOSS MUTATED | 6 | 5 | 28 | 31 | 14 | 16 | 3 | 2 |
10Q LOSS WILD-TYPE | 15 | 31 | 91 | 65 | 95 | 56 | 17 | 38 |
Figure S574. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D61V1.png)
P value = 0.00911 (Fisher's exact test), Q value = 0.012
Table S575. Gene #61: '10q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
10Q LOSS MUTATED | 21 | 21 | 30 | 26 | 7 |
10Q LOSS WILD-TYPE | 80 | 131 | 84 | 62 | 51 |
Figure S575. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D61V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S576. Gene #61: '10q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
10Q LOSS MUTATED | 74 | 34 | 19 | 89 | 13 |
10Q LOSS WILD-TYPE | 201 | 373 | 79 | 168 | 30 |
Figure S576. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D61V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S577. Gene #61: '10q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
10Q LOSS MUTATED | 50 | 22 | 26 | 14 | 55 | 7 |
10Q LOSS WILD-TYPE | 94 | 77 | 187 | 109 | 80 | 52 |
Figure S577. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D61V4.png)
P value = 0.00167 (Fisher's exact test), Q value = 0.0026
Table S578. Gene #61: '10q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
10Q LOSS MUTATED | 47 | 20 | 19 |
10Q LOSS WILD-TYPE | 104 | 103 | 106 |
Figure S578. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D61V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S579. Gene #61: '10q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
10Q LOSS MUTATED | 114 | 100 | 15 |
10Q LOSS WILD-TYPE | 445 | 204 | 197 |
Figure S579. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D61V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S580. Gene #61: '10q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
10Q LOSS MUTATED | 58 | 54 | 4 | 39 | 60 | 14 |
10Q LOSS WILD-TYPE | 231 | 109 | 86 | 251 | 123 | 46 |
Figure S580. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D61V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S581. Gene #61: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
10Q LOSS MUTATED | 93 | 25 | 42 | 64 |
10Q LOSS WILD-TYPE | 212 | 187 | 227 | 211 |
Figure S581. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D61V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S582. Gene #61: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
10Q LOSS MUTATED | 74 | 48 | 28 | 17 | 15 | 42 |
10Q LOSS WILD-TYPE | 220 | 104 | 217 | 123 | 81 | 92 |
Figure S582. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D61V10.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00018
Table S583. Gene #61: '10q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
10Q LOSS MUTATED | 47 | 45 | 17 | 10 | 28 |
10Q LOSS WILD-TYPE | 133 | 94 | 82 | 101 | 105 |
Figure S583. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D61V11.png)
P value = 0.00978 (Fisher's exact test), Q value = 0.013
Table S584. Gene #61: '10q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
10Q LOSS MUTATED | 83 | 48 | 16 |
10Q LOSS WILD-TYPE | 222 | 199 | 94 |
Figure S584. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D61V12.png)
P value = 0.00384 (Fisher's exact test), Q value = 0.0055
Table S585. Gene #62: '11p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
11P LOSS MUTATED | 2 | 10 | 42 | 28 | 18 | 28 | 6 | 7 |
11P LOSS WILD-TYPE | 19 | 26 | 77 | 68 | 91 | 44 | 14 | 33 |
Figure S585. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D62V1.png)
P value = 0.0157 (Fisher's exact test), Q value = 0.021
Table S586. Gene #62: '11p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
11P LOSS MUTATED | 34 | 33 | 40 | 25 | 9 |
11P LOSS WILD-TYPE | 67 | 119 | 74 | 63 | 49 |
Figure S586. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D62V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S587. Gene #62: '11p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
11P LOSS MUTATED | 108 | 33 | 28 | 98 | 8 |
11P LOSS WILD-TYPE | 167 | 374 | 70 | 159 | 35 |
Figure S587. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D62V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S588. Gene #62: '11p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
11P LOSS MUTATED | 59 | 31 | 26 | 18 | 45 | 10 |
11P LOSS WILD-TYPE | 85 | 68 | 187 | 105 | 90 | 49 |
Figure S588. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D62V4.png)
P value = 0.0405 (Fisher's exact test), Q value = 0.05
Table S589. Gene #62: '11p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
11P LOSS MUTATED | 53 | 32 | 27 |
11P LOSS WILD-TYPE | 98 | 91 | 98 |
Figure S589. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D62V5.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0018
Table S590. Gene #62: '11p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
11P LOSS MUTATED | 8 | 9 | 33 | 12 | 35 | 15 |
11P LOSS WILD-TYPE | 56 | 37 | 57 | 40 | 81 | 16 |
Figure S590. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D62V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S591. Gene #62: '11p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
11P LOSS MUTATED | 144 | 104 | 27 |
11P LOSS WILD-TYPE | 415 | 200 | 185 |
Figure S591. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D62V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S592. Gene #62: '11p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
11P LOSS MUTATED | 78 | 60 | 7 | 53 | 57 | 20 |
11P LOSS WILD-TYPE | 211 | 103 | 83 | 237 | 126 | 40 |
Figure S592. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D62V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S593. Gene #62: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
11P LOSS MUTATED | 107 | 32 | 57 | 71 |
11P LOSS WILD-TYPE | 198 | 180 | 212 | 204 |
Figure S593. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D62V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S594. Gene #62: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
11P LOSS MUTATED | 95 | 52 | 36 | 25 | 17 | 42 |
11P LOSS WILD-TYPE | 199 | 100 | 209 | 115 | 79 | 92 |
Figure S594. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D62V10.png)
P value = 0.00315 (Fisher's exact test), Q value = 0.0047
Table S595. Gene #62: '11p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
11P LOSS MUTATED | 49 | 48 | 21 | 18 | 24 |
11P LOSS WILD-TYPE | 131 | 91 | 78 | 93 | 109 |
Figure S595. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D62V11.png)
P value = 0.0042 (Fisher's exact test), Q value = 0.006
Table S596. Gene #62: '11p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
11P LOSS MUTATED | 92 | 47 | 21 |
11P LOSS WILD-TYPE | 213 | 200 | 89 |
Figure S596. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D62V12.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00018
Table S597. Gene #63: '11q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
11Q LOSS MUTATED | 5 | 16 | 65 | 26 | 25 | 27 | 6 | 15 |
11Q LOSS WILD-TYPE | 16 | 20 | 54 | 70 | 84 | 45 | 14 | 25 |
Figure S597. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D63V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S598. Gene #63: '11q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
11Q LOSS MUTATED | 58 | 49 | 41 | 24 | 13 |
11Q LOSS WILD-TYPE | 43 | 103 | 73 | 64 | 45 |
Figure S598. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D63V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S599. Gene #63: '11q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
11Q LOSS MUTATED | 168 | 64 | 34 | 89 | 10 |
11Q LOSS WILD-TYPE | 107 | 343 | 64 | 168 | 33 |
Figure S599. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D63V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S600. Gene #63: '11q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
11Q LOSS MUTATED | 79 | 44 | 52 | 27 | 41 | 14 |
11Q LOSS WILD-TYPE | 65 | 55 | 161 | 96 | 94 | 45 |
Figure S600. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D63V4.png)
P value = 0.00248 (Fisher's exact test), Q value = 0.0037
Table S601. Gene #63: '11q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
11Q LOSS MUTATED | 12 | 15 | 31 | 17 | 57 | 13 |
11Q LOSS WILD-TYPE | 52 | 31 | 59 | 35 | 59 | 18 |
Figure S601. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D63V6.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00027
Table S602. Gene #63: '11q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
11Q LOSS MUTATED | 219 | 93 | 51 |
11Q LOSS WILD-TYPE | 340 | 211 | 161 |
Figure S602. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D63V7.png)
P value = 0.003 (Fisher's exact test), Q value = 0.0044
Table S603. Gene #63: '11q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
11Q LOSS MUTATED | 117 | 63 | 18 | 94 | 53 | 18 |
11Q LOSS WILD-TYPE | 172 | 100 | 72 | 196 | 130 | 42 |
Figure S603. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D63V8.png)
P value = 0.011 (Fisher's exact test), Q value = 0.015
Table S604. Gene #63: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
11Q LOSS MUTATED | 107 | 52 | 93 | 105 |
11Q LOSS WILD-TYPE | 198 | 160 | 176 | 170 |
Figure S604. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D63V9.png)
P value = 0.00085 (Fisher's exact test), Q value = 0.0014
Table S605. Gene #63: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
11Q LOSS MUTATED | 127 | 53 | 62 | 46 | 29 | 40 |
11Q LOSS WILD-TYPE | 167 | 99 | 183 | 94 | 67 | 94 |
Figure S605. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D63V10.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.016
Table S606. Gene #63: '11q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
11Q LOSS MUTATED | 74 | 49 | 32 | 25 | 37 |
11Q LOSS WILD-TYPE | 106 | 90 | 67 | 86 | 96 |
Figure S606. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D63V11.png)
P value = 0.028 (Fisher's exact test), Q value = 0.035
Table S607. Gene #63: '11q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
11Q LOSS MUTATED | 116 | 71 | 30 |
11Q LOSS WILD-TYPE | 189 | 176 | 80 |
Figure S607. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D63V12.png)
P value = 0.00154 (Fisher's exact test), Q value = 0.0024
Table S608. Gene #64: '12p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
12P LOSS MUTATED | 3 | 7 | 12 | 27 | 8 | 10 | 4 | 3 |
12P LOSS WILD-TYPE | 18 | 29 | 107 | 69 | 101 | 62 | 16 | 37 |
Figure S608. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D64V1.png)
P value = 0.00153 (Fisher's exact test), Q value = 0.0024
Table S609. Gene #64: '12p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
12P LOSS MUTATED | 9 | 14 | 22 | 23 | 6 |
12P LOSS WILD-TYPE | 92 | 138 | 92 | 65 | 52 |
Figure S609. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D64V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S610. Gene #64: '12p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
12P LOSS MUTATED | 38 | 34 | 11 | 67 | 1 |
12P LOSS WILD-TYPE | 237 | 373 | 87 | 190 | 42 |
Figure S610. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D64V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S611. Gene #64: '12p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
12P LOSS MUTATED | 16 | 10 | 16 | 12 | 43 | 9 |
12P LOSS WILD-TYPE | 128 | 89 | 197 | 111 | 92 | 50 |
Figure S611. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D64V4.png)
P value = 0.00957 (Fisher's exact test), Q value = 0.013
Table S612. Gene #64: '12p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
12P LOSS MUTATED | 34 | 16 | 12 |
12P LOSS WILD-TYPE | 117 | 107 | 113 |
Figure S612. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D64V5.png)
P value = 0.00537 (Fisher's exact test), Q value = 0.0076
Table S613. Gene #64: '12p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
12P LOSS MUTATED | 12 | 4 | 21 | 9 | 8 | 8 |
12P LOSS WILD-TYPE | 52 | 42 | 69 | 43 | 108 | 23 |
Figure S613. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D64V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S614. Gene #64: '12p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
12P LOSS MUTATED | 52 | 80 | 18 |
12P LOSS WILD-TYPE | 507 | 224 | 194 |
Figure S614. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D64V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S615. Gene #64: '12p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
12P LOSS MUTATED | 29 | 25 | 5 | 26 | 50 | 15 |
12P LOSS WILD-TYPE | 260 | 138 | 85 | 264 | 133 | 45 |
Figure S615. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D64V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S616. Gene #64: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
12P LOSS MUTATED | 70 | 17 | 20 | 42 |
12P LOSS WILD-TYPE | 235 | 195 | 249 | 233 |
Figure S616. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D64V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S617. Gene #64: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
12P LOSS MUTATED | 41 | 34 | 15 | 15 | 7 | 37 |
12P LOSS WILD-TYPE | 253 | 118 | 230 | 125 | 89 | 97 |
Figure S617. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D64V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S618. Gene #64: '12p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
12P LOSS MUTATED | 22 | 45 | 9 | 11 | 9 |
12P LOSS WILD-TYPE | 158 | 94 | 90 | 100 | 124 |
Figure S618. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D64V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S619. Gene #64: '12p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
12P LOSS MUTATED | 69 | 16 | 11 |
12P LOSS WILD-TYPE | 236 | 231 | 99 |
Figure S619. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D64V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S620. Gene #65: '12q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
12Q LOSS MUTATED | 2 | 3 | 7 | 33 | 5 | 5 | 2 | 3 |
12Q LOSS WILD-TYPE | 19 | 33 | 112 | 63 | 104 | 67 | 18 | 37 |
Figure S620. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D65V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S621. Gene #65: '12q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
12Q LOSS MUTATED | 5 | 8 | 15 | 28 | 4 |
12Q LOSS WILD-TYPE | 96 | 144 | 99 | 60 | 54 |
Figure S621. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D65V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S622. Gene #65: '12q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
12Q LOSS MUTATED | 20 | 22 | 9 | 78 | 2 |
12Q LOSS WILD-TYPE | 255 | 385 | 89 | 179 | 41 |
Figure S622. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D65V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S623. Gene #65: '12q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
12Q LOSS MUTATED | 11 | 9 | 10 | 9 | 55 | 3 |
12Q LOSS WILD-TYPE | 133 | 90 | 203 | 114 | 80 | 56 |
Figure S623. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D65V4.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S624. Gene #65: '12q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
12Q LOSS MUTATED | 33 | 9 | 7 |
12Q LOSS WILD-TYPE | 118 | 114 | 118 |
Figure S624. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D65V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S625. Gene #65: '12q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
12Q LOSS MUTATED | 8 | 2 | 28 | 3 | 4 | 4 |
12Q LOSS WILD-TYPE | 56 | 44 | 62 | 49 | 112 | 27 |
Figure S625. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D65V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S626. Gene #65: '12q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
12Q LOSS MUTATED | 32 | 85 | 13 |
12Q LOSS WILD-TYPE | 527 | 219 | 199 |
Figure S626. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D65V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S627. Gene #65: '12q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
12Q LOSS MUTATED | 16 | 16 | 3 | 19 | 63 | 13 |
12Q LOSS WILD-TYPE | 273 | 147 | 87 | 271 | 120 | 47 |
Figure S627. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D65V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S628. Gene #65: '12q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
12Q LOSS MUTATED | 77 | 15 | 11 | 25 |
12Q LOSS WILD-TYPE | 228 | 197 | 258 | 250 |
Figure S628. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D65V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S629. Gene #65: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
12Q LOSS MUTATED | 30 | 30 | 11 | 6 | 4 | 47 |
12Q LOSS WILD-TYPE | 264 | 122 | 234 | 134 | 92 | 87 |
Figure S629. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D65V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S630. Gene #65: '12q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
12Q LOSS MUTATED | 15 | 53 | 6 | 10 | 11 |
12Q LOSS WILD-TYPE | 165 | 86 | 93 | 101 | 122 |
Figure S630. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D65V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S631. Gene #65: '12q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
12Q LOSS MUTATED | 72 | 16 | 7 |
12Q LOSS WILD-TYPE | 233 | 231 | 103 |
Figure S631. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D65V12.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00012
Table S632. Gene #66: '13q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
13Q LOSS MUTATED | 7 | 14 | 62 | 51 | 30 | 38 | 9 | 8 |
13Q LOSS WILD-TYPE | 14 | 22 | 57 | 45 | 79 | 34 | 11 | 32 |
Figure S632. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D66V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S633. Gene #66: '13q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
13Q LOSS MUTATED | 58 | 40 | 62 | 47 | 12 |
13Q LOSS WILD-TYPE | 43 | 112 | 52 | 41 | 46 |
Figure S633. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D66V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S634. Gene #66: '13q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
13Q LOSS MUTATED | 148 | 77 | 49 | 133 | 26 |
13Q LOSS WILD-TYPE | 127 | 330 | 49 | 124 | 17 |
Figure S634. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D66V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S635. Gene #66: '13q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
13Q LOSS MUTATED | 67 | 48 | 64 | 39 | 73 | 12 |
13Q LOSS WILD-TYPE | 77 | 51 | 149 | 84 | 62 | 47 |
Figure S635. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D66V4.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.00078
Table S636. Gene #66: '13q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
13Q LOSS MUTATED | 17 | 21 | 50 | 15 | 59 | 10 |
13Q LOSS WILD-TYPE | 47 | 25 | 40 | 37 | 57 | 21 |
Figure S636. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D66V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S637. Gene #66: '13q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
13Q LOSS MUTATED | 220 | 161 | 51 |
13Q LOSS WILD-TYPE | 339 | 143 | 161 |
Figure S637. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D66V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S638. Gene #66: '13q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
13Q LOSS MUTATED | 117 | 83 | 18 | 92 | 98 | 24 |
13Q LOSS WILD-TYPE | 172 | 80 | 72 | 198 | 85 | 36 |
Figure S638. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D66V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S639. Gene #66: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
13Q LOSS MUTATED | 159 | 52 | 98 | 117 |
13Q LOSS WILD-TYPE | 146 | 160 | 171 | 158 |
Figure S639. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D66V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S640. Gene #66: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
13Q LOSS MUTATED | 147 | 68 | 66 | 43 | 30 | 72 |
13Q LOSS WILD-TYPE | 147 | 84 | 179 | 97 | 66 | 62 |
Figure S640. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D66V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S641. Gene #66: '13q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
13Q LOSS MUTATED | 78 | 74 | 29 | 24 | 44 |
13Q LOSS WILD-TYPE | 102 | 65 | 70 | 87 | 89 |
Figure S641. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D66V11.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.00076
Table S642. Gene #66: '13q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
13Q LOSS MUTATED | 139 | 78 | 32 |
13Q LOSS WILD-TYPE | 166 | 169 | 78 |
Figure S642. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D66V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S643. Gene #67: '14q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
14Q LOSS MUTATED | 3 | 1 | 30 | 50 | 7 | 14 | 9 | 5 |
14Q LOSS WILD-TYPE | 18 | 35 | 89 | 46 | 102 | 58 | 11 | 35 |
Figure S643. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D67V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S644. Gene #67: '14q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
14Q LOSS MUTATED | 24 | 17 | 29 | 47 | 2 |
14Q LOSS WILD-TYPE | 77 | 135 | 85 | 41 | 56 |
Figure S644. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D67V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S645. Gene #67: '14q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
14Q LOSS MUTATED | 61 | 36 | 21 | 138 | 10 |
14Q LOSS WILD-TYPE | 214 | 371 | 77 | 119 | 33 |
Figure S645. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D67V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S646. Gene #67: '14q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
14Q LOSS MUTATED | 36 | 26 | 21 | 27 | 80 | 6 |
14Q LOSS WILD-TYPE | 108 | 73 | 192 | 96 | 55 | 53 |
Figure S646. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D67V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S647. Gene #67: '14q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
14Q LOSS MUTATED | 55 | 24 | 16 |
14Q LOSS WILD-TYPE | 96 | 99 | 109 |
Figure S647. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D67V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S648. Gene #67: '14q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
14Q LOSS MUTATED | 4 | 9 | 44 | 10 | 23 | 5 |
14Q LOSS WILD-TYPE | 60 | 37 | 46 | 42 | 93 | 26 |
Figure S648. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D67V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S649. Gene #67: '14q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
14Q LOSS MUTATED | 100 | 144 | 21 |
14Q LOSS WILD-TYPE | 459 | 160 | 191 |
Figure S649. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D67V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S650. Gene #67: '14q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
14Q LOSS MUTATED | 42 | 55 | 3 | 44 | 109 | 12 |
14Q LOSS WILD-TYPE | 247 | 108 | 87 | 246 | 74 | 48 |
Figure S650. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D67V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S651. Gene #67: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
14Q LOSS MUTATED | 143 | 29 | 35 | 52 |
14Q LOSS WILD-TYPE | 162 | 183 | 234 | 223 |
Figure S651. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D67V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S652. Gene #67: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
14Q LOSS MUTATED | 61 | 54 | 30 | 19 | 9 | 86 |
14Q LOSS WILD-TYPE | 233 | 98 | 215 | 121 | 87 | 48 |
Figure S652. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D67V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S653. Gene #67: '14q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
14Q LOSS MUTATED | 35 | 78 | 19 | 17 | 24 |
14Q LOSS WILD-TYPE | 145 | 61 | 80 | 94 | 109 |
Figure S653. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D67V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S654. Gene #67: '14q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
14Q LOSS MUTATED | 113 | 44 | 16 |
14Q LOSS WILD-TYPE | 192 | 203 | 94 |
Figure S654. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D67V12.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00018
Table S655. Gene #68: '15q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
15Q LOSS MUTATED | 4 | 9 | 32 | 45 | 22 | 33 | 8 | 6 |
15Q LOSS WILD-TYPE | 17 | 27 | 87 | 51 | 87 | 39 | 12 | 34 |
Figure S655. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D68V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S656. Gene #68: '15q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
15Q LOSS MUTATED | 27 | 29 | 48 | 43 | 12 |
15Q LOSS WILD-TYPE | 74 | 123 | 66 | 45 | 46 |
Figure S656. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D68V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S657. Gene #68: '15q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
15Q LOSS MUTATED | 87 | 41 | 42 | 136 | 14 |
15Q LOSS WILD-TYPE | 188 | 366 | 56 | 121 | 29 |
Figure S657. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D68V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S658. Gene #68: '15q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
15Q LOSS MUTATED | 51 | 29 | 35 | 29 | 74 | 9 |
15Q LOSS WILD-TYPE | 93 | 70 | 178 | 94 | 61 | 50 |
Figure S658. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D68V4.png)
P value = 0.0024 (Fisher's exact test), Q value = 0.0036
Table S659. Gene #68: '15q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
15Q LOSS MUTATED | 67 | 32 | 36 |
15Q LOSS WILD-TYPE | 84 | 91 | 89 |
Figure S659. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D68V5.png)
P value = 0.00889 (Fisher's exact test), Q value = 0.012
Table S660. Gene #68: '15q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
15Q LOSS MUTATED | 19 | 8 | 44 | 16 | 38 | 10 |
15Q LOSS WILD-TYPE | 45 | 38 | 46 | 36 | 78 | 21 |
Figure S660. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D68V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S661. Gene #68: '15q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
15Q LOSS MUTATED | 153 | 139 | 25 |
15Q LOSS WILD-TYPE | 406 | 165 | 187 |
Figure S661. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D68V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S662. Gene #68: '15q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
15Q LOSS MUTATED | 74 | 66 | 8 | 58 | 94 | 17 |
15Q LOSS WILD-TYPE | 215 | 97 | 82 | 232 | 89 | 43 |
Figure S662. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D68V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S663. Gene #68: '15q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
15Q LOSS MUTATED | 135 | 28 | 56 | 92 |
15Q LOSS WILD-TYPE | 170 | 184 | 213 | 183 |
Figure S663. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D68V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S664. Gene #68: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
15Q LOSS MUTATED | 94 | 63 | 28 | 39 | 16 | 71 |
15Q LOSS WILD-TYPE | 200 | 89 | 217 | 101 | 80 | 63 |
Figure S664. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D68V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S665. Gene #68: '15q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
15Q LOSS MUTATED | 55 | 71 | 23 | 21 | 21 |
15Q LOSS WILD-TYPE | 125 | 68 | 76 | 90 | 112 |
Figure S665. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D68V11.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S666. Gene #68: '15q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
15Q LOSS MUTATED | 114 | 47 | 30 |
15Q LOSS WILD-TYPE | 191 | 200 | 80 |
Figure S666. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D68V12.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00057
Table S667. Gene #69: '16p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
16P LOSS MUTATED | 41 | 49 | 11 | 64 | 8 |
16P LOSS WILD-TYPE | 234 | 358 | 87 | 193 | 35 |
Figure S667. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D69V3.png)
P value = 0.00037 (Fisher's exact test), Q value = 0.00065
Table S668. Gene #69: '16p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
16P LOSS MUTATED | 19 | 16 | 26 | 24 | 39 | 4 |
16P LOSS WILD-TYPE | 125 | 83 | 187 | 99 | 96 | 55 |
Figure S668. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D69V4.png)
P value = 0.00993 (Fisher's exact test), Q value = 0.013
Table S669. Gene #69: '16p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
16P LOSS MUTATED | 30 | 9 | 19 |
16P LOSS WILD-TYPE | 121 | 114 | 106 |
Figure S669. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D69V5.png)
P value = 0.00056 (Fisher's exact test), Q value = 0.00095
Table S670. Gene #69: '16p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
16P LOSS MUTATED | 77 | 70 | 25 |
16P LOSS WILD-TYPE | 482 | 234 | 187 |
Figure S670. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D69V7.png)
P value = 0.00165 (Fisher's exact test), Q value = 0.0026
Table S671. Gene #69: '16p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
16P LOSS MUTATED | 37 | 23 | 14 | 41 | 50 | 7 |
16P LOSS WILD-TYPE | 252 | 140 | 76 | 249 | 133 | 53 |
Figure S671. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D69V8.png)
P value = 0.00148 (Fisher's exact test), Q value = 0.0023
Table S672. Gene #69: '16p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
16P LOSS MUTATED | 70 | 30 | 40 | 31 |
16P LOSS WILD-TYPE | 235 | 182 | 229 | 244 |
Figure S672. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D69V9.png)
P value = 0.00051 (Fisher's exact test), Q value = 0.00087
Table S673. Gene #69: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
16P LOSS MUTATED | 41 | 25 | 32 | 21 | 11 | 41 |
16P LOSS WILD-TYPE | 253 | 127 | 213 | 119 | 85 | 93 |
Figure S673. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D69V10.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00035
Table S674. Gene #69: '16p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
16P LOSS MUTATED | 22 | 42 | 12 | 13 | 21 |
16P LOSS WILD-TYPE | 158 | 97 | 87 | 98 | 112 |
Figure S674. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D69V11.png)
P value = 0.0302 (Fisher's exact test), Q value = 0.038
Table S675. Gene #69: '16p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
16P LOSS MUTATED | 62 | 37 | 11 |
16P LOSS WILD-TYPE | 243 | 210 | 99 |
Figure S675. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D69V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S676. Gene #70: '16q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
16Q LOSS MUTATED | 12 | 21 | 63 | 28 | 81 | 38 | 11 | 30 |
16Q LOSS WILD-TYPE | 9 | 15 | 56 | 68 | 28 | 34 | 9 | 10 |
Figure S676. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D70V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S677. Gene #70: '16q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
16Q LOSS MUTATED | 58 | 102 | 58 | 24 | 42 |
16Q LOSS WILD-TYPE | 43 | 50 | 56 | 64 | 16 |
Figure S677. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D70V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S678. Gene #70: '16q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
16Q LOSS MUTATED | 141 | 243 | 75 | 108 | 26 |
16Q LOSS WILD-TYPE | 134 | 164 | 23 | 149 | 17 |
Figure S678. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D70V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S679. Gene #70: '16q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
16Q LOSS MUTATED | 65 | 66 | 153 | 55 | 58 | 28 |
16Q LOSS WILD-TYPE | 79 | 33 | 60 | 68 | 77 | 31 |
Figure S679. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D70V4.png)
P value = 0.00166 (Fisher's exact test), Q value = 0.0026
Table S680. Gene #70: '16q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
16Q LOSS MUTATED | 63 | 68 | 79 |
16Q LOSS WILD-TYPE | 88 | 55 | 46 |
Figure S680. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D70V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S681. Gene #70: '16q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
16Q LOSS MUTATED | 47 | 25 | 28 | 29 | 70 | 11 |
16Q LOSS WILD-TYPE | 17 | 21 | 62 | 23 | 46 | 20 |
Figure S681. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D70V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S682. Gene #70: '16q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
16Q LOSS MUTATED | 343 | 115 | 133 |
16Q LOSS WILD-TYPE | 216 | 189 | 79 |
Figure S682. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D70V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S683. Gene #70: '16q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
16Q LOSS MUTATED | 167 | 86 | 64 | 193 | 64 | 17 |
16Q LOSS WILD-TYPE | 122 | 77 | 26 | 97 | 119 | 43 |
Figure S683. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D70V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S684. Gene #70: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
16Q LOSS MUTATED | 113 | 129 | 181 | 160 |
16Q LOSS WILD-TYPE | 192 | 83 | 88 | 115 |
Figure S684. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D70V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S685. Gene #70: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
16Q LOSS MUTATED | 162 | 51 | 158 | 109 | 48 | 55 |
16Q LOSS WILD-TYPE | 132 | 101 | 87 | 31 | 48 | 79 |
Figure S685. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D70V10.png)
P value = 0.00134 (Fisher's exact test), Q value = 0.0021
Table S686. Gene #70: '16q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
16Q LOSS MUTATED | 103 | 55 | 63 | 61 | 80 |
16Q LOSS WILD-TYPE | 77 | 84 | 36 | 50 | 53 |
Figure S686. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D70V11.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00016
Table S687. Gene #70: '16q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
16Q LOSS MUTATED | 139 | 153 | 70 |
16Q LOSS WILD-TYPE | 166 | 94 | 40 |
Figure S687. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D70V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S688. Gene #71: '17p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
17P LOSS MUTATED | 13 | 23 | 66 | 61 | 30 | 57 | 12 | 21 |
17P LOSS WILD-TYPE | 8 | 13 | 53 | 35 | 79 | 15 | 8 | 19 |
Figure S688. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D71V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S689. Gene #71: '17p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
17P LOSS MUTATED | 57 | 76 | 85 | 54 | 11 |
17P LOSS WILD-TYPE | 44 | 76 | 29 | 34 | 47 |
Figure S689. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D71V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S690. Gene #71: '17p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
17P LOSS MUTATED | 182 | 144 | 42 | 191 | 20 |
17P LOSS WILD-TYPE | 93 | 263 | 56 | 66 | 23 |
Figure S690. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D71V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S691. Gene #71: '17p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
17P LOSS MUTATED | 101 | 63 | 84 | 51 | 83 | 23 |
17P LOSS WILD-TYPE | 43 | 36 | 129 | 72 | 52 | 36 |
Figure S691. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D71V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S692. Gene #71: '17p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
17P LOSS MUTATED | 111 | 59 | 50 |
17P LOSS WILD-TYPE | 40 | 64 | 75 |
Figure S692. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D71V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S693. Gene #71: '17p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
17P LOSS MUTATED | 21 | 15 | 61 | 29 | 71 | 23 |
17P LOSS WILD-TYPE | 43 | 31 | 29 | 23 | 45 | 8 |
Figure S693. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D71V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S694. Gene #71: '17p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
17P LOSS MUTATED | 281 | 205 | 90 |
17P LOSS WILD-TYPE | 278 | 99 | 122 |
Figure S694. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D71V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S695. Gene #71: '17p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
17P LOSS MUTATED | 125 | 122 | 41 | 135 | 109 | 44 |
17P LOSS WILD-TYPE | 164 | 41 | 49 | 155 | 74 | 16 |
Figure S695. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D71V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S696. Gene #71: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
17P LOSS MUTATED | 202 | 86 | 131 | 150 |
17P LOSS WILD-TYPE | 103 | 126 | 138 | 125 |
Figure S696. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D71V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S697. Gene #71: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
17P LOSS MUTATED | 178 | 92 | 104 | 78 | 27 | 90 |
17P LOSS WILD-TYPE | 116 | 60 | 141 | 62 | 69 | 44 |
Figure S697. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D71V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S698. Gene #72: '17q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
17Q LOSS MUTATED | 4 | 4 | 23 | 50 | 12 | 35 | 4 | 12 |
17Q LOSS WILD-TYPE | 17 | 32 | 96 | 46 | 97 | 37 | 16 | 28 |
Figure S698. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D72V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S699. Gene #72: '17q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
17Q LOSS MUTATED | 21 | 26 | 48 | 44 | 5 |
17Q LOSS WILD-TYPE | 80 | 126 | 66 | 44 | 53 |
Figure S699. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D72V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S700. Gene #72: '17q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
17Q LOSS MUTATED | 62 | 53 | 25 | 130 | 5 |
17Q LOSS WILD-TYPE | 213 | 354 | 73 | 127 | 38 |
Figure S700. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D72V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S701. Gene #72: '17q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
17Q LOSS MUTATED | 40 | 18 | 17 | 34 | 64 | 4 |
17Q LOSS WILD-TYPE | 104 | 81 | 196 | 89 | 71 | 55 |
Figure S701. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D72V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S702. Gene #72: '17q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
17Q LOSS MUTATED | 72 | 29 | 17 |
17Q LOSS WILD-TYPE | 79 | 94 | 108 |
Figure S702. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D72V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S703. Gene #72: '17q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
17Q LOSS MUTATED | 8 | 10 | 50 | 11 | 24 | 15 |
17Q LOSS WILD-TYPE | 56 | 36 | 40 | 41 | 92 | 16 |
Figure S703. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D72V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S704. Gene #72: '17q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
17Q LOSS MUTATED | 98 | 141 | 34 |
17Q LOSS WILD-TYPE | 461 | 163 | 178 |
Figure S704. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D72V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S705. Gene #72: '17q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
17Q LOSS MUTATED | 32 | 58 | 14 | 53 | 83 | 33 |
17Q LOSS WILD-TYPE | 257 | 105 | 76 | 237 | 100 | 27 |
Figure S705. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D72V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S706. Gene #72: '17q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
17Q LOSS MUTATED | 126 | 38 | 46 | 60 |
17Q LOSS WILD-TYPE | 179 | 174 | 223 | 215 |
Figure S706. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D72V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S707. Gene #72: '17q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
17Q LOSS MUTATED | 73 | 59 | 41 | 24 | 5 | 68 |
17Q LOSS WILD-TYPE | 221 | 93 | 204 | 116 | 91 | 66 |
Figure S707. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D72V10.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00016
Table S708. Gene #72: '17q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
17Q LOSS MUTATED | 37 | 58 | 16 | 23 | 32 |
17Q LOSS WILD-TYPE | 143 | 81 | 83 | 88 | 101 |
Figure S708. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D72V11.png)
P value = 0.00222 (Fisher's exact test), Q value = 0.0034
Table S709. Gene #72: '17q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
17Q LOSS MUTATED | 95 | 53 | 18 |
17Q LOSS WILD-TYPE | 210 | 194 | 92 |
Figure S709. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D72V12.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00039
Table S710. Gene #73: '18p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
18P LOSS MUTATED | 6 | 11 | 35 | 27 | 19 | 38 | 9 | 13 |
18P LOSS WILD-TYPE | 15 | 25 | 84 | 69 | 90 | 34 | 11 | 27 |
Figure S710. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D73V1.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.00076
Table S711. Gene #73: '18p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
18P LOSS MUTATED | 28 | 39 | 55 | 24 | 12 |
18P LOSS WILD-TYPE | 73 | 113 | 59 | 64 | 46 |
Figure S711. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D73V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S712. Gene #73: '18p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
18P LOSS MUTATED | 109 | 65 | 38 | 97 | 11 |
18P LOSS WILD-TYPE | 166 | 342 | 60 | 160 | 32 |
Figure S712. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D73V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S713. Gene #73: '18p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
18P LOSS MUTATED | 63 | 42 | 43 | 33 | 39 | 10 |
18P LOSS WILD-TYPE | 81 | 57 | 170 | 90 | 96 | 49 |
Figure S713. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D73V4.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.00052
Table S714. Gene #73: '18p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
18P LOSS MUTATED | 161 | 114 | 45 |
18P LOSS WILD-TYPE | 398 | 190 | 167 |
Figure S714. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D73V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S715. Gene #73: '18p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
18P LOSS MUTATED | 66 | 87 | 14 | 79 | 50 | 24 |
18P LOSS WILD-TYPE | 223 | 76 | 76 | 211 | 133 | 36 |
Figure S715. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D73V8.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00016
Table S716. Gene #73: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
18P LOSS MUTATED | 111 | 45 | 64 | 97 |
18P LOSS WILD-TYPE | 194 | 167 | 205 | 178 |
Figure S716. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D73V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S717. Gene #73: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
18P LOSS MUTATED | 119 | 53 | 56 | 38 | 17 | 34 |
18P LOSS WILD-TYPE | 175 | 99 | 189 | 102 | 79 | 100 |
Figure S717. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D73V10.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00039
Table S718. Gene #74: '18q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
18Q LOSS MUTATED | 5 | 11 | 34 | 26 | 19 | 38 | 7 | 9 |
18Q LOSS WILD-TYPE | 16 | 25 | 85 | 70 | 90 | 34 | 13 | 31 |
Figure S718. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D74V1.png)
P value = 0.00022 (Fisher's exact test), Q value = 4e-04
Table S719. Gene #74: '18q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
18Q LOSS MUTATED | 27 | 34 | 53 | 24 | 11 |
18Q LOSS WILD-TYPE | 74 | 118 | 61 | 64 | 47 |
Figure S719. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D74V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S720. Gene #74: '18q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
18Q LOSS MUTATED | 107 | 64 | 39 | 101 | 10 |
18Q LOSS WILD-TYPE | 168 | 343 | 59 | 156 | 33 |
Figure S720. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D74V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S721. Gene #74: '18q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
18Q LOSS MUTATED | 64 | 41 | 44 | 31 | 46 | 9 |
18Q LOSS WILD-TYPE | 80 | 58 | 169 | 92 | 89 | 50 |
Figure S721. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D74V4.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.014
Table S722. Gene #74: '18q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
18Q LOSS MUTATED | 57 | 27 | 32 |
18Q LOSS WILD-TYPE | 94 | 96 | 93 |
Figure S722. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D74V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S723. Gene #74: '18q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
18Q LOSS MUTATED | 160 | 118 | 42 |
18Q LOSS WILD-TYPE | 399 | 186 | 170 |
Figure S723. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D74V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S724. Gene #74: '18q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
18Q LOSS MUTATED | 61 | 88 | 15 | 74 | 56 | 26 |
18Q LOSS WILD-TYPE | 228 | 75 | 75 | 216 | 127 | 34 |
Figure S724. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D74V8.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S725. Gene #74: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
18Q LOSS MUTATED | 115 | 45 | 64 | 92 |
18Q LOSS WILD-TYPE | 190 | 167 | 205 | 183 |
Figure S725. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D74V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S726. Gene #74: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
18Q LOSS MUTATED | 112 | 60 | 55 | 35 | 15 | 39 |
18Q LOSS WILD-TYPE | 182 | 92 | 190 | 105 | 81 | 95 |
Figure S726. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D74V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S727. Gene #75: '19p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
19P LOSS MUTATED | 2 | 6 | 30 | 20 | 8 | 25 | 1 | 2 |
19P LOSS WILD-TYPE | 19 | 30 | 89 | 76 | 101 | 47 | 19 | 38 |
Figure S727. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D75V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S728. Gene #75: '19p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
19P LOSS MUTATED | 29 | 13 | 32 | 18 | 2 |
19P LOSS WILD-TYPE | 72 | 139 | 82 | 70 | 56 |
Figure S728. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D75V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S729. Gene #75: '19p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
19P LOSS MUTATED | 93 | 20 | 9 | 66 | 5 |
19P LOSS WILD-TYPE | 182 | 387 | 89 | 191 | 38 |
Figure S729. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D75V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S730. Gene #75: '19p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
19P LOSS MUTATED | 53 | 13 | 15 | 15 | 34 | 3 |
19P LOSS WILD-TYPE | 91 | 86 | 198 | 108 | 101 | 56 |
Figure S730. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D75V4.png)
P value = 0.0416 (Fisher's exact test), Q value = 0.051
Table S731. Gene #75: '19p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
19P LOSS MUTATED | 38 | 17 | 20 |
19P LOSS WILD-TYPE | 113 | 106 | 105 |
Figure S731. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D75V5.png)
P value = 0.00096 (Fisher's exact test), Q value = 0.0016
Table S732. Gene #75: '19p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
19P LOSS MUTATED | 3 | 6 | 21 | 7 | 27 | 11 |
19P LOSS WILD-TYPE | 61 | 40 | 69 | 45 | 89 | 20 |
Figure S732. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D75V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S733. Gene #75: '19p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
19P LOSS MUTATED | 102 | 79 | 11 |
19P LOSS WILD-TYPE | 457 | 225 | 201 |
Figure S733. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D75V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S734. Gene #75: '19p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
19P LOSS MUTATED | 54 | 56 | 3 | 25 | 44 | 10 |
19P LOSS WILD-TYPE | 235 | 107 | 87 | 265 | 139 | 50 |
Figure S734. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D75V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S735. Gene #75: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
19P LOSS MUTATED | 87 | 13 | 42 | 46 |
19P LOSS WILD-TYPE | 218 | 199 | 227 | 229 |
Figure S735. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D75V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S736. Gene #75: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
19P LOSS MUTATED | 71 | 38 | 13 | 14 | 19 | 33 |
19P LOSS WILD-TYPE | 223 | 114 | 232 | 126 | 77 | 101 |
Figure S736. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D75V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S737. Gene #75: '19p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
19P LOSS MUTATED | 37 | 41 | 13 | 6 | 20 |
19P LOSS WILD-TYPE | 143 | 98 | 86 | 105 | 113 |
Figure S737. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D75V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S738. Gene #75: '19p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
19P LOSS MUTATED | 77 | 34 | 6 |
19P LOSS WILD-TYPE | 228 | 213 | 104 |
Figure S738. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D75V12.png)
P value = 0.00491 (Fisher's exact test), Q value = 0.007
Table S739. Gene #76: '19q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
19Q LOSS MUTATED | 3 | 6 | 20 | 13 | 8 | 21 | 2 | 2 |
19Q LOSS WILD-TYPE | 18 | 30 | 99 | 83 | 101 | 51 | 18 | 38 |
Figure S739. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D76V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S740. Gene #76: '19q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
19Q LOSS MUTATED | 23 | 10 | 29 | 11 | 2 |
19Q LOSS WILD-TYPE | 78 | 142 | 85 | 77 | 56 |
Figure S740. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D76V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S741. Gene #76: '19q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
19Q LOSS MUTATED | 84 | 15 | 6 | 50 | 6 |
19Q LOSS WILD-TYPE | 191 | 392 | 92 | 207 | 37 |
Figure S741. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D76V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S742. Gene #76: '19q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
19Q LOSS MUTATED | 41 | 15 | 12 | 17 | 27 | 2 |
19Q LOSS WILD-TYPE | 103 | 84 | 201 | 106 | 108 | 57 |
Figure S742. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D76V4.png)
P value = 0.0265 (Fisher's exact test), Q value = 0.034
Table S743. Gene #76: '19q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
19Q LOSS MUTATED | 3 | 4 | 15 | 6 | 22 | 8 |
19Q LOSS WILD-TYPE | 61 | 42 | 75 | 46 | 94 | 23 |
Figure S743. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D76V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S744. Gene #76: '19q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
19Q LOSS MUTATED | 87 | 65 | 8 |
19Q LOSS WILD-TYPE | 472 | 239 | 204 |
Figure S744. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D76V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S745. Gene #76: '19q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
19Q LOSS MUTATED | 53 | 42 | 2 | 18 | 34 | 11 |
19Q LOSS WILD-TYPE | 236 | 121 | 88 | 272 | 149 | 49 |
Figure S745. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D76V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S746. Gene #76: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
19Q LOSS MUTATED | 71 | 11 | 35 | 40 |
19Q LOSS WILD-TYPE | 234 | 201 | 234 | 235 |
Figure S746. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D76V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S747. Gene #76: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
19Q LOSS MUTATED | 59 | 25 | 12 | 12 | 20 | 29 |
19Q LOSS WILD-TYPE | 235 | 127 | 233 | 128 | 76 | 105 |
Figure S747. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D76V10.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.00054
Table S748. Gene #76: '19q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
19Q LOSS MUTATED | 30 | 34 | 10 | 6 | 16 |
19Q LOSS WILD-TYPE | 150 | 105 | 89 | 105 | 117 |
Figure S748. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D76V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S749. Gene #76: '19q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
19Q LOSS MUTATED | 65 | 27 | 4 |
19Q LOSS WILD-TYPE | 240 | 220 | 106 |
Figure S749. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D76V12.png)
P value = 0.00321 (Fisher's exact test), Q value = 0.0047
Table S750. Gene #77: '20p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
20P LOSS MUTATED | 1 | 2 | 10 | 16 | 2 | 7 | 1 | 0 |
20P LOSS WILD-TYPE | 20 | 34 | 109 | 80 | 107 | 65 | 19 | 40 |
Figure S750. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D77V1.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00035
Table S751. Gene #77: '20p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
20P LOSS MUTATED | 9 | 4 | 12 | 14 | 0 |
20P LOSS WILD-TYPE | 92 | 148 | 102 | 74 | 58 |
Figure S751. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D77V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S752. Gene #77: '20p loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
20P LOSS MUTATED | 28 | 8 | 6 | 48 | 3 |
20P LOSS WILD-TYPE | 247 | 399 | 92 | 209 | 40 |
Figure S752. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D77V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S753. Gene #77: '20p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
20P LOSS MUTATED | 12 | 9 | 11 | 3 | 33 | 1 |
20P LOSS WILD-TYPE | 132 | 90 | 202 | 120 | 102 | 58 |
Figure S753. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D77V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S754. Gene #77: '20p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
20P LOSS MUTATED | 36 | 54 | 3 |
20P LOSS WILD-TYPE | 523 | 250 | 209 |
Figure S754. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D77V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S755. Gene #77: '20p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
20P LOSS MUTATED | 19 | 22 | 2 | 5 | 41 | 4 |
20P LOSS WILD-TYPE | 270 | 141 | 88 | 285 | 142 | 56 |
Figure S755. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D77V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S756. Gene #77: '20p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
20P LOSS MUTATED | 49 | 7 | 16 | 15 |
20P LOSS WILD-TYPE | 256 | 205 | 253 | 260 |
Figure S756. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D77V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S757. Gene #77: '20p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
20P LOSS MUTATED | 27 | 12 | 7 | 4 | 5 | 32 |
20P LOSS WILD-TYPE | 267 | 140 | 238 | 136 | 91 | 102 |
Figure S757. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D77V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S758. Gene #77: '20p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
20P LOSS MUTATED | 8 | 28 | 6 | 4 | 5 |
20P LOSS WILD-TYPE | 172 | 111 | 93 | 107 | 128 |
Figure S758. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D77V11.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00016
Table S759. Gene #77: '20p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
20P LOSS MUTATED | 37 | 13 | 1 |
20P LOSS WILD-TYPE | 268 | 234 | 109 |
Figure S759. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D77V12.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.017
Table S760. Gene #78: '20q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
20Q LOSS MUTATED | 1 | 2 | 3 | 11 | 1 | 4 | 0 | 0 |
20Q LOSS WILD-TYPE | 20 | 34 | 116 | 85 | 108 | 68 | 20 | 40 |
Figure S760. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D78V1.png)
P value = 0.00502 (Fisher's exact test), Q value = 0.0071
Table S761. Gene #78: '20q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
20Q LOSS MUTATED | 3 | 3 | 6 | 10 | 0 |
20Q LOSS WILD-TYPE | 98 | 149 | 108 | 78 | 58 |
Figure S761. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D78V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S762. Gene #78: '20q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
20Q LOSS MUTATED | 13 | 3 | 5 | 32 | 2 |
20Q LOSS WILD-TYPE | 262 | 404 | 93 | 225 | 41 |
Figure S762. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D78V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S763. Gene #78: '20q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
20Q LOSS MUTATED | 5 | 2 | 6 | 2 | 26 | 0 |
20Q LOSS WILD-TYPE | 139 | 97 | 207 | 121 | 109 | 59 |
Figure S763. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D78V4.png)
P value = 0.0443 (Fisher's exact test), Q value = 0.054
Table S764. Gene #78: '20q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
20Q LOSS MUTATED | 10 | 2 | 2 |
20Q LOSS WILD-TYPE | 141 | 121 | 123 |
Figure S764. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D78V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S765. Gene #78: '20q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
20Q LOSS MUTATED | 16 | 36 | 3 |
20Q LOSS WILD-TYPE | 543 | 268 | 209 |
Figure S765. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D78V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S766. Gene #78: '20q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
20Q LOSS MUTATED | 8 | 9 | 2 | 3 | 31 | 2 |
20Q LOSS WILD-TYPE | 281 | 154 | 88 | 287 | 152 | 58 |
Figure S766. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D78V8.png)
P value = 0.00016 (Fisher's exact test), Q value = 3e-04
Table S767. Gene #78: '20q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
20Q LOSS MUTATED | 30 | 6 | 8 | 8 |
20Q LOSS WILD-TYPE | 275 | 206 | 261 | 267 |
Figure S767. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D78V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S768. Gene #78: '20q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
20Q LOSS MUTATED | 11 | 10 | 6 | 1 | 1 | 23 |
20Q LOSS WILD-TYPE | 283 | 142 | 239 | 139 | 95 | 111 |
Figure S768. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D78V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S769. Gene #78: '20q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
20Q LOSS MUTATED | 2 | 22 | 2 | 2 | 3 |
20Q LOSS WILD-TYPE | 178 | 117 | 97 | 109 | 130 |
Figure S769. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D78V11.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00037
Table S770. Gene #78: '20q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
20Q LOSS MUTATED | 25 | 6 | 0 |
20Q LOSS WILD-TYPE | 280 | 241 | 110 |
Figure S770. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D78V12.png)
P value = 0.0337 (Fisher's exact test), Q value = 0.042
Table S771. Gene #79: '21q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
21Q LOSS MUTATED | 2 | 9 | 28 | 13 | 10 | 17 | 2 | 5 |
21Q LOSS WILD-TYPE | 19 | 27 | 91 | 83 | 99 | 55 | 18 | 35 |
Figure S771. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D79V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S772. Gene #79: '21q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
21Q LOSS MUTATED | 79 | 22 | 17 | 53 | 9 |
21Q LOSS WILD-TYPE | 196 | 385 | 81 | 204 | 34 |
Figure S772. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D79V3.png)
P value = 0.00261 (Fisher's exact test), Q value = 0.0039
Table S773. Gene #79: '21q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
21Q LOSS MUTATED | 37 | 20 | 24 | 15 | 24 | 5 |
21Q LOSS WILD-TYPE | 107 | 79 | 189 | 108 | 111 | 54 |
Figure S773. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D79V4.png)
P value = 0.0173 (Fisher's exact test), Q value = 0.023
Table S774. Gene #79: '21q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
21Q LOSS MUTATED | 103 | 54 | 22 |
21Q LOSS WILD-TYPE | 456 | 250 | 190 |
Figure S774. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D79V7.png)
P value = 0.00383 (Fisher's exact test), Q value = 0.0055
Table S775. Gene #79: '21q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
21Q LOSS MUTATED | 50 | 41 | 6 | 40 | 33 | 9 |
21Q LOSS WILD-TYPE | 239 | 122 | 84 | 250 | 150 | 51 |
Figure S775. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D79V8.png)
P value = 0.011 (Fisher's exact test), Q value = 0.015
Table S776. Gene #79: '21q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
21Q LOSS MUTATED | 64 | 22 | 40 | 48 |
21Q LOSS WILD-TYPE | 241 | 190 | 229 | 227 |
Figure S776. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D79V9.png)
P value = 0.00632 (Fisher's exact test), Q value = 0.0088
Table S777. Gene #79: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
21Q LOSS MUTATED | 63 | 29 | 25 | 23 | 10 | 24 |
21Q LOSS WILD-TYPE | 231 | 123 | 220 | 117 | 86 | 110 |
Figure S777. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D79V10.png)
P value = 0.0192 (Fisher's exact test), Q value = 0.025
Table S778. Gene #79: '21q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
21Q LOSS MUTATED | 41 | 24 | 13 | 10 | 17 |
21Q LOSS WILD-TYPE | 139 | 115 | 86 | 101 | 116 |
Figure S778. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D79V11.png)
P value = 0.0052 (Fisher's exact test), Q value = 0.0074
Table S779. Gene #80: '22q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
22Q LOSS MUTATED | 62 | 72 | 46 | 34 | 22 |
22Q LOSS WILD-TYPE | 39 | 80 | 68 | 54 | 36 |
Figure S779. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D80V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S780. Gene #80: '22q loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
22Q LOSS MUTATED | 150 | 137 | 61 | 113 | 21 |
22Q LOSS WILD-TYPE | 125 | 270 | 37 | 144 | 22 |
Figure S780. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D80V3.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00021
Table S781. Gene #80: '22q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
22Q LOSS MUTATED | 88 | 45 | 85 | 44 | 62 | 18 |
22Q LOSS WILD-TYPE | 56 | 54 | 128 | 79 | 73 | 41 |
Figure S781. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D80V4.png)
P value = 0.00253 (Fisher's exact test), Q value = 0.0038
Table S782. Gene #80: '22q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
22Q LOSS MUTATED | 37 | 26 | 33 | 23 | 62 | 7 |
22Q LOSS WILD-TYPE | 27 | 20 | 57 | 29 | 54 | 24 |
Figure S782. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D80V6.png)
P value = 1e-04 (Fisher's exact test), Q value = 2e-04
Table S783. Gene #80: '22q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
22Q LOSS MUTATED | 285 | 113 | 83 |
22Q LOSS WILD-TYPE | 274 | 191 | 129 |
Figure S783. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D80V7.png)
P value = 4e-05 (Fisher's exact test), Q value = 8.3e-05
Table S784. Gene #80: '22q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
22Q LOSS MUTATED | 137 | 92 | 33 | 135 | 70 | 14 |
22Q LOSS WILD-TYPE | 152 | 71 | 57 | 155 | 113 | 46 |
Figure S784. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D80V8.png)
P value = 0.00319 (Fisher's exact test), Q value = 0.0047
Table S785. Gene #80: '22q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
22Q LOSS MUTATED | 129 | 75 | 138 | 130 |
22Q LOSS WILD-TYPE | 176 | 137 | 131 | 145 |
Figure S785. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D80V9.png)
P value = 0.00056 (Fisher's exact test), Q value = 0.00095
Table S786. Gene #80: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
22Q LOSS MUTATED | 160 | 60 | 92 | 69 | 38 | 53 |
22Q LOSS WILD-TYPE | 134 | 92 | 153 | 71 | 58 | 81 |
Figure S786. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D80V10.png)
P value = 0.00376 (Fisher's exact test), Q value = 0.0054
Table S787. Gene #80: '22q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
22Q LOSS MUTATED | 102 | 58 | 45 | 40 | 53 |
22Q LOSS WILD-TYPE | 78 | 81 | 54 | 71 | 80 |
Figure S787. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D80V11.png)
P value = 1e-04 (Fisher's exact test), Q value = 2e-04
Table S788. Gene #81: 'xp loss' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 36 | 119 | 96 | 109 | 72 | 20 | 40 |
XP LOSS MUTATED | 2 | 7 | 29 | 29 | 9 | 17 | 0 | 3 |
XP LOSS WILD-TYPE | 19 | 29 | 90 | 67 | 100 | 55 | 20 | 37 |
Figure S788. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D81V1.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00021
Table S789. Gene #81: 'xp loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
XP LOSS MUTATED | 28 | 17 | 21 | 26 | 4 |
XP LOSS WILD-TYPE | 73 | 135 | 93 | 62 | 54 |
Figure S789. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D81V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S790. Gene #81: 'xp loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
XP LOSS MUTATED | 75 | 23 | 14 | 73 | 5 |
XP LOSS WILD-TYPE | 200 | 384 | 84 | 184 | 38 |
Figure S790. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D81V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S791. Gene #81: 'xp loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
XP LOSS MUTATED | 39 | 21 | 19 | 10 | 32 | 8 |
XP LOSS WILD-TYPE | 105 | 78 | 194 | 113 | 103 | 51 |
Figure S791. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D81V4.png)
P value = 0.00216 (Fisher's exact test), Q value = 0.0033
Table S792. Gene #81: 'xp loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
XP LOSS MUTATED | 42 | 14 | 21 |
XP LOSS WILD-TYPE | 109 | 109 | 104 |
Figure S792. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D81V5.png)
P value = 0.00033 (Fisher's exact test), Q value = 0.00058
Table S793. Gene #81: 'xp loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
XP LOSS MUTATED | 7 | 1 | 27 | 9 | 25 | 8 |
XP LOSS WILD-TYPE | 57 | 45 | 63 | 43 | 91 | 23 |
Figure S793. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D81V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S794. Gene #81: 'xp loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
XP LOSS MUTATED | 96 | 76 | 16 |
XP LOSS WILD-TYPE | 463 | 228 | 196 |
Figure S794. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D81V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S795. Gene #81: 'xp loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
XP LOSS MUTATED | 59 | 36 | 3 | 32 | 50 | 8 |
XP LOSS WILD-TYPE | 230 | 127 | 87 | 258 | 133 | 52 |
Figure S795. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D81V8.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S796. Gene #81: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
XP LOSS MUTATED | 76 | 17 | 43 | 48 |
XP LOSS WILD-TYPE | 229 | 195 | 226 | 227 |
Figure S796. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D81V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 6.4e-05
Table S797. Gene #81: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
XP LOSS MUTATED | 64 | 24 | 24 | 16 | 17 | 39 |
XP LOSS WILD-TYPE | 230 | 128 | 221 | 124 | 79 | 95 |
Figure S797. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D81V10.png)
P value = 0.0055 (Fisher's exact test), Q value = 0.0077
Table S798. Gene #81: 'xp loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
XP LOSS MUTATED | 36 | 34 | 13 | 9 | 20 |
XP LOSS WILD-TYPE | 144 | 105 | 86 | 102 | 113 |
Figure S798. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D81V11.png)
P value = 0.00309 (Fisher's exact test), Q value = 0.0046
Table S799. Gene #81: 'xp loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
XP LOSS MUTATED | 68 | 32 | 12 |
XP LOSS WILD-TYPE | 237 | 215 | 98 |
Figure S799. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D81V12.png)
P value = 0.002 (Fisher's exact test), Q value = 0.0031
Table S800. Gene #82: 'xq loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 101 | 152 | 114 | 88 | 58 |
XQ LOSS MUTATED | 29 | 15 | 24 | 17 | 7 |
XQ LOSS WILD-TYPE | 72 | 137 | 90 | 71 | 51 |
Figure S800. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D82V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S801. Gene #82: 'xq loss' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 275 | 407 | 98 | 257 | 43 |
XQ LOSS MUTATED | 73 | 25 | 16 | 71 | 5 |
XQ LOSS WILD-TYPE | 202 | 382 | 82 | 186 | 38 |
Figure S801. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #3: 'CN_CNMF'
![](D82V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S802. Gene #82: 'xq loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 144 | 99 | 213 | 123 | 135 | 59 |
XQ LOSS MUTATED | 42 | 25 | 22 | 8 | 31 | 7 |
XQ LOSS WILD-TYPE | 102 | 74 | 191 | 115 | 104 | 52 |
Figure S802. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D82V4.png)
P value = 0.0455 (Fisher's exact test), Q value = 0.056
Table S803. Gene #82: 'xq loss' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 151 | 123 | 125 |
XQ LOSS MUTATED | 36 | 15 | 24 |
XQ LOSS WILD-TYPE | 115 | 108 | 101 |
Figure S803. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D82V5.png)
P value = 0.0153 (Fisher's exact test), Q value = 0.02
Table S804. Gene #82: 'xq loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 64 | 46 | 90 | 52 | 116 | 31 |
XQ LOSS MUTATED | 8 | 2 | 22 | 8 | 28 | 7 |
XQ LOSS WILD-TYPE | 56 | 44 | 68 | 44 | 88 | 24 |
Figure S804. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D82V6.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00025
Table S805. Gene #82: 'xq loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 559 | 304 | 212 |
XQ LOSS MUTATED | 102 | 69 | 18 |
XQ LOSS WILD-TYPE | 457 | 235 | 194 |
Figure S805. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D82V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 2.4e-05
Table S806. Gene #82: 'xq loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 289 | 163 | 90 | 290 | 183 | 60 |
XQ LOSS MUTATED | 58 | 44 | 4 | 36 | 41 | 6 |
XQ LOSS WILD-TYPE | 231 | 119 | 86 | 254 | 142 | 54 |
Figure S806. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D82V8.png)
P value = 2e-05 (Fisher's exact test), Q value = 4.3e-05
Table S807. Gene #82: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 305 | 212 | 269 | 275 |
XQ LOSS MUTATED | 71 | 16 | 47 | 53 |
XQ LOSS WILD-TYPE | 234 | 196 | 222 | 222 |
Figure S807. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D82V9.png)
P value = 0.00068 (Fisher's exact test), Q value = 0.0011
Table S808. Gene #82: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 152 | 245 | 140 | 96 | 134 |
XQ LOSS MUTATED | 69 | 23 | 26 | 19 | 18 | 32 |
XQ LOSS WILD-TYPE | 225 | 129 | 219 | 121 | 78 | 102 |
Figure S808. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D82V10.png)
P value = 0.0018 (Fisher's exact test), Q value = 0.0028
Table S809. Gene #82: 'xq loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 180 | 139 | 99 | 111 | 133 |
XQ LOSS MUTATED | 41 | 32 | 15 | 8 | 19 |
XQ LOSS WILD-TYPE | 139 | 107 | 84 | 103 | 114 |
Figure S809. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D82V11.png)
P value = 0.00167 (Fisher's exact test), Q value = 0.0026
Table S810. Gene #82: 'xq loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 305 | 247 | 110 |
XQ LOSS MUTATED | 70 | 34 | 11 |
XQ LOSS WILD-TYPE | 235 | 213 | 99 |
Figure S810. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D82V12.png)
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/20146428/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BRCA-TP/20125499/BRCA-TP.transferedmergedcluster.txt
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Number of patients = 1080
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Number of significantly arm-level cnvs = 82
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.