Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	6 (12%)	42	0.19664	1	0.66617	1	0.23295	1	0.27628	1	1	1	0.63781	1	0.41257	1	0.31262	1	1	1	0.84198	1
2p gain	6 (12%)	42	0.66904	1	0.66617	1	1	1	0.82565	1	1	1	NA	NA	1	1	0.60466	1	1	1	0.22035	1
2q gain	6 (12%)	42	0.66904	1	0.66617	1	1	1	0.82506	1	1	1	NA	NA	1	1	0.60664	1	1	1	0.21993	1
3p gain	10 (21%)	38	0.036327	0.768	0.28647	1	1	1	0.24861	1	1	1	0.6767	1	0.63256	1	0.40394	1	0.7075	1	0.34824	1
3q gain	13 (27%)	35	0.018751	0.691	0.19302	1	0.44826	1	0.03692	0.768	1	1	0.51644	1	0.76497	1	0.56533	1	1	1	0.24821	1
5p gain	7 (15%)	41	0.68742	1	1	1	0.63899	1	0.68383	1	1	1	NA	NA	0.34091	1	0.64097	1	0.3558	1	0.11888	1
5q gain	6 (12%)	42	1	1	1	1	0.63899	1	0.68634	1	0.46429	1	NA	NA	0.6604	1	0.79704	1	0.61348	1	0.53401	1
6p gain	6 (12%)	42	0.19664	1	1	1	0.34567	1	0.82561	1	1	1	1	1	1	1	0.86209	1	0.644	1	0.88301	1
6q gain	4 (8%)	44	0.01992	0.691	0.60851	1	1	1	0.76937	1	1	1	NA	NA	0.71031	1	1	1	0.084408	1	0.87397	1
7p gain	15 (31%)	33	1.0388e-05	0.0027	0.53433	1	0.69916	1	0.76324	1	1	1	0.45629	1	0.92422	1	0.88724	1	1	1	0.12471	1
7q gain	13 (27%)	35	7.7147e-06	0.0027	1	1	1	1	1	1	0.67029	1	0.12164	1	0.66125	1	0.98797	1	1	1	0.38161	1
8p gain	7 (15%)	41	0.68742	1	0.4158	1	1	1	1	1	0.20635	1	NA	NA	0.10193	1	0.0054799	0.57	0.42751	1	0.25796	1
8q gain	8 (17%)	40	0.45109	1	0.24482	1	0.63899	1	0.82656	1	0.20635	1	NA	NA	0.1473	1	0.02773	0.768	0.42751	1	0.25799	1
9p gain	7 (15%)	41	0.68742	1	1	1	1	1	0.4384	1	1	1	NA	NA	0.77462	1	0.64002	1	1	1	0.46547	1
9q gain	7 (15%)	41	0.68742	1	1	1	1	1	0.43846	1	1	1	NA	NA	0.48471	1	0.2932	1	1	1	0.26669	1
10p gain	4 (8%)	44	0.01992	0.691	1	1	1	1	NA	NA	1	1	NA	NA	1	1	1	1	0.58127	1	0.64001	1
10q gain	4 (8%)	44	0.2864	1	0.60851	1	1	1	0.76845	1	0.46429	1	NA	NA	0.42518	1	0.77715	1	0.084408	1	0.26037	1
11p gain	9 (19%)	39	0.45109	1	0.4614	1	1	1	0.37936	1	0.6	1	0.145	1	0.7198	1	0.16254	1	0.43296	1	0.22753	1
11q gain	13 (27%)	35	0.09594	1	0.19302	1	0.66478	1	0.35733	1	0.68599	1	0.086059	1	0.44797	1	0.072879	1	0.46818	1	0.40052	1
12p gain	7 (15%)	41	1	1	0.4158	1	1	1	0.29969	1	0.58333	1	0.10988	1	0.81487	1	0.27275	1	0.38421	1	0.86284	1
12q gain	9 (19%)	39	1	1	0.13653	1	0.67409	1	0.47475	1	1	1	0.14758	1	0.6462	1	0.13647	1	0.43296	1	0.49115	1
13q gain	5 (10%)	43	1	1	1	1	1	1	1	1	0.20635	1	NA	NA	0.13453	1	0.65981	1	0.034629	0.768	0.83784	1
16p gain	7 (15%)	41	0.011371	0.691	0.4158	1	1	1	1	1	0.6	1	0.21033	1	0.32599	1	0.02819	0.768	0.38421	1	0.51221	1
16q gain	7 (15%)	41	0.096687	1	0.097147	1	1	1	1	1	0.6	1	1	1	0.32708	1	0.01385	0.691	0.38421	1	0.70628	1
17q gain	3 (6%)	45	0.554	1	0.23404	1	1	1	0.76951	1	0.46429	1	NA	NA	0.60847	1	0.0358	0.768	0.58127	1	0.49611	1
18p gain	13 (27%)	35	0.09594	1	1	1	0.13358	1	0.77877	1	1	1	0.67701	1	0.36413	1	0.12202	1	0.50379	1	0.52354	1
18q gain	14 (29%)	34	0.049144	0.913	1	1	0.069633	1	0.68711	1	0.65459	1	1	1	0.45241	1	0.11561	1	0.32267	1	0.40426	1
19p gain	3 (6%)	45	0.554	1	1	1	1	1	NA	NA	0.46429	1	NA	NA	0.68709	1	0.68897	1	0.45238	1	NA	NA
19q gain	3 (6%)	45	0.554	1	1	1	1	1	NA	NA	0.46429	1	NA	NA	0.68809	1	0.69055	1	0.45238	1	NA	NA
20p gain	5 (10%)	43	0.37155	1	0.34752	1	0.6074	1	0.15414	1	1	1	NA	NA	0.28899	1	0.37734	1	1	1	0.70017	1
20q gain	4 (8%)	44	1	1	0.60851	1	1	1	0.11734	1	0.46429	1	NA	NA	0.65641	1	0.81819	1	0.58127	1	0.30482	1
21q gain	10 (21%)	38	1	1	1	1	0.66478	1	0.03464	0.768	1	1	0.42226	1	0.02858	0.768	0.18518	1	0.25849	1	0.37364	1
xp gain	6 (12%)	42	0.02969	0.768	0.66617	1	1	1	0.81592	1	0.48413	1	NA	NA	0.52121	1	0.1796	1	0.15802	1	0.01345	0.691
xq gain	6 (12%)	42	0.19664	1	0.66617	1	1	1	0.81532	1	1	1	0.38528	1	0.78421	1	0.064439	1	0.38421	1	0.11168	1
1p loss	3 (6%)	45	0.554	1	1	1	0.57936	1	0.57285	1	1	1	1	1	1	1	0.84923	1	1	1	NA	NA
3p loss	5 (10%)	43	1	1	1	1	0.57936	1	1	1	1	1	NA	NA	0.85548	1	0.95914	1	1	1	0.66454	1
3q loss	4 (8%)	44	1	1	1	1	1	1	NA	NA	1	1	NA	NA	1	1	1	1	0.58127	1	0.52664	1
4p loss	3 (6%)	45	0.554	1	1	1	0.19886	1	NA	NA	0.46429	1	NA	NA	0.15142	1	0.68893	1	1	1	NA	NA
4q loss	4 (8%)	44	0.2864	1	0.60851	1	0.57936	1	0.57073	1	1	1	NA	NA	0.46641	1	0.23534	1	0.61348	1	0.8761	1
6q loss	7 (15%)	41	1	1	0.4158	1	1	1	1	1	1	1	0.38665	1	0.70644	1	0.72576	1	0.075398	1	0.51593	1
8p loss	8 (17%)	40	0.044639	0.86	1	1	0.0045189	0.57	0.04452	0.86	0.31111	1	0.35675	1	0.19951	1	0.02542	0.768	1	1	0.93419	1
8q loss	4 (8%)	44	0.2864	1	1	1	0.083394	1	0.076709	1	1	1	NA	NA	0.65352	1	0.15755	1	1	1	NA	NA
13q loss	3 (6%)	45	0.554	1	1	1	0.45455	1	NA	NA	1	1	NA	NA	1	1	0.85094	1	1	1	NA	NA
15q loss	7 (15%)	41	0.011371	0.691	0.4158	1	0.57936	1	0.57027	1	0.63889	1	0.45163	1	0.12654	1	0.36923	1	0.19727	1	0.74636	1
16q loss	4 (8%)	44	0.01992	0.691	1	1	0.57936	1	0.57164	1	1	1	0.63894	1	0.096229	1	0.12569	1	0.23868	1	0.66227	1
17p loss	9 (19%)	39	0.019532	0.691	1	1	0.63899	1	1	1	1	1	0.76007	1	0.88666	1	0.50312	1	0.38421	1	0.26822	1
17q loss	4 (8%)	44	0.2864	1	0.60851	1	0.19886	1	NA	NA	1	1	NA	NA	0.71026	1	0.4924	1	0.084408	1	0.46412	1
18p loss	5 (10%)	43	0.37155	1	0.34752	1	0.23295	1	0.27485	1	0.48413	1	NA	NA	0.55548	1	0.25204	1	0.15802	1	0.21865	1
18q loss	4 (8%)	44	0.2864	1	0.60851	1	1	1	NA	NA	1	1	NA	NA	0.65601	1	1	1	0.58127	1	0.52426	1
22q loss	3 (6%)	45	0.056025	1	1	1	1	1	0.76939	1	1	1	NA	NA	1	1	0.4363	1	1	1	NA	NA
xp loss	5 (10%)	43	0.37155	1	0.34752	1	0.57936	1	0.56928	1	0.58333	1	0.56127	1	0.33366	1	0.01355	0.691	0.3558	1	0.28097	1
xq loss	4 (8%)	44	0.2864	1	0.10922	1	0.57936	1	0.56999	1	0.58333	1	0.56085	1	0.14301	1	0.00215	0.373	0.61348	1	0.32327	1