Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q24.2	16 (33%)	32	0.0052411	0.297	1	1	0.69675	1	0.50716	1	0.40966	1	0.22612	0.929	0.77463	1	0.45868	1	1	1	1	1
amp_2p16.1	16 (33%)	32	0.12369	0.728	0.00050861	0.0678	0.26593	0.97	0.27205	0.97	0.68599	1	0.74958	1	0.058109	0.581	0.01203	0.37	0.33488	0.977	0.47096	1
amp_3q27.3	14 (29%)	34	0.0079998	0.297	0.34116	0.977	1	1	0.25163	0.959	0.39553	1	0.71755	1	0.71207	1	0.29224	0.977	0.51593	1	0.37317	0.982
amp_3q29	15 (31%)	33	0.0032397	0.216	0.21238	0.919	0.69675	1	0.10859	0.727	0.65459	1	1	1	0.88157	1	0.29611	0.977	1	1	0.20464	0.919
amp_5p13.1	8 (17%)	40	1	1	0.70078	1	1	1	1	1	1	1	NA	NA	0.45221	1	0.58699	1	0.67286	1	0.18678	0.896
amp_7p22.3	16 (33%)	32	7.6208e-05	0.0152	0.35872	0.982	0.69916	1	0.76208	1	1	1	0.65426	1	0.92577	1	0.88559	1	1	1	0.12272	0.728
amp_7q21.3	15 (31%)	33	1.0388e-05	0.00416	1	1	1	1	1	1	0.67029	1	0.12135	0.728	0.51381	1	0.88804	1	0.74221	1	0.44446	1
amp_8q24.23	14 (29%)	34	1	1	0.75164	1	0.44826	1	0.78281	1	0.63889	1	0.67852	1	0.49089	1	0.19706	0.904	0.72578	1	0.34435	0.977
amp_12q21.1	14 (29%)	34	0.51711	1	0.024301	0.471	1	1	0.71677	1	1	1	0.1228	0.728	0.68224	1	0.072649	0.618	0.32267	0.977	0.72634	1
amp_16p12.2	10 (21%)	38	0.0081776	0.297	0.072265	0.618	1	1	0.86109	1	0.17271	0.867	0.34313	0.977	0.068519	0.618	0.04858	0.549	1	1	0.61425	1
amp_18q21.2	16 (33%)	32	0.030584	0.471	0.76011	1	0.26593	0.97	0.71886	1	0.65459	1	1	1	0.2164	0.919	0.02875	0.471	0.33488	0.977	0.11335	0.727
amp_19q13.43	10 (21%)	38	1	1	0.28647	0.977	1	1	1	1	0.58333	1	1	1	0.26688	0.97	0.27819	0.976	0.70921	1	0.055109	0.575
amp_xq27.3	7 (15%)	41	0.096687	0.694	0.097147	0.694	0.66478	1	0.44168	1	0.65459	1	0.70417	1	0.32872	0.977	0.080499	0.644	0.68195	1	0.3298	0.977
del_1p36.32	11 (23%)	37	0.015536	0.414	1	1	0.67409	1	0.54737	1	1	1	0.51539	1	0.55098	1	0.70313	1	1	1	0.43574	1
del_1p13.1	12 (25%)	36	0.50071	1	0.73997	1	0.67409	1	0.34531	0.977	0.67029	1	0.27396	0.97	0.56034	1	0.76532	1	1	1	0.57495	1
del_1q43	10 (21%)	38	0.036327	0.519	0.72379	1	0.10149	0.712	0.04684	0.549	1	1	1	1	0.71411	1	0.84164	1	1	1	0.6112	1
del_2q23.1	8 (17%)	40	0.23582	0.929	1	1	0.15228	0.817	0.13308	0.76	1	1	0.51627	1	0.77875	1	0.52406	1	0.67286	1	0.61895	1
del_3p21.31	8 (17%)	40	0.45109	1	0.70078	1	1	1	0.70919	1	0.48413	1	NA	NA	0.23686	0.929	0.77653	1	0.21423	0.919	0.44306	1
del_4q35.1	10 (21%)	38	0.48728	1	0.72379	1	0.67409	1	0.34913	0.977	0.63889	1	0.54478	1	0.34632	0.977	0.15324	0.817	0.14944	0.817	0.3704	0.982
del_5q33.3	4 (8%)	44	0.2864	0.977	0.60851	1	0.48864	1	NA	NA	1	1	0.03409	0.505	0.25682	0.963	0.0077799	0.297	0.31286	0.977	0.74329	1
del_6p21.32	6 (12%)	42	1	1	1	1	0.30828	0.977	0.21894	0.919	0.58333	1	0.76046	1	0.69758	1	0.52347	1	0.644	1	0.32893	0.977
del_6q14.1	17 (35%)	31	0.22054	0.919	0.54687	1	0.4688	1	0.51868	1	0.43478	1	0.32607	0.977	0.19452	0.904	0.17584	0.868	0.0032121	0.216	0.11944	0.728
del_6q22.32	16 (33%)	32	0.75898	1	0.030477	0.471	0.72202	1	0.88919	1	0.39553	1	0.38815	1	0.37231	0.982	0.36946	0.982	0.049374	0.549	0.10986	0.727
del_6q23.3	16 (33%)	32	1	1	0.030477	0.471	0.069633	0.618	0.076749	0.64	0.083575	0.655	0.02206	0.471	0.17343	0.867	0.16727	0.859	0.023061	0.471	0.25772	0.963
del_7q33	5 (10%)	43	0.37155	0.982	1	1	1	1	NA	NA	0.46429	1	NA	NA	0.43224	1	0.17928	0.875	0.644	1	0.34663	0.977
del_8p23.2	12 (25%)	36	0.0061605	0.297	0.73997	1	0.23948	0.93	0.50823	1	0.31111	0.977	0.35806	0.982	0.59909	1	0.080079	0.644	0.7075	1	0.92605	1
del_8q12.1	9 (19%)	39	0.12727	0.738	0.4614	1	0.070084	0.618	0.04204	0.549	0.31111	0.977	0.35632	0.982	0.50006	1	0.40841	1	1	1	0.57808	1
del_9p21.3	17 (35%)	31	0.22054	0.919	0.014547	0.414	1	1	0.71162	1	0.11449	0.727	0.32618	0.977	0.0091799	0.306	0.02834	0.471	0.054685	0.575	0.10942	0.727
del_10q23.31	8 (17%)	40	0.23582	0.929	1	1	1	1	0.76902	1	0.63889	1	0.03955	0.546	0.061009	0.595	0.67784	1	0.42751	1	0.0242	0.471
del_12p13.2	8 (17%)	40	0.044639	0.549	0.70078	1	1	1	0.81438	1	1	1	1	1	0.66043	1	0.95519	1	1	1	0.84371	1
del_13q14.2	7 (15%)	41	0.096687	0.694	0.4158	1	1	1	0.27384	0.97	1	1	0.76189	1	0.1882	0.896	0.25129	0.959	1	1	0.65291	1
del_15q21.1	13 (27%)	35	0.74131	1	0.51708	1	0.41336	1	0.73344	1	1	1	0.65731	1	0.48884	1	0.66469	1	0.72578	1	0.3299	0.977
del_16p13.13	6 (12%)	42	0.19664	0.904	0.66617	1	0.66478	1	0.15047	0.817	0.31111	0.977	0.80849	1	0.32469	0.977	0.02906	0.471	0.61348	1	0.62851	1
del_16q23.1	5 (10%)	43	0.072436	0.618	1	1	0.30828	0.977	0.36541	0.982	0.63889	1	0.44874	1	0.090329	0.694	0.16554	0.859	0.11374	0.727	0.75925	1
del_17p13.1	13 (27%)	35	0.0022681	0.216	0.51708	1	0.69675	1	0.88525	1	1	1	1	1	0.64666	1	0.50936	1	1	1	0.61039	1
del_17q24.1	8 (17%)	40	0.23582	0.929	0.047924	0.549	0.34567	0.977	0.16746	0.859	1	1	0.04343	0.549	0.63827	1	0.02993	0.471	0.21423	0.919	0.14877	0.817
del_19p13.2	4 (8%)	44	1	1	1	1	1	1	NA	NA	0.48413	1	NA	NA	1	1	0.42996	1	1	1	0.66349	1
del_19q13.2	5 (10%)	43	1	1	0.34752	0.977	0.48864	1	NA	NA	0.48413	1	NA	NA	1	1	0.6607	1	0.58127	1	0.7251	1
del_22q13.31	7 (15%)	41	0.096687	0.694	1	1	1	1	0.83814	1	1	1	1	1	0.94882	1	0.90604	1	1	1	0.61841	1
del_xq28	3 (6%)	45	0.056025	0.575	0.23404	0.929	0.19886	0.904	NA	NA	0.46429	1	NA	NA	0.47724	1	0.44063	1	1	1	NA	NA