name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-A6-2671-01A-01D-1408-10	125	124	1	79	8.000000e-03	0	coding only	34834024	44	74	1.263133e-06	2.124360e-06
TCGA-A6-2672-01A-01W-0833-10	586	582	4	407	6.825939e-03	0	coding only	34834024	168	389	4.822871e-06	1.116724e-05
TCGA-A6-2674-01A-02W-0831-10	29	27	2	19	6.896552e-02	0	coding only	34834024	8	18	2.296605e-07	5.167362e-07
TCGA-A6-2676-01A-01W-0833-10	802	794	8	575	9.975062e-03	0	coding only	34834024	212	553	6.086004e-06	1.587528e-05
TCGA-A6-2677-01A-01W-0831-10	77	76	1	55	1.298701e-02	0	coding only	34834024	21	54	6.028589e-07	1.550208e-06
TCGA-A6-2678-01A-01W-0831-10	69	69	0	62	0	0	coding only	34834024	7	60	2.009530e-07	1.722454e-06
TCGA-A6-2683-01A-01W-0831-10	101	100	1	69	9.900990e-03	0	coding only	34834024	31	68	8.899345e-07	1.952114e-06
TCGA-A6-3807-01A-01W-0995-10	88	87	1	69	1.136364e-02	0	coding only	34834024	18	67	5.167362e-07	1.923407e-06
TCGA-A6-3808-01A-01W-0995-10	117	114	3	94	2.564103e-02	0	coding only	34834024	17	90	4.880286e-07	2.583681e-06
TCGA-A6-3809-01A-01W-0995-10	893	879	14	669	1.567749e-02	0	coding only	34834024	199	632	5.712805e-06	1.814318e-05
TCGA-A6-3810-01A-01W-0995-10	119	116	3	93	2.521008e-02	0	coding only	34834024	20	90	5.741513e-07	2.583681e-06
TCGA-A6-4105-01A-02D-1771-10	271	269	2	197	7.380074e-03	0	coding only	34834024	65	186	1.865992e-06	5.339607e-06
TCGA-A6-5656-01A-21D-1835-10	158	154	4	103	2.531646e-02	0	coding only	34834024	51	95	1.464086e-06	2.727219e-06
TCGA-A6-5657-01A-01D-1650-10	274	270	4	199	1.459854e-02	0	coding only	34834024	71	188	2.038237e-06	5.397022e-06
TCGA-A6-5659-01A-01D-1650-10	323	319	4	224	1.238390e-02	0	coding only	34834024	86	213	2.468851e-06	6.114711e-06
TCGA-A6-5660-01A-01D-1650-10	294	291	3	209	1.020408e-02	0	coding only	34834024	78	198	2.239190e-06	5.684098e-06
TCGA-A6-5661-01A-01D-1650-10	1504	1469	35	1117	2.327128e-02	0	coding only	34834024	331	1038	9.502204e-06	2.979845e-05
TCGA-A6-5662-01A-01D-1650-10	217	212	5	152	2.304147e-02	0	coding only	34834024	55	144	1.578916e-06	4.133889e-06
TCGA-A6-5664-01A-21D-1835-10	96	94	2	71	2.083333e-02	0	coding only	34834024	21	62	6.028589e-07	1.779869e-06
TCGA-A6-5665-01A-01D-1650-10	2251	2190	61	1724	2.709907e-02	0	coding only	34834024	436	1611	1.251650e-05	4.624789e-05
TCGA-A6-5666-01A-01D-1650-10	352	349	3	249	8.522727e-03	0	coding only	34834024	96	237	2.755926e-06	6.803693e-06
TCGA-A6-6137-01A-11D-1771-10	154	152	2	110	1.298701e-02	0	coding only	34834024	42	104	1.205718e-06	2.985587e-06
TCGA-A6-6138-01A-11D-1771-10	190	185	5	123	2.631579e-02	0	coding only	34834024	61	115	1.751161e-06	3.301370e-06
TCGA-A6-6141-01A-11D-1771-10	1172	1150	22	857	1.877133e-02	0	coding only	34834024	276	791	7.923288e-06	2.270768e-05
TCGA-A6-6142-01A-11D-1771-10	137	135	2	95	1.459854e-02	0	coding only	34834024	39	84	1.119595e-06	2.411435e-06
TCGA-A6-6648-01A-11D-1771-10	143	137	6	108	4.195804e-02	1	exome+100bp flanks	34834024	27	101	7.751042e-07	2.899464e-06
TCGA-A6-6649-01A-11D-1771-10	197	191	6	136	3.045685e-02	1	exome+100bp flanks	34834024	54	126	1.550208e-06	3.617153e-06
TCGA-A6-6651-01A-21D-1835-10	177	177	0	117	0	0	coding only	34834024	58	113	1.665039e-06	3.243955e-06
TCGA-A6-6652-01A-11D-1771-10	152	148	4	111	2.631579e-02	0	coding only	34834024	36	103	1.033472e-06	2.956879e-06
TCGA-A6-6653-01A-11D-1771-10	1270	1238	32	924	2.519685e-02	0	coding only	34834024	300	876	8.612269e-06	2.514783e-05
TCGA-A6-6654-01A-21D-1835-10	276	273	3	180	1.086957e-02	0	coding only	34834024	91	169	2.612388e-06	4.851578e-06
TCGA-A6-6780-01A-11D-1835-10	1202	1180	22	898	1.830283e-02	0	coding only	34834024	262	844	7.521382e-06	2.422918e-05
TCGA-A6-6781-01A-22D-1924-10	2023	1974	49	1491	2.422145e-02	0	coding only	34834024	452	1398	1.297582e-05	4.013318e-05
TCGA-A6-6782-01A-11D-1835-10	202	198	4	139	1.980198e-02	0	coding only	34834024	55	130	1.578916e-06	3.731983e-06
TCGA-AA-3489-01A-21D-1835-10	128	124	4	93	3.125000e-02	0	coding only	34834024	30	89	8.612269e-07	2.554973e-06
TCGA-AA-3492-01A-01D-1408-10	2241	2196	45	1644	2.008032e-02	0	coding only	34834024	518	1541	1.487052e-05	4.423836e-05
TCGA-AA-3496-01A-21D-1835-10	367	355	12	259	3.269755e-02	1	exome+100bp flanks	34834024	90	237	2.583681e-06	6.803693e-06
TCGA-AA-3502-01A-01D-1408-10	214	209	5	154	2.336449e-02	0	coding only	34834024	53	148	1.521501e-06	4.248720e-06
TCGA-AA-3510-01A-01D-1408-10	3083	3011	72	2405	2.335388e-02	0	coding only	34834024	566	2229	1.624848e-05	6.398916e-05
TCGA-AA-3511-01A-21D-1835-10	160	160	0	123	0	0	coding only	34834024	34	110	9.760572e-07	3.157832e-06
TCGA-AA-3514-01A-02W-0831-10	73	72	1	55	1.369863e-02	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-AA-3516-01A-02W-0833-10	915	898	17	669	1.857923e-02	0	coding only	34834024	217	640	6.229542e-06	1.837284e-05
TCGA-AA-3517-01A-01W-0831-10	37	37	0	27	0	0	coding only	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-AA-3518-01A-02W-0833-10	553	543	10	402	1.808318e-02	0	coding only	34834024	136	379	3.904229e-06	1.088017e-05
TCGA-AA-3519-01A-02W-0831-10	53	53	0	37	0	0	coding only	34834024	16	36	4.593210e-07	1.033472e-06
TCGA-AA-3520-01A-01W-0831-10	67	67	0	53	0	0	coding only	34834024	13	49	3.731983e-07	1.406671e-06
TCGA-AA-3521-01A-01W-0831-10	55	55	0	43	0	0	coding only	34834024	12	41	3.444908e-07	1.177010e-06
TCGA-AA-3522-01A-01W-0831-10	58	57	1	41	1.724138e-02	0	coding only	34834024	15	37	4.306135e-07	1.062180e-06
TCGA-AA-3524-01A-02W-0831-10	52	52	0	38	0	0	coding only	34834024	14	35	4.019059e-07	1.004765e-06
TCGA-AA-3525-01A-02W-0833-10	611	605	6	453	9.819967e-03	0	coding only	34834024	148	428	4.248720e-06	1.228684e-05
TCGA-AA-3526-01A-02W-0831-10	66	66	0	44	0	0	coding only	34834024	22	43	6.315664e-07	1.234425e-06
TCGA-AA-3527-01A-01W-0831-10	89	89	0	65	0	0	coding only	34834024	24	57	6.889816e-07	1.636331e-06
TCGA-AA-3529-01A-02W-0831-10	62	62	0	43	0	0	coding only	34834024	19	43	5.454437e-07	1.234425e-06
TCGA-AA-3530-01A-01W-0995-10	83	82	1	65	1.204819e-02	0	coding only	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-AA-3531-01A-01W-0831-10	72	72	0	56	0	0	coding only	34834024	15	56	4.306135e-07	1.607624e-06
TCGA-AA-3532-01A-01W-0831-10	41	41	0	32	0	0	coding only	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-AA-3534-01A-01W-0831-10	64	64	0	51	0	0	coding only	34834024	12	46	3.444908e-07	1.320548e-06
TCGA-AA-3538-01A-01W-0831-10	46	45	1	31	2.173913e-02	0	coding only	34834024	14	31	4.019059e-07	8.899345e-07
TCGA-AA-3542-01A-02W-0831-10	203	202	1	163	4.926108e-03	0	coding only	34834024	39	157	1.119595e-06	4.507088e-06
TCGA-AA-3543-01A-01W-0833-10	235	232	3	190	1.276596e-02	0	coding only	34834024	39	182	1.119595e-06	5.224777e-06
TCGA-AA-3544-01A-01W-0831-10	66	65	1	45	1.515152e-02	0	coding only	34834024	20	42	5.741513e-07	1.205718e-06
TCGA-AA-3548-01A-01W-0831-10	40	40	0	31	0	0	coding only	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-AA-3549-01A-02W-0831-10	63	63	0	49	0	0	coding only	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-AA-3552-01A-01W-0831-10	61	61	0	44	0	0	coding only	34834024	16	43	4.593210e-07	1.234425e-06
TCGA-AA-3553-01A-01W-0831-10	34	34	0	27	0	0	coding only	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-AA-3554-01A-01W-0833-10	324	318	6	236	1.851852e-02	0	coding only	34834024	78	225	2.239190e-06	6.459202e-06
TCGA-AA-3555-01A-01W-0831-10	871	864	7	718	8.036739e-03	0	coding only	34834024	134	691	3.846814e-06	1.983693e-05
TCGA-AA-3556-01A-01W-0831-10	43	43	0	29	0	0	coding only	34834024	13	27	3.731983e-07	7.751042e-07
TCGA-AA-3558-01A-01W-0831-10	136	135	1	94	7.352941e-03	0	coding only	34834024	39	91	1.119595e-06	2.612388e-06
TCGA-AA-3560-01A-01W-0831-10	58	58	0	46	0	0	coding only	34834024	12	39	3.444908e-07	1.119595e-06
TCGA-AA-3561-01A-01W-0831-10	59	59	0	37	0	0	coding only	34834024	22	35	6.315664e-07	1.004765e-06
TCGA-AA-3562-01A-02W-0831-10	48	47	1	31	2.083333e-02	0	coding only	34834024	16	30	4.593210e-07	8.612269e-07
TCGA-AA-3655-01A-02D-1719-10	256	251	5	179	1.953125e-02	0	coding only	34834024	72	172	2.066945e-06	4.937701e-06
TCGA-AA-3660-01A-01D-1719-10	607	597	10	392	1.647446e-02	0	coding only	34834024	193	365	5.540560e-06	1.047826e-05
TCGA-AA-3662-01A-01D-1719-10	402	398	4	294	9.950249e-03	0	coding only	34834024	102	283	2.928172e-06	8.124241e-06
TCGA-AA-3663-01A-01D-1719-10	2404	2358	46	1821	1.913478e-02	0	coding only	34834024	504	1705	1.446861e-05	4.894640e-05
TCGA-AA-3664-01A-01W-0900-09	167	164	3	123	1.796407e-02	0	coding only	34834024	38	114	1.090887e-06	3.272662e-06
TCGA-AA-3666-01A-02W-0900-09	152	152	0	126	0	0	coding only	34834024	26	120	7.463967e-07	3.444908e-06
TCGA-AA-3667-01A-01W-0900-09	73	72	1	59	1.369863e-02	0	coding only	34834024	11	55	3.157832e-07	1.578916e-06
TCGA-AA-3672-01A-01W-0900-09	1809	1761	48	1315	2.653400e-02	0	coding only	34834024	428	1252	1.228684e-05	3.594187e-05
TCGA-AA-3673-01A-01W-0900-09	81	80	1	65	1.234568e-02	0	coding only	34834024	15	59	4.306135e-07	1.693746e-06
TCGA-AA-3678-01A-01W-0900-09	74	72	2	57	2.702703e-02	0	coding only	34834024	15	53	4.306135e-07	1.521501e-06
TCGA-AA-3679-01A-02W-0900-09	78	77	1	55	1.282051e-02	0	coding only	34834024	20	53	5.741513e-07	1.521501e-06
TCGA-AA-3680-01A-01W-0900-09	118	114	4	88	3.389831e-02	0	coding only	34834024	22	82	6.315664e-07	2.354020e-06
TCGA-AA-3681-01A-01W-0900-09	123	117	6	93	4.878049e-02	1	exome+100bp flanks	34834024	22	86	6.315664e-07	2.468851e-06
TCGA-AA-3684-01A-02W-0900-09	125	125	0	93	0	0	coding only	34834024	32	92	9.186421e-07	2.641096e-06
TCGA-AA-3685-01A-02W-0900-09	80	78	2	63	2.500000e-02	0	coding only	34834024	15	59	4.306135e-07	1.693746e-06
TCGA-AA-3688-01A-01W-0900-09	62	62	0	49	0	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-AA-3692-01A-01W-0900-09	64	64	0	52	0	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-AA-3693-01A-01W-0900-09	143	140	3	106	2.097902e-02	0	coding only	34834024	34	99	9.760572e-07	2.842049e-06
TCGA-AA-3695-01A-01W-0900-09	174	172	2	129	1.149425e-02	0	coding only	34834024	42	123	1.205718e-06	3.531030e-06
TCGA-AA-3696-01A-01W-0900-09	97	96	1	73	1.030928e-02	0	coding only	34834024	20	71	5.741513e-07	2.038237e-06
TCGA-AA-3697-01A-01D-1719-10	484	476	8	342	1.652893e-02	0	coding only	34834024	129	325	3.703276e-06	9.329959e-06
TCGA-AA-3710-01A-01W-0995-10	1335	1314	21	949	1.573034e-02	0	coding only	34834024	352	891	1.010506e-05	2.557844e-05
TCGA-AA-3712-01A-21D-1719-10	434	429	5	303	1.152074e-02	0	coding only	34834024	120	286	3.444908e-06	8.210364e-06
TCGA-AA-3713-01A-21D-1719-10	1590	1556	34	1214	2.138365e-02	0	coding only	34834024	325	1139	9.329959e-06	3.269792e-05
TCGA-AA-3715-01A-01W-0900-09	1942	1914	28	1435	1.441813e-02	0	coding only	34834024	451	1364	1.294711e-05	3.915712e-05
TCGA-AA-3811-01A-01W-0995-10	1089	1068	21	786	1.928375e-02	0	coding only	34834024	261	750	7.492674e-06	2.153067e-05
TCGA-AA-3812-01A-01W-0900-09	114	113	1	79	8.771930e-03	0	coding only	34834024	34	76	9.760572e-07	2.181775e-06
TCGA-AA-3814-01A-01W-0900-09	109	105	4	74	3.669725e-02	0	coding only	34834024	29	71	8.325194e-07	2.038237e-06
TCGA-AA-3815-01A-01W-0995-10	1262	1231	31	942	2.456418e-02	0	coding only	34834024	268	876	7.693627e-06	2.514783e-05
TCGA-AA-3818-01A-01W-0900-09	139	138	1	101	7.194245e-03	0	coding only	34834024	36	91	1.033472e-06	2.612388e-06
TCGA-AA-3819-01A-01W-0900-09	177	173	4	135	2.259887e-02	0	coding only	34834024	37	126	1.062180e-06	3.617153e-06
TCGA-AA-3821-01A-01W-0995-10	813	801	12	604	1.476015e-02	0	coding only	34834024	187	574	5.368315e-06	1.647814e-05
TCGA-AA-3831-01A-01W-0900-09	114	111	3	91	2.631579e-02	0	coding only	34834024	20	86	5.741513e-07	2.468851e-06
TCGA-AA-3833-01A-01W-0900-09	534	524	10	369	1.872659e-02	0	coding only	34834024	147	354	4.220012e-06	1.016248e-05
TCGA-AA-3837-01A-01W-0900-09	148	148	0	103	0	0	coding only	34834024	44	96	1.263133e-06	2.755926e-06
TCGA-AA-3842-01A-01W-0995-10	83	82	1	51	1.204819e-02	0	coding only	34834024	30	49	8.612269e-07	1.406671e-06
TCGA-AA-3844-01A-01W-0995-10	112	112	0	81	0	0	coding only	34834024	31	76	8.899345e-07	2.181775e-06
TCGA-AA-3845-01A-01W-0995-10	881	866	15	644	1.702611e-02	0	coding only	34834024	208	615	5.971173e-06	1.765515e-05
TCGA-AA-3846-01A-01W-0995-10	94	88	6	65	6.382979e-02	0	coding only	34834024	23	63	6.602740e-07	1.808577e-06
TCGA-AA-3848-01A-01W-0900-09	152	152	0	105	0	0	coding only	34834024	46	102	1.320548e-06	2.928172e-06
TCGA-AA-3850-01A-01W-0995-10	111	110	1	75	9.009009e-03	0	coding only	34834024	34	71	9.760572e-07	2.038237e-06
TCGA-AA-3851-01A-01W-0995-10	96	95	1	67	1.041667e-02	0	coding only	34834024	26	63	7.463967e-07	1.808577e-06
TCGA-AA-3852-01A-01W-0900-09	139	139	0	107	0	0	coding only	34834024	29	100	8.325194e-07	2.870756e-06
TCGA-AA-3854-01A-01W-0900-09	146	142	4	104	2.739726e-02	0	coding only	34834024	36	100	1.033472e-06	2.870756e-06
TCGA-AA-3855-01A-01W-0995-10	134	131	3	98	2.238806e-02	0	coding only	34834024	32	90	9.186421e-07	2.583681e-06
TCGA-AA-3856-01A-01W-0900-09	62	62	0	48	0	0	coding only	34834024	14	45	4.019059e-07	1.291840e-06
TCGA-AA-3858-01A-01W-0900-09	63	60	3	42	4.761905e-02	0	coding only	34834024	17	41	4.880286e-07	1.177010e-06
TCGA-AA-3860-01A-02W-0900-09	50	47	3	33	6.000000e-02	0	coding only	34834024	12	32	3.444908e-07	9.186421e-07
TCGA-AA-3861-01A-01W-0995-10	261	254	7	170	2.681992e-02	0	coding only	34834024	79	163	2.267898e-06	4.679333e-06
TCGA-AA-3864-01A-01W-0995-10	2740	2696	44	1909	1.605839e-02	0	coding only	34834024	755	1808	2.167421e-05	5.190328e-05
TCGA-AA-3866-01A-01W-0995-10	122	120	2	86	1.639344e-02	0	coding only	34834024	32	82	9.186421e-07	2.354020e-06
TCGA-AA-3867-01A-01W-0995-10	87	86	1	69	1.149425e-02	0	coding only	34834024	16	66	4.593210e-07	1.894699e-06
TCGA-AA-3869-01A-01W-0995-10	80	77	3	53	3.750000e-02	0	coding only	34834024	21	47	6.028589e-07	1.349256e-06
TCGA-AA-3870-01A-01W-0995-10	123	121	2	92	1.626016e-02	0	coding only	34834024	27	89	7.751042e-07	2.554973e-06
TCGA-AA-3872-01A-01W-0995-10	62	61	1	42	1.612903e-02	0	coding only	34834024	17	41	4.880286e-07	1.177010e-06
TCGA-AA-3875-01A-01W-0900-09	125	125	0	99	0	0	coding only	34834024	24	97	6.889816e-07	2.784634e-06
TCGA-AA-3877-01A-01W-0995-10	1087	1071	16	753	1.471941e-02	0	coding only	34834024	302	721	8.669685e-06	2.069815e-05
TCGA-AA-3930-01A-01W-0995-10	163	161	2	111	1.226994e-02	0	coding only	34834024	45	107	1.291840e-06	3.071709e-06
TCGA-AA-3939-01A-01W-0995-10	120	120	0	97	0	0	coding only	34834024	21	93	6.028589e-07	2.669804e-06
TCGA-AA-3941-01A-01W-0995-10	111	111	0	92	0	0	coding only	34834024	19	89	5.454437e-07	2.554973e-06
TCGA-AA-3947-01A-01W-0995-10	1619	1580	39	1178	2.408894e-02	0	coding only	34834024	375	1114	1.076534e-05	3.198023e-05
TCGA-AA-3949-01A-01W-0995-10	897	885	12	640	1.337793e-02	0	coding only	34834024	237	613	6.803693e-06	1.759774e-05
TCGA-AA-3950-01A-02W-0995-10	1375	1353	22	1008	1.600000e-02	0	coding only	34834024	320	949	9.186421e-06	2.724348e-05
TCGA-AA-3952-01A-01W-0995-10	85	84	1	61	1.176471e-02	0	coding only	34834024	21	58	6.028589e-07	1.665039e-06
TCGA-AA-3955-01A-02W-0995-10	124	122	2	96	1.612903e-02	0	coding only	34834024	25	91	7.176891e-07	2.612388e-06
TCGA-AA-3956-01A-02W-0995-10	136	133	3	105	2.205882e-02	0	coding only	34834024	27	101	7.751042e-07	2.899464e-06
TCGA-AA-3966-01A-01W-1073-09	1156	1131	25	857	2.162630e-02	0	coding only	34834024	267	807	7.664920e-06	2.316700e-05
TCGA-AA-3968-01A-01W-0995-10	241	237	4	184	1.659751e-02	0	coding only	34834024	49	177	1.406671e-06	5.081239e-06
TCGA-AA-3971-01A-01W-0995-10	72	72	0	56	0	0	coding only	34834024	14	50	4.019059e-07	1.435378e-06
TCGA-AA-3972-01A-01W-0995-10	115	113	2	78	1.739130e-02	0	coding only	34834024	34	75	9.760572e-07	2.153067e-06
TCGA-AA-3973-01A-01W-0995-10	82	81	1	64	1.219512e-02	0	coding only	34834024	16	62	4.593210e-07	1.779869e-06
TCGA-AA-3975-01A-01W-0995-10	122	120	2	94	1.639344e-02	0	coding only	34834024	24	92	6.889816e-07	2.641096e-06
TCGA-AA-3976-01A-01W-0995-10	95	90	5	63	5.263158e-02	0	coding only	34834024	26	60	7.463967e-07	1.722454e-06
TCGA-AA-3977-01A-01W-0995-10	3658	3602	56	2898	1.530891e-02	0	coding only	34834024	667	2762	1.914795e-05	7.929029e-05
TCGA-AA-3979-01A-01W-0995-10	150	146	4	114	2.666667e-02	0	coding only	34834024	30	107	8.612269e-07	3.071709e-06
TCGA-AA-3980-01A-02W-0995-10	91	90	1	76	1.098901e-02	0	coding only	34834024	13	73	3.731983e-07	2.095652e-06
TCGA-AA-3982-01A-02W-0995-10	106	104	2	80	1.886792e-02	0	coding only	34834024	19	78	5.454437e-07	2.239190e-06
TCGA-AA-3984-01A-02W-0995-10	4039	3971	68	3162	1.683585e-02	0	coding only	34834024	760	3008	2.181775e-05	8.635235e-05
TCGA-AA-3986-01A-02W-0995-10	87	83	4	57	4.597701e-02	0	coding only	34834024	23	57	6.602740e-07	1.636331e-06
TCGA-AA-3989-01A-01W-0995-10	122	118	4	91	3.278689e-02	0	coding only	34834024	27	85	7.751042e-07	2.440143e-06
TCGA-AA-3994-01A-01W-1073-09	192	188	4	138	2.083333e-02	0	coding only	34834024	46	129	1.320548e-06	3.703276e-06
TCGA-AA-A004-01A-01W-A00E-09	66	66	0	53	0	0	coding only	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-AA-A00A-01A-01W-A005-10	430	424	6	315	1.395349e-02	0	coding only	34834024	105	297	3.014294e-06	8.526147e-06
TCGA-AA-A00D-01A-01W-A005-10	77	77	0	55	0	0	coding only	34834024	21	54	6.028589e-07	1.550208e-06
TCGA-AA-A00E-01A-01W-A005-10	636	630	6	458	9.433962e-03	0	coding only	34834024	160	437	4.593210e-06	1.254521e-05
TCGA-AA-A00F-01A-01W-A005-10	46	46	0	32	0	0	coding only	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-AA-A00J-01A-02W-A005-10	1039	1030	9	779	8.662175e-03	0	coding only	34834024	232	752	6.660155e-06	2.158809e-05
TCGA-AA-A00K-01A-02W-A005-10	148	148	0	96	0	0	coding only	34834024	51	91	1.464086e-06	2.612388e-06
TCGA-AA-A00L-01A-01W-A005-10	56	56	0	46	0	0	coding only	34834024	10	45	2.870756e-07	1.291840e-06
TCGA-AA-A00N-01A-02W-A00E-09	4445	4378	67	3465	1.507312e-02	0	coding only	34834024	867	3287	2.488946e-05	9.436177e-05
TCGA-AA-A00O-01A-02W-A00E-09	82	82	0	60	0	0	coding only	34834024	21	56	6.028589e-07	1.607624e-06
TCGA-AA-A00Q-01A-01W-A005-10	36	36	0	24	0	0	coding only	34834024	12	23	3.444908e-07	6.602740e-07
TCGA-AA-A00R-01A-01W-A005-10	431	427	4	298	9.280742e-03	0	coding only	34834024	122	287	3.502323e-06	8.239071e-06
TCGA-AA-A00U-01A-01W-A005-10	85	85	0	63	0	0	coding only	34834024	20	62	5.741513e-07	1.779869e-06
TCGA-AA-A00W-01A-01W-A005-10	27	27	0	23	0	0	coding only	34834024	4	21	1.148303e-07	6.028589e-07
TCGA-AA-A00Z-01A-01W-A005-10	42	42	0	28	0	0	coding only	34834024	13	27	3.731983e-07	7.751042e-07
TCGA-AA-A010-01A-01W-A00E-09	7750	7566	184	6037	2.374194e-02	0	coding only	34834024	1456	5710	4.179821e-05	1.639202e-04
TCGA-AA-A017-01A-01W-A00E-09	61	61	0	48	0	0	coding only	34834024	13	48	3.731983e-07	1.377963e-06
TCGA-AA-A01D-01A-01W-A00E-09	163	161	2	119	1.226994e-02	0	coding only	34834024	38	111	1.090887e-06	3.186540e-06
TCGA-AA-A01F-01A-01W-A005-10	61	61	0	48	0	0	coding only	34834024	13	46	3.731983e-07	1.320548e-06
TCGA-AA-A01G-01A-01W-A005-10	73	73	0	50	0	0	coding only	34834024	23	49	6.602740e-07	1.406671e-06
TCGA-AA-A01I-01A-02W-A00E-09	98	95	3	80	3.061224e-02	0	coding only	34834024	14	76	4.019059e-07	2.181775e-06
TCGA-AA-A01K-01A-01W-A00E-09	159	156	3	115	1.886792e-02	0	coding only	34834024	39	110	1.119595e-06	3.157832e-06
TCGA-AA-A01P-01A-21W-A096-10	514	509	5	381	9.727626e-03	0	coding only	34834024	124	360	3.559738e-06	1.033472e-05
TCGA-AA-A01Q-01A-01W-A005-10	773	768	5	571	6.468305e-03	0	coding only	34834024	190	540	5.454437e-06	1.550208e-05
TCGA-AA-A01R-01A-21W-A096-10	1727	1701	26	1214	1.505501e-02	0	coding only	34834024	461	1156	1.323419e-05	3.318594e-05
TCGA-AA-A01S-01A-21W-A096-10	63	63	0	44	0	0	coding only	34834024	18	41	5.167362e-07	1.177010e-06
TCGA-AA-A01T-01A-21W-A096-10	95	92	3	73	3.157895e-02	0	coding only	34834024	19	71	5.454437e-07	2.038237e-06
TCGA-AA-A01V-01A-23W-A096-10	133	130	3	90	2.255639e-02	0	coding only	34834024	37	88	1.062180e-06	2.526266e-06
TCGA-AA-A01X-01A-21W-A096-10	65	65	0	47	0	0	coding only	34834024	17	45	4.880286e-07	1.291840e-06
TCGA-AA-A01Z-01A-11W-A096-10	106	105	1	76	9.433962e-03	0	coding only	34834024	28	73	8.038118e-07	2.095652e-06
TCGA-AA-A022-01A-21W-A096-10	1279	1253	26	890	2.032838e-02	0	coding only	34834024	345	842	9.904110e-06	2.417177e-05
TCGA-AA-A024-01A-02W-A00E-09	82	81	1	58	1.219512e-02	0	coding only	34834024	20	57	5.741513e-07	1.636331e-06
TCGA-AA-A029-01A-01W-A00E-09	108	106	2	78	1.851852e-02	0	coding only	34834024	27	74	7.751042e-07	2.124360e-06
TCGA-AA-A02F-01A-01W-A00E-09	64	63	1	45	1.562500e-02	0	coding only	34834024	17	44	4.880286e-07	1.263133e-06
TCGA-AA-A02H-01A-01W-A00E-09	74	74	0	56	0	0	coding only	34834024	17	53	4.880286e-07	1.521501e-06
TCGA-AA-A02J-01A-01W-A00E-09	135	134	1	101	7.407407e-03	0	coding only	34834024	32	99	9.186421e-07	2.842049e-06
TCGA-AA-A02K-01A-21W-A096-10	209	205	4	150	1.913876e-02	0	coding only	34834024	53	144	1.521501e-06	4.133889e-06
TCGA-AA-A02O-01A-21W-A096-10	164	161	3	133	1.829268e-02	0	coding only	34834024	28	130	8.038118e-07	3.731983e-06
TCGA-AA-A02W-01A-01W-A00E-09	114	114	0	83	0	0	coding only	34834024	30	75	8.612269e-07	2.153067e-06
TCGA-AA-A02Y-01A-43W-A096-10	124	120	4	101	3.225806e-02	0	coding only	34834024	19	96	5.454437e-07	2.755926e-06
TCGA-AA-A03F-01A-11W-A096-10	133	132	1	102	7.518797e-03	0	coding only	34834024	28	99	8.038118e-07	2.842049e-06
TCGA-AA-A03J-01A-21W-A096-10	92	88	4	60	4.347826e-02	0	coding only	34834024	28	58	8.038118e-07	1.665039e-06
TCGA-AD-5900-01A-11D-1650-10	1680	1650	30	1262	1.785714e-02	0	coding only	34834024	368	1182	1.056438e-05	3.393234e-05
TCGA-AD-6548-01A-11D-1835-10	147	145	2	95	1.360544e-02	0	coding only	34834024	47	93	1.349256e-06	2.669804e-06
TCGA-AD-6888-01A-11D-1924-10	140	138	2	106	1.428571e-02	0	coding only	34834024	29	101	8.325194e-07	2.899464e-06
TCGA-AD-6889-01A-11D-1924-10	2079	2037	42	1558	2.020202e-02	0	coding only	34834024	453	1452	1.300453e-05	4.168338e-05
TCGA-AD-6890-01A-11D-1924-10	173	171	2	130	1.156069e-02	0	coding only	34834024	36	122	1.033472e-06	3.502323e-06
TCGA-AD-6895-01A-11D-1924-10	1680	1642	38	1179	2.261905e-02	0	coding only	34834024	441	1109	1.266004e-05	3.183669e-05
TCGA-AD-6899-01A-11D-1924-10	202	198	4	144	1.980198e-02	0	coding only	34834024	52	134	1.492793e-06	3.846814e-06
TCGA-AD-6901-01A-11D-1924-10	315	309	6	229	1.904762e-02	0	coding only	34834024	72	217	2.066945e-06	6.229542e-06
TCGA-AD-6963-01A-11D-1924-10	168	166	2	120	1.190476e-02	0	coding only	34834024	46	109	1.320548e-06	3.129125e-06
TCGA-AD-6964-01A-11D-1924-10	1396	1373	23	1041	1.647564e-02	0	coding only	34834024	311	979	8.928053e-06	2.810471e-05
TCGA-AD-6965-01A-11D-1924-10	164	161	3	111	1.829268e-02	0	coding only	34834024	48	107	1.377963e-06	3.071709e-06
TCGA-AU-3779-01A-01D-1719-10	392	389	3	275	7.653061e-03	0	coding only	34834024	108	263	3.100417e-06	7.550090e-06
TCGA-AU-6004-01A-11D-1719-10	1450	1431	19	1092	1.310345e-02	0	coding only	34834024	320	1033	9.186421e-06	2.965491e-05
TCGA-AY-4070-01A-01W-1073-09	124	122	2	86	1.612903e-02	0	coding only	34834024	36	81	1.033472e-06	2.325313e-06
TCGA-AY-4071-01A-01W-1073-09	111	108	3	81	2.702703e-02	0	coding only	34834024	25	79	7.176891e-07	2.267898e-06
TCGA-AY-5543-01A-01D-1650-10	395	392	3	266	7.594937e-03	0	coding only	34834024	119	252	3.416200e-06	7.234306e-06
TCGA-AY-6196-01A-11D-1719-10	532	525	7	393	1.315789e-02	0	coding only	34834024	123	374	3.531030e-06	1.073663e-05
TCGA-AY-6197-01A-11D-1719-10	1508	1476	32	1104	2.122016e-02	0	coding only	34834024	351	1034	1.007636e-05	2.968362e-05
TCGA-AY-6386-01A-21D-1719-10	470	464	6	316	1.276596e-02	0	coding only	34834024	143	296	4.105182e-06	8.497439e-06
TCGA-AZ-4315-01A-01D-1408-10	6357	6216	141	4881	2.218027e-02	0	coding only	34834024	1242	4547	3.565480e-05	1.305333e-04
TCGA-AZ-4323-01A-21D-1835-10	83	82	1	62	1.204819e-02	0	coding only	34834024	19	60	5.454437e-07	1.722454e-06
TCGA-AZ-4616-01A-21D-1835-10	107	105	2	77	1.869159e-02	0	coding only	34834024	27	74	7.751042e-07	2.124360e-06
TCGA-AZ-4681-01A-01D-1408-10	159	156	3	109	1.886792e-02	0	coding only	34834024	43	96	1.234425e-06	2.755926e-06
TCGA-AZ-4682-01B-01D-1408-10	127	122	5	82	3.937008e-02	1	exome+100bp flanks	34834024	38	73	1.090887e-06	2.095652e-06
TCGA-AZ-5403-01A-01D-1650-10	286	284	2	188	6.993007e-03	0	coding only	34834024	94	179	2.698511e-06	5.138654e-06
TCGA-AZ-5407-01A-01D-1719-10	395	390	5	287	1.265823e-02	0	coding only	34834024	100	274	2.870756e-06	7.865873e-06
TCGA-AZ-6598-01A-11D-1771-10	3063	2996	67	2295	2.187398e-02	0	coding only	34834024	656	2145	1.883216e-05	6.157773e-05
TCGA-AZ-6599-01A-11D-1771-10	794	781	13	520	1.637280e-02	0	coding only	34834024	245	501	7.033353e-06	1.438249e-05
TCGA-AZ-6600-01A-11D-1771-10	459	456	3	326	6.535948e-03	0	coding only	34834024	128	313	3.674568e-06	8.985468e-06
TCGA-AZ-6601-01A-11D-1771-10	2312	2266	46	1619	1.989619e-02	0	coding only	34834024	611	1536	1.754032e-05	4.409482e-05
TCGA-AZ-6603-01A-11D-1835-10	224	222	2	165	8.928571e-03	0	coding only	34834024	53	160	1.521501e-06	4.593210e-06
TCGA-AZ-6605-01A-11D-1835-10	194	192	2	138	1.030928e-02	0	coding only	34834024	53	135	1.521501e-06	3.875521e-06
TCGA-AZ-6606-01A-11D-1835-10	194	191	3	137	1.546392e-02	0	coding only	34834024	52	133	1.492793e-06	3.818106e-06
TCGA-AZ-6607-01A-11D-1835-10	146	143	3	103	2.054795e-02	0	coding only	34834024	39	99	1.119595e-06	2.842049e-06
TCGA-AZ-6608-01A-11D-1835-10	367	362	5	251	1.362398e-02	0	coding only	34834024	107	241	3.071709e-06	6.918523e-06
TCGA-CA-5254-01A-21D-1835-10	208	203	5	152	2.403846e-02	0	coding only	34834024	47	142	1.349256e-06	4.076474e-06
TCGA-CA-5255-01A-11D-1835-10	81	81	0	62	0	0	coding only	34834024	18	59	5.167362e-07	1.693746e-06
TCGA-CA-5796-01A-01D-1650-10	126	124	2	87	1.587302e-02	0	coding only	34834024	33	84	9.473496e-07	2.411435e-06
TCGA-CA-5797-01A-01D-1650-10	156	153	3	108	1.923077e-02	0	coding only	34834024	39	102	1.119595e-06	2.928172e-06
TCGA-CA-6715-01A-21D-1835-10	176	174	2	125	1.136364e-02	0	coding only	34834024	45	119	1.291840e-06	3.416200e-06
TCGA-CA-6716-01A-11D-1835-10	293	287	6	202	2.047782e-02	0	coding only	34834024	78	192	2.239190e-06	5.511852e-06
TCGA-CA-6717-01A-11D-1835-10	8485	8321	164	6754	1.932823e-02	0	coding only	34834024	1469	6257	4.217141e-05	1.796232e-04
TCGA-CA-6718-01A-11D-1835-10	3150	3085	65	2522	2.063492e-02	0	coding only	34834024	523	2330	1.501406e-05	6.688863e-05
TCGA-CA-6719-01A-11D-1835-10	194	192	2	147	1.030928e-02	0	coding only	34834024	42	133	1.205718e-06	3.818106e-06
TCGA-CK-4947-01B-11D-1650-10	246	241	5	169	2.032520e-02	0	coding only	34834024	69	161	1.980822e-06	4.621918e-06
TCGA-CK-4948-01B-11D-1650-10	264	258	6	183	2.272727e-02	0	coding only	34834024	75	175	2.153067e-06	5.023824e-06
TCGA-CK-4950-01A-01D-1719-10	456	445	11	317	2.412281e-02	0	coding only	34834024	119	300	3.416200e-06	8.612269e-06
TCGA-CK-4952-01A-01D-1719-10	669	660	9	475	1.345291e-02	0	coding only	34834024	175	458	5.023824e-06	1.314806e-05
TCGA-CK-5912-01A-11D-1650-10	175	173	2	119	1.142857e-02	0	coding only	34834024	54	113	1.550208e-06	3.243955e-06
TCGA-CK-5913-01A-11D-1650-10	999	974	25	737	2.502503e-02	0	coding only	34834024	216	682	6.200834e-06	1.957856e-05
TCGA-CK-5914-01A-11D-1650-10	284	282	2	217	7.042254e-03	0	coding only	34834024	62	204	1.779869e-06	5.856343e-06
TCGA-CK-5915-01A-11D-1650-10	278	273	5	192	1.798561e-02	0	coding only	34834024	75	183	2.153067e-06	5.253484e-06
TCGA-CK-5916-01A-11D-1650-10	940	914	26	755	2.765957e-02	0	coding only	34834024	146	709	4.191304e-06	2.035366e-05
TCGA-CK-6746-01A-11D-1835-10	1438	1412	26	1098	1.808067e-02	0	coding only	34834024	297	1023	8.526147e-06	2.936784e-05
TCGA-CK-6747-01A-11D-1835-10	269	264	5	204	1.858736e-02	0	coding only	34834024	58	185	1.665039e-06	5.310899e-06
TCGA-CK-6748-01A-11D-1835-10	136	133	3	94	2.205882e-02	0	coding only	34834024	33	89	9.473496e-07	2.554973e-06
TCGA-CK-6751-01A-11D-1835-10	287	284	3	208	1.045296e-02	0	coding only	34834024	74	197	2.124360e-06	5.655390e-06
TCGA-CM-4743-01A-01D-1719-10	1525	1485	40	1120	2.622951e-02	0	coding only	34834024	344	1045	9.875402e-06	2.999941e-05
TCGA-CM-4744-01A-01D-1408-10	201	198	3	149	1.492537e-02	0	coding only	34834024	46	136	1.320548e-06	3.904229e-06
TCGA-CM-4746-01A-01D-1408-10	854	833	21	619	2.459016e-02	0	coding only	34834024	201	586	5.770221e-06	1.682263e-05
TCGA-CM-4747-01A-01D-1408-10	121	120	1	83	8.264463e-03	0	coding only	34834024	32	79	9.186421e-07	2.267898e-06
TCGA-CM-4752-01A-01D-1408-10	405	402	3	285	7.407407e-03	0	coding only	34834024	113	270	3.243955e-06	7.751042e-06
TCGA-CM-5341-01A-01D-1408-10	176	171	5	126	2.840909e-02	0	coding only	34834024	44	118	1.263133e-06	3.387493e-06
TCGA-CM-5344-01A-21D-1719-10	332	326	6	235	1.807229e-02	0	coding only	34834024	85	221	2.440143e-06	6.344372e-06
TCGA-CM-5348-01A-21D-1719-10	494	491	3	347	6.072874e-03	0	coding only	34834024	134	322	3.846814e-06	9.243836e-06
TCGA-CM-5349-01A-21D-1719-10	454	450	4	315	8.810573e-03	0	coding only	34834024	129	297	3.703276e-06	8.526147e-06
TCGA-CM-5860-01A-01D-1650-10	392	389	3	280	7.653061e-03	0	coding only	34834024	106	270	3.043002e-06	7.751042e-06
TCGA-CM-5861-01A-01D-1650-10	1710	1673	37	1247	2.163743e-02	0	coding only	34834024	397	1171	1.139690e-05	3.361656e-05
TCGA-CM-5862-01A-01D-1650-10	276	270	6	189	2.173913e-02	0	coding only	34834024	80	182	2.296605e-06	5.224777e-06
TCGA-CM-5863-01A-21D-1835-10	107	106	1	72	9.345794e-03	0	coding only	34834024	32	70	9.186421e-07	2.009530e-06
TCGA-CM-5864-01A-01D-1650-10	383	379	4	274	1.044386e-02	0	coding only	34834024	99	257	2.842049e-06	7.377844e-06
TCGA-CM-5868-01A-01D-1650-10	342	337	5	232	1.461988e-02	0	coding only	34834024	102	220	2.928172e-06	6.315664e-06
TCGA-CM-6161-01A-11D-1650-10	322	316	6	225	1.863354e-02	0	coding only	34834024	86	217	2.468851e-06	6.229542e-06
TCGA-CM-6162-01A-11D-1650-10	1296	1271	25	919	1.929012e-02	0	coding only	34834024	330	846	9.473496e-06	2.428660e-05
TCGA-CM-6163-01A-11D-1650-10	233	228	5	166	2.145923e-02	0	coding only	34834024	58	159	1.665039e-06	4.564503e-06
TCGA-CM-6164-01A-11D-1650-10	247	241	6	171	2.429150e-02	0	coding only	34834024	64	165	1.837284e-06	4.736748e-06
TCGA-CM-6165-01A-11D-1650-10	183	182	1	130	5.464481e-03	0	coding only	34834024	50	125	1.435378e-06	3.588446e-06
TCGA-CM-6166-01A-11D-1650-10	195	193	2	147	1.025641e-02	0	coding only	34834024	41	143	1.177010e-06	4.105182e-06
TCGA-CM-6167-01A-11D-1650-10	190	186	4	131	2.105263e-02	0	coding only	34834024	54	120	1.550208e-06	3.444908e-06
TCGA-CM-6168-01A-11D-1650-10	371	369	2	273	5.390836e-03	0	coding only	34834024	91	254	2.612388e-06	7.291721e-06
TCGA-CM-6169-01A-11D-1650-10	239	234	5	175	2.092050e-02	0	coding only	34834024	58	162	1.665039e-06	4.650625e-06
TCGA-CM-6170-01A-11D-1650-10	216	207	9	144	4.166667e-02	1	exome+100bp flanks	34834024	58	139	1.665039e-06	3.990352e-06
TCGA-CM-6171-01A-11D-1650-10	1527	1495	32	1120	2.095612e-02	0	coding only	34834024	349	1044	1.001894e-05	2.997070e-05
TCGA-CM-6172-01A-11D-1650-10	260	258	2	169	7.692308e-03	0	coding only	34834024	86	161	2.468851e-06	4.621918e-06
TCGA-CM-6674-01A-11D-1835-10	1031	1011	20	756	1.939864e-02	0	coding only	34834024	237	705	6.803693e-06	2.023883e-05
TCGA-CM-6675-01A-11D-1835-10	162	159	3	120	1.851852e-02	0	coding only	34834024	38	114	1.090887e-06	3.272662e-06
TCGA-CM-6676-01A-11D-1835-10	234	232	2	166	8.547009e-03	0	coding only	34834024	65	158	1.865992e-06	4.535795e-06
TCGA-CM-6677-01A-11D-1835-10	215	213	2	160	9.302326e-03	0	coding only	34834024	53	150	1.521501e-06	4.306135e-06
TCGA-CM-6678-01A-11D-1835-10	253	247	6	170	2.371542e-02	0	coding only	34834024	71	162	2.038237e-06	4.650625e-06
TCGA-CM-6679-01A-11D-1835-10	113	111	2	77	1.769912e-02	0	coding only	34834024	32	74	9.186421e-07	2.124360e-06
TCGA-CM-6680-01A-11D-1835-10	206	204	2	137	9.708738e-03	0	coding only	34834024	64	130	1.837284e-06	3.731983e-06
TCGA-D5-5537-01A-21D-1924-10	178	176	2	123	1.123596e-02	0	coding only	34834024	50	113	1.435378e-06	3.243955e-06
TCGA-D5-5538-01A-01D-1650-10	300	293	7	213	2.333333e-02	0	coding only	34834024	77	205	2.210482e-06	5.885051e-06
TCGA-D5-5539-01A-01D-1650-10	330	327	3	226	9.090909e-03	0	coding only	34834024	97	211	2.784634e-06	6.057296e-06
TCGA-D5-5540-01A-01D-1650-10	282	274	8	190	2.836879e-02	0	coding only	34834024	81	182	2.325313e-06	5.224777e-06
TCGA-D5-5541-01A-01D-1650-10	220	218	2	146	9.090909e-03	0	coding only	34834024	68	140	1.952114e-06	4.019059e-06
TCGA-D5-6529-01A-11D-1771-10	244	238	6	160	2.459016e-02	0	coding only	34834024	76	152	2.181775e-06	4.363550e-06
TCGA-D5-6532-01A-11D-1719-10	381	378	3	260	7.874016e-03	0	coding only	34834024	111	245	3.186540e-06	7.033353e-06
TCGA-D5-6533-01A-11D-1719-10	474	470	4	344	8.438819e-03	0	coding only	34834024	121	327	3.473615e-06	9.387374e-06
TCGA-D5-6534-01A-21D-1924-10	204	199	5	149	2.450980e-02	0	coding only	34834024	50	141	1.435378e-06	4.047767e-06
TCGA-D5-6535-01A-11D-1719-10	448	443	5	327	1.116071e-02	0	coding only	34834024	114	310	3.272662e-06	8.899345e-06
TCGA-D5-6536-01A-11D-1719-10	436	433	3	318	6.880734e-03	0	coding only	34834024	106	307	3.043002e-06	8.813222e-06
TCGA-D5-6537-01A-11D-1719-10	336	334	2	258	5.952381e-03	0	coding only	34834024	73	242	2.095652e-06	6.947231e-06
TCGA-D5-6538-01A-11D-1719-10	308	303	5	216	1.623377e-02	0	coding only	34834024	84	210	2.411435e-06	6.028589e-06
TCGA-D5-6539-01A-11D-1719-10	333	331	2	239	6.006006e-03	0	coding only	34834024	87	233	2.497558e-06	6.688863e-06
TCGA-D5-6540-01A-11D-1719-10	1582	1548	34	1157	2.149178e-02	0	coding only	34834024	374	1078	1.073663e-05	3.094675e-05
TCGA-D5-6541-01A-11D-1719-10	310	306	4	233	1.290323e-02	0	coding only	34834024	70	222	2.009530e-06	6.373079e-06
TCGA-D5-6898-01A-11D-1924-10	133	132	1	94	7.518797e-03	0	coding only	34834024	34	91	9.760572e-07	2.612388e-06
TCGA-D5-6920-01A-11D-1924-10	160	156	4	110	2.500000e-02	0	coding only	34834024	42	105	1.205718e-06	3.014294e-06
TCGA-D5-6922-01A-11D-1924-10	208	205	3	143	1.442308e-02	0	coding only	34834024	55	137	1.578916e-06	3.932936e-06
TCGA-D5-6923-01A-11D-1924-10	334	326	8	215	2.395210e-02	0	coding only	34834024	103	202	2.956879e-06	5.798928e-06
TCGA-D5-6924-01A-11D-1924-10	228	226	2	163	8.771930e-03	0	coding only	34834024	62	147	1.779869e-06	4.220012e-06
TCGA-D5-6926-01A-11D-1924-10	146	142	4	101	2.739726e-02	0	coding only	34834024	40	91	1.148303e-06	2.612388e-06
TCGA-D5-6927-01A-21D-1924-10	796	774	22	593	2.763819e-02	0	coding only	34834024	168	553	4.822871e-06	1.587528e-05
TCGA-D5-6928-01A-11D-1924-10	1559	1522	37	1155	2.373316e-02	0	coding only	34834024	345	1076	9.904110e-06	3.088934e-05
TCGA-D5-6929-01A-31D-1924-10	255	249	6	186	2.352941e-02	0	coding only	34834024	57	179	1.636331e-06	5.138654e-06
TCGA-D5-6930-01A-11D-1924-10	1381	1363	18	1009	1.303403e-02	0	coding only	34834024	332	931	9.530912e-06	2.672674e-05
TCGA-D5-6931-01A-11D-1924-10	401	393	8	291	1.995012e-02	0	coding only	34834024	97	274	2.784634e-06	7.865873e-06
TCGA-D5-6932-01A-11D-1924-10	192	186	6	140	3.125000e-02	1	exome+100bp flanks	34834024	46	130	1.320548e-06	3.731983e-06
TCGA-D5-7000-01A-11D-1924-10	179	178	1	120	5.586592e-03	0	coding only	34834024	57	112	1.636331e-06	3.215247e-06
TCGA-DM-A0X9-01A-11D-A152-10	249	246	3	184	1.204819e-02	0	coding only	34834024	59	172	1.693746e-06	4.937701e-06
TCGA-DM-A0XD-01A-12D-A152-10	278	276	2	202	7.194245e-03	0	coding only	34834024	72	190	2.066945e-06	5.454437e-06
TCGA-DM-A0XF-01A-11D-A152-10	219	215	4	161	1.826484e-02	0	coding only	34834024	51	148	1.464086e-06	4.248720e-06
TCGA-DM-A1D0-01A-11D-A152-10	172	171	1	122	5.813953e-03	0	coding only	34834024	48	117	1.377963e-06	3.358785e-06
TCGA-DM-A1D4-01A-21D-A152-10	338	334	4	250	1.183432e-02	0	coding only	34834024	82	240	2.354020e-06	6.889816e-06
TCGA-DM-A1D6-01A-21D-A152-10	285	283	2	197	7.017544e-03	0	coding only	34834024	83	193	2.382728e-06	5.540560e-06
TCGA-DM-A1D7-01A-11D-A152-10	215	208	7	142	3.255814e-02	1	exome+100bp flanks	34834024	64	137	1.837284e-06	3.932936e-06
TCGA-DM-A1D8-01A-11D-A152-10	217	213	4	160	1.843318e-02	0	coding only	34834024	51	153	1.464086e-06	4.392257e-06
TCGA-DM-A1D9-01A-11D-A152-10	224	218	6	157	2.678571e-02	0	coding only	34834024	55	146	1.578916e-06	4.191304e-06
TCGA-DM-A1DA-01A-11D-A152-10	407	402	5	310	1.228501e-02	0	coding only	34834024	89	290	2.554973e-06	8.325194e-06
TCGA-DM-A1DB-01A-11D-A152-10	313	307	6	209	1.916933e-02	0	coding only	34834024	97	198	2.784634e-06	5.684098e-06
TCGA-DM-A1HA-01A-11D-A152-10	257	254	3	191	1.167315e-02	0	coding only	34834024	60	179	1.722454e-06	5.138654e-06
TCGA-DM-A1HB-01A-21D-A183-10	1476	1454	22	1090	1.490515e-02	0	coding only	34834024	346	1037	9.932817e-06	2.976974e-05
TCGA-DM-A282-01A-12D-A16V-10	174	172	2	117	1.149425e-02	0	coding only	34834024	53	111	1.521501e-06	3.186540e-06
TCGA-DM-A285-01A-11D-A16V-10	223	219	4	165	1.793722e-02	0	coding only	34834024	48	156	1.377963e-06	4.478380e-06
TCGA-DM-A28C-01A-11D-A16V-10	184	183	1	133	5.434783e-03	0	coding only	34834024	47	122	1.349256e-06	3.502323e-06
TCGA-DM-A28E-01A-11D-A16V-10	171	167	4	123	2.339181e-02	0	coding only	34834024	43	117	1.234425e-06	3.358785e-06
TCGA-DM-A28F-01A-11D-A16V-10	422	409	13	294	3.080569e-02	1	exome+100bp flanks	34834024	110	280	3.157832e-06	8.038118e-06
TCGA-DM-A28G-01A-11D-A16V-10	259	255	4	176	1.544402e-02	0	coding only	34834024	74	170	2.124360e-06	4.880286e-06
TCGA-DM-A28H-01A-11D-A16V-10	319	312	7	235	2.194357e-02	0	coding only	34834024	76	222	2.181775e-06	6.373079e-06
TCGA-DM-A28K-01A-21D-A16V-10	254	249	5	183	1.968504e-02	0	coding only	34834024	62	176	1.779869e-06	5.052531e-06
TCGA-F4-6459-01A-11D-1771-10	198	194	4	151	2.020202e-02	0	coding only	34834024	42	143	1.205718e-06	4.105182e-06
TCGA-F4-6460-01A-11D-1771-10	306	303	3	231	9.803922e-03	0	coding only	34834024	66	223	1.894699e-06	6.401787e-06
TCGA-F4-6569-01A-11D-1771-10	196	195	1	147	5.102041e-03	0	coding only	34834024	47	140	1.349256e-06	4.019059e-06
TCGA-F4-6570-01A-11D-1771-10	1773	1725	48	1332	2.707276e-02	0	coding only	34834024	364	1258	1.044955e-05	3.611412e-05
TCGA-F4-6703-01A-11D-1835-10	499	487	12	347	2.404810e-02	0	coding only	34834024	129	325	3.703276e-06	9.329959e-06
TCGA-F4-6704-01A-11D-1835-10	75	75	0	55	0	0	coding only	34834024	20	50	5.741513e-07	1.435378e-06
TCGA-F4-6805-01A-11D-1835-10	83	81	2	58	2.409639e-02	0	coding only	34834024	23	56	6.602740e-07	1.607624e-06
TCGA-F4-6806-01A-11D-1835-10	138	137	1	96	7.246377e-03	0	coding only	34834024	39	91	1.119595e-06	2.612388e-06
TCGA-F4-6807-01A-11D-1835-10	205	201	4	153	1.951220e-02	0	coding only	34834024	43	142	1.234425e-06	4.076474e-06
TCGA-F4-6808-01A-11D-1835-10	199	196	3	143	1.507538e-02	0	coding only	34834024	52	138	1.492793e-06	3.961644e-06
TCGA-F4-6809-01A-11D-1835-10	190	187	3	142	1.578947e-02	0	coding only	34834024	45	136	1.291840e-06	3.904229e-06
TCGA-F4-6854-01A-11D-1924-10	120	118	2	92	1.666667e-02	0	coding only	34834024	24	86	6.889816e-07	2.468851e-06
TCGA-F4-6855-01A-11D-1924-10	137	133	4	92	2.919708e-02	0	coding only	34834024	40	89	1.148303e-06	2.554973e-06
TCGA-F4-6856-01A-11D-1924-10	1171	1139	32	854	2.732707e-02	0	coding only	34834024	268	799	7.693627e-06	2.293734e-05
TCGA-G4-6293-01A-11D-1719-10	499	493	6	335	1.202405e-02	0	coding only	34834024	152	316	4.363550e-06	9.071590e-06
TCGA-G4-6299-01A-11D-1771-10	302	298	4	212	1.324503e-02	0	coding only	34834024	84	200	2.411435e-06	5.741513e-06
TCGA-G4-6303-01A-11D-1771-10	414	408	6	275	1.449275e-02	0	coding only	34834024	127	259	3.645861e-06	7.435259e-06
TCGA-G4-6304-01A-11D-1924-10	923	912	11	667	1.191766e-02	0	coding only	34834024	232	623	6.660155e-06	1.788481e-05
TCGA-G4-6306-01A-11D-1771-10	321	317	4	232	1.246106e-02	0	coding only	34834024	83	218	2.382728e-06	6.258249e-06
TCGA-G4-6307-01A-11D-1719-10	361	356	5	263	1.385042e-02	0	coding only	34834024	90	251	2.583681e-06	7.205599e-06
TCGA-G4-6309-01A-21D-1835-10	1017	998	19	753	1.868240e-02	0	coding only	34834024	228	704	6.545325e-06	2.021013e-05
TCGA-G4-6310-01A-11D-1719-10	319	317	2	206	6.269592e-03	0	coding only	34834024	103	192	2.956879e-06	5.511852e-06
TCGA-G4-6315-01A-11D-1719-10	390	385	5	278	1.282051e-02	0	coding only	34834024	103	264	2.956879e-06	7.578797e-06
TCGA-G4-6317-01A-11D-1719-10	294	289	5	215	1.700680e-02	0	coding only	34834024	69	202	1.980822e-06	5.798928e-06
TCGA-G4-6321-01A-11D-1719-10	319	314	5	226	1.567398e-02	0	coding only	34834024	83	217	2.382728e-06	6.229542e-06
TCGA-G4-6323-01A-11D-1719-10	274	270	4	187	1.459854e-02	0	coding only	34834024	78	183	2.239190e-06	5.253484e-06
TCGA-G4-6586-01A-11D-1771-10	1511	1482	29	1127	1.919259e-02	0	coding only	34834024	329	1060	9.444789e-06	3.043002e-05
TCGA-G4-6588-01A-11D-1771-10	2594	2537	57	1905	2.197379e-02	0	coding only	34834024	596	1788	1.710971e-05	5.132913e-05
TCGA-G4-6625-01A-21D-1771-10	237	235	2	169	8.438819e-03	0	coding only	34834024	65	157	1.865992e-06	4.507088e-06
TCGA-G4-6626-01A-11D-1771-10	452	449	3	307	6.637168e-03	0	coding only	34834024	133	296	3.818106e-06	8.497439e-06
TCGA-G4-6628-01A-11D-1835-10	2126	2082	44	1556	2.069614e-02	0	coding only	34834024	501	1459	1.438249e-05	4.188434e-05