This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 79 genes and 12 molecular subtypes across 977 patients, 95 significant findings detected with P value < 0.05 and Q value < 0.25.
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PIK3CA mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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TP53 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
GATA3 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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MAP3K1 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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CDH1 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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CBFB mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
RUNX1 mutation correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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CDKN1B mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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MAP2K4 mutation correlated to 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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FOXA1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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CTCF mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
SPEN mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
-
ERBB2 mutation correlated to 'METHLYATION_CNMF'.
-
RAB42 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
-
MYB mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
MUC6 mutation correlated to 'MRNA_CNMF'.
-
EYS mutation correlated to 'MRNASEQ_CNMF'.
-
ZFP36L1 mutation correlated to 'CN_CNMF'.
-
FBXW7 mutation correlated to 'METHLYATION_CNMF'.
-
RHBG mutation correlated to 'MRNASEQ_CNMF'.
-
PHACTR1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
-
DLG1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
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GPRASP2 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.
-
CCDC82 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
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CCDC27 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
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OR8D1 mutation correlated to 'MRNA_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between mutation status of 79 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 95 significant findings detected.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
PIK3CA | 316 (32%) | 661 |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
0.00144 (0.0244) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
TP53 | 296 (30%) | 681 |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
CDH1 | 107 (11%) | 870 |
3e-05 (0.000729) |
0.00371 (0.0541) |
1e-05 (0.000249) |
1e-05 (0.000249) |
0.0101 (0.127) |
0.0136 (0.155) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
1e-05 (0.000249) |
GATA3 | 97 (10%) | 880 |
1e-05 (0.000249) |
1e-05 (0.000249) |
0.00091 (0.0169) |
0.00083 (0.0157) |
0.0147 (0.163) |
0.00083 (0.0157) |
1e-05 (0.000249) |
1e-05 (0.000249) |
0.00214 (0.035) |
1e-05 (0.000249) |
1e-05 (0.000249) |
0.113 (0.542) |
MAP3K1 | 71 (7%) | 906 |
4e-05 (0.000948) |
0.00018 (0.00416) |
0.00176 (0.0293) |
0.00347 (0.0522) |
0.00053 (0.0107) |
1e-05 (0.000249) |
0.00052 (0.0107) |
0.00026 (0.00573) |
0.00035 (0.00754) |
0.00103 (0.0188) |
0.11 (0.541) |
0.13 (0.577) |
MAP2K4 | 32 (3%) | 945 |
0.0581 (0.405) |
0.00437 (0.0618) |
0.0631 (0.421) |
0.00742 (0.102) |
0.00308 (0.0471) |
0.211 (0.723) |
0.00274 (0.0426) |
0.00365 (0.0541) |
0.0125 (0.145) |
0.00037 (0.00779) |
0.0118 (0.14) |
0.0122 (0.143) |
RUNX1 | 29 (3%) | 948 |
0.0153 (0.164) |
0.0864 (0.472) |
0.00864 (0.115) |
0.111 (0.541) |
0.343 (0.85) |
0.329 (0.837) |
0.0649 (0.425) |
0.0115 (0.138) |
0.0223 (0.233) |
0.404 (0.879) |
0.313 (0.826) |
0.454 (0.909) |
CBFB | 22 (2%) | 955 |
0.163 (0.64) |
0.307 (0.826) |
0.0834 (0.47) |
0.00077 (0.0152) |
0.142 (0.609) |
0.279 (0.826) |
0.0714 (0.442) |
0.611 (0.981) |
0.0288 (0.263) |
0.00019 (0.00429) |
0.0477 (0.374) |
0.00112 (0.02) |
CTCF | 16 (2%) | 961 |
0.0589 (0.408) |
0.0443 (0.359) |
0.023 (0.235) |
0.0147 (0.163) |
0.0483 (0.375) |
0.115 (0.546) |
0.119 (0.556) |
0.486 (0.917) |
0.0849 (0.471) |
0.0102 (0.127) |
0.945 (1.00) |
0.576 (0.967) |
FOXA1 | 23 (2%) | 954 |
0.37 (0.865) |
0.538 (0.952) |
0.334 (0.841) |
0.0753 (0.452) |
0.801 (1.00) |
0.749 (1.00) |
0.0578 (0.405) |
0.16 (0.631) |
0.0235 (0.237) |
0.0248 (0.247) |
0.184 (0.69) |
0.524 (0.946) |
GPRASP2 | 10 (1%) | 967 |
0.0137 (0.155) |
0.0107 (0.132) |
0.2 (0.713) |
0.482 (0.915) |
0.168 (0.649) |
0.538 (0.952) |
0.642 (0.988) |
0.253 (0.784) |
0.722 (1.00) |
0.627 (0.986) |
0.606 (0.981) |
0.672 (0.991) |
CDKN1B | 10 (1%) | 967 |
0.639 (0.988) |
0.739 (1.00) |
0.0694 (0.436) |
0.228 (0.747) |
0.743 (1.00) |
0.198 (0.712) |
0.1 (0.513) |
0.459 (0.909) |
0.448 (0.902) |
0.166 (0.643) |
0.391 (0.879) |
0.0151 (0.164) |
SPEN | 32 (3%) | 945 |
0.666 (0.991) |
0.788 (1.00) |
0.483 (0.915) |
0.464 (0.909) |
0.791 (1.00) |
0.0271 (0.259) |
0.207 (0.718) |
0.119 (0.557) |
0.213 (0.728) |
0.00913 (0.119) |
0.0943 (0.499) |
0.658 (0.991) |
ERBB2 | 20 (2%) | 957 |
0.575 (0.967) |
0.465 (0.909) |
0.0271 (0.259) |
0.00238 (0.0382) |
0.309 (0.826) |
0.955 (1.00) |
0.217 (0.731) |
0.134 (0.582) |
0.217 (0.731) |
0.106 (0.532) |
0.319 (0.835) |
0.603 (0.981) |
RAB42 | 4 (0%) | 973 |
0.408 (0.879) |
0.0679 (0.435) |
0.0413 (0.343) |
0.515 (0.941) |
0.388 (0.879) |
0.117 (0.552) |
0.156 (0.629) |
0.232 (0.749) |
0.00999 (0.127) |
|||
MYB | 12 (1%) | 965 |
0.736 (1.00) |
0.0285 (0.262) |
0.226 (0.745) |
0.323 (0.837) |
0.869 (1.00) |
0.696 (1.00) |
1 (1.00) |
0.901 (1.00) |
0.0972 (0.506) |
0.125 (0.564) |
0.283 (0.826) |
0.00127 (0.0223) |
MUC6 | 14 (1%) | 963 |
0.0206 (0.22) |
0.608 (0.981) |
0.506 (0.934) |
0.674 (0.991) |
0.479 (0.915) |
0.941 (1.00) |
0.0613 (0.418) |
0.204 (0.713) |
0.625 (0.986) |
0.112 (0.541) |
0.283 (0.826) |
0.0513 (0.389) |
EYS | 21 (2%) | 956 |
0.262 (0.794) |
0.285 (0.826) |
0.0325 (0.286) |
0.0651 (0.425) |
0.223 (0.742) |
0.383 (0.879) |
0.022 (0.231) |
0.202 (0.713) |
0.1 (0.513) |
0.0324 (0.286) |
0.371 (0.865) |
0.126 (0.566) |
ZFP36L1 | 8 (1%) | 969 |
0.401 (0.879) |
0.897 (1.00) |
0.00136 (0.0234) |
0.78 (1.00) |
0.0613 (0.418) |
0.0489 (0.377) |
0.184 (0.69) |
0.731 (1.00) |
0.895 (1.00) |
0.854 (1.00) |
0.949 (1.00) |
0.823 (1.00) |
FBXW7 | 15 (2%) | 962 |
0.815 (1.00) |
0.531 (0.946) |
0.157 (0.629) |
0.00732 (0.102) |
0.644 (0.988) |
0.94 (1.00) |
0.23 (0.748) |
0.145 (0.609) |
0.355 (0.85) |
0.101 (0.513) |
0.0629 (0.421) |
0.899 (1.00) |
RHBG | 4 (0%) | 973 |
0.895 (1.00) |
0.0077 (0.104) |
0.106 (0.532) |
0.524 (0.946) |
0.265 (0.796) |
|||||||
PHACTR1 | 7 (1%) | 970 |
0.416 (0.879) |
0.43 (0.887) |
0.815 (1.00) |
0.341 (0.85) |
0.166 (0.643) |
0.937 (1.00) |
0.201 (0.713) |
0.0795 (0.457) |
0.412 (0.879) |
0.0228 (0.235) |
1 (1.00) |
1 (1.00) |
DLG1 | 13 (1%) | 964 |
0.343 (0.85) |
0.32 (0.835) |
0.427 (0.883) |
0.572 (0.967) |
0.445 (0.899) |
0.114 (0.544) |
0.125 (0.564) |
0.186 (0.691) |
0.673 (0.991) |
0.0038 (0.0546) |
0.67 (0.991) |
0.805 (1.00) |
CCDC82 | 6 (1%) | 971 |
0.461 (0.909) |
0.0577 (0.405) |
0.303 (0.826) |
0.0365 (0.312) |
0.724 (1.00) |
0.349 (0.85) |
0.00243 (0.0384) |
0.309 (0.826) |
0.9 (1.00) |
1 (1.00) |
1 (1.00) |
|
CCDC27 | 7 (1%) | 970 |
0.088 (0.477) |
0.13 (0.577) |
0.0458 (0.365) |
0.0449 (0.36) |
0.11 (0.541) |
0.941 (1.00) |
0.0329 (0.286) |
0.264 (0.794) |
0.522 (0.946) |
0.0111 (0.135) |
0.0542 (0.4) |
1 (1.00) |
OR8D1 | 5 (1%) | 972 |
0.639 (0.988) |
0.00909 (0.119) |
0.646 (0.988) |
0.873 (1.00) |
0.692 (1.00) |
0.793 (1.00) |
0.338 (0.847) |
0.182 (0.687) |
0.774 (1.00) |
0.593 (0.981) |
||
PTEN | 35 (4%) | 942 |
0.31 (0.826) |
0.904 (1.00) |
0.17 (0.654) |
0.284 (0.826) |
0.855 (1.00) |
0.475 (0.915) |
1 (1.00) |
0.575 (0.967) |
0.135 (0.583) |
0.663 (0.991) |
0.652 (0.991) |
0.826 (1.00) |
MLL3 | 70 (7%) | 907 |
0.624 (0.986) |
0.0699 (0.436) |
0.684 (0.994) |
0.245 (0.771) |
0.604 (0.981) |
0.559 (0.964) |
0.196 (0.707) |
0.412 (0.879) |
0.192 (0.707) |
0.124 (0.564) |
0.407 (0.879) |
0.312 (0.826) |
ARID1A | 27 (3%) | 950 |
0.303 (0.826) |
0.941 (1.00) |
0.0383 (0.321) |
0.0848 (0.471) |
1 (1.00) |
0.195 (0.707) |
0.346 (0.85) |
0.644 (0.988) |
0.665 (0.991) |
0.398 (0.879) |
0.164 (0.64) |
0.565 (0.965) |
GPS2 | 10 (1%) | 967 |
0.0679 (0.435) |
0.0976 (0.506) |
0.0369 (0.312) |
0.417 (0.879) |
0.202 (0.713) |
0.631 (0.988) |
0.583 (0.973) |
0.0672 (0.435) |
0.11 (0.541) |
0.436 (0.893) |
0.481 (0.915) |
0.418 (0.879) |
TBX3 | 27 (3%) | 950 |
0.578 (0.968) |
0.626 (0.986) |
0.325 (0.837) |
0.288 (0.826) |
0.164 (0.64) |
0.967 (1.00) |
0.0439 (0.359) |
0.133 (0.578) |
0.0579 (0.405) |
0.125 (0.564) |
0.603 (0.981) |
0.722 (1.00) |
RB1 | 19 (2%) | 958 |
0.879 (1.00) |
0.305 (0.826) |
0.159 (0.631) |
0.153 (0.628) |
0.371 (0.865) |
0.607 (0.981) |
0.0272 (0.259) |
0.26 (0.794) |
0.057 (0.405) |
0.0275 (0.259) |
0.0936 (0.499) |
0.209 (0.72) |
RBMX | 13 (1%) | 964 |
0.385 (0.879) |
0.105 (0.532) |
0.0646 (0.425) |
0.53 (0.946) |
0.476 (0.915) |
0.848 (1.00) |
0.0686 (0.435) |
0.0285 (0.262) |
0.242 (0.769) |
0.573 (0.967) |
0.0688 (0.435) |
1 (1.00) |
HRNR | 31 (3%) | 946 |
0.988 (1.00) |
0.783 (1.00) |
0.353 (0.85) |
0.994 (1.00) |
0.655 (0.991) |
0.568 (0.965) |
0.494 (0.927) |
0.682 (0.994) |
0.596 (0.981) |
0.195 (0.707) |
0.148 (0.614) |
0.786 (1.00) |
ZMYM3 | 15 (2%) | 962 |
0.499 (0.927) |
0.441 (0.898) |
0.751 (1.00) |
0.671 (0.991) |
0.114 (0.544) |
0.654 (0.991) |
0.123 (0.564) |
0.486 (0.917) |
0.443 (0.899) |
0.97 (1.00) |
0.23 (0.748) |
0.856 (1.00) |
NCOR1 | 40 (4%) | 937 |
0.848 (1.00) |
0.903 (1.00) |
0.923 (1.00) |
0.615 (0.981) |
0.298 (0.826) |
0.614 (0.981) |
0.826 (1.00) |
0.53 (0.946) |
0.811 (1.00) |
0.122 (0.563) |
0.716 (1.00) |
0.783 (1.00) |
GPRIN2 | 11 (1%) | 966 |
0.604 (0.981) |
0.624 (0.986) |
0.98 (1.00) |
0.67 (0.991) |
0.777 (1.00) |
0.144 (0.609) |
0.467 (0.91) |
0.42 (0.881) |
0.371 (0.865) |
0.0628 (0.421) |
0.401 (0.879) |
0.666 (0.991) |
NF1 | 28 (3%) | 949 |
0.57 (0.965) |
0.805 (1.00) |
0.567 (0.965) |
0.224 (0.742) |
0.549 (0.96) |
0.233 (0.75) |
0.385 (0.879) |
0.417 (0.879) |
0.329 (0.837) |
0.677 (0.991) |
0.943 (1.00) |
0.542 (0.954) |
TCP11 | 6 (1%) | 971 |
0.785 (1.00) |
0.512 (0.938) |
0.456 (0.909) |
1 (1.00) |
0.61 (0.981) |
0.745 (1.00) |
0.374 (0.872) |
0.946 (1.00) |
0.761 (1.00) |
|||
SF3B1 | 16 (2%) | 961 |
0.846 (1.00) |
0.845 (1.00) |
0.539 (0.952) |
0.0765 (0.452) |
0.0776 (0.452) |
0.0788 (0.456) |
0.288 (0.826) |
0.356 (0.851) |
0.262 (0.794) |
0.387 (0.879) |
0.353 (0.85) |
0.247 (0.772) |
CDC42EP1 | 5 (1%) | 972 |
0.522 (0.946) |
0.462 (0.909) |
0.381 (0.879) |
0.327 (0.837) |
0.558 (0.964) |
0.473 (0.915) |
0.845 (1.00) |
0.561 (0.965) |
0.728 (1.00) |
0.306 (0.826) |
||
KDM6A | 15 (2%) | 962 |
0.74 (1.00) |
0.345 (0.85) |
0.535 (0.952) |
0.176 (0.671) |
0.508 (0.934) |
0.965 (1.00) |
0.304 (0.826) |
0.408 (0.879) |
0.675 (0.991) |
0.647 (0.988) |
0.759 (1.00) |
0.449 (0.902) |
AQP12A | 6 (1%) | 971 |
0.627 (0.986) |
0.726 (1.00) |
0.346 (0.85) |
0.543 (0.954) |
0.296 (0.826) |
0.435 (0.892) |
1 (1.00) |
1 (1.00) |
0.945 (1.00) |
0.497 (0.927) |
0.385 (0.879) |
1 (1.00) |
KRAS | 6 (1%) | 971 |
0.539 (0.952) |
0.632 (0.988) |
0.325 (0.837) |
0.506 (0.934) |
0.296 (0.826) |
0.512 (0.938) |
0.746 (1.00) |
0.0842 (0.471) |
0.852 (1.00) |
0.958 (1.00) |
0.922 (1.00) |
0.126 (0.564) |
NBPF9 | 5 (1%) | 972 |
0.614 (0.981) |
0.626 (0.986) |
0.804 (1.00) |
1 (1.00) |
0.641 (0.988) |
0.603 (0.981) |
0.155 (0.629) |
0.143 (0.609) |
0.301 (0.826) |
|||
ZNF362 | 5 (1%) | 972 |
0.879 (1.00) |
0.87 (1.00) |
0.091 (0.49) |
0.0761 (0.452) |
0.662 (0.991) |
0.41 (0.879) |
0.91 (1.00) |
0.0857 (0.472) |
0.415 (0.879) |
|||
TBL1XR1 | 9 (1%) | 968 |
0.158 (0.629) |
0.0812 (0.461) |
0.0506 (0.387) |
0.354 (0.85) |
0.155 (0.629) |
0.544 (0.954) |
0.566 (0.965) |
0.478 (0.915) |
0.553 (0.963) |
1 (1.00) |
0.0747 (0.452) |
|
SP3 | 7 (1%) | 970 |
0.882 (1.00) |
0.553 (0.963) |
0.558 (0.964) |
0.907 (1.00) |
0.879 (1.00) |
0.441 (0.898) |
0.398 (0.879) |
0.409 (0.879) |
0.319 (0.835) |
1 (1.00) |
||
FGFR2 | 11 (1%) | 966 |
0.917 (1.00) |
0.876 (1.00) |
0.329 (0.837) |
0.094 (0.499) |
0.868 (1.00) |
0.796 (1.00) |
0.79 (1.00) |
0.431 (0.887) |
0.226 (0.745) |
0.498 (0.927) |
0.608 (0.981) |
0.673 (0.991) |
ZBTB7C | 5 (1%) | 972 |
0.496 (0.927) |
0.307 (0.826) |
0.497 (0.927) |
0.678 (0.991) |
0.685 (0.994) |
0.921 (1.00) |
||||||
NCDN | 4 (0%) | 973 |
1 (1.00) |
0.791 (1.00) |
1 (1.00) |
0.403 (0.879) |
0.483 (0.915) |
0.82 (1.00) |
0.913 (1.00) |
0.841 (1.00) |
0.0519 (0.39) |
|||
TGS1 | 13 (1%) | 964 |
0.637 (0.988) |
0.666 (0.991) |
0.421 (0.881) |
0.236 (0.757) |
0.205 (0.713) |
0.558 (0.964) |
1 (1.00) |
0.245 (0.771) |
0.27 (0.808) |
0.46 (0.909) |
0.248 (0.773) |
0.354 (0.85) |
TFE3 | 7 (1%) | 970 |
0.676 (0.991) |
0.903 (1.00) |
0.741 (1.00) |
0.322 (0.837) |
1 (1.00) |
0.941 (1.00) |
0.786 (1.00) |
0.647 (0.988) |
0.751 (1.00) |
0.425 (0.881) |
0.856 (1.00) |
0.301 (0.826) |
IRS4 | 11 (1%) | 966 |
0.146 (0.609) |
0.782 (1.00) |
0.223 (0.742) |
0.683 (0.994) |
0.869 (1.00) |
0.847 (1.00) |
0.217 (0.731) |
0.47 (0.912) |
1 (1.00) |
0.174 (0.666) |
0.949 (1.00) |
0.824 (1.00) |
NLGN3 | 11 (1%) | 966 |
0.544 (0.954) |
0.562 (0.965) |
0.244 (0.771) |
0.153 (0.628) |
0.0546 (0.4) |
0.255 (0.788) |
0.789 (1.00) |
0.0812 (0.461) |
0.953 (1.00) |
0.747 (1.00) |
0.608 (0.981) |
0.673 (0.991) |
IL1RAP | 9 (1%) | 968 |
0.15 (0.622) |
0.301 (0.826) |
0.289 (0.826) |
0.644 (0.988) |
0.615 (0.981) |
0.897 (1.00) |
0.587 (0.976) |
0.686 (0.994) |
||||
USP36 | 8 (1%) | 969 |
0.835 (1.00) |
0.182 (0.687) |
0.968 (1.00) |
0.73 (1.00) |
0.642 (0.988) |
0.744 (1.00) |
0.457 (0.909) |
0.077 (0.452) |
0.676 (0.991) |
0.344 (0.85) |
||
CASZ1 | 14 (1%) | 963 |
0.936 (1.00) |
0.854 (1.00) |
0.903 (1.00) |
0.813 (1.00) |
0.204 (0.713) |
0.933 (1.00) |
0.822 (1.00) |
0.733 (1.00) |
0.518 (0.945) |
0.735 (1.00) |
0.425 (0.881) |
0.326 (0.837) |
KCNN3 | 9 (1%) | 968 |
0.144 (0.609) |
0.507 (0.934) |
0.252 (0.782) |
0.122 (0.563) |
0.391 (0.879) |
0.768 (1.00) |
0.287 (0.826) |
0.397 (0.879) |
0.304 (0.826) |
0.713 (1.00) |
0.58 (0.969) |
0.409 (0.879) |
ICOSLG | 5 (1%) | 972 |
0.772 (1.00) |
0.133 (0.578) |
0.0434 (0.358) |
0.833 (1.00) |
0.599 (0.981) |
0.968 (1.00) |
0.772 (1.00) |
0.467 (0.91) |
||||
ACTL6B | 10 (1%) | 967 |
0.353 (0.85) |
0.291 (0.826) |
0.0294 (0.266) |
0.353 (0.85) |
1 (1.00) |
0.194 (0.707) |
0.837 (1.00) |
0.194 (0.707) |
0.739 (1.00) |
0.714 (1.00) |
0.423 (0.881) |
0.714 (1.00) |
MYH9 | 18 (2%) | 959 |
0.396 (0.879) |
0.424 (0.881) |
0.366 (0.864) |
0.402 (0.879) |
0.821 (1.00) |
0.0538 (0.4) |
0.663 (0.991) |
0.146 (0.609) |
0.736 (1.00) |
0.402 (0.879) |
0.508 (0.934) |
0.261 (0.794) |
FRMPD2 | 13 (1%) | 964 |
0.529 (0.946) |
0.978 (1.00) |
0.465 (0.909) |
0.444 (0.899) |
0.558 (0.964) |
0.933 (1.00) |
1 (1.00) |
0.0548 (0.4) |
0.216 (0.731) |
0.73 (1.00) |
0.187 (0.691) |
0.756 (1.00) |
ZFP36L2 | 7 (1%) | 970 |
0.392 (0.879) |
1 (1.00) |
0.0276 (0.259) |
0.779 (1.00) |
1 (1.00) |
0.883 (1.00) |
0.526 (0.946) |
0.567 (0.965) |
0.785 (1.00) |
0.903 (1.00) |
0.361 (0.857) |
0.858 (1.00) |
TPP2 | 8 (1%) | 969 |
0.0866 (0.472) |
0.945 (1.00) |
0.637 (0.988) |
0.465 (0.909) |
0.363 (0.859) |
0.917 (1.00) |
0.53 (0.946) |
0.88 (1.00) |
0.875 (1.00) |
0.594 (0.981) |
||
C17ORF95 | 5 (1%) | 972 |
0.866 (1.00) |
0.858 (1.00) |
1 (1.00) |
0.842 (1.00) |
0.968 (1.00) |
0.727 (1.00) |
0.751 (1.00) |
|||||
RUFY1 | 6 (1%) | 971 |
0.387 (0.879) |
0.727 (1.00) |
0.313 (0.826) |
0.291 (0.826) |
0.653 (0.991) |
0.24 (0.765) |
0.851 (1.00) |
0.132 (0.578) |
0.899 (1.00) |
0.411 (0.879) |
||
MED23 | 14 (1%) | 963 |
0.0974 (0.506) |
0.283 (0.826) |
0.355 (0.85) |
0.0766 (0.452) |
0.0753 (0.452) |
0.222 (0.742) |
0.047 (0.372) |
0.0731 (0.45) |
0.353 (0.85) |
0.389 (0.879) |
0.283 (0.826) |
0.414 (0.879) |
PAX2 | 4 (0%) | 973 |
0.946 (1.00) |
0.335 (0.841) |
0.298 (0.826) |
0.204 (0.713) |
0.0567 (0.405) |
0.316 (0.832) |
0.287 (0.826) |
0.776 (1.00) |
0.477 (0.915) |
|||
MED12 | 21 (2%) | 956 |
0.84 (1.00) |
0.78 (1.00) |
0.398 (0.879) |
0.678 (0.991) |
0.263 (0.794) |
0.0777 (0.452) |
0.644 (0.988) |
0.41 (0.879) |
0.952 (1.00) |
0.88 (1.00) |
0.35 (0.85) |
0.481 (0.915) |
CHD4 | 19 (2%) | 958 |
0.233 (0.75) |
0.359 (0.855) |
0.845 (1.00) |
0.631 (0.988) |
0.292 (0.826) |
0.393 (0.879) |
0.554 (0.963) |
0.272 (0.809) |
0.299 (0.826) |
0.437 (0.893) |
0.75 (1.00) |
0.312 (0.826) |
PFKP | 6 (1%) | 971 |
0.481 (0.915) |
0.0255 (0.252) |
0.186 (0.691) |
0.392 (0.879) |
0.794 (1.00) |
0.418 (0.879) |
0.302 (0.826) |
0.309 (0.826) |
0.205 (0.713) |
|||
PSIP1 | 8 (1%) | 969 |
0.69 (0.998) |
0.719 (1.00) |
0.57 (0.965) |
0.756 (1.00) |
0.833 (1.00) |
0.965 (1.00) |
0.362 (0.858) |
0.936 (1.00) |
0.21 (0.72) |
0.455 (0.909) |
0.859 (1.00) |
0.133 (0.578) |
LRIG2 | 7 (1%) | 970 |
0.565 (0.965) |
0.0316 (0.282) |
0.247 (0.772) |
0.111 (0.541) |
0.157 (0.629) |
0.722 (1.00) |
0.461 (0.909) |
0.886 (1.00) |
0.621 (0.986) |
0.608 (0.981) |
0.857 (1.00) |
1 (1.00) |
RIBC1 | 4 (0%) | 973 |
0.59 (0.979) |
0.383 (0.879) |
0.757 (1.00) |
0.506 (0.934) |
0.527 (0.946) |
0.606 (0.981) |
0.447 (0.902) |
0.327 (0.837) |
||||
PLK2 | 9 (1%) | 968 |
0.297 (0.826) |
0.924 (1.00) |
0.975 (1.00) |
0.892 (1.00) |
0.911 (1.00) |
0.798 (1.00) |
0.97 (1.00) |
0.524 (0.946) |
0.82 (1.00) |
0.673 (0.991) |
||
ANKRD20A4 | 7 (1%) | 970 |
0.193 (0.707) |
0.0962 (0.506) |
0.715 (1.00) |
0.708 (1.00) |
0.645 (0.988) |
1 (1.00) |
0.231 (0.748) |
0.331 (0.839) |
0.881 (1.00) |
0.967 (1.00) |
0.48 (0.915) |
0.0365 (0.312) |
RHOA | 6 (1%) | 971 |
0.906 (1.00) |
0.587 (0.976) |
0.781 (1.00) |
0.938 (1.00) |
0.112 (0.541) |
0.603 (0.981) |
0.415 (0.879) |
0.259 (0.794) |
1 (1.00) |
0.796 (1.00) |
||
MAMLD1 | 10 (1%) | 967 |
0.919 (1.00) |
0.433 (0.891) |
0.624 (0.986) |
0.731 (1.00) |
0.332 (0.84) |
0.937 (1.00) |
0.702 (1.00) |
0.653 (0.991) |
0.495 (0.927) |
0.157 (0.629) |
0.256 (0.789) |
1 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S1. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PIK3CA MUTATED | 7 | 13 | 23 | 8 | 61 | 23 | 8 | 21 |
PIK3CA WILD-TYPE | 14 | 25 | 91 | 89 | 47 | 50 | 11 | 18 |
Figure S1. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D1V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S2. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PIK3CA MUTATED | 19 | 70 | 39 | 5 | 31 |
PIK3CA WILD-TYPE | 77 | 82 | 77 | 84 | 25 |
Figure S2. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D1V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S3. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PIK3CA MUTATED | 61 | 147 | 48 | 49 | 9 |
PIK3CA WILD-TYPE | 186 | 216 | 38 | 182 | 27 |
Figure S3. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D1V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S4. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
PIK3CA MUTATED | 30 | 32 | 94 | 33 | 7 | 20 |
PIK3CA WILD-TYPE | 90 | 52 | 95 | 68 | 109 | 34 |
Figure S4. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D1V4.png)
P value = 0.00144 (Fisher's exact test), Q value = 0.024
Table S5. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
PIK3CA MUTATED | 30 | 48 | 44 |
PIK3CA WILD-TYPE | 118 | 76 | 78 |
Figure S5. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D1V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S6. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
PIK3CA MUTATED | 30 | 24 | 12 | 23 | 27 | 6 |
PIK3CA WILD-TYPE | 29 | 24 | 78 | 30 | 86 | 25 |
Figure S6. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D1V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S7. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PIK3CA MUTATED | 187 | 44 | 85 |
PIK3CA WILD-TYPE | 318 | 235 | 105 |
Figure S7. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D1V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S8. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PIK3CA MUTATED | 79 | 55 | 34 | 125 | 7 | 16 |
PIK3CA WILD-TYPE | 184 | 96 | 45 | 136 | 161 | 36 |
Figure S8. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S9. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PIK3CA MUTATED | 43 | 70 | 97 | 104 |
PIK3CA WILD-TYPE | 229 | 107 | 136 | 172 |
Figure S9. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D1V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S10. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PIK3CA MUTATED | 99 | 32 | 89 | 73 | 15 | 6 |
PIK3CA WILD-TYPE | 176 | 104 | 117 | 61 | 72 | 114 |
Figure S10. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D1V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S11. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
PIK3CA MUTATED | 57 | 14 | 27 | 34 | 50 |
PIK3CA WILD-TYPE | 121 | 106 | 39 | 58 | 62 |
Figure S11. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D1V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S12. Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
PIK3CA MUTATED | 52 | 75 | 55 |
PIK3CA WILD-TYPE | 227 | 106 | 53 |
Figure S12. Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S13. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TP53 MUTATED | 7 | 6 | 18 | 74 | 6 | 41 | 7 | 6 |
TP53 WILD-TYPE | 14 | 32 | 96 | 23 | 102 | 32 | 12 | 33 |
Figure S13. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D2V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S14. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TP53 MUTATED | 12 | 17 | 65 | 69 | 2 |
TP53 WILD-TYPE | 84 | 135 | 51 | 20 | 54 |
Figure S14. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D2V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S15. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TP53 MUTATED | 59 | 52 | 8 | 166 | 8 |
TP53 WILD-TYPE | 188 | 311 | 78 | 65 | 28 |
Figure S15. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D2V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S16. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
TP53 MUTATED | 31 | 25 | 13 | 34 | 87 | 7 |
TP53 WILD-TYPE | 89 | 59 | 176 | 67 | 29 | 47 |
Figure S16. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D2V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S17. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
TP53 MUTATED | 97 | 33 | 8 |
TP53 WILD-TYPE | 51 | 91 | 114 |
Figure S17. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D2V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S18. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
TP53 MUTATED | 4 | 7 | 68 | 10 | 31 | 18 |
TP53 WILD-TYPE | 55 | 41 | 22 | 43 | 82 | 13 |
Figure S18. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D2V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S19. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TP53 MUTATED | 77 | 201 | 17 |
TP53 WILD-TYPE | 428 | 78 | 173 |
Figure S19. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D2V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S20. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TP53 MUTATED | 25 | 64 | 3 | 37 | 126 | 40 |
TP53 WILD-TYPE | 238 | 87 | 76 | 224 | 42 | 12 |
Figure S20. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S21. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TP53 MUTATED | 172 | 27 | 26 | 64 |
TP53 WILD-TYPE | 100 | 150 | 207 | 212 |
Figure S21. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D2V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S22. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TP53 MUTATED | 71 | 86 | 23 | 15 | 4 | 90 |
TP53 WILD-TYPE | 204 | 50 | 183 | 119 | 83 | 30 |
Figure S22. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D2V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S23. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
TP53 MUTATED | 30 | 91 | 9 | 18 | 24 |
TP53 WILD-TYPE | 148 | 29 | 57 | 74 | 88 |
Figure S23. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D2V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S24. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
TP53 MUTATED | 121 | 35 | 16 |
TP53 WILD-TYPE | 158 | 146 | 92 |
Figure S24. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D2V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S25. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
GATA3 MUTATED | 1 | 6 | 27 | 2 | 18 | 4 | 2 | 0 |
GATA3 WILD-TYPE | 20 | 32 | 87 | 95 | 90 | 69 | 17 | 39 |
Figure S25. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D3V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S26. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
GATA3 MUTATED | 28 | 22 | 5 | 1 | 4 |
GATA3 WILD-TYPE | 68 | 130 | 111 | 88 | 52 |
Figure S26. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D3V2.png)
P value = 0.00091 (Fisher's exact test), Q value = 0.017
Table S27. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
GATA3 MUTATED | 33 | 44 | 9 | 9 | 1 |
GATA3 WILD-TYPE | 214 | 319 | 77 | 222 | 35 |
Figure S27. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D3V3.png)
P value = 0.00083 (Fisher's exact test), Q value = 0.016
Table S28. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
GATA3 MUTATED | 14 | 11 | 21 | 5 | 1 | 7 |
GATA3 WILD-TYPE | 106 | 73 | 168 | 96 | 115 | 47 |
Figure S28. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D3V4.png)
P value = 0.0147 (Fisher's exact test), Q value = 0.16
Table S29. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
GATA3 MUTATED | 12 | 11 | 23 |
GATA3 WILD-TYPE | 136 | 113 | 99 |
Figure S29. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D3V5.png)
P value = 0.00083 (Fisher's exact test), Q value = 0.016
Table S30. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
GATA3 MUTATED | 12 | 4 | 2 | 4 | 21 | 3 |
GATA3 WILD-TYPE | 47 | 44 | 88 | 49 | 92 | 28 |
Figure S30. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D3V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S31. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
GATA3 MUTATED | 77 | 3 | 16 |
GATA3 WILD-TYPE | 428 | 276 | 174 |
Figure S31. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D3V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S32. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
GATA3 MUTATED | 46 | 14 | 3 | 33 | 0 | 0 |
GATA3 WILD-TYPE | 217 | 137 | 76 | 228 | 168 | 52 |
Figure S32. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.00214 (Fisher's exact test), Q value = 0.035
Table S33. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
GATA3 MUTATED | 14 | 14 | 28 | 39 |
GATA3 WILD-TYPE | 258 | 163 | 205 | 237 |
Figure S33. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D3V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S34. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
GATA3 MUTATED | 34 | 7 | 11 | 24 | 19 | 0 |
GATA3 WILD-TYPE | 241 | 129 | 195 | 110 | 68 | 120 |
Figure S34. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D3V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S35. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
GATA3 MUTATED | 33 | 0 | 5 | 10 | 9 |
GATA3 WILD-TYPE | 145 | 120 | 61 | 82 | 103 |
Figure S35. Get High-res Image Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D3V11.png)
P value = 0.113 (Fisher's exact test), Q value = 0.54
Table S36. Gene #3: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
GATA3 MUTATED | 30 | 12 | 15 |
GATA3 WILD-TYPE | 249 | 169 | 93 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00095
Table S37. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MAP3K1 MUTATED | 5 | 1 | 12 | 1 | 16 | 1 | 0 | 4 |
MAP3K1 WILD-TYPE | 16 | 37 | 102 | 96 | 92 | 72 | 19 | 35 |
Figure S36. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D4V1.png)
P value = 0.00018 (Fisher's exact test), Q value = 0.0042
Table S38. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MAP3K1 MUTATED | 9 | 14 | 4 | 1 | 12 |
MAP3K1 WILD-TYPE | 87 | 138 | 112 | 88 | 44 |
Figure S37. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D4V2.png)
P value = 0.00176 (Fisher's exact test), Q value = 0.029
Table S39. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MAP3K1 MUTATED | 15 | 40 | 7 | 6 | 3 |
MAP3K1 WILD-TYPE | 232 | 323 | 79 | 225 | 33 |
Figure S38. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D4V3.png)
P value = 0.00347 (Fisher's exact test), Q value = 0.052
Table S40. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MAP3K1 MUTATED | 5 | 1 | 21 | 7 | 2 | 4 |
MAP3K1 WILD-TYPE | 115 | 83 | 168 | 94 | 114 | 50 |
Figure S39. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D4V4.png)
P value = 0.00053 (Fisher's exact test), Q value = 0.011
Table S41. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MAP3K1 MUTATED | 4 | 14 | 19 |
MAP3K1 WILD-TYPE | 144 | 110 | 103 |
Figure S40. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D4V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S42. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MAP3K1 MUTATED | 16 | 8 | 1 | 7 | 5 | 0 |
MAP3K1 WILD-TYPE | 43 | 40 | 89 | 46 | 108 | 31 |
Figure S41. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D4V6.png)
P value = 0.00052 (Fisher's exact test), Q value = 0.011
Table S43. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MAP3K1 MUTATED | 47 | 7 | 17 |
MAP3K1 WILD-TYPE | 458 | 272 | 173 |
Figure S42. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D4V7.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.0057
Table S44. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MAP3K1 MUTATED | 31 | 8 | 7 | 22 | 3 | 0 |
MAP3K1 WILD-TYPE | 232 | 143 | 72 | 239 | 165 | 52 |
Figure S43. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D4V8.png)
P value = 0.00035 (Fisher's exact test), Q value = 0.0075
Table S45. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MAP3K1 MUTATED | 6 | 17 | 23 | 25 |
MAP3K1 WILD-TYPE | 266 | 160 | 210 | 251 |
Figure S44. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D4V9.png)
P value = 0.00103 (Fisher's exact test), Q value = 0.019
Table S46. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MAP3K1 MUTATED | 19 | 4 | 24 | 11 | 11 | 2 |
MAP3K1 WILD-TYPE | 256 | 132 | 182 | 123 | 76 | 118 |
Figure S45. Get High-res Image Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D4V10.png)
P value = 0.11 (Fisher's exact test), Q value = 0.54
Table S47. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MAP3K1 MUTATED | 15 | 3 | 3 | 10 | 7 |
MAP3K1 WILD-TYPE | 163 | 117 | 63 | 82 | 105 |
P value = 0.13 (Fisher's exact test), Q value = 0.58
Table S48. Gene #4: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MAP3K1 MUTATED | 15 | 11 | 12 |
MAP3K1 WILD-TYPE | 264 | 170 | 96 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00073
Table S49. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CDH1 MUTATED | 0 | 6 | 1 | 1 | 10 | 7 | 1 | 7 |
CDH1 WILD-TYPE | 21 | 32 | 113 | 96 | 98 | 66 | 18 | 32 |
Figure S46. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D5V1.png)
P value = 0.00371 (Fisher's exact test), Q value = 0.054
Table S50. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CDH1 MUTATED | 3 | 19 | 8 | 1 | 2 |
CDH1 WILD-TYPE | 93 | 133 | 108 | 88 | 54 |
Figure S47. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D5V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S51. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CDH1 MUTATED | 13 | 60 | 24 | 3 | 5 |
CDH1 WILD-TYPE | 234 | 303 | 62 | 228 | 31 |
Figure S48. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D5V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S52. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CDH1 MUTATED | 4 | 17 | 39 | 20 | 0 | 8 |
CDH1 WILD-TYPE | 116 | 67 | 150 | 81 | 116 | 46 |
Figure S49. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D5V4.png)
P value = 0.0101 (Fisher's exact test), Q value = 0.13
Table S53. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CDH1 MUTATED | 4 | 14 | 5 |
CDH1 WILD-TYPE | 144 | 110 | 117 |
Figure S50. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D5V5.png)
P value = 0.0136 (Fisher's exact test), Q value = 0.16
Table S54. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CDH1 MUTATED | 1 | 7 | 1 | 5 | 7 | 2 |
CDH1 WILD-TYPE | 58 | 41 | 89 | 48 | 106 | 29 |
Figure S51. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D5V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S55. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CDH1 MUTATED | 50 | 7 | 50 |
CDH1 WILD-TYPE | 455 | 272 | 140 |
Figure S52. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D5V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S56. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CDH1 MUTATED | 12 | 11 | 29 | 51 | 1 | 3 |
CDH1 WILD-TYPE | 251 | 140 | 50 | 210 | 167 | 49 |
Figure S53. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S57. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CDH1 MUTATED | 4 | 49 | 40 | 12 |
CDH1 WILD-TYPE | 268 | 128 | 193 | 264 |
Figure S54. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D5V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S58. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CDH1 MUTATED | 13 | 3 | 68 | 19 | 2 | 0 |
CDH1 WILD-TYPE | 262 | 133 | 138 | 115 | 85 | 120 |
Figure S55. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D5V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S59. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CDH1 MUTATED | 9 | 1 | 20 | 12 | 33 |
CDH1 WILD-TYPE | 169 | 119 | 46 | 80 | 79 |
Figure S56. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D5V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00025
Table S60. Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CDH1 MUTATED | 9 | 56 | 10 |
CDH1 WILD-TYPE | 270 | 125 | 98 |
Figure S57. Get High-res Image Gene #5: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V12.png)
P value = 0.163 (Fisher's exact test), Q value = 0.64
Table S61. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CBFB MUTATED | 1 | 1 | 0 | 1 | 5 | 2 | 0 | 0 |
CBFB WILD-TYPE | 20 | 37 | 114 | 96 | 103 | 71 | 19 | 39 |
P value = 0.307 (Fisher's exact test), Q value = 0.83
Table S62. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CBFB MUTATED | 0 | 5 | 2 | 1 | 2 |
CBFB WILD-TYPE | 96 | 147 | 114 | 88 | 54 |
P value = 0.0834 (Fisher's exact test), Q value = 0.47
Table S63. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CBFB MUTATED | 6 | 11 | 4 | 1 | 0 |
CBFB WILD-TYPE | 241 | 352 | 82 | 230 | 36 |
P value = 0.00077 (Fisher's exact test), Q value = 0.015
Table S64. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CBFB MUTATED | 0 | 2 | 12 | 1 | 0 | 0 |
CBFB WILD-TYPE | 120 | 82 | 177 | 100 | 116 | 54 |
Figure S58. Get High-res Image Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D6V4.png)
P value = 0.142 (Fisher's exact test), Q value = 0.61
Table S65. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CBFB MUTATED | 1 | 3 | 5 |
CBFB WILD-TYPE | 147 | 121 | 117 |
P value = 0.279 (Fisher's exact test), Q value = 0.83
Table S66. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CBFB MUTATED | 4 | 1 | 2 | 1 | 1 | 0 |
CBFB WILD-TYPE | 55 | 47 | 88 | 52 | 112 | 31 |
P value = 0.0714 (Fisher's exact test), Q value = 0.44
Table S67. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CBFB MUTATED | 16 | 2 | 4 |
CBFB WILD-TYPE | 489 | 277 | 186 |
P value = 0.611 (Fisher's exact test), Q value = 0.98
Table S68. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CBFB MUTATED | 7 | 3 | 2 | 8 | 1 | 1 |
CBFB WILD-TYPE | 256 | 148 | 77 | 253 | 167 | 51 |
P value = 0.0288 (Fisher's exact test), Q value = 0.26
Table S69. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CBFB MUTATED | 1 | 5 | 9 | 6 |
CBFB WILD-TYPE | 271 | 172 | 224 | 270 |
Figure S59. Get High-res Image Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D6V9.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.0043
Table S70. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CBFB MUTATED | 6 | 0 | 3 | 11 | 1 | 0 |
CBFB WILD-TYPE | 269 | 136 | 203 | 123 | 86 | 120 |
Figure S60. Get High-res Image Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D6V10.png)
P value = 0.0477 (Fisher's exact test), Q value = 0.37
Table S71. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CBFB MUTATED | 6 | 0 | 1 | 5 | 1 |
CBFB WILD-TYPE | 172 | 120 | 65 | 87 | 111 |
Figure S61. Get High-res Image Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D6V11.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.02
Table S72. Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CBFB MUTATED | 4 | 1 | 8 |
CBFB WILD-TYPE | 275 | 180 | 100 |
Figure S62. Get High-res Image Gene #6: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V12.png)
P value = 0.31 (Fisher's exact test), Q value = 0.83
Table S73. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PTEN MUTATED | 2 | 2 | 3 | 1 | 4 | 1 | 0 | 0 |
PTEN WILD-TYPE | 19 | 36 | 111 | 96 | 104 | 72 | 19 | 39 |
P value = 0.904 (Fisher's exact test), Q value = 1
Table S74. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PTEN MUTATED | 3 | 5 | 3 | 1 | 1 |
PTEN WILD-TYPE | 93 | 147 | 113 | 88 | 55 |
P value = 0.17 (Fisher's exact test), Q value = 0.65
Table S75. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PTEN MUTATED | 6 | 14 | 7 | 8 | 0 |
PTEN WILD-TYPE | 241 | 349 | 79 | 223 | 36 |
P value = 0.284 (Fisher's exact test), Q value = 0.83
Table S76. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
PTEN MUTATED | 4 | 6 | 7 | 7 | 5 | 0 |
PTEN WILD-TYPE | 116 | 78 | 182 | 94 | 111 | 54 |
P value = 0.855 (Fisher's exact test), Q value = 1
Table S77. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
PTEN MUTATED | 3 | 3 | 4 |
PTEN WILD-TYPE | 145 | 121 | 118 |
P value = 0.475 (Fisher's exact test), Q value = 0.91
Table S78. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
PTEN MUTATED | 2 | 3 | 2 | 0 | 3 | 0 |
PTEN WILD-TYPE | 57 | 45 | 88 | 53 | 110 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
Table S79. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PTEN MUTATED | 18 | 10 | 7 |
PTEN WILD-TYPE | 487 | 269 | 183 |
P value = 0.575 (Fisher's exact test), Q value = 0.97
Table S80. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PTEN MUTATED | 7 | 6 | 5 | 9 | 5 | 3 |
PTEN WILD-TYPE | 256 | 145 | 74 | 252 | 163 | 49 |
P value = 0.135 (Fisher's exact test), Q value = 0.58
Table S81. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PTEN MUTATED | 7 | 12 | 7 | 9 |
PTEN WILD-TYPE | 265 | 165 | 226 | 267 |
P value = 0.663 (Fisher's exact test), Q value = 0.99
Table S82. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PTEN MUTATED | 12 | 5 | 10 | 3 | 1 | 4 |
PTEN WILD-TYPE | 263 | 131 | 196 | 131 | 86 | 116 |
P value = 0.652 (Fisher's exact test), Q value = 0.99
Table S83. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
PTEN MUTATED | 7 | 3 | 3 | 5 | 7 |
PTEN WILD-TYPE | 171 | 117 | 63 | 87 | 105 |
P value = 0.826 (Fisher's exact test), Q value = 1
Table S84. Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
PTEN MUTATED | 11 | 9 | 5 |
PTEN WILD-TYPE | 268 | 172 | 103 |
P value = 0.0153 (Fisher's exact test), Q value = 0.16
Table S85. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RUNX1 MUTATED | 3 | 1 | 3 | 0 | 5 | 2 | 0 | 4 |
RUNX1 WILD-TYPE | 18 | 37 | 111 | 97 | 103 | 71 | 19 | 35 |
Figure S63. Get High-res Image Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D8V1.png)
P value = 0.0864 (Fisher's exact test), Q value = 0.47
Table S86. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RUNX1 MUTATED | 3 | 10 | 3 | 0 | 2 |
RUNX1 WILD-TYPE | 93 | 142 | 113 | 89 | 54 |
P value = 0.00864 (Fisher's exact test), Q value = 0.12
Table S87. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RUNX1 MUTATED | 4 | 16 | 6 | 2 | 0 |
RUNX1 WILD-TYPE | 243 | 347 | 80 | 229 | 36 |
Figure S64. Get High-res Image Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D8V3.png)
P value = 0.111 (Fisher's exact test), Q value = 0.54
Table S88. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
RUNX1 MUTATED | 0 | 4 | 6 | 5 | 2 | 2 |
RUNX1 WILD-TYPE | 120 | 80 | 183 | 96 | 114 | 52 |
P value = 0.343 (Fisher's exact test), Q value = 0.85
Table S89. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
RUNX1 MUTATED | 5 | 4 | 1 |
RUNX1 WILD-TYPE | 143 | 120 | 121 |
P value = 0.329 (Fisher's exact test), Q value = 0.84
Table S90. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
RUNX1 MUTATED | 1 | 2 | 0 | 2 | 4 | 1 |
RUNX1 WILD-TYPE | 58 | 46 | 90 | 51 | 109 | 30 |
P value = 0.0649 (Fisher's exact test), Q value = 0.43
Table S91. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RUNX1 MUTATED | 15 | 4 | 10 |
RUNX1 WILD-TYPE | 490 | 275 | 180 |
P value = 0.0115 (Fisher's exact test), Q value = 0.14
Table S92. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RUNX1 MUTATED | 4 | 9 | 4 | 11 | 1 | 0 |
RUNX1 WILD-TYPE | 259 | 142 | 75 | 250 | 167 | 52 |
Figure S65. Get High-res Image Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D8V8.png)
P value = 0.0223 (Fisher's exact test), Q value = 0.23
Table S93. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RUNX1 MUTATED | 2 | 9 | 7 | 11 |
RUNX1 WILD-TYPE | 270 | 168 | 226 | 265 |
Figure S66. Get High-res Image Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D8V9.png)
P value = 0.404 (Fisher's exact test), Q value = 0.88
Table S94. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RUNX1 MUTATED | 11 | 2 | 7 | 6 | 2 | 1 |
RUNX1 WILD-TYPE | 264 | 134 | 199 | 128 | 85 | 119 |
P value = 0.313 (Fisher's exact test), Q value = 0.83
Table S95. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
RUNX1 MUTATED | 5 | 2 | 1 | 6 | 5 |
RUNX1 WILD-TYPE | 173 | 118 | 65 | 86 | 107 |
P value = 0.454 (Fisher's exact test), Q value = 0.91
Table S96. Gene #8: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
RUNX1 MUTATED | 7 | 8 | 4 |
RUNX1 WILD-TYPE | 272 | 173 | 104 |
P value = 0.624 (Fisher's exact test), Q value = 0.99
Table S97. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MLL3 MUTATED | 2 | 1 | 8 | 5 | 12 | 4 | 1 | 4 |
MLL3 WILD-TYPE | 19 | 37 | 106 | 92 | 96 | 69 | 18 | 35 |
P value = 0.0699 (Fisher's exact test), Q value = 0.44
Table S98. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MLL3 MUTATED | 6 | 10 | 6 | 5 | 10 |
MLL3 WILD-TYPE | 90 | 142 | 110 | 84 | 46 |
P value = 0.684 (Fisher's exact test), Q value = 0.99
Table S99. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MLL3 MUTATED | 17 | 30 | 7 | 12 | 2 |
MLL3 WILD-TYPE | 230 | 333 | 79 | 219 | 34 |
P value = 0.245 (Fisher's exact test), Q value = 0.77
Table S100. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MLL3 MUTATED | 9 | 9 | 18 | 5 | 4 | 5 |
MLL3 WILD-TYPE | 111 | 75 | 171 | 96 | 112 | 49 |
P value = 0.604 (Fisher's exact test), Q value = 0.98
Table S101. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MLL3 MUTATED | 10 | 10 | 6 |
MLL3 WILD-TYPE | 138 | 114 | 116 |
P value = 0.559 (Fisher's exact test), Q value = 0.96
Table S102. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MLL3 MUTATED | 6 | 4 | 7 | 3 | 4 | 2 |
MLL3 WILD-TYPE | 53 | 44 | 83 | 50 | 109 | 29 |
P value = 0.196 (Fisher's exact test), Q value = 0.71
Table S103. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MLL3 MUTATED | 43 | 14 | 13 |
MLL3 WILD-TYPE | 462 | 265 | 177 |
P value = 0.412 (Fisher's exact test), Q value = 0.88
Table S104. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MLL3 MUTATED | 22 | 15 | 3 | 19 | 8 | 3 |
MLL3 WILD-TYPE | 241 | 136 | 76 | 242 | 160 | 49 |
P value = 0.192 (Fisher's exact test), Q value = 0.71
Table S105. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MLL3 MUTATED | 12 | 12 | 19 | 24 |
MLL3 WILD-TYPE | 260 | 165 | 214 | 252 |
P value = 0.124 (Fisher's exact test), Q value = 0.56
Table S106. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MLL3 MUTATED | 18 | 7 | 14 | 16 | 8 | 4 |
MLL3 WILD-TYPE | 257 | 129 | 192 | 118 | 79 | 116 |
P value = 0.407 (Fisher's exact test), Q value = 0.88
Table S107. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MLL3 MUTATED | 16 | 4 | 4 | 5 | 8 |
MLL3 WILD-TYPE | 162 | 116 | 62 | 87 | 104 |
P value = 0.312 (Fisher's exact test), Q value = 0.83
Table S108. Gene #9: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MLL3 MUTATED | 14 | 14 | 9 |
MLL3 WILD-TYPE | 265 | 167 | 99 |
P value = 0.639 (Fisher's exact test), Q value = 0.99
Table S109. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CDKN1B MUTATED | 0 | 0 | 1 | 0 | 3 | 1 | 0 | 1 |
CDKN1B WILD-TYPE | 21 | 38 | 113 | 97 | 105 | 72 | 19 | 38 |
P value = 0.739 (Fisher's exact test), Q value = 1
Table S110. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CDKN1B MUTATED | 1 | 3 | 1 | 0 | 1 |
CDKN1B WILD-TYPE | 95 | 149 | 115 | 89 | 55 |
P value = 0.0694 (Fisher's exact test), Q value = 0.44
Table S111. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CDKN1B MUTATED | 0 | 5 | 3 | 2 | 0 |
CDKN1B WILD-TYPE | 247 | 358 | 83 | 229 | 36 |
P value = 0.228 (Fisher's exact test), Q value = 0.75
Table S112. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CDKN1B MUTATED | 0 | 0 | 4 | 2 | 0 | 0 |
CDKN1B WILD-TYPE | 120 | 84 | 185 | 99 | 116 | 54 |
P value = 0.743 (Fisher's exact test), Q value = 1
Table S113. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CDKN1B MUTATED | 1 | 2 | 2 |
CDKN1B WILD-TYPE | 147 | 122 | 120 |
P value = 0.198 (Fisher's exact test), Q value = 0.71
Table S114. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CDKN1B MUTATED | 2 | 0 | 0 | 2 | 1 | 0 |
CDKN1B WILD-TYPE | 57 | 48 | 90 | 51 | 112 | 31 |
P value = 0.1 (Fisher's exact test), Q value = 0.51
Table S115. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CDKN1B MUTATED | 7 | 0 | 3 |
CDKN1B WILD-TYPE | 498 | 279 | 187 |
P value = 0.459 (Fisher's exact test), Q value = 0.91
Table S116. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CDKN1B MUTATED | 2 | 2 | 1 | 5 | 0 | 0 |
CDKN1B WILD-TYPE | 261 | 149 | 78 | 256 | 168 | 52 |
P value = 0.448 (Fisher's exact test), Q value = 0.9
Table S117. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CDKN1B MUTATED | 1 | 3 | 2 | 4 |
CDKN1B WILD-TYPE | 271 | 174 | 231 | 272 |
P value = 0.166 (Fisher's exact test), Q value = 0.64
Table S118. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CDKN1B MUTATED | 3 | 0 | 3 | 4 | 0 | 0 |
CDKN1B WILD-TYPE | 272 | 136 | 203 | 130 | 87 | 120 |
P value = 0.391 (Fisher's exact test), Q value = 0.88
Table S119. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CDKN1B MUTATED | 1 | 0 | 1 | 2 | 1 |
CDKN1B WILD-TYPE | 177 | 120 | 65 | 90 | 111 |
P value = 0.0151 (Fisher's exact test), Q value = 0.16
Table S120. Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CDKN1B MUTATED | 0 | 2 | 3 |
CDKN1B WILD-TYPE | 279 | 179 | 105 |
Figure S67. Get High-res Image Gene #10: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D10V12.png)
P value = 0.0581 (Fisher's exact test), Q value = 0.41
Table S121. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MAP2K4 MUTATED | 0 | 3 | 3 | 0 | 8 | 2 | 1 | 2 |
MAP2K4 WILD-TYPE | 21 | 35 | 111 | 97 | 100 | 71 | 18 | 37 |
P value = 0.00437 (Fisher's exact test), Q value = 0.062
Table S122. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MAP2K4 MUTATED | 2 | 9 | 2 | 0 | 6 |
MAP2K4 WILD-TYPE | 94 | 143 | 114 | 89 | 50 |
Figure S68. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D11V2.png)
P value = 0.0631 (Fisher's exact test), Q value = 0.42
Table S123. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MAP2K4 MUTATED | 7 | 14 | 5 | 3 | 3 |
MAP2K4 WILD-TYPE | 240 | 349 | 81 | 228 | 33 |
P value = 0.00742 (Fisher's exact test), Q value = 0.1
Table S124. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MAP2K4 MUTATED | 9 | 2 | 11 | 1 | 0 | 2 |
MAP2K4 WILD-TYPE | 111 | 82 | 178 | 100 | 116 | 52 |
Figure S69. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D11V4.png)
P value = 0.00308 (Fisher's exact test), Q value = 0.047
Table S125. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MAP2K4 MUTATED | 0 | 8 | 5 |
MAP2K4 WILD-TYPE | 148 | 116 | 117 |
Figure S70. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D11V5.png)
P value = 0.211 (Fisher's exact test), Q value = 0.72
Table S126. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MAP2K4 MUTATED | 2 | 4 | 1 | 3 | 3 | 0 |
MAP2K4 WILD-TYPE | 57 | 44 | 89 | 50 | 110 | 31 |
P value = 0.00274 (Fisher's exact test), Q value = 0.043
Table S127. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MAP2K4 MUTATED | 25 | 2 | 5 |
MAP2K4 WILD-TYPE | 480 | 277 | 185 |
Figure S71. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D11V7.png)
P value = 0.00365 (Fisher's exact test), Q value = 0.054
Table S128. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MAP2K4 MUTATED | 17 | 4 | 2 | 9 | 0 | 0 |
MAP2K4 WILD-TYPE | 246 | 147 | 77 | 252 | 168 | 52 |
Figure S72. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.14
Table S129. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MAP2K4 MUTATED | 3 | 5 | 7 | 17 |
MAP2K4 WILD-TYPE | 269 | 172 | 226 | 259 |
Figure S73. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D11V9.png)
P value = 0.00037 (Fisher's exact test), Q value = 0.0078
Table S130. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MAP2K4 MUTATED | 12 | 1 | 3 | 10 | 6 | 0 |
MAP2K4 WILD-TYPE | 263 | 135 | 203 | 124 | 81 | 120 |
Figure S74. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D11V10.png)
P value = 0.0118 (Fisher's exact test), Q value = 0.14
Table S131. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MAP2K4 MUTATED | 11 | 0 | 0 | 3 | 3 |
MAP2K4 WILD-TYPE | 167 | 120 | 66 | 89 | 109 |
Figure S75. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
![](D11V11.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.14
Table S132. Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MAP2K4 MUTATED | 7 | 2 | 8 |
MAP2K4 WILD-TYPE | 272 | 179 | 100 |
Figure S76. Get High-res Image Gene #11: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V12.png)
P value = 0.303 (Fisher's exact test), Q value = 0.83
Table S133. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ARID1A MUTATED | 3 | 1 | 4 | 2 | 3 | 1 | 0 | 1 |
ARID1A WILD-TYPE | 18 | 37 | 110 | 95 | 105 | 72 | 19 | 38 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S134. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ARID1A MUTATED | 4 | 5 | 3 | 2 | 1 |
ARID1A WILD-TYPE | 92 | 147 | 113 | 87 | 55 |
P value = 0.0383 (Fisher's exact test), Q value = 0.32
Table S135. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ARID1A MUTATED | 12 | 9 | 0 | 3 | 2 |
ARID1A WILD-TYPE | 235 | 354 | 86 | 228 | 34 |
Figure S77. Get High-res Image Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D12V3.png)
P value = 0.0848 (Fisher's exact test), Q value = 0.47
Table S136. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ARID1A MUTATED | 8 | 1 | 5 | 1 | 1 | 2 |
ARID1A WILD-TYPE | 112 | 83 | 184 | 100 | 115 | 52 |
P value = 1 (Fisher's exact test), Q value = 1
Table S137. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ARID1A MUTATED | 4 | 3 | 3 |
ARID1A WILD-TYPE | 144 | 121 | 119 |
P value = 0.195 (Fisher's exact test), Q value = 0.71
Table S138. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ARID1A MUTATED | 2 | 0 | 1 | 0 | 5 | 2 |
ARID1A WILD-TYPE | 57 | 48 | 89 | 53 | 108 | 29 |
P value = 0.346 (Fisher's exact test), Q value = 0.85
Table S139. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ARID1A MUTATED | 18 | 5 | 4 |
ARID1A WILD-TYPE | 487 | 274 | 186 |
P value = 0.644 (Fisher's exact test), Q value = 0.99
Table S140. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ARID1A MUTATED | 8 | 5 | 1 | 10 | 2 | 1 |
ARID1A WILD-TYPE | 255 | 146 | 78 | 251 | 166 | 51 |
P value = 0.665 (Fisher's exact test), Q value = 0.99
Table S141. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ARID1A MUTATED | 5 | 5 | 8 | 9 |
ARID1A WILD-TYPE | 267 | 172 | 225 | 267 |
P value = 0.398 (Fisher's exact test), Q value = 0.88
Table S142. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ARID1A MUTATED | 8 | 5 | 3 | 4 | 5 | 2 |
ARID1A WILD-TYPE | 267 | 131 | 203 | 130 | 82 | 118 |
P value = 0.164 (Fisher's exact test), Q value = 0.64
Table S143. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ARID1A MUTATED | 5 | 0 | 3 | 1 | 2 |
ARID1A WILD-TYPE | 173 | 120 | 63 | 91 | 110 |
P value = 0.565 (Fisher's exact test), Q value = 0.97
Table S144. Gene #12: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ARID1A MUTATED | 4 | 5 | 2 |
ARID1A WILD-TYPE | 275 | 176 | 106 |
P value = 0.37 (Fisher's exact test), Q value = 0.87
Table S145. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
FOXA1 MUTATED | 0 | 0 | 3 | 0 | 1 | 2 | 0 | 2 |
FOXA1 WILD-TYPE | 21 | 38 | 111 | 97 | 107 | 71 | 19 | 37 |
P value = 0.538 (Fisher's exact test), Q value = 0.95
Table S146. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
FOXA1 MUTATED | 3 | 2 | 2 | 0 | 1 |
FOXA1 WILD-TYPE | 93 | 150 | 114 | 89 | 55 |
P value = 0.334 (Fisher's exact test), Q value = 0.84
Table S147. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
FOXA1 MUTATED | 6 | 11 | 3 | 2 | 1 |
FOXA1 WILD-TYPE | 241 | 352 | 83 | 229 | 35 |
P value = 0.0753 (Fisher's exact test), Q value = 0.45
Table S148. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
FOXA1 MUTATED | 3 | 6 | 5 | 3 | 0 | 1 |
FOXA1 WILD-TYPE | 117 | 78 | 184 | 98 | 116 | 53 |
P value = 0.801 (Fisher's exact test), Q value = 1
Table S149. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
FOXA1 MUTATED | 2 | 2 | 3 |
FOXA1 WILD-TYPE | 146 | 122 | 119 |
P value = 0.749 (Fisher's exact test), Q value = 1
Table S150. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
FOXA1 MUTATED | 1 | 1 | 1 | 0 | 4 | 0 |
FOXA1 WILD-TYPE | 58 | 47 | 89 | 53 | 109 | 31 |
P value = 0.0578 (Fisher's exact test), Q value = 0.41
Table S151. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
FOXA1 MUTATED | 14 | 2 | 7 |
FOXA1 WILD-TYPE | 491 | 277 | 183 |
P value = 0.16 (Fisher's exact test), Q value = 0.63
Table S152. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
FOXA1 MUTATED | 5 | 5 | 1 | 11 | 1 | 0 |
FOXA1 WILD-TYPE | 258 | 146 | 78 | 250 | 167 | 52 |
P value = 0.0235 (Fisher's exact test), Q value = 0.24
Table S153. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
FOXA1 MUTATED | 3 | 7 | 10 | 3 |
FOXA1 WILD-TYPE | 269 | 170 | 223 | 273 |
Figure S78. Get High-res Image Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D13V9.png)
P value = 0.0248 (Fisher's exact test), Q value = 0.25
Table S154. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
FOXA1 MUTATED | 3 | 2 | 6 | 9 | 2 | 1 |
FOXA1 WILD-TYPE | 272 | 134 | 200 | 125 | 85 | 119 |
Figure S79. Get High-res Image Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D13V10.png)
P value = 0.184 (Fisher's exact test), Q value = 0.69
Table S155. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
FOXA1 MUTATED | 6 | 0 | 3 | 2 | 3 |
FOXA1 WILD-TYPE | 172 | 120 | 63 | 90 | 109 |
P value = 0.524 (Fisher's exact test), Q value = 0.95
Table S156. Gene #13: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
FOXA1 MUTATED | 5 | 6 | 3 |
FOXA1 WILD-TYPE | 274 | 175 | 105 |
P value = 0.0679 (Fisher's exact test), Q value = 0.43
Table S157. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
GPS2 MUTATED | 0 | 3 | 2 | 0 | 1 | 0 | 0 | 1 |
GPS2 WILD-TYPE | 21 | 35 | 112 | 97 | 107 | 73 | 19 | 38 |
P value = 0.0976 (Fisher's exact test), Q value = 0.51
Table S158. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
GPS2 MUTATED | 2 | 5 | 0 | 0 | 0 |
GPS2 WILD-TYPE | 94 | 147 | 116 | 89 | 56 |
P value = 0.0369 (Fisher's exact test), Q value = 0.31
Table S159. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
GPS2 MUTATED | 1 | 9 | 0 | 0 | 0 |
GPS2 WILD-TYPE | 246 | 354 | 86 | 231 | 36 |
Figure S80. Get High-res Image Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D14V3.png)
P value = 0.417 (Fisher's exact test), Q value = 0.88
Table S160. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
GPS2 MUTATED | 1 | 2 | 1 | 0 | 2 | 1 |
GPS2 WILD-TYPE | 119 | 82 | 188 | 101 | 114 | 53 |
P value = 0.202 (Fisher's exact test), Q value = 0.71
Table S161. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
GPS2 MUTATED | 0 | 1 | 2 |
GPS2 WILD-TYPE | 148 | 123 | 120 |
P value = 0.631 (Fisher's exact test), Q value = 0.99
Table S162. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
GPS2 MUTATED | 1 | 1 | 0 | 0 | 1 | 0 |
GPS2 WILD-TYPE | 58 | 47 | 90 | 53 | 112 | 31 |
P value = 0.583 (Fisher's exact test), Q value = 0.97
Table S163. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
GPS2 MUTATED | 5 | 2 | 3 |
GPS2 WILD-TYPE | 500 | 277 | 187 |
P value = 0.0672 (Fisher's exact test), Q value = 0.43
Table S164. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
GPS2 MUTATED | 2 | 0 | 1 | 5 | 0 | 2 |
GPS2 WILD-TYPE | 261 | 151 | 78 | 256 | 168 | 50 |
P value = 0.11 (Fisher's exact test), Q value = 0.54
Table S165. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
GPS2 MUTATED | 2 | 1 | 6 | 1 |
GPS2 WILD-TYPE | 270 | 176 | 227 | 275 |
P value = 0.436 (Fisher's exact test), Q value = 0.89
Table S166. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
GPS2 MUTATED | 4 | 3 | 1 | 2 | 0 | 0 |
GPS2 WILD-TYPE | 271 | 133 | 205 | 132 | 87 | 120 |
P value = 0.481 (Fisher's exact test), Q value = 0.91
Table S167. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
GPS2 MUTATED | 1 | 0 | 1 | 1 | 2 |
GPS2 WILD-TYPE | 177 | 120 | 65 | 91 | 110 |
P value = 0.418 (Fisher's exact test), Q value = 0.88
Table S168. Gene #14: 'GPS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
GPS2 MUTATED | 2 | 3 | 0 |
GPS2 WILD-TYPE | 277 | 178 | 108 |
P value = 0.578 (Fisher's exact test), Q value = 0.97
Table S169. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TBX3 MUTATED | 0 | 1 | 3 | 2 | 7 | 1 | 0 | 2 |
TBX3 WILD-TYPE | 21 | 37 | 111 | 95 | 101 | 72 | 19 | 37 |
P value = 0.626 (Fisher's exact test), Q value = 0.99
Table S170. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TBX3 MUTATED | 3 | 6 | 3 | 1 | 3 |
TBX3 WILD-TYPE | 93 | 146 | 113 | 88 | 53 |
P value = 0.325 (Fisher's exact test), Q value = 0.84
Table S171. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TBX3 MUTATED | 6 | 13 | 4 | 3 | 1 |
TBX3 WILD-TYPE | 241 | 350 | 82 | 228 | 35 |
P value = 0.288 (Fisher's exact test), Q value = 0.83
Table S172. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
TBX3 MUTATED | 1 | 2 | 9 | 2 | 1 | 1 |
TBX3 WILD-TYPE | 119 | 82 | 180 | 99 | 115 | 53 |
P value = 0.164 (Fisher's exact test), Q value = 0.64
Table S173. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
TBX3 MUTATED | 1 | 5 | 4 |
TBX3 WILD-TYPE | 147 | 119 | 118 |
P value = 0.967 (Fisher's exact test), Q value = 1
Table S174. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
TBX3 MUTATED | 2 | 1 | 2 | 1 | 4 | 0 |
TBX3 WILD-TYPE | 57 | 47 | 88 | 52 | 109 | 31 |
P value = 0.0439 (Fisher's exact test), Q value = 0.36
Table S175. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TBX3 MUTATED | 15 | 3 | 9 |
TBX3 WILD-TYPE | 490 | 276 | 181 |
Figure S81. Get High-res Image Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D15V7.png)
P value = 0.133 (Fisher's exact test), Q value = 0.58
Table S176. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TBX3 MUTATED | 6 | 2 | 5 | 11 | 2 | 1 |
TBX3 WILD-TYPE | 257 | 149 | 74 | 250 | 166 | 51 |
P value = 0.0579 (Fisher's exact test), Q value = 0.41
Table S177. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TBX3 MUTATED | 5 | 4 | 13 | 5 |
TBX3 WILD-TYPE | 267 | 173 | 220 | 271 |
P value = 0.125 (Fisher's exact test), Q value = 0.56
Table S178. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TBX3 MUTATED | 5 | 2 | 8 | 6 | 5 | 1 |
TBX3 WILD-TYPE | 270 | 134 | 198 | 128 | 82 | 119 |
P value = 0.603 (Fisher's exact test), Q value = 0.98
Table S179. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
TBX3 MUTATED | 3 | 2 | 3 | 2 | 4 |
TBX3 WILD-TYPE | 175 | 118 | 63 | 90 | 108 |
P value = 0.722 (Fisher's exact test), Q value = 1
Table S180. Gene #15: 'TBX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
TBX3 MUTATED | 6 | 6 | 2 |
TBX3 WILD-TYPE | 273 | 175 | 106 |
P value = 0.879 (Fisher's exact test), Q value = 1
Table S181. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RB1 MUTATED | 0 | 0 | 2 | 4 | 2 | 2 | 0 | 0 |
RB1 WILD-TYPE | 21 | 38 | 112 | 93 | 106 | 71 | 19 | 39 |
P value = 0.305 (Fisher's exact test), Q value = 0.83
Table S182. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RB1 MUTATED | 2 | 1 | 4 | 3 | 0 |
RB1 WILD-TYPE | 94 | 151 | 112 | 86 | 56 |
P value = 0.159 (Fisher's exact test), Q value = 0.63
Table S183. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RB1 MUTATED | 4 | 4 | 4 | 7 | 0 |
RB1 WILD-TYPE | 243 | 359 | 82 | 224 | 36 |
P value = 0.153 (Fisher's exact test), Q value = 0.63
Table S184. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
RB1 MUTATED | 1 | 2 | 2 | 0 | 5 | 1 |
RB1 WILD-TYPE | 119 | 82 | 187 | 101 | 111 | 53 |
P value = 0.371 (Fisher's exact test), Q value = 0.87
Table S185. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
RB1 MUTATED | 5 | 1 | 3 |
RB1 WILD-TYPE | 143 | 123 | 119 |
P value = 0.607 (Fisher's exact test), Q value = 0.98
Table S186. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
RB1 MUTATED | 1 | 0 | 4 | 2 | 2 | 0 |
RB1 WILD-TYPE | 58 | 48 | 86 | 51 | 111 | 31 |
P value = 0.0272 (Fisher's exact test), Q value = 0.26
Table S187. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RB1 MUTATED | 10 | 9 | 0 |
RB1 WILD-TYPE | 495 | 270 | 190 |
Figure S82. Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D16V7.png)
P value = 0.26 (Fisher's exact test), Q value = 0.79
Table S188. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RB1 MUTATED | 4 | 5 | 0 | 3 | 6 | 1 |
RB1 WILD-TYPE | 259 | 146 | 79 | 258 | 162 | 51 |
P value = 0.057 (Fisher's exact test), Q value = 0.41
Table S189. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RB1 MUTATED | 8 | 0 | 2 | 6 |
RB1 WILD-TYPE | 264 | 177 | 231 | 270 |
P value = 0.0275 (Fisher's exact test), Q value = 0.26
Table S190. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RB1 MUTATED | 5 | 6 | 0 | 3 | 0 | 2 |
RB1 WILD-TYPE | 270 | 130 | 206 | 131 | 87 | 118 |
Figure S83. Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D16V10.png)
P value = 0.0936 (Fisher's exact test), Q value = 0.5
Table S191. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
RB1 MUTATED | 2 | 6 | 0 | 3 | 1 |
RB1 WILD-TYPE | 176 | 114 | 66 | 89 | 111 |
P value = 0.209 (Fisher's exact test), Q value = 0.72
Table S192. Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
RB1 MUTATED | 8 | 1 | 3 |
RB1 WILD-TYPE | 271 | 180 | 105 |
P value = 0.0589 (Fisher's exact test), Q value = 0.41
Table S193. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CTCF MUTATED | 1 | 0 | 2 | 1 | 8 | 0 | 0 | 1 |
CTCF WILD-TYPE | 20 | 38 | 112 | 96 | 100 | 73 | 19 | 38 |
P value = 0.0443 (Fisher's exact test), Q value = 0.36
Table S194. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CTCF MUTATED | 3 | 3 | 1 | 1 | 5 |
CTCF WILD-TYPE | 93 | 149 | 115 | 88 | 51 |
Figure S84. Get High-res Image Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D17V2.png)
P value = 0.023 (Fisher's exact test), Q value = 0.23
Table S195. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CTCF MUTATED | 2 | 13 | 0 | 1 | 0 |
CTCF WILD-TYPE | 245 | 350 | 86 | 230 | 36 |
Figure S85. Get High-res Image Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D17V3.png)
P value = 0.0147 (Fisher's exact test), Q value = 0.16
Table S196. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CTCF MUTATED | 0 | 0 | 8 | 1 | 0 | 1 |
CTCF WILD-TYPE | 120 | 84 | 181 | 100 | 116 | 53 |
Figure S86. Get High-res Image Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D17V4.png)
P value = 0.0483 (Fisher's exact test), Q value = 0.38
Table S197. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CTCF MUTATED | 1 | 3 | 7 |
CTCF WILD-TYPE | 147 | 121 | 115 |
Figure S87. Get High-res Image Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D17V5.png)
P value = 0.115 (Fisher's exact test), Q value = 0.55
Table S198. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CTCF MUTATED | 5 | 0 | 1 | 1 | 4 | 0 |
CTCF WILD-TYPE | 54 | 48 | 89 | 52 | 109 | 31 |
P value = 0.119 (Fisher's exact test), Q value = 0.56
Table S199. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CTCF MUTATED | 11 | 1 | 4 |
CTCF WILD-TYPE | 494 | 278 | 186 |
P value = 0.486 (Fisher's exact test), Q value = 0.92
Table S200. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CTCF MUTATED | 7 | 1 | 1 | 6 | 1 | 0 |
CTCF WILD-TYPE | 256 | 150 | 78 | 255 | 167 | 52 |
P value = 0.0849 (Fisher's exact test), Q value = 0.47
Table S201. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CTCF MUTATED | 1 | 2 | 7 | 6 |
CTCF WILD-TYPE | 271 | 175 | 226 | 270 |
P value = 0.0102 (Fisher's exact test), Q value = 0.13
Table S202. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CTCF MUTATED | 2 | 2 | 4 | 2 | 6 | 0 |
CTCF WILD-TYPE | 273 | 134 | 202 | 132 | 81 | 120 |
Figure S88. Get High-res Image Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D17V10.png)
P value = 0.945 (Fisher's exact test), Q value = 1
Table S203. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CTCF MUTATED | 3 | 1 | 0 | 1 | 1 |
CTCF WILD-TYPE | 175 | 119 | 66 | 91 | 111 |
P value = 0.576 (Fisher's exact test), Q value = 0.97
Table S204. Gene #17: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CTCF MUTATED | 3 | 1 | 2 |
CTCF WILD-TYPE | 276 | 180 | 106 |
P value = 0.385 (Fisher's exact test), Q value = 0.88
Table S205. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RBMX MUTATED | 0 | 0 | 0 | 3 | 2 | 0 | 0 | 1 |
RBMX WILD-TYPE | 21 | 38 | 114 | 94 | 106 | 73 | 19 | 38 |
P value = 0.105 (Fisher's exact test), Q value = 0.53
Table S206. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RBMX MUTATED | 0 | 3 | 0 | 3 | 0 |
RBMX WILD-TYPE | 96 | 149 | 116 | 86 | 56 |
P value = 0.0646 (Fisher's exact test), Q value = 0.43
Table S207. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RBMX MUTATED | 0 | 5 | 1 | 6 | 1 |
RBMX WILD-TYPE | 247 | 358 | 85 | 225 | 35 |
P value = 0.53 (Fisher's exact test), Q value = 0.95
Table S208. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
RBMX MUTATED | 1 | 2 | 1 | 2 | 3 | 1 |
RBMX WILD-TYPE | 119 | 82 | 188 | 99 | 113 | 53 |
P value = 0.476 (Fisher's exact test), Q value = 0.91
Table S209. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
RBMX MUTATED | 2 | 0 | 2 |
RBMX WILD-TYPE | 146 | 124 | 120 |
P value = 0.848 (Fisher's exact test), Q value = 1
Table S210. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
RBMX MUTATED | 1 | 0 | 2 | 0 | 1 | 0 |
RBMX WILD-TYPE | 58 | 48 | 88 | 53 | 112 | 31 |
P value = 0.0686 (Fisher's exact test), Q value = 0.43
Table S211. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RBMX MUTATED | 3 | 7 | 3 |
RBMX WILD-TYPE | 502 | 272 | 187 |
P value = 0.0285 (Fisher's exact test), Q value = 0.26
Table S212. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RBMX MUTATED | 0 | 1 | 0 | 6 | 5 | 1 |
RBMX WILD-TYPE | 263 | 150 | 79 | 255 | 163 | 51 |
Figure S89. Get High-res Image Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 0.242 (Fisher's exact test), Q value = 0.77
Table S213. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RBMX MUTATED | 6 | 3 | 3 | 1 |
RBMX WILD-TYPE | 266 | 174 | 230 | 275 |
P value = 0.573 (Fisher's exact test), Q value = 0.97
Table S214. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RBMX MUTATED | 3 | 4 | 2 | 2 | 0 | 2 |
RBMX WILD-TYPE | 272 | 132 | 204 | 132 | 87 | 118 |
P value = 0.0688 (Fisher's exact test), Q value = 0.43
Table S215. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
RBMX MUTATED | 0 | 4 | 0 | 1 | 2 |
RBMX WILD-TYPE | 178 | 116 | 66 | 91 | 110 |
P value = 1 (Fisher's exact test), Q value = 1
Table S216. Gene #18: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
RBMX MUTATED | 4 | 2 | 1 |
RBMX WILD-TYPE | 275 | 179 | 107 |
P value = 0.988 (Fisher's exact test), Q value = 1
Table S217. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
HRNR MUTATED | 0 | 1 | 5 | 5 | 4 | 4 | 0 | 1 |
HRNR WILD-TYPE | 21 | 37 | 109 | 92 | 104 | 69 | 19 | 38 |
P value = 0.783 (Fisher's exact test), Q value = 1
Table S218. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
HRNR MUTATED | 2 | 7 | 4 | 5 | 2 |
HRNR WILD-TYPE | 94 | 145 | 112 | 84 | 54 |
P value = 0.353 (Fisher's exact test), Q value = 0.85
Table S219. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
HRNR MUTATED | 5 | 12 | 5 | 7 | 2 |
HRNR WILD-TYPE | 242 | 351 | 81 | 224 | 34 |
P value = 0.994 (Fisher's exact test), Q value = 1
Table S220. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
HRNR MUTATED | 3 | 2 | 6 | 3 | 4 | 2 |
HRNR WILD-TYPE | 117 | 82 | 183 | 98 | 112 | 52 |
P value = 0.655 (Fisher's exact test), Q value = 0.99
Table S221. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
HRNR MUTATED | 5 | 7 | 4 |
HRNR WILD-TYPE | 143 | 117 | 118 |
P value = 0.568 (Fisher's exact test), Q value = 0.97
Table S222. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
HRNR MUTATED | 2 | 0 | 3 | 3 | 6 | 2 |
HRNR WILD-TYPE | 57 | 48 | 87 | 50 | 107 | 29 |
P value = 0.494 (Fisher's exact test), Q value = 0.93
Table S223. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
HRNR MUTATED | 13 | 11 | 7 |
HRNR WILD-TYPE | 492 | 268 | 183 |
P value = 0.682 (Fisher's exact test), Q value = 0.99
Table S224. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
HRNR MUTATED | 8 | 3 | 3 | 7 | 7 | 3 |
HRNR WILD-TYPE | 255 | 148 | 76 | 254 | 161 | 49 |
P value = 0.596 (Fisher's exact test), Q value = 0.98
Table S225. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
HRNR MUTATED | 11 | 3 | 7 | 9 |
HRNR WILD-TYPE | 261 | 174 | 226 | 267 |
P value = 0.195 (Fisher's exact test), Q value = 0.71
Table S226. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
HRNR MUTATED | 6 | 7 | 4 | 6 | 5 | 2 |
HRNR WILD-TYPE | 269 | 129 | 202 | 128 | 82 | 118 |
P value = 0.148 (Fisher's exact test), Q value = 0.61
Table S227. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
HRNR MUTATED | 6 | 4 | 0 | 0 | 5 |
HRNR WILD-TYPE | 172 | 116 | 66 | 92 | 107 |
P value = 0.786 (Fisher's exact test), Q value = 1
Table S228. Gene #19: 'HRNR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
HRNR MUTATED | 9 | 4 | 2 |
HRNR WILD-TYPE | 270 | 177 | 106 |
P value = 0.499 (Fisher's exact test), Q value = 0.93
Table S229. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ZMYM3 MUTATED | 1 | 0 | 1 | 4 | 4 | 1 | 0 | 0 |
ZMYM3 WILD-TYPE | 20 | 38 | 113 | 93 | 104 | 72 | 19 | 39 |
P value = 0.441 (Fisher's exact test), Q value = 0.9
Table S230. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ZMYM3 MUTATED | 1 | 4 | 1 | 4 | 1 |
ZMYM3 WILD-TYPE | 95 | 148 | 115 | 85 | 55 |
P value = 0.751 (Fisher's exact test), Q value = 1
Table S231. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ZMYM3 MUTATED | 2 | 8 | 1 | 4 | 0 |
ZMYM3 WILD-TYPE | 245 | 355 | 85 | 227 | 36 |
P value = 0.671 (Fisher's exact test), Q value = 0.99
Table S232. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ZMYM3 MUTATED | 2 | 1 | 1 | 1 | 3 | 0 |
ZMYM3 WILD-TYPE | 118 | 83 | 188 | 100 | 113 | 54 |
P value = 0.114 (Fisher's exact test), Q value = 0.54
Table S233. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ZMYM3 MUTATED | 5 | 0 | 2 |
ZMYM3 WILD-TYPE | 143 | 124 | 120 |
P value = 0.654 (Fisher's exact test), Q value = 0.99
Table S234. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ZMYM3 MUTATED | 1 | 0 | 3 | 0 | 2 | 1 |
ZMYM3 WILD-TYPE | 58 | 48 | 87 | 53 | 111 | 30 |
P value = 0.123 (Fisher's exact test), Q value = 0.56
Table S235. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ZMYM3 MUTATED | 10 | 5 | 0 |
ZMYM3 WILD-TYPE | 495 | 274 | 190 |
P value = 0.486 (Fisher's exact test), Q value = 0.92
Table S236. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ZMYM3 MUTATED | 2 | 3 | 0 | 6 | 4 | 0 |
ZMYM3 WILD-TYPE | 261 | 148 | 79 | 255 | 164 | 52 |
P value = 0.443 (Fisher's exact test), Q value = 0.9
Table S237. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ZMYM3 MUTATED | 6 | 1 | 5 | 3 |
ZMYM3 WILD-TYPE | 266 | 176 | 228 | 273 |
P value = 0.97 (Fisher's exact test), Q value = 1
Table S238. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ZMYM3 MUTATED | 6 | 2 | 3 | 1 | 1 | 2 |
ZMYM3 WILD-TYPE | 269 | 134 | 203 | 133 | 86 | 118 |
P value = 0.23 (Fisher's exact test), Q value = 0.75
Table S239. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ZMYM3 MUTATED | 2 | 0 | 2 | 0 | 1 |
ZMYM3 WILD-TYPE | 176 | 120 | 64 | 92 | 111 |
P value = 0.856 (Fisher's exact test), Q value = 1
Table S240. Gene #20: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ZMYM3 MUTATED | 2 | 2 | 1 |
ZMYM3 WILD-TYPE | 277 | 179 | 107 |
P value = 0.848 (Fisher's exact test), Q value = 1
Table S241. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
NCOR1 MUTATED | 0 | 2 | 4 | 3 | 6 | 3 | 0 | 0 |
NCOR1 WILD-TYPE | 21 | 36 | 110 | 94 | 102 | 70 | 19 | 39 |
P value = 0.903 (Fisher's exact test), Q value = 1
Table S242. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
NCOR1 MUTATED | 3 | 6 | 3 | 3 | 3 |
NCOR1 WILD-TYPE | 93 | 146 | 113 | 86 | 53 |
P value = 0.923 (Fisher's exact test), Q value = 1
Table S243. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
NCOR1 MUTATED | 10 | 17 | 2 | 8 | 1 |
NCOR1 WILD-TYPE | 237 | 346 | 84 | 223 | 35 |
P value = 0.615 (Fisher's exact test), Q value = 0.98
Table S244. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
NCOR1 MUTATED | 4 | 7 | 8 | 4 | 4 | 3 |
NCOR1 WILD-TYPE | 116 | 77 | 181 | 97 | 112 | 51 |
P value = 0.298 (Fisher's exact test), Q value = 0.83
Table S245. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
NCOR1 MUTATED | 5 | 5 | 1 |
NCOR1 WILD-TYPE | 143 | 119 | 121 |
P value = 0.614 (Fisher's exact test), Q value = 0.98
Table S246. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
NCOR1 MUTATED | 1 | 2 | 2 | 2 | 2 | 2 |
NCOR1 WILD-TYPE | 58 | 46 | 88 | 51 | 111 | 29 |
P value = 0.826 (Fisher's exact test), Q value = 1
Table S247. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
NCOR1 MUTATED | 23 | 10 | 7 |
NCOR1 WILD-TYPE | 482 | 269 | 183 |
P value = 0.53 (Fisher's exact test), Q value = 0.95
Table S248. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
NCOR1 MUTATED | 7 | 10 | 3 | 12 | 6 | 2 |
NCOR1 WILD-TYPE | 256 | 141 | 76 | 249 | 162 | 50 |
P value = 0.811 (Fisher's exact test), Q value = 1
Table S249. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
NCOR1 MUTATED | 10 | 9 | 11 | 10 |
NCOR1 WILD-TYPE | 262 | 168 | 222 | 266 |
P value = 0.122 (Fisher's exact test), Q value = 0.56
Table S250. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
NCOR1 MUTATED | 18 | 5 | 7 | 6 | 0 | 4 |
NCOR1 WILD-TYPE | 257 | 131 | 199 | 128 | 87 | 116 |
P value = 0.716 (Fisher's exact test), Q value = 1
Table S251. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
NCOR1 MUTATED | 7 | 4 | 3 | 1 | 4 |
NCOR1 WILD-TYPE | 171 | 116 | 63 | 91 | 108 |
P value = 0.783 (Fisher's exact test), Q value = 1
Table S252. Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
NCOR1 MUTATED | 8 | 7 | 4 |
NCOR1 WILD-TYPE | 271 | 174 | 104 |
P value = 0.604 (Fisher's exact test), Q value = 0.98
Table S253. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
GPRIN2 MUTATED | 0 | 1 | 0 | 2 | 3 | 1 | 0 | 0 |
GPRIN2 WILD-TYPE | 21 | 37 | 114 | 95 | 105 | 72 | 19 | 39 |
P value = 0.624 (Fisher's exact test), Q value = 0.99
Table S254. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
GPRIN2 MUTATED | 0 | 3 | 1 | 2 | 1 |
GPRIN2 WILD-TYPE | 96 | 149 | 115 | 87 | 55 |
P value = 0.98 (Fisher's exact test), Q value = 1
Table S255. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
GPRIN2 MUTATED | 3 | 5 | 1 | 2 | 0 |
GPRIN2 WILD-TYPE | 244 | 358 | 85 | 229 | 36 |
P value = 0.67 (Fisher's exact test), Q value = 0.99
Table S256. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
GPRIN2 MUTATED | 1 | 2 | 2 | 0 | 2 | 0 |
GPRIN2 WILD-TYPE | 119 | 82 | 187 | 101 | 114 | 54 |
P value = 0.777 (Fisher's exact test), Q value = 1
Table S257. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
GPRIN2 MUTATED | 3 | 1 | 2 |
GPRIN2 WILD-TYPE | 145 | 123 | 120 |
P value = 0.144 (Fisher's exact test), Q value = 0.61
Table S258. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
GPRIN2 MUTATED | 2 | 0 | 1 | 0 | 1 | 2 |
GPRIN2 WILD-TYPE | 57 | 48 | 89 | 53 | 112 | 29 |
P value = 0.467 (Fisher's exact test), Q value = 0.91
Table S259. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
GPRIN2 MUTATED | 5 | 5 | 1 |
GPRIN2 WILD-TYPE | 500 | 274 | 189 |
P value = 0.42 (Fisher's exact test), Q value = 0.88
Table S260. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
GPRIN2 MUTATED | 1 | 2 | 0 | 4 | 4 | 0 |
GPRIN2 WILD-TYPE | 262 | 149 | 79 | 257 | 164 | 52 |
P value = 0.371 (Fisher's exact test), Q value = 0.87
Table S261. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
GPRIN2 MUTATED | 4 | 1 | 4 | 1 |
GPRIN2 WILD-TYPE | 268 | 176 | 229 | 275 |
P value = 0.0628 (Fisher's exact test), Q value = 0.42
Table S262. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
GPRIN2 MUTATED | 2 | 0 | 1 | 3 | 0 | 4 |
GPRIN2 WILD-TYPE | 273 | 136 | 205 | 131 | 87 | 116 |
P value = 0.401 (Fisher's exact test), Q value = 0.88
Table S263. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
GPRIN2 MUTATED | 1 | 3 | 1 | 0 | 1 |
GPRIN2 WILD-TYPE | 177 | 117 | 65 | 92 | 111 |
P value = 0.666 (Fisher's exact test), Q value = 0.99
Table S264. Gene #22: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
GPRIN2 MUTATED | 4 | 2 | 0 |
GPRIN2 WILD-TYPE | 275 | 179 | 108 |
P value = 0.666 (Fisher's exact test), Q value = 0.99
Table S265. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
SPEN MUTATED | 0 | 1 | 4 | 2 | 8 | 3 | 1 | 1 |
SPEN WILD-TYPE | 21 | 37 | 110 | 95 | 100 | 70 | 18 | 38 |
P value = 0.788 (Fisher's exact test), Q value = 1
Table S266. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
SPEN MUTATED | 4 | 8 | 5 | 2 | 1 |
SPEN WILD-TYPE | 92 | 144 | 111 | 87 | 55 |
P value = 0.483 (Fisher's exact test), Q value = 0.91
Table S267. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
SPEN MUTATED | 6 | 15 | 2 | 5 | 2 |
SPEN WILD-TYPE | 241 | 348 | 84 | 226 | 34 |
P value = 0.464 (Fisher's exact test), Q value = 0.91
Table S268. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
SPEN MUTATED | 5 | 3 | 9 | 5 | 1 | 1 |
SPEN WILD-TYPE | 115 | 81 | 180 | 96 | 115 | 53 |
P value = 0.791 (Fisher's exact test), Q value = 1
Table S269. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
SPEN MUTATED | 6 | 5 | 3 |
SPEN WILD-TYPE | 142 | 119 | 119 |
P value = 0.0271 (Fisher's exact test), Q value = 0.26
Table S270. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
SPEN MUTATED | 1 | 5 | 2 | 0 | 3 | 3 |
SPEN WILD-TYPE | 58 | 43 | 88 | 53 | 110 | 28 |
Figure S90. Get High-res Image Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D23V6.png)
P value = 0.207 (Fisher's exact test), Q value = 0.72
Table S271. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
SPEN MUTATED | 21 | 5 | 6 |
SPEN WILD-TYPE | 484 | 274 | 184 |
P value = 0.119 (Fisher's exact test), Q value = 0.56
Table S272. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
SPEN MUTATED | 6 | 7 | 1 | 14 | 2 | 2 |
SPEN WILD-TYPE | 257 | 144 | 78 | 247 | 166 | 50 |
P value = 0.213 (Fisher's exact test), Q value = 0.73
Table S273. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
SPEN MUTATED | 5 | 5 | 8 | 14 |
SPEN WILD-TYPE | 267 | 172 | 225 | 262 |
P value = 0.00913 (Fisher's exact test), Q value = 0.12
Table S274. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
SPEN MUTATED | 15 | 0 | 4 | 8 | 3 | 2 |
SPEN WILD-TYPE | 260 | 136 | 202 | 126 | 84 | 118 |
Figure S91. Get High-res Image Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D23V10.png)
P value = 0.0943 (Fisher's exact test), Q value = 0.5
Table S275. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
SPEN MUTATED | 5 | 1 | 4 | 0 | 3 |
SPEN WILD-TYPE | 173 | 119 | 62 | 92 | 109 |
P value = 0.658 (Fisher's exact test), Q value = 0.99
Table S276. Gene #23: 'SPEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
SPEN MUTATED | 7 | 5 | 1 |
SPEN WILD-TYPE | 272 | 176 | 107 |
P value = 0.57 (Fisher's exact test), Q value = 0.97
Table S277. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
NF1 MUTATED | 1 | 0 | 2 | 3 | 4 | 2 | 0 | 3 |
NF1 WILD-TYPE | 20 | 38 | 112 | 94 | 104 | 71 | 19 | 36 |
P value = 0.805 (Fisher's exact test), Q value = 1
Table S278. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
NF1 MUTATED | 2 | 4 | 3 | 3 | 3 |
NF1 WILD-TYPE | 94 | 148 | 113 | 86 | 53 |
P value = 0.567 (Fisher's exact test), Q value = 0.97
Table S279. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
NF1 MUTATED | 4 | 13 | 3 | 7 | 0 |
NF1 WILD-TYPE | 243 | 350 | 83 | 224 | 36 |
P value = 0.224 (Fisher's exact test), Q value = 0.74
Table S280. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
NF1 MUTATED | 3 | 4 | 3 | 6 | 3 | 0 |
NF1 WILD-TYPE | 117 | 80 | 186 | 95 | 113 | 54 |
P value = 0.549 (Fisher's exact test), Q value = 0.96
Table S281. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
NF1 MUTATED | 4 | 4 | 6 |
NF1 WILD-TYPE | 144 | 120 | 116 |
P value = 0.233 (Fisher's exact test), Q value = 0.75
Table S282. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
NF1 MUTATED | 0 | 3 | 2 | 3 | 6 | 0 |
NF1 WILD-TYPE | 59 | 45 | 88 | 50 | 107 | 31 |
P value = 0.385 (Fisher's exact test), Q value = 0.88
Table S283. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
NF1 MUTATED | 12 | 11 | 4 |
NF1 WILD-TYPE | 493 | 268 | 186 |
P value = 0.417 (Fisher's exact test), Q value = 0.88
Table S284. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
NF1 MUTATED | 4 | 7 | 3 | 6 | 6 | 1 |
NF1 WILD-TYPE | 259 | 144 | 76 | 255 | 162 | 51 |
P value = 0.329 (Fisher's exact test), Q value = 0.84
Table S285. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
NF1 MUTATED | 6 | 8 | 4 | 9 |
NF1 WILD-TYPE | 266 | 169 | 229 | 267 |
P value = 0.677 (Fisher's exact test), Q value = 0.99
Table S286. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
NF1 MUTATED | 9 | 5 | 4 | 2 | 4 | 3 |
NF1 WILD-TYPE | 266 | 131 | 202 | 132 | 83 | 117 |
P value = 0.943 (Fisher's exact test), Q value = 1
Table S287. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
NF1 MUTATED | 4 | 4 | 1 | 3 | 3 |
NF1 WILD-TYPE | 174 | 116 | 65 | 89 | 109 |
P value = 0.542 (Fisher's exact test), Q value = 0.95
Table S288. Gene #24: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
NF1 MUTATED | 9 | 5 | 1 |
NF1 WILD-TYPE | 270 | 176 | 107 |
P value = 0.785 (Fisher's exact test), Q value = 1
Table S289. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TCP11 MUTATED | 0 | 1 | 2 | 1 | 1 | 0 | 0 | 1 |
TCP11 WILD-TYPE | 21 | 37 | 112 | 96 | 107 | 73 | 19 | 38 |
P value = 0.512 (Fisher's exact test), Q value = 0.94
Table S290. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TCP11 MUTATED | 2 | 3 | 0 | 1 | 0 |
TCP11 WILD-TYPE | 94 | 149 | 116 | 88 | 56 |
P value = 0.456 (Fisher's exact test), Q value = 0.91
Table S291. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TCP11 MUTATED | 1 | 3 | 0 | 1 | 1 |
TCP11 WILD-TYPE | 246 | 360 | 86 | 230 | 35 |
P value = 1 (Fisher's exact test), Q value = 1
Table S292. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
TCP11 MUTATED | 2 | 2 | 1 |
TCP11 WILD-TYPE | 146 | 122 | 121 |
P value = 0.61 (Fisher's exact test), Q value = 0.98
Table S293. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
TCP11 MUTATED | 0 | 0 | 1 | 2 | 2 | 0 |
TCP11 WILD-TYPE | 59 | 48 | 89 | 51 | 111 | 31 |
P value = 0.745 (Fisher's exact test), Q value = 1
Table S294. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TCP11 MUTATED | 3 | 1 | 2 |
TCP11 WILD-TYPE | 502 | 278 | 188 |
P value = 0.374 (Fisher's exact test), Q value = 0.87
Table S295. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TCP11 MUTATED | 1 | 1 | 2 | 1 | 1 | 0 |
TCP11 WILD-TYPE | 262 | 150 | 77 | 260 | 167 | 52 |
P value = 0.946 (Fisher's exact test), Q value = 1
Table S296. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TCP11 MUTATED | 1 | 1 | 2 | 2 |
TCP11 WILD-TYPE | 271 | 176 | 231 | 274 |
P value = 0.761 (Fisher's exact test), Q value = 1
Table S297. Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TCP11 MUTATED | 2 | 0 | 2 | 0 | 1 | 1 |
TCP11 WILD-TYPE | 273 | 136 | 204 | 134 | 86 | 119 |
P value = 0.846 (Fisher's exact test), Q value = 1
Table S298. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
SF3B1 MUTATED | 0 | 0 | 1 | 1 | 3 | 2 | 0 | 1 |
SF3B1 WILD-TYPE | 21 | 38 | 113 | 96 | 105 | 71 | 19 | 38 |
P value = 0.845 (Fisher's exact test), Q value = 1
Table S299. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
SF3B1 MUTATED | 1 | 4 | 2 | 1 | 0 |
SF3B1 WILD-TYPE | 95 | 148 | 114 | 88 | 56 |
P value = 0.539 (Fisher's exact test), Q value = 0.95
Table S300. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
SF3B1 MUTATED | 7 | 6 | 1 | 2 | 0 |
SF3B1 WILD-TYPE | 240 | 357 | 85 | 229 | 36 |
P value = 0.0765 (Fisher's exact test), Q value = 0.45
Table S301. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
SF3B1 MUTATED | 3 | 2 | 8 | 0 | 0 | 1 |
SF3B1 WILD-TYPE | 117 | 82 | 181 | 101 | 116 | 53 |
P value = 0.0776 (Fisher's exact test), Q value = 0.45
Table S302. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
SF3B1 MUTATED | 1 | 4 | 0 |
SF3B1 WILD-TYPE | 147 | 120 | 122 |
P value = 0.0788 (Fisher's exact test), Q value = 0.46
Table S303. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
SF3B1 MUTATED | 0 | 2 | 1 | 2 | 0 | 0 |
SF3B1 WILD-TYPE | 59 | 46 | 89 | 51 | 113 | 31 |
P value = 0.288 (Fisher's exact test), Q value = 0.83
Table S304. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
SF3B1 MUTATED | 11 | 2 | 3 |
SF3B1 WILD-TYPE | 494 | 277 | 187 |
P value = 0.356 (Fisher's exact test), Q value = 0.85
Table S305. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
SF3B1 MUTATED | 5 | 4 | 3 | 3 | 1 | 0 |
SF3B1 WILD-TYPE | 258 | 147 | 76 | 258 | 167 | 52 |
P value = 0.262 (Fisher's exact test), Q value = 0.79
Table S306. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
SF3B1 MUTATED | 2 | 3 | 7 | 4 |
SF3B1 WILD-TYPE | 270 | 174 | 226 | 272 |
P value = 0.387 (Fisher's exact test), Q value = 0.88
Table S307. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
SF3B1 MUTATED | 2 | 2 | 5 | 3 | 3 | 1 |
SF3B1 WILD-TYPE | 273 | 134 | 201 | 131 | 84 | 119 |
P value = 0.353 (Fisher's exact test), Q value = 0.85
Table S308. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
SF3B1 MUTATED | 1 | 0 | 1 | 2 | 2 |
SF3B1 WILD-TYPE | 177 | 120 | 65 | 90 | 110 |
P value = 0.247 (Fisher's exact test), Q value = 0.77
Table S309. Gene #26: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
SF3B1 MUTATED | 1 | 3 | 2 |
SF3B1 WILD-TYPE | 278 | 178 | 106 |
P value = 0.575 (Fisher's exact test), Q value = 0.97
Table S310. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ERBB2 MUTATED | 1 | 1 | 1 | 1 | 3 | 3 | 0 | 1 |
ERBB2 WILD-TYPE | 20 | 37 | 113 | 96 | 105 | 70 | 19 | 38 |
P value = 0.465 (Fisher's exact test), Q value = 0.91
Table S311. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ERBB2 MUTATED | 1 | 6 | 3 | 1 | 0 |
ERBB2 WILD-TYPE | 95 | 146 | 113 | 88 | 56 |
P value = 0.0271 (Fisher's exact test), Q value = 0.26
Table S312. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ERBB2 MUTATED | 3 | 10 | 5 | 1 | 0 |
ERBB2 WILD-TYPE | 244 | 353 | 81 | 230 | 36 |
Figure S92. Get High-res Image Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D27V3.png)
P value = 0.00238 (Fisher's exact test), Q value = 0.038
Table S313. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ERBB2 MUTATED | 0 | 4 | 1 | 3 | 1 | 4 |
ERBB2 WILD-TYPE | 120 | 80 | 188 | 98 | 115 | 50 |
Figure S93. Get High-res Image Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D27V4.png)
P value = 0.309 (Fisher's exact test), Q value = 0.83
Table S314. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ERBB2 MUTATED | 1 | 4 | 2 |
ERBB2 WILD-TYPE | 147 | 120 | 120 |
P value = 0.955 (Fisher's exact test), Q value = 1
Table S315. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ERBB2 MUTATED | 1 | 1 | 1 | 1 | 2 | 1 |
ERBB2 WILD-TYPE | 58 | 47 | 89 | 52 | 111 | 30 |
P value = 0.217 (Fisher's exact test), Q value = 0.73
Table S316. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ERBB2 MUTATED | 9 | 4 | 7 |
ERBB2 WILD-TYPE | 496 | 275 | 183 |
P value = 0.134 (Fisher's exact test), Q value = 0.58
Table S317. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ERBB2 MUTATED | 3 | 3 | 2 | 8 | 1 | 3 |
ERBB2 WILD-TYPE | 260 | 148 | 77 | 253 | 167 | 49 |
P value = 0.217 (Fisher's exact test), Q value = 0.73
Table S318. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ERBB2 MUTATED | 2 | 5 | 7 | 6 |
ERBB2 WILD-TYPE | 270 | 172 | 226 | 270 |
P value = 0.106 (Fisher's exact test), Q value = 0.53
Table S319. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ERBB2 MUTATED | 4 | 2 | 7 | 6 | 1 | 0 |
ERBB2 WILD-TYPE | 271 | 134 | 199 | 128 | 86 | 120 |
P value = 0.319 (Fisher's exact test), Q value = 0.84
Table S320. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ERBB2 MUTATED | 1 | 1 | 1 | 3 | 3 |
ERBB2 WILD-TYPE | 177 | 119 | 65 | 89 | 109 |
P value = 0.603 (Fisher's exact test), Q value = 0.98
Table S321. Gene #27: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ERBB2 MUTATED | 3 | 4 | 2 |
ERBB2 WILD-TYPE | 276 | 177 | 106 |
P value = 0.408 (Fisher's exact test), Q value = 0.88
Table S322. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RAB42 MUTATED | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 |
RAB42 WILD-TYPE | 21 | 38 | 114 | 94 | 107 | 73 | 19 | 39 |
P value = 0.0679 (Fisher's exact test), Q value = 0.43
Table S323. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RAB42 MUTATED | 0 | 1 | 0 | 3 | 0 |
RAB42 WILD-TYPE | 96 | 151 | 116 | 86 | 56 |
P value = 0.0413 (Fisher's exact test), Q value = 0.34
Table S324. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RAB42 MUTATED | 0 | 0 | 1 | 3 | 0 |
RAB42 WILD-TYPE | 247 | 363 | 85 | 228 | 36 |
Figure S94. Get High-res Image Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D28V3.png)
P value = 0.515 (Fisher's exact test), Q value = 0.94
Table S325. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
RAB42 MUTATED | 1 | 2 | 0 |
RAB42 WILD-TYPE | 147 | 122 | 122 |
P value = 0.388 (Fisher's exact test), Q value = 0.88
Table S326. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
RAB42 MUTATED | 0 | 0 | 2 | 1 | 0 | 0 |
RAB42 WILD-TYPE | 59 | 48 | 88 | 52 | 113 | 31 |
P value = 0.117 (Fisher's exact test), Q value = 0.55
Table S327. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RAB42 MUTATED | 1 | 3 | 0 |
RAB42 WILD-TYPE | 504 | 276 | 190 |
P value = 0.156 (Fisher's exact test), Q value = 0.63
Table S328. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RAB42 MUTATED | 0 | 0 | 0 | 1 | 3 | 0 |
RAB42 WILD-TYPE | 263 | 151 | 79 | 260 | 165 | 52 |
P value = 0.232 (Fisher's exact test), Q value = 0.75
Table S329. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RAB42 MUTATED | 3 | 0 | 0 | 1 |
RAB42 WILD-TYPE | 269 | 177 | 233 | 275 |
P value = 0.00999 (Fisher's exact test), Q value = 0.13
Table S330. Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RAB42 MUTATED | 0 | 0 | 0 | 1 | 0 | 3 |
RAB42 WILD-TYPE | 275 | 136 | 206 | 133 | 87 | 117 |
Figure S95. Get High-res Image Gene #28: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D28V10.png)
P value = 0.522 (Fisher's exact test), Q value = 0.95
Table S331. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CDC42EP1 MUTATED | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 |
CDC42EP1 WILD-TYPE | 21 | 38 | 113 | 95 | 108 | 73 | 19 | 38 |
P value = 0.462 (Fisher's exact test), Q value = 0.91
Table S332. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CDC42EP1 MUTATED | 1 | 1 | 0 | 2 | 0 |
CDC42EP1 WILD-TYPE | 95 | 151 | 116 | 87 | 56 |
P value = 0.381 (Fisher's exact test), Q value = 0.88
Table S333. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CDC42EP1 MUTATED | 0 | 2 | 1 | 2 | 0 |
CDC42EP1 WILD-TYPE | 247 | 361 | 85 | 229 | 36 |
P value = 0.327 (Fisher's exact test), Q value = 0.84
Table S334. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CDC42EP1 MUTATED | 0 | 0 | 1 | 2 | 0 | 0 |
CDC42EP1 WILD-TYPE | 120 | 84 | 188 | 99 | 116 | 54 |
P value = 0.558 (Fisher's exact test), Q value = 0.96
Table S335. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CDC42EP1 MUTATED | 2 | 2 | 0 |
CDC42EP1 WILD-TYPE | 146 | 122 | 122 |
P value = 0.473 (Fisher's exact test), Q value = 0.91
Table S336. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CDC42EP1 MUTATED | 1 | 0 | 2 | 1 | 0 | 0 |
CDC42EP1 WILD-TYPE | 58 | 48 | 88 | 52 | 113 | 31 |
P value = 0.845 (Fisher's exact test), Q value = 1
Table S337. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CDC42EP1 MUTATED | 2 | 2 | 1 |
CDC42EP1 WILD-TYPE | 503 | 277 | 189 |
P value = 0.561 (Fisher's exact test), Q value = 0.97
Table S338. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CDC42EP1 MUTATED | 1 | 0 | 1 | 1 | 2 | 0 |
CDC42EP1 WILD-TYPE | 262 | 151 | 78 | 260 | 166 | 52 |
P value = 0.728 (Fisher's exact test), Q value = 1
Table S339. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CDC42EP1 MUTATED | 2 | 0 | 2 | 1 |
CDC42EP1 WILD-TYPE | 270 | 177 | 231 | 275 |
P value = 0.306 (Fisher's exact test), Q value = 0.83
Table S340. Gene #29: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CDC42EP1 MUTATED | 0 | 2 | 1 | 1 | 0 | 1 |
CDC42EP1 WILD-TYPE | 275 | 134 | 205 | 133 | 87 | 119 |
P value = 0.74 (Fisher's exact test), Q value = 1
Table S341. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
KDM6A MUTATED | 0 | 1 | 1 | 2 | 3 | 0 | 0 | 1 |
KDM6A WILD-TYPE | 21 | 37 | 113 | 95 | 105 | 73 | 19 | 38 |
P value = 0.345 (Fisher's exact test), Q value = 0.85
Table S342. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
KDM6A MUTATED | 2 | 4 | 0 | 2 | 0 |
KDM6A WILD-TYPE | 94 | 148 | 116 | 87 | 56 |
P value = 0.535 (Fisher's exact test), Q value = 0.95
Table S343. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
KDM6A MUTATED | 5 | 5 | 2 | 2 | 1 |
KDM6A WILD-TYPE | 242 | 358 | 84 | 229 | 35 |
P value = 0.176 (Fisher's exact test), Q value = 0.67
Table S344. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
KDM6A MUTATED | 3 | 1 | 1 | 0 | 3 | 2 |
KDM6A WILD-TYPE | 117 | 83 | 188 | 101 | 113 | 52 |
P value = 0.508 (Fisher's exact test), Q value = 0.93
Table S345. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
KDM6A MUTATED | 4 | 1 | 2 |
KDM6A WILD-TYPE | 144 | 123 | 120 |
P value = 0.965 (Fisher's exact test), Q value = 1
Table S346. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
KDM6A MUTATED | 1 | 1 | 2 | 0 | 3 | 0 |
KDM6A WILD-TYPE | 58 | 47 | 88 | 53 | 110 | 31 |
P value = 0.304 (Fisher's exact test), Q value = 0.83
Table S347. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
KDM6A MUTATED | 5 | 6 | 4 |
KDM6A WILD-TYPE | 500 | 273 | 186 |
P value = 0.408 (Fisher's exact test), Q value = 0.88
Table S348. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
KDM6A MUTATED | 2 | 3 | 0 | 5 | 5 | 0 |
KDM6A WILD-TYPE | 261 | 148 | 79 | 256 | 163 | 52 |
P value = 0.675 (Fisher's exact test), Q value = 0.99
Table S349. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
KDM6A MUTATED | 5 | 4 | 2 | 4 |
KDM6A WILD-TYPE | 267 | 173 | 231 | 272 |
P value = 0.647 (Fisher's exact test), Q value = 0.99
Table S350. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
KDM6A MUTATED | 4 | 2 | 3 | 2 | 0 | 4 |
KDM6A WILD-TYPE | 271 | 134 | 203 | 132 | 87 | 116 |
P value = 0.759 (Fisher's exact test), Q value = 1
Table S351. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
KDM6A MUTATED | 4 | 3 | 0 | 1 | 1 |
KDM6A WILD-TYPE | 174 | 117 | 66 | 91 | 111 |
P value = 0.449 (Fisher's exact test), Q value = 0.9
Table S352. Gene #30: 'KDM6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
KDM6A MUTATED | 6 | 1 | 2 |
KDM6A WILD-TYPE | 273 | 180 | 106 |
P value = 0.627 (Fisher's exact test), Q value = 0.99
Table S353. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
AQP12A MUTATED | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 |
AQP12A WILD-TYPE | 21 | 37 | 113 | 97 | 107 | 73 | 19 | 39 |
P value = 0.726 (Fisher's exact test), Q value = 1
Table S354. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
AQP12A MUTATED | 1 | 2 | 0 | 0 | 0 |
AQP12A WILD-TYPE | 95 | 150 | 116 | 89 | 56 |
P value = 0.346 (Fisher's exact test), Q value = 0.85
Table S355. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
AQP12A MUTATED | 4 | 1 | 0 | 1 | 0 |
AQP12A WILD-TYPE | 243 | 362 | 86 | 230 | 36 |
P value = 0.543 (Fisher's exact test), Q value = 0.95
Table S356. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
AQP12A MUTATED | 1 | 2 | 1 | 0 | 1 | 0 |
AQP12A WILD-TYPE | 119 | 82 | 188 | 101 | 115 | 54 |
P value = 0.296 (Fisher's exact test), Q value = 0.83
Table S357. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
AQP12A MUTATED | 0 | 2 | 1 |
AQP12A WILD-TYPE | 148 | 122 | 121 |
P value = 0.435 (Fisher's exact test), Q value = 0.89
Table S358. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
AQP12A MUTATED | 0 | 0 | 0 | 0 | 3 | 0 |
AQP12A WILD-TYPE | 59 | 48 | 90 | 53 | 110 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
Table S359. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
AQP12A MUTATED | 3 | 2 | 1 |
AQP12A WILD-TYPE | 502 | 277 | 189 |
P value = 1 (Fisher's exact test), Q value = 1
Table S360. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
AQP12A MUTATED | 2 | 1 | 0 | 2 | 1 | 0 |
AQP12A WILD-TYPE | 261 | 150 | 79 | 259 | 167 | 52 |
P value = 0.945 (Fisher's exact test), Q value = 1
Table S361. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
AQP12A MUTATED | 1 | 1 | 2 | 2 |
AQP12A WILD-TYPE | 271 | 176 | 231 | 274 |
P value = 0.497 (Fisher's exact test), Q value = 0.93
Table S362. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
AQP12A MUTATED | 1 | 0 | 1 | 2 | 1 | 1 |
AQP12A WILD-TYPE | 274 | 136 | 205 | 132 | 86 | 119 |
P value = 0.385 (Fisher's exact test), Q value = 0.88
Table S363. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
AQP12A MUTATED | 2 | 0 | 1 | 0 | 0 |
AQP12A WILD-TYPE | 176 | 120 | 65 | 92 | 112 |
P value = 1 (Fisher's exact test), Q value = 1
Table S364. Gene #31: 'AQP12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
AQP12A MUTATED | 2 | 1 | 0 |
AQP12A WILD-TYPE | 277 | 180 | 108 |
P value = 0.539 (Fisher's exact test), Q value = 0.95
Table S365. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
KRAS MUTATED | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 1 |
KRAS WILD-TYPE | 21 | 38 | 114 | 96 | 106 | 73 | 19 | 38 |
P value = 0.632 (Fisher's exact test), Q value = 0.99
Table S366. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
KRAS MUTATED | 0 | 2 | 1 | 0 | 1 |
KRAS WILD-TYPE | 96 | 150 | 115 | 89 | 55 |
P value = 0.325 (Fisher's exact test), Q value = 0.84
Table S367. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
KRAS MUTATED | 0 | 5 | 0 | 1 | 0 |
KRAS WILD-TYPE | 247 | 358 | 86 | 230 | 36 |
P value = 0.506 (Fisher's exact test), Q value = 0.93
Table S368. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
KRAS MUTATED | 0 | 0 | 3 | 1 | 0 | 0 |
KRAS WILD-TYPE | 120 | 84 | 186 | 100 | 116 | 54 |
P value = 0.296 (Fisher's exact test), Q value = 0.83
Table S369. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
KRAS MUTATED | 0 | 2 | 1 |
KRAS WILD-TYPE | 148 | 122 | 121 |
P value = 0.512 (Fisher's exact test), Q value = 0.94
Table S370. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
KRAS MUTATED | 1 | 0 | 1 | 1 | 0 | 0 |
KRAS WILD-TYPE | 58 | 48 | 89 | 52 | 113 | 31 |
P value = 0.746 (Fisher's exact test), Q value = 1
Table S371. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
KRAS MUTATED | 3 | 1 | 2 |
KRAS WILD-TYPE | 502 | 278 | 188 |
P value = 0.0842 (Fisher's exact test), Q value = 0.47
Table S372. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
KRAS MUTATED | 2 | 0 | 2 | 1 | 0 | 1 |
KRAS WILD-TYPE | 261 | 151 | 77 | 260 | 168 | 51 |
P value = 0.852 (Fisher's exact test), Q value = 1
Table S373. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
KRAS MUTATED | 1 | 1 | 1 | 3 |
KRAS WILD-TYPE | 271 | 176 | 232 | 273 |
P value = 0.958 (Fisher's exact test), Q value = 1
Table S374. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
KRAS MUTATED | 3 | 1 | 1 | 1 | 0 | 0 |
KRAS WILD-TYPE | 272 | 135 | 205 | 133 | 87 | 120 |
P value = 0.922 (Fisher's exact test), Q value = 1
Table S375. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
KRAS MUTATED | 1 | 1 | 0 | 1 | 0 |
KRAS WILD-TYPE | 177 | 119 | 66 | 91 | 112 |
P value = 0.126 (Fisher's exact test), Q value = 0.56
Table S376. Gene #32: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
KRAS MUTATED | 1 | 0 | 2 |
KRAS WILD-TYPE | 278 | 181 | 106 |
P value = 0.614 (Fisher's exact test), Q value = 0.98
Table S377. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
NBPF9 MUTATED | 1 | 0 | 1 | 1 | 2 | 0 | 0 | 0 |
NBPF9 WILD-TYPE | 20 | 38 | 113 | 96 | 106 | 73 | 19 | 39 |
P value = 0.626 (Fisher's exact test), Q value = 0.99
Table S378. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
NBPF9 MUTATED | 0 | 1 | 2 | 1 | 1 |
NBPF9 WILD-TYPE | 96 | 151 | 114 | 88 | 55 |
P value = 0.804 (Fisher's exact test), Q value = 1
Table S379. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
NBPF9 MUTATED | 1 | 2 | 1 | 1 | 0 |
NBPF9 WILD-TYPE | 246 | 361 | 85 | 230 | 36 |
P value = 1 (Fisher's exact test), Q value = 1
Table S380. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
NBPF9 MUTATED | 2 | 2 | 1 |
NBPF9 WILD-TYPE | 146 | 122 | 121 |
P value = 0.641 (Fisher's exact test), Q value = 0.99
Table S381. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
NBPF9 MUTATED | 1 | 0 | 1 | 2 | 1 | 0 |
NBPF9 WILD-TYPE | 58 | 48 | 89 | 51 | 112 | 31 |
P value = 0.603 (Fisher's exact test), Q value = 0.98
Table S382. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
NBPF9 MUTATED | 4 | 1 | 0 |
NBPF9 WILD-TYPE | 501 | 278 | 190 |
P value = 0.155 (Fisher's exact test), Q value = 0.63
Table S383. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
NBPF9 MUTATED | 1 | 3 | 0 | 0 | 1 | 0 |
NBPF9 WILD-TYPE | 262 | 148 | 79 | 261 | 167 | 52 |
P value = 0.143 (Fisher's exact test), Q value = 0.61
Table S384. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
NBPF9 MUTATED | 2 | 0 | 3 | 0 |
NBPF9 WILD-TYPE | 270 | 177 | 230 | 276 |
P value = 0.301 (Fisher's exact test), Q value = 0.83
Table S385. Gene #33: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
NBPF9 MUTATED | 2 | 2 | 0 | 0 | 1 | 0 |
NBPF9 WILD-TYPE | 273 | 134 | 206 | 134 | 86 | 120 |
P value = 0.736 (Fisher's exact test), Q value = 1
Table S386. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MYB MUTATED | 0 | 0 | 2 | 2 | 4 | 0 | 0 | 1 |
MYB WILD-TYPE | 21 | 38 | 112 | 95 | 104 | 73 | 19 | 38 |
P value = 0.0285 (Fisher's exact test), Q value = 0.26
Table S387. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MYB MUTATED | 0 | 2 | 1 | 2 | 4 |
MYB WILD-TYPE | 96 | 150 | 115 | 87 | 52 |
Figure S96. Get High-res Image Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D34V2.png)
P value = 0.226 (Fisher's exact test), Q value = 0.75
Table S388. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MYB MUTATED | 1 | 6 | 3 | 2 | 0 |
MYB WILD-TYPE | 246 | 357 | 83 | 229 | 36 |
P value = 0.323 (Fisher's exact test), Q value = 0.84
Table S389. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MYB MUTATED | 0 | 1 | 1 | 0 | 2 | 1 |
MYB WILD-TYPE | 120 | 83 | 188 | 101 | 114 | 53 |
P value = 0.869 (Fisher's exact test), Q value = 1
Table S390. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MYB MUTATED | 2 | 1 | 2 |
MYB WILD-TYPE | 146 | 123 | 120 |
P value = 0.696 (Fisher's exact test), Q value = 1
Table S391. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MYB MUTATED | 2 | 0 | 1 | 1 | 1 | 0 |
MYB WILD-TYPE | 57 | 48 | 89 | 52 | 112 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
Table S392. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MYB MUTATED | 7 | 3 | 2 |
MYB WILD-TYPE | 498 | 276 | 188 |
P value = 0.901 (Fisher's exact test), Q value = 1
Table S393. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MYB MUTATED | 4 | 1 | 0 | 4 | 3 | 0 |
MYB WILD-TYPE | 259 | 150 | 79 | 257 | 165 | 52 |
P value = 0.0972 (Fisher's exact test), Q value = 0.51
Table S394. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MYB MUTATED | 2 | 1 | 7 | 2 |
MYB WILD-TYPE | 270 | 176 | 226 | 274 |
P value = 0.125 (Fisher's exact test), Q value = 0.56
Table S395. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MYB MUTATED | 3 | 2 | 0 | 4 | 2 | 1 |
MYB WILD-TYPE | 272 | 134 | 206 | 130 | 85 | 119 |
P value = 0.283 (Fisher's exact test), Q value = 0.83
Table S396. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MYB MUTATED | 2 | 0 | 0 | 2 | 0 |
MYB WILD-TYPE | 176 | 120 | 66 | 90 | 112 |
P value = 0.00127 (Fisher's exact test), Q value = 0.022
Table S397. Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MYB MUTATED | 0 | 0 | 4 |
MYB WILD-TYPE | 279 | 181 | 104 |
Figure S97. Get High-res Image Gene #34: 'MYB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D34V12.png)
P value = 0.879 (Fisher's exact test), Q value = 1
Table S398. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ZNF362 MUTATED | 0 | 0 | 2 | 0 | 2 | 1 | 0 | 0 |
ZNF362 WILD-TYPE | 21 | 38 | 112 | 97 | 106 | 72 | 19 | 39 |
P value = 0.87 (Fisher's exact test), Q value = 1
Table S399. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ZNF362 MUTATED | 1 | 2 | 1 | 0 | 1 |
ZNF362 WILD-TYPE | 95 | 150 | 115 | 89 | 55 |
P value = 0.091 (Fisher's exact test), Q value = 0.49
Table S400. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ZNF362 MUTATED | 0 | 1 | 1 | 1 | 1 |
ZNF362 WILD-TYPE | 247 | 362 | 85 | 230 | 35 |
P value = 0.0761 (Fisher's exact test), Q value = 0.45
Table S401. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ZNF362 MUTATED | 0 | 1 | 3 |
ZNF362 WILD-TYPE | 148 | 123 | 119 |
P value = 0.662 (Fisher's exact test), Q value = 0.99
Table S402. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ZNF362 MUTATED | 1 | 1 | 0 | 0 | 2 | 0 |
ZNF362 WILD-TYPE | 58 | 47 | 90 | 53 | 111 | 31 |
P value = 0.41 (Fisher's exact test), Q value = 0.88
Table S403. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ZNF362 MUTATED | 4 | 0 | 1 |
ZNF362 WILD-TYPE | 501 | 279 | 189 |
P value = 0.91 (Fisher's exact test), Q value = 1
Table S404. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ZNF362 MUTATED | 2 | 1 | 0 | 2 | 0 | 0 |
ZNF362 WILD-TYPE | 261 | 150 | 79 | 259 | 168 | 52 |
P value = 0.0857 (Fisher's exact test), Q value = 0.47
Table S405. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ZNF362 MUTATED | 0 | 0 | 1 | 4 |
ZNF362 WILD-TYPE | 272 | 177 | 232 | 272 |
P value = 0.415 (Fisher's exact test), Q value = 0.88
Table S406. Gene #35: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ZNF362 MUTATED | 1 | 0 | 1 | 2 | 1 | 0 |
ZNF362 WILD-TYPE | 274 | 136 | 205 | 132 | 86 | 120 |
P value = 0.158 (Fisher's exact test), Q value = 0.63
Table S407. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TBL1XR1 MUTATED | 1 | 0 | 1 | 0 | 5 | 1 | 0 | 0 |
TBL1XR1 WILD-TYPE | 20 | 38 | 113 | 97 | 103 | 72 | 19 | 39 |
P value = 0.0812 (Fisher's exact test), Q value = 0.46
Table S408. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TBL1XR1 MUTATED | 0 | 3 | 2 | 0 | 3 |
TBL1XR1 WILD-TYPE | 96 | 149 | 114 | 89 | 53 |
P value = 0.0506 (Fisher's exact test), Q value = 0.39
Table S409. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TBL1XR1 MUTATED | 1 | 5 | 3 | 0 | 0 |
TBL1XR1 WILD-TYPE | 246 | 358 | 83 | 231 | 36 |
P value = 0.354 (Fisher's exact test), Q value = 0.85
Table S410. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
TBL1XR1 MUTATED | 2 | 1 | 4 |
TBL1XR1 WILD-TYPE | 146 | 123 | 118 |
P value = 0.155 (Fisher's exact test), Q value = 0.63
Table S411. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
TBL1XR1 MUTATED | 3 | 1 | 0 | 1 | 1 | 1 |
TBL1XR1 WILD-TYPE | 56 | 47 | 90 | 52 | 112 | 30 |
P value = 0.544 (Fisher's exact test), Q value = 0.95
Table S412. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TBL1XR1 MUTATED | 6 | 1 | 2 |
TBL1XR1 WILD-TYPE | 499 | 278 | 188 |
P value = 0.566 (Fisher's exact test), Q value = 0.97
Table S413. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TBL1XR1 MUTATED | 4 | 1 | 0 | 4 | 0 | 0 |
TBL1XR1 WILD-TYPE | 259 | 150 | 79 | 257 | 168 | 52 |
P value = 0.478 (Fisher's exact test), Q value = 0.91
Table S414. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TBL1XR1 MUTATED | 1 | 1 | 4 | 3 |
TBL1XR1 WILD-TYPE | 271 | 176 | 229 | 273 |
P value = 0.553 (Fisher's exact test), Q value = 0.96
Table S415. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TBL1XR1 MUTATED | 3 | 1 | 1 | 3 | 1 | 0 |
TBL1XR1 WILD-TYPE | 272 | 135 | 205 | 131 | 86 | 120 |
P value = 1 (Fisher's exact test), Q value = 1
Table S416. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
TBL1XR1 MUTATED | 2 | 1 | 0 | 1 | 1 |
TBL1XR1 WILD-TYPE | 176 | 119 | 66 | 91 | 111 |
P value = 0.0747 (Fisher's exact test), Q value = 0.45
Table S417. Gene #36: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
TBL1XR1 MUTATED | 1 | 1 | 3 |
TBL1XR1 WILD-TYPE | 278 | 180 | 105 |
P value = 0.882 (Fisher's exact test), Q value = 1
Table S418. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
SP3 MUTATED | 0 | 0 | 1 | 0 | 2 | 1 | 0 | 0 |
SP3 WILD-TYPE | 21 | 38 | 113 | 97 | 106 | 72 | 19 | 39 |
P value = 0.553 (Fisher's exact test), Q value = 0.96
Table S419. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
SP3 MUTATED | 0 | 3 | 1 | 0 | 0 |
SP3 WILD-TYPE | 96 | 149 | 115 | 89 | 56 |
P value = 0.558 (Fisher's exact test), Q value = 0.96
Table S420. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
SP3 MUTATED | 2 | 3 | 1 | 0 | 0 |
SP3 WILD-TYPE | 245 | 360 | 85 | 231 | 36 |
P value = 0.907 (Fisher's exact test), Q value = 1
Table S421. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
SP3 MUTATED | 1 | 0 | 2 | 1 | 0 | 0 |
SP3 WILD-TYPE | 119 | 84 | 187 | 100 | 116 | 54 |
P value = 0.879 (Fisher's exact test), Q value = 1
Table S422. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
SP3 MUTATED | 3 | 2 | 2 |
SP3 WILD-TYPE | 502 | 277 | 188 |
P value = 0.441 (Fisher's exact test), Q value = 0.9
Table S423. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
SP3 MUTATED | 1 | 2 | 0 | 4 | 0 | 0 |
SP3 WILD-TYPE | 262 | 149 | 79 | 257 | 168 | 52 |
P value = 0.398 (Fisher's exact test), Q value = 0.88
Table S424. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
SP3 MUTATED | 1 | 0 | 3 | 3 |
SP3 WILD-TYPE | 271 | 177 | 230 | 273 |
P value = 0.409 (Fisher's exact test), Q value = 0.88
Table S425. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
SP3 MUTATED | 3 | 2 | 0 | 1 | 1 | 0 |
SP3 WILD-TYPE | 272 | 134 | 206 | 133 | 86 | 120 |
P value = 0.319 (Fisher's exact test), Q value = 0.84
Table S426. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
SP3 MUTATED | 1 | 0 | 1 | 0 | 2 |
SP3 WILD-TYPE | 177 | 120 | 65 | 92 | 110 |
P value = 1 (Fisher's exact test), Q value = 1
Table S427. Gene #37: 'SP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
SP3 MUTATED | 2 | 1 | 1 |
SP3 WILD-TYPE | 277 | 180 | 107 |
P value = 0.917 (Fisher's exact test), Q value = 1
Table S428. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
FGFR2 MUTATED | 0 | 0 | 1 | 1 | 2 | 2 | 0 | 0 |
FGFR2 WILD-TYPE | 21 | 38 | 113 | 96 | 106 | 71 | 19 | 39 |
P value = 0.876 (Fisher's exact test), Q value = 1
Table S429. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
FGFR2 MUTATED | 1 | 1 | 2 | 1 | 1 |
FGFR2 WILD-TYPE | 95 | 151 | 114 | 88 | 55 |
P value = 0.329 (Fisher's exact test), Q value = 0.84
Table S430. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
FGFR2 MUTATED | 2 | 3 | 3 | 3 | 0 |
FGFR2 WILD-TYPE | 245 | 360 | 83 | 228 | 36 |
P value = 0.094 (Fisher's exact test), Q value = 0.5
Table S431. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
FGFR2 MUTATED | 3 | 1 | 0 | 1 | 0 | 1 |
FGFR2 WILD-TYPE | 117 | 83 | 189 | 100 | 116 | 53 |
P value = 0.868 (Fisher's exact test), Q value = 1
Table S432. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
FGFR2 MUTATED | 2 | 1 | 2 |
FGFR2 WILD-TYPE | 146 | 123 | 120 |
P value = 0.796 (Fisher's exact test), Q value = 1
Table S433. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
FGFR2 MUTATED | 0 | 0 | 1 | 1 | 3 | 0 |
FGFR2 WILD-TYPE | 59 | 48 | 89 | 52 | 110 | 31 |
P value = 0.79 (Fisher's exact test), Q value = 1
Table S434. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
FGFR2 MUTATED | 7 | 3 | 1 |
FGFR2 WILD-TYPE | 498 | 276 | 189 |
P value = 0.431 (Fisher's exact test), Q value = 0.89
Table S435. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
FGFR2 MUTATED | 2 | 4 | 0 | 3 | 1 | 1 |
FGFR2 WILD-TYPE | 261 | 147 | 79 | 258 | 167 | 51 |
P value = 0.226 (Fisher's exact test), Q value = 0.75
Table S436. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
FGFR2 MUTATED | 5 | 0 | 4 | 2 |
FGFR2 WILD-TYPE | 267 | 177 | 229 | 274 |
P value = 0.498 (Fisher's exact test), Q value = 0.93
Table S437. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
FGFR2 MUTATED | 6 | 1 | 3 | 0 | 0 | 1 |
FGFR2 WILD-TYPE | 269 | 135 | 203 | 134 | 87 | 119 |
P value = 0.608 (Fisher's exact test), Q value = 0.98
Table S438. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
FGFR2 MUTATED | 2 | 0 | 1 | 0 | 1 |
FGFR2 WILD-TYPE | 176 | 120 | 65 | 92 | 111 |
P value = 0.673 (Fisher's exact test), Q value = 0.99
Table S439. Gene #38: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
FGFR2 MUTATED | 2 | 2 | 0 |
FGFR2 WILD-TYPE | 277 | 179 | 108 |
P value = 0.496 (Fisher's exact test), Q value = 0.93
Table S440. Gene #39: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ZBTB7C MUTATED | 1 | 2 | 1 | 0 | 0 |
ZBTB7C WILD-TYPE | 246 | 361 | 85 | 231 | 36 |
P value = 0.307 (Fisher's exact test), Q value = 0.83
Table S441. Gene #39: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ZBTB7C MUTATED | 0 | 1 | 1 | 0 | 0 | 1 |
ZBTB7C WILD-TYPE | 120 | 83 | 188 | 101 | 116 | 53 |
P value = 0.497 (Fisher's exact test), Q value = 0.93
Table S442. Gene #39: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ZBTB7C MUTATED | 2 | 1 | 2 |
ZBTB7C WILD-TYPE | 503 | 278 | 188 |
P value = 0.678 (Fisher's exact test), Q value = 0.99
Table S443. Gene #39: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ZBTB7C MUTATED | 1 | 1 | 1 | 2 | 0 | 0 |
ZBTB7C WILD-TYPE | 262 | 150 | 78 | 259 | 168 | 52 |
P value = 0.685 (Fisher's exact test), Q value = 0.99
Table S444. Gene #39: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ZBTB7C MUTATED | 1 | 2 | 1 | 1 |
ZBTB7C WILD-TYPE | 271 | 175 | 232 | 275 |
P value = 0.921 (Fisher's exact test), Q value = 1
Table S445. Gene #39: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ZBTB7C MUTATED | 2 | 1 | 2 | 0 | 0 | 0 |
ZBTB7C WILD-TYPE | 273 | 135 | 204 | 134 | 87 | 120 |
P value = 1 (Fisher's exact test), Q value = 1
Table S446. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
NCDN MUTATED | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
NCDN WILD-TYPE | 21 | 38 | 113 | 96 | 107 | 73 | 19 | 39 |
P value = 0.791 (Fisher's exact test), Q value = 1
Table S447. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
NCDN MUTATED | 1 | 1 | 0 | 1 | 0 |
NCDN WILD-TYPE | 95 | 151 | 116 | 88 | 56 |
P value = 1 (Fisher's exact test), Q value = 1
Table S448. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
NCDN MUTATED | 1 | 2 | 0 | 1 | 0 |
NCDN WILD-TYPE | 246 | 361 | 86 | 230 | 36 |
P value = 0.403 (Fisher's exact test), Q value = 0.88
Table S449. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
NCDN MUTATED | 1 | 0 | 2 |
NCDN WILD-TYPE | 147 | 124 | 120 |
P value = 0.483 (Fisher's exact test), Q value = 0.91
Table S450. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
NCDN MUTATED | 1 | 1 | 1 | 0 | 0 | 0 |
NCDN WILD-TYPE | 58 | 47 | 89 | 53 | 113 | 31 |
P value = 0.82 (Fisher's exact test), Q value = 1
Table S451. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
NCDN MUTATED | 3 | 1 | 0 |
NCDN WILD-TYPE | 502 | 278 | 190 |
P value = 0.913 (Fisher's exact test), Q value = 1
Table S452. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
NCDN MUTATED | 1 | 0 | 0 | 2 | 1 | 0 |
NCDN WILD-TYPE | 262 | 151 | 79 | 259 | 167 | 52 |
P value = 0.841 (Fisher's exact test), Q value = 1
Table S453. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
NCDN MUTATED | 2 | 0 | 1 | 1 |
NCDN WILD-TYPE | 270 | 177 | 232 | 275 |
P value = 0.0519 (Fisher's exact test), Q value = 0.39
Table S454. Gene #40: 'NCDN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
NCDN MUTATED | 0 | 0 | 0 | 2 | 1 | 1 |
NCDN WILD-TYPE | 275 | 136 | 206 | 132 | 86 | 119 |
P value = 0.0206 (Fisher's exact test), Q value = 0.22
Table S455. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MUC6 MUTATED | 2 | 2 | 0 | 3 | 1 | 0 | 0 | 1 |
MUC6 WILD-TYPE | 19 | 36 | 114 | 94 | 107 | 73 | 19 | 38 |
Figure S98. Get High-res Image Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D41V1.png)
P value = 0.608 (Fisher's exact test), Q value = 0.98
Table S456. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MUC6 MUTATED | 0 | 3 | 3 | 2 | 1 |
MUC6 WILD-TYPE | 96 | 149 | 113 | 87 | 55 |
P value = 0.506 (Fisher's exact test), Q value = 0.93
Table S457. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MUC6 MUTATED | 4 | 4 | 0 | 6 | 0 |
MUC6 WILD-TYPE | 243 | 359 | 86 | 225 | 36 |
P value = 0.674 (Fisher's exact test), Q value = 0.99
Table S458. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MUC6 MUTATED | 2 | 1 | 1 | 2 | 3 | 1 |
MUC6 WILD-TYPE | 118 | 83 | 188 | 99 | 113 | 53 |
P value = 0.479 (Fisher's exact test), Q value = 0.91
Table S459. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MUC6 MUTATED | 4 | 4 | 1 |
MUC6 WILD-TYPE | 144 | 120 | 121 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S460. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MUC6 MUTATED | 1 | 1 | 2 | 2 | 2 | 1 |
MUC6 WILD-TYPE | 58 | 47 | 88 | 51 | 111 | 30 |
P value = 0.0613 (Fisher's exact test), Q value = 0.42
Table S461. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MUC6 MUTATED | 4 | 8 | 2 |
MUC6 WILD-TYPE | 501 | 271 | 188 |
P value = 0.204 (Fisher's exact test), Q value = 0.71
Table S462. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MUC6 MUTATED | 1 | 3 | 0 | 4 | 5 | 1 |
MUC6 WILD-TYPE | 262 | 148 | 79 | 257 | 163 | 51 |
P value = 0.625 (Fisher's exact test), Q value = 0.99
Table S463. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MUC6 MUTATED | 6 | 1 | 3 | 4 |
MUC6 WILD-TYPE | 266 | 176 | 230 | 272 |
P value = 0.112 (Fisher's exact test), Q value = 0.54
Table S464. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MUC6 MUTATED | 6 | 1 | 0 | 2 | 1 | 4 |
MUC6 WILD-TYPE | 269 | 135 | 206 | 132 | 86 | 116 |
P value = 0.283 (Fisher's exact test), Q value = 0.83
Table S465. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MUC6 MUTATED | 3 | 3 | 0 | 0 | 0 |
MUC6 WILD-TYPE | 175 | 117 | 66 | 92 | 112 |
P value = 0.0513 (Fisher's exact test), Q value = 0.39
Table S466. Gene #41: 'MUC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MUC6 MUTATED | 6 | 0 | 0 |
MUC6 WILD-TYPE | 273 | 181 | 108 |
P value = 0.637 (Fisher's exact test), Q value = 0.99
Table S467. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TGS1 MUTATED | 1 | 0 | 1 | 1 | 1 | 2 | 0 | 0 |
TGS1 WILD-TYPE | 20 | 38 | 113 | 96 | 107 | 71 | 19 | 39 |
P value = 0.666 (Fisher's exact test), Q value = 0.99
Table S468. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TGS1 MUTATED | 1 | 1 | 3 | 1 | 0 |
TGS1 WILD-TYPE | 95 | 151 | 113 | 88 | 56 |
P value = 0.421 (Fisher's exact test), Q value = 0.88
Table S469. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TGS1 MUTATED | 2 | 7 | 0 | 2 | 1 |
TGS1 WILD-TYPE | 245 | 356 | 86 | 229 | 35 |
P value = 0.236 (Fisher's exact test), Q value = 0.76
Table S470. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
TGS1 MUTATED | 1 | 3 | 4 | 3 | 0 | 0 |
TGS1 WILD-TYPE | 119 | 81 | 185 | 98 | 116 | 54 |
P value = 0.205 (Fisher's exact test), Q value = 0.71
Table S471. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
TGS1 MUTATED | 1 | 3 | 0 |
TGS1 WILD-TYPE | 147 | 121 | 122 |
P value = 0.558 (Fisher's exact test), Q value = 0.96
Table S472. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
TGS1 MUTATED | 0 | 1 | 1 | 0 | 1 | 1 |
TGS1 WILD-TYPE | 59 | 47 | 89 | 53 | 112 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
Table S473. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TGS1 MUTATED | 7 | 4 | 2 |
TGS1 WILD-TYPE | 498 | 275 | 188 |
P value = 0.245 (Fisher's exact test), Q value = 0.77
Table S474. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TGS1 MUTATED | 2 | 5 | 0 | 4 | 1 | 1 |
TGS1 WILD-TYPE | 261 | 146 | 79 | 257 | 167 | 51 |
P value = 0.27 (Fisher's exact test), Q value = 0.81
Table S475. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TGS1 MUTATED | 1 | 2 | 4 | 6 |
TGS1 WILD-TYPE | 271 | 175 | 229 | 270 |
P value = 0.46 (Fisher's exact test), Q value = 0.91
Table S476. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TGS1 MUTATED | 5 | 1 | 5 | 2 | 0 | 0 |
TGS1 WILD-TYPE | 270 | 135 | 201 | 132 | 87 | 120 |
P value = 0.248 (Fisher's exact test), Q value = 0.77
Table S477. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
TGS1 MUTATED | 3 | 0 | 2 | 0 | 2 |
TGS1 WILD-TYPE | 175 | 120 | 64 | 92 | 110 |
P value = 0.354 (Fisher's exact test), Q value = 0.85
Table S478. Gene #42: 'TGS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
TGS1 MUTATED | 2 | 4 | 1 |
TGS1 WILD-TYPE | 277 | 177 | 107 |
P value = 0.676 (Fisher's exact test), Q value = 0.99
Table S479. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TFE3 MUTATED | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 0 |
TFE3 WILD-TYPE | 20 | 37 | 113 | 95 | 107 | 72 | 19 | 39 |
P value = 0.903 (Fisher's exact test), Q value = 1
Table S480. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TFE3 MUTATED | 1 | 2 | 2 | 2 | 0 |
TFE3 WILD-TYPE | 95 | 150 | 114 | 87 | 56 |
P value = 0.741 (Fisher's exact test), Q value = 1
Table S481. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TFE3 MUTATED | 2 | 2 | 0 | 3 | 0 |
TFE3 WILD-TYPE | 245 | 361 | 86 | 228 | 36 |
P value = 0.322 (Fisher's exact test), Q value = 0.84
Table S482. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
TFE3 MUTATED | 1 | 0 | 0 | 1 | 1 | 1 |
TFE3 WILD-TYPE | 119 | 84 | 189 | 100 | 115 | 53 |
P value = 1 (Fisher's exact test), Q value = 1
Table S483. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
TFE3 MUTATED | 1 | 1 | 1 |
TFE3 WILD-TYPE | 147 | 123 | 121 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S484. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
TFE3 MUTATED | 0 | 0 | 1 | 0 | 2 | 0 |
TFE3 WILD-TYPE | 59 | 48 | 89 | 53 | 111 | 31 |
P value = 0.786 (Fisher's exact test), Q value = 1
Table S485. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TFE3 MUTATED | 3 | 3 | 1 |
TFE3 WILD-TYPE | 502 | 276 | 189 |
P value = 0.647 (Fisher's exact test), Q value = 0.99
Table S486. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TFE3 MUTATED | 2 | 1 | 0 | 1 | 2 | 1 |
TFE3 WILD-TYPE | 261 | 150 | 79 | 260 | 166 | 51 |
P value = 0.751 (Fisher's exact test), Q value = 1
Table S487. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TFE3 MUTATED | 2 | 2 | 2 | 1 |
TFE3 WILD-TYPE | 270 | 175 | 231 | 275 |
P value = 0.425 (Fisher's exact test), Q value = 0.88
Table S488. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TFE3 MUTATED | 1 | 3 | 1 | 1 | 0 | 1 |
TFE3 WILD-TYPE | 274 | 133 | 205 | 133 | 87 | 119 |
P value = 0.856 (Fisher's exact test), Q value = 1
Table S489. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
TFE3 MUTATED | 2 | 1 | 0 | 0 | 0 |
TFE3 WILD-TYPE | 176 | 119 | 66 | 92 | 112 |
P value = 0.301 (Fisher's exact test), Q value = 0.83
Table S490. Gene #43: 'TFE3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
TFE3 MUTATED | 3 | 0 | 0 |
TFE3 WILD-TYPE | 276 | 181 | 108 |
P value = 0.146 (Fisher's exact test), Q value = 0.61
Table S491. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
IRS4 MUTATED | 1 | 2 | 1 | 1 | 0 | 1 | 0 | 1 |
IRS4 WILD-TYPE | 20 | 36 | 113 | 96 | 108 | 72 | 19 | 38 |
P value = 0.782 (Fisher's exact test), Q value = 1
Table S492. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
IRS4 MUTATED | 1 | 4 | 1 | 1 | 0 |
IRS4 WILD-TYPE | 95 | 148 | 115 | 88 | 56 |
P value = 0.223 (Fisher's exact test), Q value = 0.74
Table S493. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
IRS4 MUTATED | 3 | 2 | 0 | 6 | 0 |
IRS4 WILD-TYPE | 244 | 361 | 86 | 225 | 36 |
P value = 0.683 (Fisher's exact test), Q value = 0.99
Table S494. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
IRS4 MUTATED | 2 | 1 | 1 | 1 | 3 | 1 |
IRS4 WILD-TYPE | 118 | 83 | 188 | 100 | 113 | 53 |
P value = 0.869 (Fisher's exact test), Q value = 1
Table S495. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
IRS4 MUTATED | 2 | 1 | 2 |
IRS4 WILD-TYPE | 146 | 123 | 120 |
P value = 0.847 (Fisher's exact test), Q value = 1
Table S496. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
IRS4 MUTATED | 1 | 0 | 1 | 0 | 3 | 0 |
IRS4 WILD-TYPE | 58 | 48 | 89 | 53 | 110 | 31 |
P value = 0.217 (Fisher's exact test), Q value = 0.73
Table S497. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
IRS4 MUTATED | 3 | 5 | 3 |
IRS4 WILD-TYPE | 502 | 274 | 187 |
P value = 0.47 (Fisher's exact test), Q value = 0.91
Table S498. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
IRS4 MUTATED | 2 | 0 | 1 | 4 | 3 | 1 |
IRS4 WILD-TYPE | 261 | 151 | 78 | 257 | 165 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
Table S499. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
IRS4 MUTATED | 3 | 2 | 2 | 3 |
IRS4 WILD-TYPE | 269 | 175 | 231 | 273 |
P value = 0.174 (Fisher's exact test), Q value = 0.67
Table S500. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
IRS4 MUTATED | 3 | 3 | 0 | 3 | 0 | 1 |
IRS4 WILD-TYPE | 272 | 133 | 206 | 131 | 87 | 119 |
P value = 0.949 (Fisher's exact test), Q value = 1
Table S501. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
IRS4 MUTATED | 2 | 1 | 0 | 0 | 1 |
IRS4 WILD-TYPE | 176 | 119 | 66 | 92 | 111 |
P value = 0.824 (Fisher's exact test), Q value = 1
Table S502. Gene #44: 'IRS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
IRS4 MUTATED | 3 | 1 | 0 |
IRS4 WILD-TYPE | 276 | 180 | 108 |
P value = 0.544 (Fisher's exact test), Q value = 0.95
Table S503. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
NLGN3 MUTATED | 0 | 0 | 3 | 1 | 3 | 0 | 1 | 0 |
NLGN3 WILD-TYPE | 21 | 38 | 111 | 96 | 105 | 73 | 18 | 39 |
P value = 0.562 (Fisher's exact test), Q value = 0.97
Table S504. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
NLGN3 MUTATED | 2 | 1 | 2 | 1 | 2 |
NLGN3 WILD-TYPE | 94 | 151 | 114 | 88 | 54 |
P value = 0.244 (Fisher's exact test), Q value = 0.77
Table S505. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
NLGN3 MUTATED | 1 | 8 | 1 | 1 | 0 |
NLGN3 WILD-TYPE | 246 | 355 | 85 | 230 | 36 |
P value = 0.153 (Fisher's exact test), Q value = 0.63
Table S506. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
NLGN3 MUTATED | 3 | 0 | 1 | 0 | 0 | 1 |
NLGN3 WILD-TYPE | 117 | 84 | 188 | 101 | 116 | 53 |
P value = 0.0546 (Fisher's exact test), Q value = 0.4
Table S507. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
NLGN3 MUTATED | 5 | 0 | 1 |
NLGN3 WILD-TYPE | 143 | 124 | 121 |
P value = 0.255 (Fisher's exact test), Q value = 0.79
Table S508. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
NLGN3 MUTATED | 0 | 0 | 1 | 0 | 5 | 0 |
NLGN3 WILD-TYPE | 59 | 48 | 89 | 53 | 108 | 31 |
P value = 0.789 (Fisher's exact test), Q value = 1
Table S509. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
NLGN3 MUTATED | 7 | 3 | 1 |
NLGN3 WILD-TYPE | 498 | 276 | 189 |
P value = 0.0812 (Fisher's exact test), Q value = 0.46
Table S510. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
NLGN3 MUTATED | 4 | 4 | 1 | 0 | 1 | 1 |
NLGN3 WILD-TYPE | 259 | 147 | 78 | 261 | 167 | 51 |
P value = 0.953 (Fisher's exact test), Q value = 1
Table S511. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
NLGN3 MUTATED | 4 | 2 | 2 | 3 |
NLGN3 WILD-TYPE | 268 | 175 | 231 | 273 |
P value = 0.747 (Fisher's exact test), Q value = 1
Table S512. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
NLGN3 MUTATED | 5 | 2 | 2 | 0 | 1 | 1 |
NLGN3 WILD-TYPE | 270 | 134 | 204 | 134 | 86 | 119 |
P value = 0.608 (Fisher's exact test), Q value = 0.98
Table S513. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
NLGN3 MUTATED | 2 | 0 | 1 | 0 | 1 |
NLGN3 WILD-TYPE | 176 | 120 | 65 | 92 | 111 |
P value = 0.673 (Fisher's exact test), Q value = 0.99
Table S514. Gene #45: 'NLGN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
NLGN3 MUTATED | 2 | 2 | 0 |
NLGN3 WILD-TYPE | 277 | 179 | 108 |
P value = 0.15 (Fisher's exact test), Q value = 0.62
Table S515. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
IL1RAP MUTATED | 2 | 1 | 1 | 4 | 1 |
IL1RAP WILD-TYPE | 245 | 362 | 85 | 227 | 35 |
P value = 0.301 (Fisher's exact test), Q value = 0.83
Table S516. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
IL1RAP MUTATED | 0 | 1 | 2 | 0 | 3 | 1 |
IL1RAP WILD-TYPE | 120 | 83 | 187 | 101 | 113 | 53 |
P value = 0.289 (Fisher's exact test), Q value = 0.83
Table S517. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
IL1RAP MUTATED | 5 | 4 | 0 |
IL1RAP WILD-TYPE | 500 | 275 | 190 |
P value = 0.644 (Fisher's exact test), Q value = 0.99
Table S518. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
IL1RAP MUTATED | 1 | 2 | 0 | 3 | 2 | 1 |
IL1RAP WILD-TYPE | 262 | 149 | 79 | 258 | 166 | 51 |
P value = 0.615 (Fisher's exact test), Q value = 0.98
Table S519. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
IL1RAP MUTATED | 3 | 0 | 2 | 3 |
IL1RAP WILD-TYPE | 269 | 177 | 231 | 273 |
P value = 0.897 (Fisher's exact test), Q value = 1
Table S520. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
IL1RAP MUTATED | 3 | 1 | 1 | 1 | 0 | 2 |
IL1RAP WILD-TYPE | 272 | 135 | 205 | 133 | 87 | 118 |
P value = 0.587 (Fisher's exact test), Q value = 0.98
Table S521. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
IL1RAP MUTATED | 3 | 3 | 0 | 0 | 1 |
IL1RAP WILD-TYPE | 175 | 117 | 66 | 92 | 111 |
P value = 0.686 (Fisher's exact test), Q value = 0.99
Table S522. Gene #46: 'IL1RAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
IL1RAP MUTATED | 5 | 1 | 1 |
IL1RAP WILD-TYPE | 274 | 180 | 107 |
P value = 0.835 (Fisher's exact test), Q value = 1
Table S523. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
USP36 MUTATED | 0 | 0 | 2 | 3 | 2 | 0 | 0 | 0 |
USP36 WILD-TYPE | 21 | 38 | 112 | 94 | 106 | 73 | 19 | 39 |
P value = 0.182 (Fisher's exact test), Q value = 0.69
Table S524. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
USP36 MUTATED | 2 | 1 | 0 | 3 | 1 |
USP36 WILD-TYPE | 94 | 151 | 116 | 86 | 55 |
P value = 0.968 (Fisher's exact test), Q value = 1
Table S525. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
USP36 MUTATED | 2 | 3 | 1 | 2 | 0 |
USP36 WILD-TYPE | 245 | 360 | 85 | 229 | 36 |
P value = 0.73 (Fisher's exact test), Q value = 1
Table S526. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
USP36 MUTATED | 0 | 1 | 1 | 0 | 1 | 0 |
USP36 WILD-TYPE | 120 | 83 | 188 | 101 | 115 | 54 |
P value = 0.642 (Fisher's exact test), Q value = 0.99
Table S527. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
USP36 MUTATED | 3 | 1 | 3 |
USP36 WILD-TYPE | 145 | 123 | 119 |
P value = 0.744 (Fisher's exact test), Q value = 1
Table S528. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
USP36 MUTATED | 1 | 0 | 3 | 0 | 3 | 0 |
USP36 WILD-TYPE | 58 | 48 | 87 | 53 | 110 | 31 |
P value = 0.457 (Fisher's exact test), Q value = 0.91
Table S529. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
USP36 MUTATED | 5 | 3 | 0 |
USP36 WILD-TYPE | 500 | 276 | 190 |
P value = 0.077 (Fisher's exact test), Q value = 0.45
Table S530. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
USP36 MUTATED | 5 | 0 | 0 | 0 | 3 | 0 |
USP36 WILD-TYPE | 258 | 151 | 79 | 261 | 165 | 52 |
P value = 0.676 (Fisher's exact test), Q value = 0.99
Table S531. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
USP36 MUTATED | 3 | 1 | 3 | 1 |
USP36 WILD-TYPE | 269 | 176 | 230 | 275 |
P value = 0.344 (Fisher's exact test), Q value = 0.85
Table S532. Gene #47: 'USP36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
USP36 MUTATED | 2 | 0 | 1 | 1 | 1 | 3 |
USP36 WILD-TYPE | 273 | 136 | 205 | 133 | 86 | 117 |
P value = 0.936 (Fisher's exact test), Q value = 1
Table S533. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CASZ1 MUTATED | 0 | 1 | 1 | 2 | 2 | 1 | 0 | 0 |
CASZ1 WILD-TYPE | 21 | 37 | 113 | 95 | 106 | 72 | 19 | 39 |
P value = 0.854 (Fisher's exact test), Q value = 1
Table S534. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CASZ1 MUTATED | 1 | 3 | 1 | 2 | 0 |
CASZ1 WILD-TYPE | 95 | 149 | 115 | 87 | 56 |
P value = 0.903 (Fisher's exact test), Q value = 1
Table S535. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CASZ1 MUTATED | 5 | 4 | 1 | 3 | 0 |
CASZ1 WILD-TYPE | 242 | 359 | 85 | 228 | 36 |
P value = 0.813 (Fisher's exact test), Q value = 1
Table S536. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CASZ1 MUTATED | 2 | 2 | 2 | 1 | 3 | 0 |
CASZ1 WILD-TYPE | 118 | 82 | 187 | 100 | 113 | 54 |
P value = 0.204 (Fisher's exact test), Q value = 0.71
Table S537. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CASZ1 MUTATED | 1 | 3 | 0 |
CASZ1 WILD-TYPE | 147 | 121 | 122 |
P value = 0.933 (Fisher's exact test), Q value = 1
Table S538. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CASZ1 MUTATED | 0 | 0 | 1 | 1 | 2 | 0 |
CASZ1 WILD-TYPE | 59 | 48 | 89 | 52 | 111 | 31 |
P value = 0.822 (Fisher's exact test), Q value = 1
Table S539. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CASZ1 MUTATED | 7 | 5 | 2 |
CASZ1 WILD-TYPE | 498 | 274 | 188 |
P value = 0.733 (Fisher's exact test), Q value = 1
Table S540. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CASZ1 MUTATED | 2 | 2 | 1 | 5 | 4 | 0 |
CASZ1 WILD-TYPE | 261 | 149 | 78 | 256 | 164 | 52 |
P value = 0.518 (Fisher's exact test), Q value = 0.95
Table S541. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CASZ1 MUTATED | 2 | 3 | 5 | 3 |
CASZ1 WILD-TYPE | 270 | 174 | 228 | 273 |
P value = 0.735 (Fisher's exact test), Q value = 1
Table S542. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CASZ1 MUTATED | 5 | 1 | 3 | 1 | 0 | 3 |
CASZ1 WILD-TYPE | 270 | 135 | 203 | 133 | 87 | 117 |
P value = 0.425 (Fisher's exact test), Q value = 0.88
Table S543. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CASZ1 MUTATED | 4 | 1 | 0 | 0 | 3 |
CASZ1 WILD-TYPE | 174 | 119 | 66 | 92 | 109 |
P value = 0.326 (Fisher's exact test), Q value = 0.84
Table S544. Gene #48: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CASZ1 MUTATED | 6 | 2 | 0 |
CASZ1 WILD-TYPE | 273 | 179 | 108 |
P value = 0.262 (Fisher's exact test), Q value = 0.79
Table S545. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
EYS MUTATED | 1 | 0 | 2 | 3 | 1 | 2 | 2 | 1 |
EYS WILD-TYPE | 20 | 38 | 112 | 94 | 107 | 71 | 17 | 38 |
P value = 0.285 (Fisher's exact test), Q value = 0.83
Table S546. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
EYS MUTATED | 1 | 3 | 6 | 2 | 0 |
EYS WILD-TYPE | 95 | 149 | 110 | 87 | 56 |
P value = 0.0325 (Fisher's exact test), Q value = 0.29
Table S547. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
EYS MUTATED | 6 | 4 | 0 | 11 | 0 |
EYS WILD-TYPE | 241 | 359 | 86 | 220 | 36 |
Figure S99. Get High-res Image Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D49V3.png)
P value = 0.0651 (Fisher's exact test), Q value = 0.43
Table S548. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
EYS MUTATED | 5 | 1 | 0 | 2 | 3 | 1 |
EYS WILD-TYPE | 115 | 83 | 189 | 99 | 113 | 53 |
P value = 0.223 (Fisher's exact test), Q value = 0.74
Table S549. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
EYS MUTATED | 6 | 2 | 1 |
EYS WILD-TYPE | 142 | 122 | 121 |
P value = 0.383 (Fisher's exact test), Q value = 0.88
Table S550. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
EYS MUTATED | 1 | 0 | 3 | 0 | 3 | 2 |
EYS WILD-TYPE | 58 | 48 | 87 | 53 | 110 | 29 |
P value = 0.022 (Fisher's exact test), Q value = 0.23
Table S551. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
EYS MUTATED | 7 | 12 | 2 |
EYS WILD-TYPE | 498 | 267 | 188 |
Figure S100. Get High-res Image Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D49V7.png)
P value = 0.202 (Fisher's exact test), Q value = 0.71
Table S552. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
EYS MUTATED | 2 | 4 | 1 | 7 | 4 | 3 |
EYS WILD-TYPE | 261 | 147 | 78 | 254 | 164 | 49 |
P value = 0.1 (Fisher's exact test), Q value = 0.51
Table S553. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
EYS MUTATED | 11 | 2 | 5 | 3 |
EYS WILD-TYPE | 261 | 175 | 228 | 273 |
P value = 0.0324 (Fisher's exact test), Q value = 0.29
Table S554. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
EYS MUTATED | 7 | 8 | 2 | 1 | 0 | 3 |
EYS WILD-TYPE | 268 | 128 | 204 | 133 | 87 | 117 |
Figure S101. Get High-res Image Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D49V10.png)
P value = 0.371 (Fisher's exact test), Q value = 0.87
Table S555. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
EYS MUTATED | 5 | 5 | 1 | 0 | 3 |
EYS WILD-TYPE | 173 | 115 | 65 | 92 | 109 |
P value = 0.126 (Fisher's exact test), Q value = 0.57
Table S556. Gene #49: 'EYS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
EYS MUTATED | 10 | 4 | 0 |
EYS WILD-TYPE | 269 | 177 | 108 |
P value = 0.144 (Fisher's exact test), Q value = 0.61
Table S557. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
KCNN3 MUTATED | 1 | 0 | 0 | 2 | 0 | 1 | 0 | 1 |
KCNN3 WILD-TYPE | 20 | 38 | 114 | 95 | 108 | 72 | 19 | 38 |
P value = 0.507 (Fisher's exact test), Q value = 0.93
Table S558. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
KCNN3 MUTATED | 0 | 1 | 2 | 2 | 0 |
KCNN3 WILD-TYPE | 96 | 151 | 114 | 87 | 56 |
P value = 0.252 (Fisher's exact test), Q value = 0.78
Table S559. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
KCNN3 MUTATED | 4 | 1 | 0 | 4 | 0 |
KCNN3 WILD-TYPE | 243 | 362 | 86 | 227 | 36 |
P value = 0.122 (Fisher's exact test), Q value = 0.56
Table S560. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
KCNN3 MUTATED | 2 | 0 | 0 | 0 | 2 | 1 |
KCNN3 WILD-TYPE | 118 | 84 | 189 | 101 | 114 | 53 |
P value = 0.391 (Fisher's exact test), Q value = 0.88
Table S561. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
KCNN3 MUTATED | 3 | 1 | 0 |
KCNN3 WILD-TYPE | 145 | 123 | 122 |
P value = 0.768 (Fisher's exact test), Q value = 1
Table S562. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
KCNN3 MUTATED | 0 | 0 | 2 | 1 | 1 | 0 |
KCNN3 WILD-TYPE | 59 | 48 | 88 | 52 | 112 | 31 |
P value = 0.287 (Fisher's exact test), Q value = 0.83
Table S563. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
KCNN3 MUTATED | 5 | 4 | 0 |
KCNN3 WILD-TYPE | 500 | 275 | 190 |
P value = 0.397 (Fisher's exact test), Q value = 0.88
Table S564. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
KCNN3 MUTATED | 1 | 3 | 0 | 2 | 2 | 1 |
KCNN3 WILD-TYPE | 262 | 148 | 79 | 259 | 166 | 51 |
P value = 0.304 (Fisher's exact test), Q value = 0.83
Table S565. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
KCNN3 MUTATED | 4 | 0 | 1 | 4 |
KCNN3 WILD-TYPE | 268 | 177 | 232 | 272 |
P value = 0.713 (Fisher's exact test), Q value = 1
Table S566. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
KCNN3 MUTATED | 3 | 3 | 1 | 1 | 0 | 1 |
KCNN3 WILD-TYPE | 272 | 133 | 205 | 133 | 87 | 119 |
P value = 0.58 (Fisher's exact test), Q value = 0.97
Table S567. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
KCNN3 MUTATED | 2 | 2 | 0 | 0 | 0 |
KCNN3 WILD-TYPE | 176 | 118 | 66 | 92 | 112 |
P value = 0.409 (Fisher's exact test), Q value = 0.88
Table S568. Gene #50: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
KCNN3 MUTATED | 3 | 0 | 1 |
KCNN3 WILD-TYPE | 276 | 181 | 107 |
P value = 0.401 (Fisher's exact test), Q value = 0.88
Table S569. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ZFP36L1 MUTATED | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 |
ZFP36L1 WILD-TYPE | 20 | 38 | 113 | 97 | 107 | 72 | 19 | 38 |
P value = 0.897 (Fisher's exact test), Q value = 1
Table S570. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ZFP36L1 MUTATED | 1 | 2 | 2 | 0 | 0 |
ZFP36L1 WILD-TYPE | 95 | 150 | 114 | 89 | 56 |
P value = 0.00136 (Fisher's exact test), Q value = 0.023
Table S571. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ZFP36L1 MUTATED | 4 | 0 | 3 | 0 | 1 |
ZFP36L1 WILD-TYPE | 243 | 363 | 83 | 231 | 35 |
Figure S102. Get High-res Image Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D51V3.png)
P value = 0.78 (Fisher's exact test), Q value = 1
Table S572. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ZFP36L1 MUTATED | 2 | 1 | 1 | 0 | 1 | 0 |
ZFP36L1 WILD-TYPE | 118 | 83 | 188 | 101 | 115 | 54 |
P value = 0.0613 (Fisher's exact test), Q value = 0.42
Table S573. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ZFP36L1 MUTATED | 0 | 3 | 0 |
ZFP36L1 WILD-TYPE | 148 | 121 | 122 |
P value = 0.0489 (Fisher's exact test), Q value = 0.38
Table S574. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ZFP36L1 MUTATED | 0 | 1 | 0 | 2 | 0 | 0 |
ZFP36L1 WILD-TYPE | 59 | 47 | 90 | 51 | 113 | 31 |
Figure S103. Get High-res Image Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D51V6.png)
P value = 0.184 (Fisher's exact test), Q value = 0.69
Table S575. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ZFP36L1 MUTATED | 7 | 1 | 0 |
ZFP36L1 WILD-TYPE | 498 | 278 | 190 |
P value = 0.731 (Fisher's exact test), Q value = 1
Table S576. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ZFP36L1 MUTATED | 4 | 2 | 0 | 1 | 1 | 0 |
ZFP36L1 WILD-TYPE | 259 | 149 | 79 | 260 | 167 | 52 |
P value = 0.895 (Fisher's exact test), Q value = 1
Table S577. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ZFP36L1 MUTATED | 2 | 1 | 3 | 2 |
ZFP36L1 WILD-TYPE | 270 | 176 | 230 | 274 |
P value = 0.854 (Fisher's exact test), Q value = 1
Table S578. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ZFP36L1 MUTATED | 4 | 1 | 2 | 0 | 0 | 1 |
ZFP36L1 WILD-TYPE | 271 | 135 | 204 | 134 | 87 | 119 |
P value = 0.949 (Fisher's exact test), Q value = 1
Table S579. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ZFP36L1 MUTATED | 2 | 1 | 0 | 0 | 1 |
ZFP36L1 WILD-TYPE | 176 | 119 | 66 | 92 | 111 |
P value = 0.823 (Fisher's exact test), Q value = 1
Table S580. Gene #51: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ZFP36L1 MUTATED | 3 | 1 | 0 |
ZFP36L1 WILD-TYPE | 276 | 180 | 108 |
P value = 0.772 (Fisher's exact test), Q value = 1
Table S581. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ICOSLG MUTATED | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 |
ICOSLG WILD-TYPE | 21 | 38 | 112 | 96 | 108 | 73 | 19 | 39 |
P value = 0.133 (Fisher's exact test), Q value = 0.58
Table S582. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ICOSLG MUTATED | 2 | 0 | 0 | 1 | 0 |
ICOSLG WILD-TYPE | 94 | 152 | 116 | 88 | 56 |
P value = 0.0434 (Fisher's exact test), Q value = 0.36
Table S583. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ICOSLG MUTATED | 1 | 0 | 1 | 2 | 1 |
ICOSLG WILD-TYPE | 246 | 363 | 85 | 229 | 35 |
Figure S104. Get High-res Image Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D52V3.png)
P value = 0.833 (Fisher's exact test), Q value = 1
Table S584. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ICOSLG MUTATED | 0 | 1 | 1 | 1 | 1 | 0 |
ICOSLG WILD-TYPE | 120 | 83 | 188 | 100 | 115 | 54 |
P value = 0.599 (Fisher's exact test), Q value = 0.98
Table S585. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ICOSLG MUTATED | 4 | 1 | 0 |
ICOSLG WILD-TYPE | 501 | 278 | 190 |
P value = 0.968 (Fisher's exact test), Q value = 1
Table S586. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ICOSLG MUTATED | 1 | 1 | 0 | 2 | 1 | 0 |
ICOSLG WILD-TYPE | 262 | 150 | 79 | 259 | 167 | 52 |
P value = 0.772 (Fisher's exact test), Q value = 1
Table S587. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ICOSLG MUTATED | 1 | 0 | 2 | 2 |
ICOSLG WILD-TYPE | 271 | 177 | 231 | 274 |
P value = 0.467 (Fisher's exact test), Q value = 0.91
Table S588. Gene #52: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ICOSLG MUTATED | 1 | 1 | 0 | 1 | 1 | 1 |
ICOSLG WILD-TYPE | 274 | 135 | 206 | 133 | 86 | 119 |
P value = 0.353 (Fisher's exact test), Q value = 0.85
Table S589. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ACTL6B MUTATED | 1 | 0 | 1 | 2 | 0 | 2 | 0 | 0 |
ACTL6B WILD-TYPE | 20 | 38 | 113 | 95 | 108 | 71 | 19 | 39 |
P value = 0.291 (Fisher's exact test), Q value = 0.83
Table S590. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ACTL6B MUTATED | 1 | 0 | 2 | 2 | 1 |
ACTL6B WILD-TYPE | 95 | 152 | 114 | 87 | 55 |
P value = 0.0294 (Fisher's exact test), Q value = 0.27
Table S591. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ACTL6B MUTATED | 1 | 2 | 0 | 5 | 2 |
ACTL6B WILD-TYPE | 246 | 361 | 86 | 226 | 34 |
Figure S105. Get High-res Image Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D53V3.png)
P value = 0.353 (Fisher's exact test), Q value = 0.85
Table S592. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ACTL6B MUTATED | 0 | 1 | 3 | 0 | 3 | 0 |
ACTL6B WILD-TYPE | 120 | 83 | 186 | 101 | 113 | 54 |
P value = 1 (Fisher's exact test), Q value = 1
Table S593. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ACTL6B MUTATED | 2 | 2 | 1 |
ACTL6B WILD-TYPE | 146 | 122 | 121 |
P value = 0.194 (Fisher's exact test), Q value = 0.71
Table S594. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ACTL6B MUTATED | 0 | 1 | 2 | 2 | 0 | 0 |
ACTL6B WILD-TYPE | 59 | 47 | 88 | 51 | 113 | 31 |
P value = 0.837 (Fisher's exact test), Q value = 1
Table S595. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ACTL6B MUTATED | 6 | 3 | 1 |
ACTL6B WILD-TYPE | 499 | 276 | 189 |
P value = 0.194 (Fisher's exact test), Q value = 0.71
Table S596. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ACTL6B MUTATED | 3 | 3 | 1 | 0 | 3 | 0 |
ACTL6B WILD-TYPE | 260 | 148 | 78 | 261 | 165 | 52 |
P value = 0.739 (Fisher's exact test), Q value = 1
Table S597. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ACTL6B MUTATED | 3 | 2 | 1 | 4 |
ACTL6B WILD-TYPE | 269 | 175 | 232 | 272 |
P value = 0.714 (Fisher's exact test), Q value = 1
Table S598. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ACTL6B MUTATED | 3 | 1 | 1 | 1 | 2 | 2 |
ACTL6B WILD-TYPE | 272 | 135 | 205 | 133 | 85 | 118 |
P value = 0.423 (Fisher's exact test), Q value = 0.88
Table S599. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ACTL6B MUTATED | 3 | 0 | 0 | 0 | 2 |
ACTL6B WILD-TYPE | 175 | 120 | 66 | 92 | 110 |
P value = 0.714 (Fisher's exact test), Q value = 1
Table S600. Gene #53: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ACTL6B MUTATED | 3 | 2 | 0 |
ACTL6B WILD-TYPE | 276 | 179 | 108 |
P value = 0.396 (Fisher's exact test), Q value = 0.88
Table S601. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MYH9 MUTATED | 0 | 1 | 0 | 2 | 2 | 1 | 1 | 1 |
MYH9 WILD-TYPE | 21 | 37 | 114 | 95 | 106 | 72 | 18 | 38 |
P value = 0.424 (Fisher's exact test), Q value = 0.88
Table S602. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MYH9 MUTATED | 0 | 4 | 3 | 1 | 0 |
MYH9 WILD-TYPE | 96 | 148 | 113 | 88 | 56 |
P value = 0.366 (Fisher's exact test), Q value = 0.86
Table S603. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MYH9 MUTATED | 4 | 10 | 0 | 2 | 0 |
MYH9 WILD-TYPE | 243 | 353 | 86 | 229 | 36 |
P value = 0.402 (Fisher's exact test), Q value = 0.88
Table S604. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MYH9 MUTATED | 1 | 3 | 7 | 1 | 2 | 0 |
MYH9 WILD-TYPE | 119 | 81 | 182 | 100 | 114 | 54 |
P value = 0.821 (Fisher's exact test), Q value = 1
Table S605. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MYH9 MUTATED | 4 | 2 | 2 |
MYH9 WILD-TYPE | 144 | 122 | 120 |
P value = 0.0538 (Fisher's exact test), Q value = 0.4
Table S606. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MYH9 MUTATED | 1 | 0 | 1 | 2 | 1 | 3 |
MYH9 WILD-TYPE | 58 | 48 | 89 | 51 | 112 | 28 |
P value = 0.663 (Fisher's exact test), Q value = 0.99
Table S607. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MYH9 MUTATED | 8 | 7 | 3 |
MYH9 WILD-TYPE | 497 | 272 | 187 |
P value = 0.146 (Fisher's exact test), Q value = 0.61
Table S608. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MYH9 MUTATED | 1 | 3 | 1 | 8 | 3 | 2 |
MYH9 WILD-TYPE | 262 | 148 | 78 | 253 | 165 | 50 |
P value = 0.736 (Fisher's exact test), Q value = 1
Table S609. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MYH9 MUTATED | 4 | 4 | 6 | 4 |
MYH9 WILD-TYPE | 268 | 173 | 227 | 272 |
P value = 0.402 (Fisher's exact test), Q value = 0.88
Table S610. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MYH9 MUTATED | 3 | 3 | 7 | 3 | 0 | 2 |
MYH9 WILD-TYPE | 272 | 133 | 199 | 131 | 87 | 118 |
P value = 0.508 (Fisher's exact test), Q value = 0.93
Table S611. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MYH9 MUTATED | 3 | 3 | 2 | 0 | 3 |
MYH9 WILD-TYPE | 175 | 117 | 64 | 92 | 109 |
P value = 0.261 (Fisher's exact test), Q value = 0.79
Table S612. Gene #54: 'MYH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MYH9 MUTATED | 6 | 5 | 0 |
MYH9 WILD-TYPE | 273 | 176 | 108 |
P value = 0.815 (Fisher's exact test), Q value = 1
Table S613. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
FBXW7 MUTATED | 0 | 1 | 1 | 2 | 2 | 0 | 0 | 0 |
FBXW7 WILD-TYPE | 21 | 37 | 113 | 95 | 106 | 73 | 19 | 39 |
P value = 0.531 (Fisher's exact test), Q value = 0.95
Table S614. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
FBXW7 MUTATED | 1 | 2 | 0 | 2 | 1 |
FBXW7 WILD-TYPE | 95 | 150 | 116 | 87 | 55 |
P value = 0.157 (Fisher's exact test), Q value = 0.63
Table S615. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
FBXW7 MUTATED | 2 | 5 | 0 | 8 | 0 |
FBXW7 WILD-TYPE | 245 | 358 | 86 | 223 | 36 |
P value = 0.00732 (Fisher's exact test), Q value = 0.1
Table S616. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
FBXW7 MUTATED | 0 | 0 | 2 | 1 | 7 | 1 |
FBXW7 WILD-TYPE | 120 | 84 | 187 | 100 | 109 | 53 |
Figure S106. Get High-res Image Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D55V4.png)
P value = 0.644 (Fisher's exact test), Q value = 0.99
Table S617. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
FBXW7 MUTATED | 2 | 0 | 1 |
FBXW7 WILD-TYPE | 146 | 124 | 121 |
P value = 0.94 (Fisher's exact test), Q value = 1
Table S618. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
FBXW7 MUTATED | 0 | 0 | 1 | 0 | 2 | 0 |
FBXW7 WILD-TYPE | 59 | 48 | 89 | 53 | 111 | 31 |
P value = 0.23 (Fisher's exact test), Q value = 0.75
Table S619. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
FBXW7 MUTATED | 7 | 7 | 1 |
FBXW7 WILD-TYPE | 498 | 272 | 189 |
P value = 0.145 (Fisher's exact test), Q value = 0.61
Table S620. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
FBXW7 MUTATED | 3 | 1 | 0 | 4 | 7 | 0 |
FBXW7 WILD-TYPE | 260 | 150 | 79 | 257 | 161 | 52 |
P value = 0.355 (Fisher's exact test), Q value = 0.85
Table S621. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
FBXW7 MUTATED | 7 | 3 | 3 | 2 |
FBXW7 WILD-TYPE | 265 | 174 | 230 | 274 |
P value = 0.101 (Fisher's exact test), Q value = 0.51
Table S622. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
FBXW7 MUTATED | 3 | 1 | 3 | 2 | 0 | 6 |
FBXW7 WILD-TYPE | 272 | 135 | 203 | 132 | 87 | 114 |
P value = 0.0629 (Fisher's exact test), Q value = 0.42
Table S623. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
FBXW7 MUTATED | 1 | 5 | 0 | 0 | 2 |
FBXW7 WILD-TYPE | 177 | 115 | 66 | 92 | 110 |
P value = 0.899 (Fisher's exact test), Q value = 1
Table S624. Gene #55: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
FBXW7 MUTATED | 5 | 2 | 1 |
FBXW7 WILD-TYPE | 274 | 179 | 107 |
P value = 0.529 (Fisher's exact test), Q value = 0.95
Table S625. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
FRMPD2 MUTATED | 0 | 2 | 1 | 1 | 1 | 2 | 0 | 0 |
FRMPD2 WILD-TYPE | 21 | 36 | 113 | 96 | 107 | 71 | 19 | 39 |
P value = 0.978 (Fisher's exact test), Q value = 1
Table S626. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
FRMPD2 MUTATED | 1 | 3 | 2 | 1 | 0 |
FRMPD2 WILD-TYPE | 95 | 149 | 114 | 88 | 56 |
P value = 0.465 (Fisher's exact test), Q value = 0.91
Table S627. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
FRMPD2 MUTATED | 3 | 4 | 0 | 5 | 1 |
FRMPD2 WILD-TYPE | 244 | 359 | 86 | 226 | 35 |
P value = 0.444 (Fisher's exact test), Q value = 0.9
Table S628. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
FRMPD2 MUTATED | 2 | 1 | 1 | 1 | 4 | 1 |
FRMPD2 WILD-TYPE | 118 | 83 | 188 | 100 | 112 | 53 |
P value = 0.558 (Fisher's exact test), Q value = 0.96
Table S629. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
FRMPD2 MUTATED | 2 | 2 | 0 |
FRMPD2 WILD-TYPE | 146 | 122 | 122 |
P value = 0.933 (Fisher's exact test), Q value = 1
Table S630. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
FRMPD2 MUTATED | 0 | 0 | 1 | 1 | 2 | 0 |
FRMPD2 WILD-TYPE | 59 | 48 | 89 | 52 | 111 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
Table S631. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
FRMPD2 MUTATED | 7 | 4 | 2 |
FRMPD2 WILD-TYPE | 498 | 275 | 188 |
P value = 0.0548 (Fisher's exact test), Q value = 0.4
Table S632. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
FRMPD2 MUTATED | 0 | 4 | 0 | 5 | 4 | 0 |
FRMPD2 WILD-TYPE | 263 | 147 | 79 | 256 | 164 | 52 |
P value = 0.216 (Fisher's exact test), Q value = 0.73
Table S633. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
FRMPD2 MUTATED | 4 | 5 | 1 | 3 |
FRMPD2 WILD-TYPE | 268 | 172 | 232 | 273 |
P value = 0.73 (Fisher's exact test), Q value = 1
Table S634. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
FRMPD2 MUTATED | 5 | 1 | 2 | 2 | 0 | 3 |
FRMPD2 WILD-TYPE | 270 | 135 | 204 | 132 | 87 | 117 |
P value = 0.187 (Fisher's exact test), Q value = 0.69
Table S635. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
FRMPD2 MUTATED | 0 | 2 | 0 | 2 | 2 |
FRMPD2 WILD-TYPE | 178 | 118 | 66 | 90 | 110 |
P value = 0.756 (Fisher's exact test), Q value = 1
Table S636. Gene #56: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
FRMPD2 MUTATED | 2 | 3 | 1 |
FRMPD2 WILD-TYPE | 277 | 178 | 107 |
P value = 0.392 (Fisher's exact test), Q value = 0.88
Table S637. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ZFP36L2 MUTATED | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 |
ZFP36L2 WILD-TYPE | 21 | 38 | 113 | 96 | 108 | 72 | 18 | 39 |
P value = 1 (Fisher's exact test), Q value = 1
Table S638. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ZFP36L2 MUTATED | 1 | 1 | 1 | 1 | 0 |
ZFP36L2 WILD-TYPE | 95 | 151 | 115 | 88 | 56 |
P value = 0.0276 (Fisher's exact test), Q value = 0.26
Table S639. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ZFP36L2 MUTATED | 2 | 2 | 1 | 0 | 2 |
ZFP36L2 WILD-TYPE | 245 | 361 | 85 | 231 | 34 |
Figure S107. Get High-res Image Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D57V3.png)
P value = 0.779 (Fisher's exact test), Q value = 1
Table S640. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ZFP36L2 MUTATED | 2 | 1 | 1 | 0 | 1 | 0 |
ZFP36L2 WILD-TYPE | 118 | 83 | 188 | 101 | 115 | 54 |
P value = 1 (Fisher's exact test), Q value = 1
Table S641. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ZFP36L2 MUTATED | 1 | 1 | 1 |
ZFP36L2 WILD-TYPE | 147 | 123 | 121 |
P value = 0.883 (Fisher's exact test), Q value = 1
Table S642. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ZFP36L2 MUTATED | 0 | 0 | 1 | 1 | 1 | 0 |
ZFP36L2 WILD-TYPE | 59 | 48 | 89 | 52 | 112 | 31 |
P value = 0.526 (Fisher's exact test), Q value = 0.95
Table S643. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ZFP36L2 MUTATED | 5 | 2 | 0 |
ZFP36L2 WILD-TYPE | 500 | 277 | 190 |
P value = 0.567 (Fisher's exact test), Q value = 0.97
Table S644. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ZFP36L2 MUTATED | 2 | 3 | 0 | 1 | 1 | 0 |
ZFP36L2 WILD-TYPE | 261 | 148 | 79 | 260 | 167 | 52 |
P value = 0.785 (Fisher's exact test), Q value = 1
Table S645. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ZFP36L2 MUTATED | 1 | 2 | 2 | 2 |
ZFP36L2 WILD-TYPE | 271 | 175 | 231 | 274 |
P value = 0.903 (Fisher's exact test), Q value = 1
Table S646. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ZFP36L2 MUTATED | 2 | 0 | 2 | 1 | 1 | 1 |
ZFP36L2 WILD-TYPE | 273 | 136 | 204 | 133 | 86 | 119 |
P value = 0.361 (Fisher's exact test), Q value = 0.86
Table S647. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ZFP36L2 MUTATED | 1 | 1 | 0 | 0 | 3 |
ZFP36L2 WILD-TYPE | 177 | 119 | 66 | 92 | 109 |
P value = 0.858 (Fisher's exact test), Q value = 1
Table S648. Gene #57: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ZFP36L2 MUTATED | 2 | 2 | 1 |
ZFP36L2 WILD-TYPE | 277 | 179 | 107 |
P value = 0.0866 (Fisher's exact test), Q value = 0.47
Table S649. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
TPP2 MUTATED | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
TPP2 WILD-TYPE | 20 | 38 | 114 | 97 | 105 | 73 | 19 | 39 |
P value = 0.945 (Fisher's exact test), Q value = 1
Table S650. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
TPP2 MUTATED | 1 | 2 | 1 | 0 | 0 |
TPP2 WILD-TYPE | 95 | 150 | 115 | 89 | 56 |
P value = 0.637 (Fisher's exact test), Q value = 0.99
Table S651. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
TPP2 MUTATED | 4 | 2 | 0 | 2 | 0 |
TPP2 WILD-TYPE | 243 | 361 | 86 | 229 | 36 |
P value = 0.465 (Fisher's exact test), Q value = 0.91
Table S652. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
TPP2 MUTATED | 0 | 0 | 3 | 0 | 2 | 0 |
TPP2 WILD-TYPE | 120 | 84 | 186 | 101 | 114 | 54 |
P value = 0.363 (Fisher's exact test), Q value = 0.86
Table S653. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
TPP2 MUTATED | 6 | 2 | 0 |
TPP2 WILD-TYPE | 499 | 277 | 190 |
P value = 0.917 (Fisher's exact test), Q value = 1
Table S654. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
TPP2 MUTATED | 2 | 2 | 0 | 2 | 2 | 0 |
TPP2 WILD-TYPE | 261 | 149 | 79 | 259 | 166 | 52 |
P value = 0.53 (Fisher's exact test), Q value = 0.95
Table S655. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
TPP2 MUTATED | 3 | 0 | 3 | 2 |
TPP2 WILD-TYPE | 269 | 177 | 230 | 274 |
P value = 0.88 (Fisher's exact test), Q value = 1
Table S656. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
TPP2 MUTATED | 2 | 1 | 1 | 1 | 1 | 2 |
TPP2 WILD-TYPE | 273 | 135 | 205 | 133 | 86 | 118 |
P value = 0.875 (Fisher's exact test), Q value = 1
Table S657. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
TPP2 MUTATED | 2 | 2 | 0 | 0 | 1 |
TPP2 WILD-TYPE | 176 | 118 | 66 | 92 | 111 |
P value = 0.594 (Fisher's exact test), Q value = 0.98
Table S658. Gene #58: 'TPP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
TPP2 MUTATED | 4 | 1 | 0 |
TPP2 WILD-TYPE | 275 | 180 | 108 |
P value = 0.866 (Fisher's exact test), Q value = 1
Table S659. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
C17ORF95 MUTATED | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 |
C17ORF95 WILD-TYPE | 21 | 38 | 113 | 96 | 107 | 73 | 19 | 38 |
P value = 0.858 (Fisher's exact test), Q value = 1
Table S660. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
C17ORF95 MUTATED | 1 | 2 | 0 | 1 | 0 |
C17ORF95 WILD-TYPE | 95 | 150 | 116 | 88 | 56 |
P value = 1 (Fisher's exact test), Q value = 1
Table S661. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
C17ORF95 MUTATED | 2 | 2 | 0 | 1 | 0 |
C17ORF95 WILD-TYPE | 245 | 361 | 86 | 230 | 36 |
P value = 0.842 (Fisher's exact test), Q value = 1
Table S662. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
C17ORF95 MUTATED | 2 | 2 | 1 |
C17ORF95 WILD-TYPE | 503 | 277 | 189 |
P value = 0.968 (Fisher's exact test), Q value = 1
Table S663. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
C17ORF95 MUTATED | 1 | 1 | 0 | 2 | 1 | 0 |
C17ORF95 WILD-TYPE | 262 | 150 | 79 | 259 | 167 | 52 |
P value = 0.727 (Fisher's exact test), Q value = 1
Table S664. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
C17ORF95 MUTATED | 2 | 0 | 2 | 1 |
C17ORF95 WILD-TYPE | 270 | 177 | 231 | 275 |
P value = 0.751 (Fisher's exact test), Q value = 1
Table S665. Gene #59: 'C17ORF95 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
C17ORF95 MUTATED | 2 | 1 | 0 | 1 | 0 | 1 |
C17ORF95 WILD-TYPE | 273 | 135 | 206 | 133 | 87 | 119 |
P value = 0.387 (Fisher's exact test), Q value = 0.88
Table S666. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RUFY1 MUTATED | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 |
RUFY1 WILD-TYPE | 20 | 38 | 113 | 97 | 107 | 73 | 19 | 39 |
P value = 0.727 (Fisher's exact test), Q value = 1
Table S667. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RUFY1 MUTATED | 1 | 2 | 0 | 0 | 0 |
RUFY1 WILD-TYPE | 95 | 150 | 116 | 89 | 56 |
P value = 0.313 (Fisher's exact test), Q value = 0.83
Table S668. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RUFY1 MUTATED | 1 | 2 | 1 | 1 | 1 |
RUFY1 WILD-TYPE | 246 | 361 | 85 | 230 | 35 |
P value = 0.291 (Fisher's exact test), Q value = 0.83
Table S669. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
RUFY1 MUTATED | 2 | 1 | 0 | 0 | 1 | 0 |
RUFY1 WILD-TYPE | 118 | 83 | 189 | 101 | 115 | 54 |
P value = 0.653 (Fisher's exact test), Q value = 0.99
Table S670. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RUFY1 MUTATED | 4 | 2 | 0 |
RUFY1 WILD-TYPE | 501 | 277 | 190 |
P value = 0.24 (Fisher's exact test), Q value = 0.76
Table S671. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RUFY1 MUTATED | 0 | 3 | 0 | 2 | 1 | 0 |
RUFY1 WILD-TYPE | 263 | 148 | 79 | 259 | 167 | 52 |
P value = 0.851 (Fisher's exact test), Q value = 1
Table S672. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RUFY1 MUTATED | 1 | 1 | 1 | 3 |
RUFY1 WILD-TYPE | 271 | 176 | 232 | 273 |
P value = 0.132 (Fisher's exact test), Q value = 0.58
Table S673. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RUFY1 MUTATED | 5 | 0 | 0 | 0 | 0 | 1 |
RUFY1 WILD-TYPE | 270 | 136 | 206 | 134 | 87 | 119 |
P value = 0.899 (Fisher's exact test), Q value = 1
Table S674. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
RUFY1 MUTATED | 2 | 1 | 0 | 1 | 0 |
RUFY1 WILD-TYPE | 176 | 119 | 66 | 91 | 112 |
P value = 0.411 (Fisher's exact test), Q value = 0.88
Table S675. Gene #60: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
RUFY1 MUTATED | 3 | 0 | 1 |
RUFY1 WILD-TYPE | 276 | 181 | 107 |
P value = 0.0974 (Fisher's exact test), Q value = 0.51
Table S676. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MED23 MUTATED | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 3 |
MED23 WILD-TYPE | 21 | 37 | 113 | 97 | 107 | 72 | 19 | 36 |
P value = 0.283 (Fisher's exact test), Q value = 0.83
Table S677. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MED23 MUTATED | 1 | 5 | 1 | 0 | 0 |
MED23 WILD-TYPE | 95 | 147 | 115 | 89 | 56 |
P value = 0.355 (Fisher's exact test), Q value = 0.85
Table S678. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MED23 MUTATED | 3 | 9 | 1 | 1 | 0 |
MED23 WILD-TYPE | 244 | 354 | 85 | 230 | 36 |
P value = 0.0766 (Fisher's exact test), Q value = 0.45
Table S679. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MED23 MUTATED | 2 | 2 | 4 | 0 | 0 | 3 |
MED23 WILD-TYPE | 118 | 82 | 185 | 101 | 116 | 51 |
P value = 0.0753 (Fisher's exact test), Q value = 0.45
Table S680. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MED23 MUTATED | 0 | 1 | 3 |
MED23 WILD-TYPE | 148 | 123 | 119 |
P value = 0.222 (Fisher's exact test), Q value = 0.74
Table S681. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MED23 MUTATED | 0 | 2 | 0 | 0 | 2 | 0 |
MED23 WILD-TYPE | 59 | 46 | 90 | 53 | 111 | 31 |
P value = 0.047 (Fisher's exact test), Q value = 0.37
Table S682. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MED23 MUTATED | 7 | 1 | 6 |
MED23 WILD-TYPE | 498 | 278 | 184 |
Figure S108. Get High-res Image Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D61V7.png)
P value = 0.0731 (Fisher's exact test), Q value = 0.45
Table S683. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MED23 MUTATED | 3 | 1 | 1 | 9 | 0 | 0 |
MED23 WILD-TYPE | 260 | 150 | 78 | 252 | 168 | 52 |
P value = 0.353 (Fisher's exact test), Q value = 0.85
Table S684. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MED23 MUTATED | 2 | 5 | 3 | 4 |
MED23 WILD-TYPE | 270 | 172 | 230 | 272 |
P value = 0.389 (Fisher's exact test), Q value = 0.88
Table S685. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MED23 MUTATED | 3 | 1 | 5 | 3 | 2 | 0 |
MED23 WILD-TYPE | 272 | 135 | 201 | 131 | 85 | 120 |
P value = 0.283 (Fisher's exact test), Q value = 0.83
Table S686. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MED23 MUTATED | 2 | 0 | 1 | 3 | 1 |
MED23 WILD-TYPE | 176 | 120 | 65 | 89 | 111 |
P value = 0.414 (Fisher's exact test), Q value = 0.88
Table S687. Gene #61: 'MED23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MED23 MUTATED | 2 | 3 | 2 |
MED23 WILD-TYPE | 277 | 178 | 106 |
P value = 0.946 (Fisher's exact test), Q value = 1
Table S688. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PAX2 MUTATED | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 |
PAX2 WILD-TYPE | 21 | 38 | 113 | 97 | 107 | 72 | 19 | 39 |
P value = 0.335 (Fisher's exact test), Q value = 0.84
Table S689. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PAX2 MUTATED | 1 | 0 | 1 | 0 | 1 |
PAX2 WILD-TYPE | 95 | 152 | 115 | 89 | 55 |
P value = 0.298 (Fisher's exact test), Q value = 0.83
Table S690. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PAX2 MUTATED | 0 | 1 | 0 | 3 | 0 |
PAX2 WILD-TYPE | 247 | 362 | 86 | 228 | 36 |
P value = 0.204 (Fisher's exact test), Q value = 0.71
Table S691. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
PAX2 MUTATED | 0 | 1 | 2 |
PAX2 WILD-TYPE | 148 | 123 | 120 |
P value = 0.0567 (Fisher's exact test), Q value = 0.41
Table S692. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
PAX2 MUTATED | 1 | 2 | 0 | 0 | 0 | 0 |
PAX2 WILD-TYPE | 58 | 46 | 90 | 53 | 113 | 31 |
P value = 0.316 (Fisher's exact test), Q value = 0.83
Table S693. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PAX2 MUTATED | 4 | 0 | 0 |
PAX2 WILD-TYPE | 501 | 279 | 190 |
P value = 0.287 (Fisher's exact test), Q value = 0.83
Table S694. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PAX2 MUTATED | 2 | 2 | 0 | 0 | 0 | 0 |
PAX2 WILD-TYPE | 261 | 149 | 79 | 261 | 168 | 52 |
P value = 0.776 (Fisher's exact test), Q value = 1
Table S695. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PAX2 MUTATED | 1 | 0 | 2 | 1 |
PAX2 WILD-TYPE | 271 | 177 | 231 | 275 |
P value = 0.477 (Fisher's exact test), Q value = 0.91
Table S696. Gene #62: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PAX2 MUTATED | 2 | 0 | 0 | 1 | 1 | 0 |
PAX2 WILD-TYPE | 273 | 136 | 206 | 133 | 86 | 120 |
P value = 0.84 (Fisher's exact test), Q value = 1
Table S697. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MED12 MUTATED | 0 | 1 | 1 | 1 | 3 | 2 | 0 | 0 |
MED12 WILD-TYPE | 21 | 37 | 113 | 96 | 105 | 71 | 19 | 39 |
P value = 0.78 (Fisher's exact test), Q value = 1
Table S698. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MED12 MUTATED | 1 | 2 | 2 | 1 | 2 |
MED12 WILD-TYPE | 95 | 150 | 114 | 88 | 54 |
P value = 0.398 (Fisher's exact test), Q value = 0.88
Table S699. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MED12 MUTATED | 6 | 11 | 0 | 3 | 0 |
MED12 WILD-TYPE | 241 | 352 | 86 | 228 | 36 |
P value = 0.678 (Fisher's exact test), Q value = 0.99
Table S700. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MED12 MUTATED | 2 | 3 | 6 | 2 | 1 | 2 |
MED12 WILD-TYPE | 118 | 81 | 183 | 99 | 115 | 52 |
P value = 0.263 (Fisher's exact test), Q value = 0.79
Table S701. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MED12 MUTATED | 1 | 1 | 4 |
MED12 WILD-TYPE | 147 | 123 | 118 |
P value = 0.0777 (Fisher's exact test), Q value = 0.45
Table S702. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MED12 MUTATED | 3 | 0 | 1 | 1 | 0 | 1 |
MED12 WILD-TYPE | 56 | 48 | 89 | 52 | 113 | 30 |
P value = 0.644 (Fisher's exact test), Q value = 0.99
Table S703. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MED12 MUTATED | 13 | 4 | 4 |
MED12 WILD-TYPE | 492 | 275 | 186 |
P value = 0.41 (Fisher's exact test), Q value = 0.88
Table S704. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MED12 MUTATED | 8 | 2 | 3 | 4 | 2 | 2 |
MED12 WILD-TYPE | 255 | 149 | 76 | 257 | 166 | 50 |
P value = 0.952 (Fisher's exact test), Q value = 1
Table S705. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MED12 MUTATED | 5 | 4 | 6 | 6 |
MED12 WILD-TYPE | 267 | 173 | 227 | 270 |
P value = 0.88 (Fisher's exact test), Q value = 1
Table S706. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MED12 MUTATED | 8 | 2 | 5 | 3 | 2 | 1 |
MED12 WILD-TYPE | 267 | 134 | 201 | 131 | 85 | 119 |
P value = 0.35 (Fisher's exact test), Q value = 0.85
Table S707. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MED12 MUTATED | 4 | 1 | 1 | 0 | 4 |
MED12 WILD-TYPE | 174 | 119 | 65 | 92 | 108 |
P value = 0.481 (Fisher's exact test), Q value = 0.91
Table S708. Gene #63: 'MED12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MED12 MUTATED | 4 | 5 | 1 |
MED12 WILD-TYPE | 275 | 176 | 107 |
P value = 0.233 (Fisher's exact test), Q value = 0.75
Table S709. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CHD4 MUTATED | 0 | 2 | 0 | 2 | 2 | 1 | 1 | 1 |
CHD4 WILD-TYPE | 21 | 36 | 114 | 95 | 106 | 72 | 18 | 38 |
P value = 0.359 (Fisher's exact test), Q value = 0.85
Table S710. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CHD4 MUTATED | 0 | 5 | 2 | 2 | 0 |
CHD4 WILD-TYPE | 96 | 147 | 114 | 87 | 56 |
P value = 0.845 (Fisher's exact test), Q value = 1
Table S711. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CHD4 MUTATED | 4 | 10 | 1 | 4 | 0 |
CHD4 WILD-TYPE | 243 | 353 | 85 | 227 | 36 |
P value = 0.631 (Fisher's exact test), Q value = 0.99
Table S712. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CHD4 MUTATED | 2 | 2 | 4 | 4 | 1 | 2 |
CHD4 WILD-TYPE | 118 | 82 | 185 | 97 | 115 | 52 |
P value = 0.292 (Fisher's exact test), Q value = 0.83
Table S713. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CHD4 MUTATED | 3 | 3 | 0 |
CHD4 WILD-TYPE | 145 | 121 | 122 |
P value = 0.393 (Fisher's exact test), Q value = 0.88
Table S714. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CHD4 MUTATED | 0 | 0 | 2 | 2 | 1 | 1 |
CHD4 WILD-TYPE | 59 | 48 | 88 | 51 | 112 | 30 |
P value = 0.554 (Fisher's exact test), Q value = 0.96
Table S715. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CHD4 MUTATED | 8 | 6 | 5 |
CHD4 WILD-TYPE | 497 | 273 | 185 |
P value = 0.272 (Fisher's exact test), Q value = 0.81
Table S716. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CHD4 MUTATED | 2 | 5 | 3 | 6 | 3 | 0 |
CHD4 WILD-TYPE | 261 | 146 | 76 | 255 | 165 | 52 |
P value = 0.299 (Fisher's exact test), Q value = 0.83
Table S717. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CHD4 MUTATED | 4 | 6 | 6 | 3 |
CHD4 WILD-TYPE | 268 | 171 | 227 | 273 |
P value = 0.437 (Fisher's exact test), Q value = 0.89
Table S718. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CHD4 MUTATED | 6 | 0 | 6 | 3 | 1 | 3 |
CHD4 WILD-TYPE | 269 | 136 | 200 | 131 | 86 | 117 |
P value = 0.75 (Fisher's exact test), Q value = 1
Table S719. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CHD4 MUTATED | 3 | 1 | 2 | 2 | 3 |
CHD4 WILD-TYPE | 175 | 119 | 64 | 90 | 109 |
P value = 0.312 (Fisher's exact test), Q value = 0.83
Table S720. Gene #64: 'CHD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CHD4 MUTATED | 3 | 5 | 3 |
CHD4 WILD-TYPE | 276 | 176 | 105 |
P value = 0.481 (Fisher's exact test), Q value = 0.91
Table S721. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PFKP MUTATED | 0 | 0 | 2 | 3 | 0 | 0 | 0 | 0 |
PFKP WILD-TYPE | 21 | 38 | 112 | 94 | 108 | 73 | 19 | 39 |
P value = 0.0255 (Fisher's exact test), Q value = 0.25
Table S722. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PFKP MUTATED | 2 | 0 | 0 | 3 | 0 |
PFKP WILD-TYPE | 94 | 152 | 116 | 86 | 56 |
Figure S109. Get High-res Image Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D65V2.png)
P value = 0.186 (Fisher's exact test), Q value = 0.69
Table S723. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PFKP MUTATED | 1 | 1 | 0 | 3 | 1 |
PFKP WILD-TYPE | 246 | 362 | 86 | 228 | 35 |
P value = 0.392 (Fisher's exact test), Q value = 0.88
Table S724. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
PFKP MUTATED | 3 | 1 | 0 |
PFKP WILD-TYPE | 145 | 123 | 122 |
P value = 0.794 (Fisher's exact test), Q value = 1
Table S725. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
PFKP MUTATED | 0 | 0 | 2 | 0 | 2 | 0 |
PFKP WILD-TYPE | 59 | 48 | 88 | 53 | 111 | 31 |
P value = 0.418 (Fisher's exact test), Q value = 0.88
Table S726. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PFKP MUTATED | 3 | 3 | 0 |
PFKP WILD-TYPE | 502 | 276 | 190 |
P value = 0.302 (Fisher's exact test), Q value = 0.83
Table S727. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PFKP MUTATED | 2 | 1 | 0 | 0 | 3 | 0 |
PFKP WILD-TYPE | 261 | 150 | 79 | 261 | 165 | 52 |
P value = 0.309 (Fisher's exact test), Q value = 0.83
Table S728. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PFKP MUTATED | 4 | 0 | 1 | 1 |
PFKP WILD-TYPE | 268 | 177 | 232 | 275 |
P value = 0.205 (Fisher's exact test), Q value = 0.71
Table S729. Gene #65: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PFKP MUTATED | 2 | 0 | 1 | 0 | 0 | 3 |
PFKP WILD-TYPE | 273 | 136 | 205 | 134 | 87 | 117 |
P value = 0.895 (Fisher's exact test), Q value = 1
Table S730. Gene #66: 'RHBG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RHBG MUTATED | 2 | 1 | 0 | 1 | 0 |
RHBG WILD-TYPE | 245 | 362 | 86 | 230 | 36 |
P value = 0.0077 (Fisher's exact test), Q value = 0.1
Table S731. Gene #66: 'RHBG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RHBG MUTATED | 0 | 4 | 0 |
RHBG WILD-TYPE | 505 | 275 | 190 |
Figure S110. Get High-res Image Gene #66: 'RHBG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D66V7.png)
P value = 0.106 (Fisher's exact test), Q value = 0.53
Table S732. Gene #66: 'RHBG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RHBG MUTATED | 0 | 2 | 0 | 0 | 2 | 0 |
RHBG WILD-TYPE | 263 | 149 | 79 | 261 | 166 | 52 |
P value = 0.524 (Fisher's exact test), Q value = 0.95
Table S733. Gene #66: 'RHBG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RHBG MUTATED | 2 | 0 | 0 | 2 |
RHBG WILD-TYPE | 270 | 177 | 233 | 274 |
P value = 0.265 (Fisher's exact test), Q value = 0.8
Table S734. Gene #66: 'RHBG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RHBG MUTATED | 2 | 0 | 0 | 0 | 0 | 2 |
RHBG WILD-TYPE | 273 | 136 | 206 | 134 | 87 | 118 |
P value = 0.69 (Fisher's exact test), Q value = 1
Table S735. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PSIP1 MUTATED | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 |
PSIP1 WILD-TYPE | 21 | 38 | 114 | 96 | 107 | 72 | 19 | 38 |
P value = 0.719 (Fisher's exact test), Q value = 1
Table S736. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PSIP1 MUTATED | 0 | 1 | 1 | 1 | 1 |
PSIP1 WILD-TYPE | 96 | 151 | 115 | 88 | 55 |
P value = 0.57 (Fisher's exact test), Q value = 0.97
Table S737. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PSIP1 MUTATED | 2 | 3 | 2 | 1 | 0 |
PSIP1 WILD-TYPE | 245 | 360 | 84 | 230 | 36 |
P value = 0.756 (Fisher's exact test), Q value = 1
Table S738. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
PSIP1 MUTATED | 2 | 0 | 2 | 1 | 0 | 0 |
PSIP1 WILD-TYPE | 118 | 84 | 187 | 100 | 116 | 54 |
P value = 0.833 (Fisher's exact test), Q value = 1
Table S739. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
PSIP1 MUTATED | 1 | 2 | 1 |
PSIP1 WILD-TYPE | 147 | 122 | 121 |
P value = 0.965 (Fisher's exact test), Q value = 1
Table S740. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
PSIP1 MUTATED | 1 | 0 | 1 | 1 | 1 | 0 |
PSIP1 WILD-TYPE | 58 | 48 | 89 | 52 | 112 | 31 |
P value = 0.362 (Fisher's exact test), Q value = 0.86
Table S741. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PSIP1 MUTATED | 6 | 2 | 0 |
PSIP1 WILD-TYPE | 499 | 277 | 190 |
P value = 0.936 (Fisher's exact test), Q value = 1
Table S742. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PSIP1 MUTATED | 3 | 2 | 0 | 2 | 1 | 0 |
PSIP1 WILD-TYPE | 260 | 149 | 79 | 259 | 167 | 52 |
P value = 0.21 (Fisher's exact test), Q value = 0.72
Table S743. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PSIP1 MUTATED | 0 | 1 | 2 | 4 |
PSIP1 WILD-TYPE | 272 | 176 | 231 | 272 |
P value = 0.455 (Fisher's exact test), Q value = 0.91
Table S744. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PSIP1 MUTATED | 2 | 1 | 1 | 3 | 0 | 0 |
PSIP1 WILD-TYPE | 273 | 135 | 205 | 131 | 87 | 120 |
P value = 0.859 (Fisher's exact test), Q value = 1
Table S745. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
PSIP1 MUTATED | 2 | 0 | 0 | 1 | 1 |
PSIP1 WILD-TYPE | 176 | 120 | 66 | 91 | 111 |
P value = 0.133 (Fisher's exact test), Q value = 0.58
Table S746. Gene #67: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
PSIP1 MUTATED | 2 | 0 | 2 |
PSIP1 WILD-TYPE | 277 | 181 | 106 |
P value = 0.565 (Fisher's exact test), Q value = 0.97
Table S747. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
LRIG2 MUTATED | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 |
LRIG2 WILD-TYPE | 21 | 38 | 111 | 96 | 108 | 73 | 19 | 39 |
P value = 0.0316 (Fisher's exact test), Q value = 0.28
Table S748. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
LRIG2 MUTATED | 3 | 0 | 0 | 1 | 0 |
LRIG2 WILD-TYPE | 93 | 152 | 116 | 88 | 56 |
Figure S111. Get High-res Image Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D68V2.png)
P value = 0.247 (Fisher's exact test), Q value = 0.77
Table S749. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
LRIG2 MUTATED | 3 | 1 | 0 | 2 | 1 |
LRIG2 WILD-TYPE | 244 | 362 | 86 | 229 | 35 |
P value = 0.111 (Fisher's exact test), Q value = 0.54
Table S750. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
LRIG2 MUTATED | 3 | 0 | 0 | 0 | 1 | 0 |
LRIG2 WILD-TYPE | 117 | 84 | 189 | 101 | 115 | 54 |
P value = 0.157 (Fisher's exact test), Q value = 0.63
Table S751. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
LRIG2 MUTATED | 1 | 0 | 3 |
LRIG2 WILD-TYPE | 147 | 124 | 119 |
P value = 0.722 (Fisher's exact test), Q value = 1
Table S752. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
LRIG2 MUTATED | 0 | 0 | 1 | 0 | 3 | 0 |
LRIG2 WILD-TYPE | 59 | 48 | 89 | 53 | 110 | 31 |
P value = 0.461 (Fisher's exact test), Q value = 0.91
Table S753. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
LRIG2 MUTATED | 4 | 3 | 0 |
LRIG2 WILD-TYPE | 501 | 276 | 190 |
P value = 0.886 (Fisher's exact test), Q value = 1
Table S754. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
LRIG2 MUTATED | 2 | 1 | 0 | 2 | 1 | 1 |
LRIG2 WILD-TYPE | 261 | 150 | 79 | 259 | 167 | 51 |
P value = 0.621 (Fisher's exact test), Q value = 0.99
Table S755. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
LRIG2 MUTATED | 3 | 0 | 2 | 2 |
LRIG2 WILD-TYPE | 269 | 177 | 231 | 274 |
P value = 0.608 (Fisher's exact test), Q value = 0.98
Table S756. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
LRIG2 MUTATED | 4 | 0 | 2 | 0 | 0 | 1 |
LRIG2 WILD-TYPE | 271 | 136 | 204 | 134 | 87 | 119 |
P value = 0.857 (Fisher's exact test), Q value = 1
Table S757. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
LRIG2 MUTATED | 2 | 1 | 0 | 0 | 0 |
LRIG2 WILD-TYPE | 176 | 119 | 66 | 92 | 112 |
P value = 1 (Fisher's exact test), Q value = 1
Table S758. Gene #68: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
LRIG2 MUTATED | 2 | 1 | 0 |
LRIG2 WILD-TYPE | 277 | 180 | 108 |
P value = 0.59 (Fisher's exact test), Q value = 0.98
Table S759. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RIBC1 MUTATED | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 0 |
RIBC1 WILD-TYPE | 21 | 37 | 113 | 97 | 106 | 73 | 19 | 39 |
P value = 0.383 (Fisher's exact test), Q value = 0.88
Table S760. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RIBC1 MUTATED | 1 | 3 | 0 | 0 | 0 |
RIBC1 WILD-TYPE | 95 | 149 | 116 | 89 | 56 |
P value = 0.757 (Fisher's exact test), Q value = 1
Table S761. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RIBC1 MUTATED | 2 | 2 | 0 | 0 | 0 |
RIBC1 WILD-TYPE | 245 | 361 | 86 | 231 | 36 |
P value = 0.506 (Fisher's exact test), Q value = 0.93
Table S762. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
RIBC1 MUTATED | 1 | 0 | 1 | 0 | 0 | 1 |
RIBC1 WILD-TYPE | 119 | 84 | 188 | 101 | 116 | 53 |
P value = 0.527 (Fisher's exact test), Q value = 0.95
Table S763. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RIBC1 MUTATED | 3 | 0 | 1 |
RIBC1 WILD-TYPE | 502 | 279 | 189 |
P value = 0.606 (Fisher's exact test), Q value = 0.98
Table S764. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RIBC1 MUTATED | 1 | 0 | 0 | 3 | 0 | 0 |
RIBC1 WILD-TYPE | 262 | 151 | 79 | 258 | 168 | 52 |
P value = 0.447 (Fisher's exact test), Q value = 0.9
Table S765. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RIBC1 MUTATED | 1 | 1 | 2 | 0 |
RIBC1 WILD-TYPE | 271 | 176 | 231 | 276 |
P value = 0.327 (Fisher's exact test), Q value = 0.84
Table S766. Gene #69: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RIBC1 MUTATED | 1 | 1 | 0 | 2 | 0 | 0 |
RIBC1 WILD-TYPE | 274 | 135 | 206 | 132 | 87 | 120 |
P value = 0.297 (Fisher's exact test), Q value = 0.83
Table S767. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PLK2 MUTATED | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
PLK2 WILD-TYPE | 20 | 38 | 114 | 96 | 107 | 73 | 19 | 39 |
P value = 0.924 (Fisher's exact test), Q value = 1
Table S768. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PLK2 MUTATED | 0 | 1 | 1 | 1 | 0 |
PLK2 WILD-TYPE | 96 | 151 | 115 | 88 | 56 |
P value = 0.975 (Fisher's exact test), Q value = 1
Table S769. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PLK2 MUTATED | 3 | 4 | 0 | 2 | 0 |
PLK2 WILD-TYPE | 244 | 359 | 86 | 229 | 36 |
P value = 0.892 (Fisher's exact test), Q value = 1
Table S770. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
PLK2 MUTATED | 1 | 0 | 2 | 1 | 2 | 1 |
PLK2 WILD-TYPE | 119 | 84 | 187 | 100 | 114 | 53 |
P value = 0.911 (Fisher's exact test), Q value = 1
Table S771. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PLK2 MUTATED | 5 | 3 | 1 |
PLK2 WILD-TYPE | 500 | 276 | 189 |
P value = 0.798 (Fisher's exact test), Q value = 1
Table S772. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PLK2 MUTATED | 1 | 2 | 1 | 3 | 2 | 0 |
PLK2 WILD-TYPE | 262 | 149 | 78 | 258 | 166 | 52 |
P value = 0.97 (Fisher's exact test), Q value = 1
Table S773. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PLK2 MUTATED | 2 | 2 | 2 | 3 |
PLK2 WILD-TYPE | 270 | 175 | 231 | 273 |
P value = 0.524 (Fisher's exact test), Q value = 0.95
Table S774. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PLK2 MUTATED | 3 | 0 | 3 | 0 | 1 | 2 |
PLK2 WILD-TYPE | 272 | 136 | 203 | 134 | 86 | 118 |
P value = 0.82 (Fisher's exact test), Q value = 1
Table S775. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
PLK2 MUTATED | 1 | 1 | 1 | 0 | 1 |
PLK2 WILD-TYPE | 177 | 119 | 65 | 92 | 111 |
P value = 0.673 (Fisher's exact test), Q value = 0.99
Table S776. Gene #70: 'PLK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
PLK2 MUTATED | 2 | 2 | 0 |
PLK2 WILD-TYPE | 277 | 179 | 108 |
P value = 0.193 (Fisher's exact test), Q value = 0.71
Table S777. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
ANKRD20A4 MUTATED | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 |
ANKRD20A4 WILD-TYPE | 21 | 38 | 114 | 97 | 107 | 72 | 18 | 39 |
P value = 0.0962 (Fisher's exact test), Q value = 0.51
Table S778. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
ANKRD20A4 MUTATED | 0 | 0 | 2 | 0 | 1 |
ANKRD20A4 WILD-TYPE | 96 | 152 | 114 | 89 | 55 |
P value = 0.715 (Fisher's exact test), Q value = 1
Table S779. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
ANKRD20A4 MUTATED | 1 | 3 | 0 | 3 | 0 |
ANKRD20A4 WILD-TYPE | 246 | 360 | 86 | 228 | 36 |
P value = 0.708 (Fisher's exact test), Q value = 1
Table S780. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
ANKRD20A4 MUTATED | 1 | 0 | 2 | 1 | 0 | 1 |
ANKRD20A4 WILD-TYPE | 119 | 84 | 187 | 100 | 116 | 53 |
P value = 0.645 (Fisher's exact test), Q value = 0.99
Table S781. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
ANKRD20A4 MUTATED | 2 | 0 | 1 |
ANKRD20A4 WILD-TYPE | 146 | 124 | 121 |
P value = 1 (Fisher's exact test), Q value = 1
Table S782. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
ANKRD20A4 MUTATED | 1 | 0 | 1 | 0 | 1 | 0 |
ANKRD20A4 WILD-TYPE | 58 | 48 | 89 | 53 | 112 | 31 |
P value = 0.231 (Fisher's exact test), Q value = 0.75
Table S783. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
ANKRD20A4 MUTATED | 2 | 2 | 3 |
ANKRD20A4 WILD-TYPE | 503 | 277 | 187 |
P value = 0.331 (Fisher's exact test), Q value = 0.84
Table S784. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
ANKRD20A4 MUTATED | 2 | 0 | 1 | 3 | 0 | 1 |
ANKRD20A4 WILD-TYPE | 261 | 151 | 78 | 258 | 168 | 51 |
P value = 0.881 (Fisher's exact test), Q value = 1
Table S785. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
ANKRD20A4 MUTATED | 2 | 2 | 1 | 2 |
ANKRD20A4 WILD-TYPE | 270 | 175 | 232 | 274 |
P value = 0.967 (Fisher's exact test), Q value = 1
Table S786. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
ANKRD20A4 MUTATED | 3 | 1 | 2 | 1 | 0 | 0 |
ANKRD20A4 WILD-TYPE | 272 | 135 | 204 | 133 | 87 | 120 |
P value = 0.48 (Fisher's exact test), Q value = 0.91
Table S787. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
ANKRD20A4 MUTATED | 1 | 0 | 1 | 1 | 2 |
ANKRD20A4 WILD-TYPE | 177 | 120 | 65 | 91 | 110 |
P value = 0.0365 (Fisher's exact test), Q value = 0.31
Table S788. Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
ANKRD20A4 MUTATED | 0 | 3 | 2 |
ANKRD20A4 WILD-TYPE | 279 | 178 | 106 |
Figure S112. Get High-res Image Gene #71: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D71V12.png)
P value = 0.416 (Fisher's exact test), Q value = 0.88
Table S789. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
PHACTR1 MUTATED | 1 | 0 | 0 | 2 | 1 | 1 | 0 | 0 |
PHACTR1 WILD-TYPE | 20 | 38 | 114 | 95 | 107 | 72 | 19 | 39 |
P value = 0.43 (Fisher's exact test), Q value = 0.89
Table S790. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
PHACTR1 MUTATED | 0 | 1 | 3 | 1 | 0 |
PHACTR1 WILD-TYPE | 96 | 151 | 113 | 88 | 56 |
P value = 0.815 (Fisher's exact test), Q value = 1
Table S791. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
PHACTR1 MUTATED | 2 | 2 | 1 | 1 | 0 |
PHACTR1 WILD-TYPE | 245 | 361 | 85 | 230 | 36 |
P value = 0.341 (Fisher's exact test), Q value = 0.85
Table S792. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
PHACTR1 MUTATED | 1 | 2 | 1 | 0 | 0 | 0 |
PHACTR1 WILD-TYPE | 119 | 82 | 188 | 101 | 116 | 54 |
P value = 0.166 (Fisher's exact test), Q value = 0.64
Table S793. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
PHACTR1 MUTATED | 4 | 0 | 1 |
PHACTR1 WILD-TYPE | 144 | 124 | 121 |
P value = 0.937 (Fisher's exact test), Q value = 1
Table S794. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
PHACTR1 MUTATED | 1 | 0 | 2 | 0 | 2 | 0 |
PHACTR1 WILD-TYPE | 58 | 48 | 88 | 53 | 111 | 31 |
P value = 0.201 (Fisher's exact test), Q value = 0.71
Table S795. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
PHACTR1 MUTATED | 3 | 4 | 0 |
PHACTR1 WILD-TYPE | 502 | 275 | 190 |
P value = 0.0795 (Fisher's exact test), Q value = 0.46
Table S796. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
PHACTR1 MUTATED | 0 | 3 | 0 | 1 | 2 | 1 |
PHACTR1 WILD-TYPE | 263 | 148 | 79 | 260 | 166 | 51 |
P value = 0.412 (Fisher's exact test), Q value = 0.88
Table S797. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
PHACTR1 MUTATED | 4 | 0 | 1 | 2 |
PHACTR1 WILD-TYPE | 268 | 177 | 232 | 274 |
P value = 0.0228 (Fisher's exact test), Q value = 0.23
Table S798. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
PHACTR1 MUTATED | 1 | 4 | 0 | 2 | 0 | 0 |
PHACTR1 WILD-TYPE | 274 | 132 | 206 | 132 | 87 | 120 |
Figure S113. Get High-res Image Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D72V10.png)
P value = 1 (Fisher's exact test), Q value = 1
Table S799. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
PHACTR1 MUTATED | 1 | 1 | 0 | 0 | 1 |
PHACTR1 WILD-TYPE | 177 | 119 | 66 | 92 | 111 |
P value = 1 (Fisher's exact test), Q value = 1
Table S800. Gene #72: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
PHACTR1 MUTATED | 2 | 1 | 0 |
PHACTR1 WILD-TYPE | 277 | 180 | 108 |
P value = 0.343 (Fisher's exact test), Q value = 0.85
Table S801. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
DLG1 MUTATED | 0 | 2 | 1 | 0 | 2 | 2 | 0 | 0 |
DLG1 WILD-TYPE | 21 | 36 | 113 | 97 | 106 | 71 | 19 | 39 |
P value = 0.32 (Fisher's exact test), Q value = 0.84
Table S802. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
DLG1 MUTATED | 0 | 4 | 2 | 0 | 1 |
DLG1 WILD-TYPE | 96 | 148 | 114 | 89 | 55 |
P value = 0.427 (Fisher's exact test), Q value = 0.88
Table S803. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
DLG1 MUTATED | 1 | 6 | 2 | 4 | 0 |
DLG1 WILD-TYPE | 246 | 357 | 84 | 227 | 36 |
P value = 0.572 (Fisher's exact test), Q value = 0.97
Table S804. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
DLG1 MUTATED | 2 | 1 | 1 | 3 | 2 | 0 |
DLG1 WILD-TYPE | 118 | 83 | 188 | 98 | 114 | 54 |
P value = 0.445 (Fisher's exact test), Q value = 0.9
Table S805. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
DLG1 MUTATED | 1 | 3 | 3 |
DLG1 WILD-TYPE | 147 | 121 | 119 |
P value = 0.114 (Fisher's exact test), Q value = 0.54
Table S806. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
DLG1 MUTATED | 2 | 1 | 0 | 1 | 1 | 2 |
DLG1 WILD-TYPE | 57 | 47 | 90 | 52 | 112 | 29 |
P value = 0.125 (Fisher's exact test), Q value = 0.56
Table S807. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
DLG1 MUTATED | 4 | 7 | 2 |
DLG1 WILD-TYPE | 501 | 272 | 188 |
P value = 0.186 (Fisher's exact test), Q value = 0.69
Table S808. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
DLG1 MUTATED | 1 | 3 | 1 | 5 | 1 | 2 |
DLG1 WILD-TYPE | 262 | 148 | 78 | 256 | 167 | 50 |
P value = 0.673 (Fisher's exact test), Q value = 0.99
Table S809. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
DLG1 MUTATED | 4 | 1 | 2 | 5 |
DLG1 WILD-TYPE | 268 | 176 | 231 | 271 |
P value = 0.0038 (Fisher's exact test), Q value = 0.055
Table S810. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
DLG1 MUTATED | 5 | 6 | 0 | 0 | 1 | 0 |
DLG1 WILD-TYPE | 270 | 130 | 206 | 134 | 86 | 120 |
Figure S114. Get High-res Image Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D73V10.png)
P value = 0.67 (Fisher's exact test), Q value = 0.99
Table S811. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
DLG1 MUTATED | 1 | 3 | 1 | 1 | 2 |
DLG1 WILD-TYPE | 177 | 117 | 65 | 91 | 110 |
P value = 0.805 (Fisher's exact test), Q value = 1
Table S812. Gene #73: 'DLG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
DLG1 MUTATED | 4 | 2 | 2 |
DLG1 WILD-TYPE | 275 | 179 | 106 |
P value = 0.0137 (Fisher's exact test), Q value = 0.16
Table S813. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
GPRASP2 MUTATED | 0 | 0 | 0 | 0 | 1 | 5 | 0 | 0 |
GPRASP2 WILD-TYPE | 21 | 38 | 114 | 97 | 107 | 68 | 19 | 39 |
Figure S115. Get High-res Image Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D74V1.png)
P value = 0.0107 (Fisher's exact test), Q value = 0.13
Table S814. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
GPRASP2 MUTATED | 1 | 0 | 5 | 0 | 0 |
GPRASP2 WILD-TYPE | 95 | 152 | 111 | 89 | 56 |
Figure S116. Get High-res Image Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D74V2.png)
P value = 0.2 (Fisher's exact test), Q value = 0.71
Table S815. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
GPRASP2 MUTATED | 3 | 1 | 2 | 4 | 0 |
GPRASP2 WILD-TYPE | 244 | 362 | 84 | 227 | 36 |
P value = 0.482 (Fisher's exact test), Q value = 0.91
Table S816. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
GPRASP2 MUTATED | 0 | 1 | 2 | 2 | 0 | 0 |
GPRASP2 WILD-TYPE | 120 | 83 | 187 | 99 | 116 | 54 |
P value = 0.168 (Fisher's exact test), Q value = 0.65
Table S817. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
GPRASP2 MUTATED | 4 | 0 | 2 |
GPRASP2 WILD-TYPE | 144 | 124 | 120 |
P value = 0.538 (Fisher's exact test), Q value = 0.95
Table S818. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
GPRASP2 MUTATED | 0 | 0 | 2 | 0 | 3 | 1 |
GPRASP2 WILD-TYPE | 59 | 48 | 88 | 53 | 110 | 30 |
P value = 0.642 (Fisher's exact test), Q value = 0.99
Table S819. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
GPRASP2 MUTATED | 7 | 2 | 1 |
GPRASP2 WILD-TYPE | 498 | 277 | 189 |
P value = 0.253 (Fisher's exact test), Q value = 0.78
Table S820. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
GPRASP2 MUTATED | 1 | 4 | 0 | 3 | 1 | 1 |
GPRASP2 WILD-TYPE | 262 | 147 | 79 | 258 | 167 | 51 |
P value = 0.722 (Fisher's exact test), Q value = 1
Table S821. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
GPRASP2 MUTATED | 4 | 2 | 1 | 3 |
GPRASP2 WILD-TYPE | 268 | 175 | 232 | 273 |
P value = 0.627 (Fisher's exact test), Q value = 0.99
Table S822. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
GPRASP2 MUTATED | 5 | 0 | 2 | 2 | 0 | 1 |
GPRASP2 WILD-TYPE | 270 | 136 | 204 | 132 | 87 | 119 |
P value = 0.606 (Fisher's exact test), Q value = 0.98
Table S823. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
GPRASP2 MUTATED | 2 | 0 | 1 | 0 | 1 |
GPRASP2 WILD-TYPE | 176 | 120 | 65 | 92 | 111 |
P value = 0.672 (Fisher's exact test), Q value = 0.99
Table S824. Gene #74: 'GPRASP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
GPRASP2 MUTATED | 2 | 2 | 0 |
GPRASP2 WILD-TYPE | 277 | 179 | 108 |
P value = 0.461 (Fisher's exact test), Q value = 0.91
Table S825. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CCDC82 MUTATED | 0 | 0 | 3 | 0 | 0 | 1 | 0 | 0 |
CCDC82 WILD-TYPE | 21 | 38 | 111 | 97 | 108 | 72 | 19 | 39 |
P value = 0.0577 (Fisher's exact test), Q value = 0.41
Table S826. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CCDC82 MUTATED | 3 | 0 | 1 | 0 | 0 |
CCDC82 WILD-TYPE | 93 | 152 | 115 | 89 | 56 |
P value = 0.303 (Fisher's exact test), Q value = 0.83
Table S827. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CCDC82 MUTATED | 0 | 2 | 1 | 3 | 0 |
CCDC82 WILD-TYPE | 247 | 361 | 85 | 228 | 36 |
P value = 0.0365 (Fisher's exact test), Q value = 0.31
Table S828. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CCDC82 MUTATED | 4 | 0 | 0 |
CCDC82 WILD-TYPE | 144 | 124 | 122 |
Figure S117. Get High-res Image Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D75V5.png)
P value = 0.724 (Fisher's exact test), Q value = 1
Table S829. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CCDC82 MUTATED | 0 | 0 | 1 | 0 | 3 | 0 |
CCDC82 WILD-TYPE | 59 | 48 | 89 | 53 | 110 | 31 |
P value = 0.349 (Fisher's exact test), Q value = 0.85
Table S830. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CCDC82 MUTATED | 5 | 1 | 0 |
CCDC82 WILD-TYPE | 500 | 278 | 190 |
P value = 0.00243 (Fisher's exact test), Q value = 0.038
Table S831. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CCDC82 MUTATED | 0 | 5 | 0 | 0 | 1 | 0 |
CCDC82 WILD-TYPE | 263 | 146 | 79 | 261 | 167 | 52 |
Figure S118. Get High-res Image Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D75V8.png)
P value = 0.309 (Fisher's exact test), Q value = 0.83
Table S832. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CCDC82 MUTATED | 4 | 0 | 1 | 1 |
CCDC82 WILD-TYPE | 268 | 177 | 232 | 275 |
P value = 0.9 (Fisher's exact test), Q value = 1
Table S833. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CCDC82 MUTATED | 3 | 0 | 1 | 1 | 0 | 1 |
CCDC82 WILD-TYPE | 272 | 136 | 205 | 133 | 87 | 119 |
P value = 1 (Fisher's exact test), Q value = 1
Table S834. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CCDC82 MUTATED | 1 | 1 | 0 | 0 | 1 |
CCDC82 WILD-TYPE | 177 | 119 | 66 | 92 | 111 |
P value = 1 (Fisher's exact test), Q value = 1
Table S835. Gene #75: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CCDC82 MUTATED | 2 | 1 | 0 |
CCDC82 WILD-TYPE | 277 | 180 | 108 |
P value = 0.088 (Fisher's exact test), Q value = 0.48
Table S836. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
CCDC27 MUTATED | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 |
CCDC27 WILD-TYPE | 20 | 38 | 113 | 96 | 108 | 73 | 18 | 39 |
P value = 0.13 (Fisher's exact test), Q value = 0.58
Table S837. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
CCDC27 MUTATED | 0 | 0 | 3 | 1 | 0 |
CCDC27 WILD-TYPE | 96 | 152 | 113 | 88 | 56 |
P value = 0.0458 (Fisher's exact test), Q value = 0.36
Table S838. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
CCDC27 MUTATED | 2 | 0 | 0 | 5 | 0 |
CCDC27 WILD-TYPE | 245 | 363 | 86 | 226 | 36 |
Figure S119. Get High-res Image Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
![](D76V3.png)
P value = 0.0449 (Fisher's exact test), Q value = 0.36
Table S839. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
CCDC27 MUTATED | 0 | 0 | 0 | 2 | 3 | 0 |
CCDC27 WILD-TYPE | 120 | 84 | 189 | 99 | 113 | 54 |
Figure S120. Get High-res Image Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D76V4.png)
P value = 0.11 (Fisher's exact test), Q value = 0.54
Table S840. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
CCDC27 MUTATED | 3 | 0 | 0 |
CCDC27 WILD-TYPE | 145 | 124 | 122 |
P value = 0.941 (Fisher's exact test), Q value = 1
Table S841. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
CCDC27 MUTATED | 0 | 0 | 1 | 0 | 2 | 0 |
CCDC27 WILD-TYPE | 59 | 48 | 89 | 53 | 111 | 31 |
P value = 0.0329 (Fisher's exact test), Q value = 0.29
Table S842. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
CCDC27 MUTATED | 1 | 5 | 1 |
CCDC27 WILD-TYPE | 504 | 274 | 189 |
Figure S121. Get High-res Image Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D76V7.png)
P value = 0.264 (Fisher's exact test), Q value = 0.79
Table S843. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
CCDC27 MUTATED | 1 | 1 | 0 | 1 | 4 | 0 |
CCDC27 WILD-TYPE | 262 | 150 | 79 | 260 | 164 | 52 |
P value = 0.522 (Fisher's exact test), Q value = 0.95
Table S844. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
CCDC27 MUTATED | 4 | 1 | 1 | 1 |
CCDC27 WILD-TYPE | 268 | 176 | 232 | 275 |
P value = 0.0111 (Fisher's exact test), Q value = 0.13
Table S845. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
CCDC27 MUTATED | 1 | 2 | 0 | 0 | 0 | 4 |
CCDC27 WILD-TYPE | 274 | 134 | 206 | 134 | 87 | 116 |
Figure S122. Get High-res Image Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D76V10.png)
P value = 0.0542 (Fisher's exact test), Q value = 0.4
Table S846. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
CCDC27 MUTATED | 0 | 3 | 0 | 0 | 0 |
CCDC27 WILD-TYPE | 178 | 117 | 66 | 92 | 112 |
P value = 1 (Fisher's exact test), Q value = 1
Table S847. Gene #76: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
CCDC27 MUTATED | 2 | 1 | 0 |
CCDC27 WILD-TYPE | 277 | 180 | 108 |
P value = 0.906 (Fisher's exact test), Q value = 1
Table S848. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
RHOA MUTATED | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 |
RHOA WILD-TYPE | 21 | 38 | 113 | 96 | 108 | 72 | 19 | 39 |
P value = 0.587 (Fisher's exact test), Q value = 0.98
Table S849. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
RHOA MUTATED | 1 | 0 | 1 | 1 | 0 |
RHOA WILD-TYPE | 95 | 152 | 115 | 88 | 56 |
P value = 0.781 (Fisher's exact test), Q value = 1
Table S850. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
RHOA MUTATED | 1 | 3 | 1 | 1 | 0 |
RHOA WILD-TYPE | 246 | 360 | 85 | 230 | 36 |
P value = 0.938 (Fisher's exact test), Q value = 1
Table S851. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
RHOA MUTATED | 1 | 1 | 1 | 0 | 1 | 0 |
RHOA WILD-TYPE | 119 | 83 | 188 | 101 | 115 | 54 |
P value = 0.112 (Fisher's exact test), Q value = 0.54
Table S852. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
RHOA MUTATED | 3 | 0 | 0 |
RHOA WILD-TYPE | 145 | 124 | 122 |
P value = 0.603 (Fisher's exact test), Q value = 0.98
Table S853. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
RHOA MUTATED | 0 | 0 | 1 | 0 | 1 | 1 |
RHOA WILD-TYPE | 59 | 48 | 89 | 53 | 112 | 30 |
P value = 0.415 (Fisher's exact test), Q value = 0.88
Table S854. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
RHOA MUTATED | 3 | 3 | 0 |
RHOA WILD-TYPE | 502 | 276 | 190 |
P value = 0.259 (Fisher's exact test), Q value = 0.79
Table S855. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
RHOA MUTATED | 0 | 2 | 0 | 2 | 1 | 1 |
RHOA WILD-TYPE | 263 | 149 | 79 | 259 | 167 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
Table S856. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
RHOA MUTATED | 2 | 1 | 1 | 2 |
RHOA WILD-TYPE | 270 | 176 | 232 | 274 |
P value = 0.796 (Fisher's exact test), Q value = 1
Table S857. Gene #77: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
RHOA MUTATED | 3 | 0 | 2 | 0 | 0 | 1 |
RHOA WILD-TYPE | 272 | 136 | 204 | 134 | 87 | 119 |
P value = 0.919 (Fisher's exact test), Q value = 1
Table S858. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
MAMLD1 MUTATED | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 0 |
MAMLD1 WILD-TYPE | 21 | 38 | 112 | 95 | 106 | 73 | 19 | 39 |
P value = 0.433 (Fisher's exact test), Q value = 0.89
Table S859. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
MAMLD1 MUTATED | 2 | 2 | 0 | 2 | 0 |
MAMLD1 WILD-TYPE | 94 | 150 | 116 | 87 | 56 |
P value = 0.624 (Fisher's exact test), Q value = 0.99
Table S860. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
MAMLD1 MUTATED | 1 | 4 | 0 | 4 | 0 |
MAMLD1 WILD-TYPE | 246 | 359 | 86 | 227 | 36 |
P value = 0.731 (Fisher's exact test), Q value = 1
Table S861. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
MAMLD1 MUTATED | 0 | 0 | 2 | 1 | 2 | 0 |
MAMLD1 WILD-TYPE | 120 | 84 | 187 | 100 | 114 | 54 |
P value = 0.332 (Fisher's exact test), Q value = 0.84
Table S862. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
MAMLD1 MUTATED | 3 | 0 | 2 |
MAMLD1 WILD-TYPE | 145 | 124 | 120 |
P value = 0.937 (Fisher's exact test), Q value = 1
Table S863. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
MAMLD1 MUTATED | 1 | 0 | 2 | 0 | 2 | 0 |
MAMLD1 WILD-TYPE | 58 | 48 | 88 | 53 | 111 | 31 |
P value = 0.702 (Fisher's exact test), Q value = 1
Table S864. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
MAMLD1 MUTATED | 4 | 4 | 2 |
MAMLD1 WILD-TYPE | 501 | 275 | 188 |
P value = 0.653 (Fisher's exact test), Q value = 0.99
Table S865. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
MAMLD1 MUTATED | 2 | 1 | 0 | 3 | 4 | 0 |
MAMLD1 WILD-TYPE | 261 | 150 | 79 | 258 | 164 | 52 |
P value = 0.495 (Fisher's exact test), Q value = 0.93
Table S866. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
MAMLD1 MUTATED | 5 | 1 | 1 | 3 |
MAMLD1 WILD-TYPE | 267 | 176 | 232 | 273 |
P value = 0.157 (Fisher's exact test), Q value = 0.63
Table S867. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
MAMLD1 MUTATED | 2 | 0 | 2 | 2 | 0 | 4 |
MAMLD1 WILD-TYPE | 273 | 136 | 204 | 132 | 87 | 116 |
P value = 0.256 (Fisher's exact test), Q value = 0.79
Table S868. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 178 | 120 | 66 | 92 | 112 |
MAMLD1 MUTATED | 0 | 1 | 0 | 2 | 1 |
MAMLD1 WILD-TYPE | 178 | 119 | 66 | 90 | 111 |
P value = 1 (Fisher's exact test), Q value = 1
Table S869. Gene #78: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 279 | 181 | 108 |
MAMLD1 MUTATED | 2 | 1 | 1 |
MAMLD1 WILD-TYPE | 277 | 180 | 107 |
P value = 0.639 (Fisher's exact test), Q value = 0.99
Table S870. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 21 | 38 | 114 | 97 | 108 | 73 | 19 | 39 |
OR8D1 MUTATED | 0 | 0 | 0 | 2 | 2 | 0 | 0 | 0 |
OR8D1 WILD-TYPE | 21 | 38 | 114 | 95 | 106 | 73 | 19 | 39 |
P value = 0.00909 (Fisher's exact test), Q value = 0.12
Table S871. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 96 | 152 | 116 | 89 | 56 |
OR8D1 MUTATED | 0 | 0 | 0 | 2 | 2 |
OR8D1 WILD-TYPE | 96 | 152 | 116 | 87 | 54 |
Figure S123. Get High-res Image Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D79V2.png)
P value = 0.646 (Fisher's exact test), Q value = 0.99
Table S872. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 247 | 363 | 86 | 231 | 36 |
OR8D1 MUTATED | 0 | 3 | 0 | 1 | 0 |
OR8D1 WILD-TYPE | 247 | 360 | 86 | 230 | 36 |
P value = 0.873 (Fisher's exact test), Q value = 1
Table S873. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 120 | 84 | 189 | 101 | 116 | 54 |
OR8D1 MUTATED | 1 | 0 | 1 | 1 | 2 | 0 |
OR8D1 WILD-TYPE | 119 | 84 | 188 | 100 | 114 | 54 |
P value = 0.692 (Fisher's exact test), Q value = 1
Table S874. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 148 | 124 | 122 |
OR8D1 MUTATED | 1 | 1 | 2 |
OR8D1 WILD-TYPE | 147 | 123 | 120 |
P value = 0.793 (Fisher's exact test), Q value = 1
Table S875. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 90 | 53 | 113 | 31 |
OR8D1 MUTATED | 0 | 0 | 2 | 0 | 2 | 0 |
OR8D1 WILD-TYPE | 59 | 48 | 88 | 53 | 111 | 31 |
P value = 0.338 (Fisher's exact test), Q value = 0.85
Table S876. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 505 | 279 | 190 |
OR8D1 MUTATED | 2 | 3 | 0 |
OR8D1 WILD-TYPE | 503 | 276 | 190 |
P value = 0.182 (Fisher's exact test), Q value = 0.69
Table S877. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 263 | 151 | 79 | 261 | 168 | 52 |
OR8D1 MUTATED | 2 | 0 | 0 | 0 | 3 | 0 |
OR8D1 WILD-TYPE | 261 | 151 | 79 | 261 | 165 | 52 |
P value = 0.774 (Fisher's exact test), Q value = 1
Table S878. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 272 | 177 | 233 | 276 |
OR8D1 MUTATED | 1 | 0 | 2 | 1 |
OR8D1 WILD-TYPE | 271 | 177 | 231 | 275 |
P value = 0.593 (Fisher's exact test), Q value = 0.98
Table S879. Gene #79: 'OR8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 275 | 136 | 206 | 134 | 87 | 120 |
OR8D1 MUTATED | 1 | 0 | 1 | 0 | 1 | 1 |
OR8D1 WILD-TYPE | 274 | 136 | 205 | 134 | 86 | 119 |
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Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
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Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/20231616/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BRCA-TP/20125499/BRCA-TP.transferedmergedcluster.txt
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Number of patients = 977
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Number of significantly mutated genes = 79
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Number of Molecular subtypes = 12
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.